5 results on '"Abderemane-Ali F"'
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2. Structure of the human K 2P 13.1(THIK-1) channel reveals a novel hydrophilic pore restriction and lipid cofactor site.
- Author
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Roy-Chowdhury S, Jang S, Abderemane-Ali F, Naughton F, Grabe M, and Minor DL Jr
- Abstract
The halothane-inhibited K
2P leak potassium channel K2P 13.1 (THIK-1)1-3 is found in diverse cells1,4 including neurons1,5 and microglia6-8 where it affects surveillance6, synaptic pruning7, phagocytosis7, and inflammasome-mediated interleukin-1β release6,8,9 . As with many K2P s1,5,10-14 and other voltage-gated ion channel (VGIC) superfamily members3,15,16 , polyunsaturated fatty acid (PUFA) lipids modulate K2P 13.1 (THIK-1)1,5,14,17 via a poorly understood mechanism. Here, we present cryo-electronmicroscopy (cryo-EM) structures of human K2P 13.1 (THIK-1) and mutants in lipid nanodiscs and detergent. These reveal that, unlike other K2P s13,18-24 , K2P 13.1 (THIK-1) has a two-chamber aqueous inner cavity obstructed by a M4 transmembrane helix tyrosine (Tyr273, the flow restrictor). This hydrophilic barrier can be opened by an activatory mutation, S136P25 , at natural break in the M2 transmembrane helix and by intrinsic channel dynamics. The structures also reveal a buried lipid in the P1/M4 intersubunit interface at a location, the PUFA site, that coincides with the TREK subfamily K2P modulator pocket for small molecule agonists18,26,27 . This overlap, together with the effects of mutation on K2P 13.1 (THIK-1) PUFA responses, indicates that the PUFA site lipids are K2P 13.1 (THIK-1) cofactors. Comparison with the PUFA-responsive VGIC Kv7.1 (KCNQ1)28-31 reveals a shared role for the equivalent pore domain intersubunit interface in lipid modulation, providing a framework for dissecting the effects of PUFAs on the VGIC superfamily. Our findings reveal the unique architecture underlying K2P 13.1 (THIK-1) function, highlight the importance of the P1/M4 interface in control of K2P s by both natural and synthetic agents, and should aid development of THIK subfamily modulators for diseases such as neuroinflammation6,32 and autism6 ., Competing Interests: Competing interests The authors declare no competing interests.- Published
- 2024
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3. EMC chaperone-Ca V structure reveals an ion channel assembly intermediate.
- Author
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Chen Z, Mondal A, Abderemane-Ali F, Jang S, Niranjan S, Montaño JL, Zaro BW, and Minor DL Jr
- Subjects
- Humans, Binding Sites, Brain, Cryoelectron Microscopy, Gabapentin pharmacology, Myocardium chemistry, Calcium Channels, L-Type chemistry, Calcium Channels, L-Type metabolism, Calcium Channels, L-Type ultrastructure, Endoplasmic Reticulum chemistry, Endoplasmic Reticulum metabolism, Endoplasmic Reticulum ultrastructure, Membrane Proteins chemistry, Membrane Proteins metabolism, Membrane Proteins ultrastructure
- Abstract
Voltage-gated ion channels (VGICs) comprise multiple structural units, the assembly of which is required for function
1,2 . Structural understanding of how VGIC subunits assemble and whether chaperone proteins are required is lacking. High-voltage-activated calcium channels (CaV s)3,4 are paradigmatic multisubunit VGICs whose function and trafficking are powerfully shaped by interactions between pore-forming CaV 1 or CaV 2 CaV α1 (ref.3 ), and the auxiliary CaV β5 and CaV α2 δ subunits6,7 . Here we present cryo-electron microscopy structures of human brain and cardiac CaV 1.2 bound with CaV β3 to a chaperone-the endoplasmic reticulum membrane protein complex (EMC)8,9 -and of the assembled CaV 1.2-CaV β3 -CaV α2 δ-1 channel. These structures provide a view of an EMC-client complex and define EMC sites-the transmembrane (TM) and cytoplasmic (Cyto) docks; interaction between these sites and the client channel causes partial extraction of a pore subunit and splays open the CaV α2 δ-interaction site. The structures identify the CaV α2 δ-binding site for gabapentinoid anti-pain and anti-anxiety drugs6 , show that EMC and CaV α2 δ interactions with the channel are mutually exclusive, and indicate that EMC-to-CaV α2 δ hand-off involves a divalent ion-dependent step and CaV 1.2 element ordering. Disruption of the EMC-CaV complex compromises CaV function, suggesting that the EMC functions as a channel holdase that facilitates channel assembly. Together, the structures reveal a CaV assembly intermediate and EMC client-binding sites that could have wide-ranging implications for the biogenesis of VGICs and other membrane proteins., (© 2023. The Author(s), under exclusive licence to Springer Nature Limited.)- Published
- 2023
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4. Definition of a saxitoxin (STX) binding code enables discovery and characterization of the anuran saxiphilin family.
- Author
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Chen Z, Zakrzewska S, Hajare HS, Alvarez-Buylla A, Abderemane-Ali F, Bogan M, Ramirez D, O'Connell LA, Du Bois J, and Minor DL Jr
- Subjects
- Animals, Ligands, Guanidine, Carrier Proteins metabolism, Rana catesbeiana, Saxitoxin genetics, Neurotoxins
- Abstract
American bullfrog ( Rana castesbeiana ) saxiphilin ( Rc Sxph) is a high-affinity "toxin sponge" protein thought to prevent intoxication by saxitoxin (STX), a lethal bis-guanidinium neurotoxin that causes paralytic shellfish poisoning (PSP) by blocking voltage-gated sodium channels (Na
V s). How specific Rc Sxph interactions contribute to STX binding has not been defined and whether other organisms have similar proteins is unclear. Here, we use mutagenesis, ligand binding, and structural studies to define the energetic basis of Sxph:STX recognition. The resultant STX "recognition code" enabled engineering of Rc Sxph to improve its ability to rescue NaV s from STX and facilitated discovery of 10 new frog and toad Sxphs. Definition of the STX binding code and Sxph family expansion among diverse anurans separated by ∼140 My of evolution provides a molecular basis for understanding the roles of toxin sponge proteins in toxin resistance and for developing novel proteins to sense or neutralize STX and related PSP toxins.- Published
- 2022
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5. Differential effects of modified batrachotoxins on voltage-gated sodium channel fast and slow inactivation.
- Author
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MacKenzie TMG, Abderemane-Ali F, Garrison CE, Minor DL Jr, and Bois JD
- Subjects
- Esters, Sodium metabolism, Batrachotoxins pharmacology, Voltage-Gated Sodium Channels
- Abstract
Voltage-gated sodium channels (Na
V s) are targets for a number of acute poisons. Many of these agents act as allosteric modulators of channel activity and serve as powerful chemical tools for understanding channel function. Herein, we detail studies with batrachotoxin (BTX), a potent steroidal amine, and three ester derivatives prepared through de novo synthesis against recombinant NaV subtypes (rNaV 1.4 and hNaV 1.5). Two of these compounds, BTX-B and BTX-c Hx, are functionally equivalent to BTX, hyperpolarizing channel activation and blocking both fast and slow inactivation. BTX-yne-a C20-n-heptynoate ester-is a conspicuous outlier, eliminating fast but not slow inactivation. This property differentiates BTX-yne among other NaV modulators as a unique reagent that separates inactivation processes. These findings are supported by functional studies with bacterial NaV s (BacNaV s) that lack a fast inactivation gate. The availability of BTX-yne should advance future efforts aimed at understanding NaV gating mechanisms and designing allosteric regulators of NaV activity., Competing Interests: Declaration of interests J.D. is a cofounder, executive board member, and holds equity shares in SiteOne Therapeutics, Inc., a start-up company interested in developing subtype-selective modulators of Na(V)., (Copyright © 2021 Elsevier Ltd. All rights reserved.)- Published
- 2022
- Full Text
- View/download PDF
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