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The Sansha Yongle Blue Hole (SYBH) is the deepest (301.19 m) blue hole known in the world and is a water-filled karst opening in the intertidal reef flats of the eastern Yongle Atoll, Xisha Islands, South China Sea. It is differentiated from the surrounding environment by its deep blue colour as observed when viewed from above. The SYBH exhibits extremely rare karst networks and speleothems and differs from the blue holes of the Bahamas and Bermuda, indicating a different development process. Here, we present the morphology and U Th ages of the SYBH, which document the evolution of the coastal cave over time. Morphology and lithostratigraphy indicate that the hole resulted from dissolution via ascending acidic water/gas followed by subsequent collapse. The adjacent volcanoes surrounding the eastern Yongle Atoll are the most likely source of these ascending fluids. U Th ages of the cemented carbonate sand underlying the entrance constrain an upper limit of the opening time of the SYBH to be up to 111.7 ± 9.5 kyr BP. Deeply submerged speleothems at −116 m determine the lower collapse time of the SYBH to be 29.16 ± 0.17 kyr BP. The SYBH probably formed due to the upward release of volcanogenic acid water/gas through low-lying unconsolidated carbonate sediments, followed by buoyant collapses due to a 40-m fall in the sea level during 31–29 kyr BP. As the sea level rose to −15 m in the early Holocene, corals grew in the cave opening since 8.58 kyr BP and surrounded the entrance for the SYBH. • SYBH may be dissolved by volcanic related ascending acidified gases or waters. • SYBH could collapse at about 29 kyr BP due to a rapid sea-level fall. • Optical U Th dating suggests Pleistocene eolianites in the Xisha Islands deposited during MIS 5. [ABSTRACT FROM AUTHOR]