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Aim: Andean montane forests are biodiversity hotspots and large carbon stores and they provide numerous ecosystem services. Following land abandonment after centuries of forest clearing for agriculture in the Andes, there is an opportunity for forest recovery. Field‐based studies show that forests do not always recover. However, large‐scale and long‐term knowledge of recovery dynamics of Andean forests remains scarce. This paper analyses tropical montane forest recovery trajectories over a 15‐year time frame at the landscape and tropical Andean scale to inform restoration planning. Methods: We first detect "potential recovery" as areas that have experienced a forest transition between 2000 and 2005. Then, we use Landsat time series analysis of the normalized difference water index (NDWI) to classify four "realized recovery" trajectories ("ongoing", "arrested", "disrupted" and "no recovery") based on a sequential pattern of 5‐yearly Z‐score anomalies for 2005–2020. We compare these results against an analysis of change in tree cover to validate against other datasets. Results: Across the tropical Andes, we detected a potential recovery area of 274 km2 over the period. Despite increases in tree cover, most areas of the Andes remained in early successional states (10–25% tree cover), and NDWI levelled out after 5–10 years. Of all potential forest recovery areas, 22% showed "ongoing recovery", 61% showed either "disrupted" or "arrested recovery", and 17% showed "no recovery". Our method captured forest recovery dynamics in a Peruvian arrested succession context and in landscape‐scale tree‐planting efforts in Ecuador. Main conclusions: Forest recovery across the Andes is mostly disrupted, arrested or unsuccessful, with consequences for biodiversity recovery and provision of ecosystem services. Low‐recovery areas identified in this study might be good candidates for active restoration interventions in this UN Decade on Restoration. Future studies could determine restoration strategies and priorities and suggest management strategies at a local planning scale across key regions in the biodiversity hotspot. [ABSTRACT FROM AUTHOR]

Plot-based monitoring has yielded much information on the taxonomic diversity and carbon (C) storage in tropical lowland forests of the Amazon basin. This has resulted in an improved understanding of the relationship between lowland forest biomass dynamics and global change drivers, such as climate change and atmospheric CO2 concentration. Much less attention has been paid to the mountain ecosystems of South America that comprise montane forests and alpine vegetation (páramo, puna, high Andean grasslands, wetlands, and alpine heath). This vegetation complex provides a variety of ecosystem services and forms a natural laboratory along various physiographic, geological and evolutionary history/biogeography, and land use history gradients. Here, we review existing empirical understanding and model-based approaches to quantify the contribution of mountain ecosystems to ecosystem service provision in the rapidly changing socioecological setting of the South American mountains. The objective of this paper is to outline a broad road map for the implementation of mountain vegetation into dynamic global vegetation models (DGVM) for use in Earth System Models (ESM), based on our current understanding of their structure and function and of their responsiveness to global change drivers. We also identify treeline processes, critical in mountain ecosystems, as key missing elements in DGVMs/ESMs, and thus explore in addition a treeline model. Stocktaking of the availability of empirical data was undertaken from eight research sites along the Andes and in south-eastern Brazil. Out of eight sites, two (one each in Venezuela and Brazil) had some climate, ecological and ecophysiological data potentially suitable to parametrise a DGVM. Tree biomass data were available for six sites. A preliminary assessment of the Joint UK Land Environment Simulator (JULES) DGVM was made to identify gaps in available data and their impacts on model parametrisation and calibration. Additionally, the potential climate-determined elevation of the treeline was modelled to check the DGVM for its ability to identify the transition between the montane forest and alpine vegetation. Outcomes of the evaluation of the JULES land surface model identified the following key processes in montane forests: temperature-related decrease in net primary production, respiration, and allocation to above-ground biomass and increase in soil C stocks with elevation. There was a variable agreement between simulated biomass and those derived from field measurements via allometric equations. We identified major gaps between data availability and the needs for process-based modelling of South American mountain vegetation and its dynamics in DGVMs. To bridge this gap, we propose a transdisciplinary network, composed of members of the theoretical/modelling and empirical scientific communities, to study the natural dynamics of mountain ecosystems and their responses to global change drivers locally, regionally and at the continental scale, within a social-ecological system framework. The work presented here forms the basis for the design of data collection from field measurements and instrumental monitoring stations to parametrise and verify DGVMs. The network is designed to collaborate with and complement existing long-term research initiatives in the region and will adopt existing standard field protocols. Complementary protocols will ensure compatibility between field data collection and data needed for process-based and empirical models. [ABSTRACT FROM AUTHOR]

During the last deglaciation, atmospheric CO2 increased by about 75 ppm. The deep ocean is likely the dominant source of this atmospheric CO2 rise in the atmospheric pool; however, a consensus accounting for the entire 75 ppm remains elusive. Since the deep ocean cannot account for the entire 75 ppm, the terrestrial environment likely makes up the remainder. This paper provides a mechanism for an unaccounted-for portion of the source of this terrestrial carbon, that being soil organic carbon (SOC) from the tropical montane Andes, and with that, minimum constraints on the contribution of SOC to the total rise in atmospheric CO2 during the last deglaciation. Using numerical climate modeling input into an empirical model derived from tropical montane forests of the Andes Mountains in South America, this study finds that during the last deglaciation, the organic layer thickness was thinning from the Last Glacial Maximum (LGM) to the present (pre-industrial) in the tropical montane Andes. This overall warming and organic layer thickness thinning may have led to a loss of available carbon storage space, causing a leak of CO2 into the atmosphere over this time scale. This study finds an estimate for the contribution of global atmospheric CO2 from SOC in tropical montane Andean soils is likely at least ∼1.4 ppm CO2 since the LGM. [ABSTRACT FROM AUTHOR]

The Andean cloud forests of Ecuador are home to several endemic mammals. Members of the Thomasomyini rodents are well represented in the Andes, with Thomasomys being the largest genus (47 species) of the subfamily Sigmodontinae. Within this tribe, however, there are genera that have escaped a taxonomic revision, and Chilomys Thomas, 1897, constitutes a paradigmatic example of these “forgotten” Andean cricetids. Described more than a century ago, current knowledge of this externally unmistakable montane rodent is very limited, and doubts persist as to whether or not it is monotypic. After several years of field efforts in Ecuador, a considerable quantity of specimens of Chilomys were collected from various localities representing both Andean chains. Based on an extensive genetic survey of the obtained material, we can demonstrate that what is currently treated as C. instans in Ecuador is a complex comprising at least five new species which are described in this paper. In addition, based on these noteworthy new evidence, we amend the generic diagnosis in detail, adding several key craniodental traits such as incisor procumbency and microdonty. These results indicate that Chilomys probably has a hidden additional diversity in large parts of the Colombian and Peruvian territories, inviting a necessary revision of the entire genus. [ABSTRACT FROM AUTHOR]

Ferns are known to have a lower incidence of mycorrhization than angiosperms. It has been suggested that this results from carbon being more limiting to fern growth than nutrient availability, but this assertion has not been tested yet. In the present study, we took advantage of a fertilization experiment with nitrogen and phosphorus on cloud forest plots of the Ecuadorean Andes for 15 years. A previous analysis revealed changes in the abundances of fern species in the fertilized plots compared to the control plots and hypothesized that this might be related to the responses of the mycorrhizal relationships to nutrient availability. We revisited the plots to assess the root‐associated fungal communities of two epiphytic and two terrestrial fern species that showed shifts in abundance. We sampled and analyzed the roots of 125 individuals following a metabarcoding approach. We recovered 1382 fungal ASVs, with a dominance of members of Tremellales (Basidiomycota) and Heliotales (Ascomycota). The fungal diversity was highly partitioned with little overlap between individuals. We found marked differences between terrestrial and epiphytic species, with the latter fundamentally missing arbuscular mycorrhizal fungi (AMF). We found no effect of fertilization on the diversity or relative abundance of the fungal assemblages. Still, we observed a direct impact of phosphorus fertilization on its concentration in the fern leaves. We conclude that fern–fungi relationships in the study site are not restricted by nutrient availability and suggest the existence of little specificity on the fungal partners relative to the host fern species. [ABSTRACT FROM AUTHOR]

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Thomasomys cinereus is the type species of Thomasomys, type genus of the sigmodontine tribe Thomasomyini. As currently recognized, Thomasomys includes 48 species, all of which are endemic to humid montane or premontane forests in the tropical Andes. Although it has been suggested that T. cinereus is a species complex, this hypothesis has yet to be critically evaluated. Herein we provide a revision of the species based on a qualitative assessment of external, craniodental, and soft morphological traits; morphometric analyses; a phylogenetic analysis based on cytochrome b gene sequences; species delimitation methods; and first-hand examination of type material. Our analyses of genetic data recovered four distinct clades within T. cinereus, one corresponding to T. cinereus sensu stricto (restricted to the montane forests delimited by the Río Marañón, Río Huancabamba, and Río Tablachaca in Cajamarca department, Peru) and three new species: Thomasomys lojapiuranus, sp. nov., from the montane forests of Piura department, Peru, and Loja province, Ecuador; T. shallqukucha, sp. nov., restricted to the Kañaris montane forests in the Peruvian department of Lambayeque; and T. pagaibambensis, sp. nov., restricted to the montane forests of Pagaibamba in Cajamarca department, Peru. These species can be distinguished by several discrete morphological traits of the skull, dentition, mandible, stomach, palatal rugae, and glans penis. Genetic distances among these taxa range from 5.06%–7.65% at the cytochrome b locus, and delimitation analyses based on cytochrome b sequence data support their recognition as distinct species. Our results suggest the existence of previously unsuspected dispersal barriers in the Andes of northern Peru, and they confirm that the Río Marañón is a formidable barrier that limits the distribution of species of Thomasomys as well as other sigmodontine rodents. [ABSTRACT FROM AUTHOR]

We describe two new species of glassfrogs of the genus Centrolene living in syntopy at La Enramada, province of Azuay, southwestern Ecuador. They were found in a small creek in montane evergreen forests at 2,900 m elevation. The first new species is distinguished from all other members of the genus Centrolene by having the following combination of characters: dentigerous process of vomer absent; sloping snout in lateral view; thick, white labial stripe and a faint white line between the lip and anterior í4 of body; humeral spine in adult males; parietal peritoneum covered by iridophores, visceral peritonea translucent (except pericardium); ulnar and tarsal ornamentation; dorsal skin shagreen with dispersed warts; uniform green dorsum with light yellowish green warts; and green bones. The new species is remarkable by being sister to a species from the opposite Andean versant, C. condor. The second new species is distinguished from all other Centrolene by having the following combination of characters: dentigerous process of vomer absent; round snout in lateral view; thin, yellowish labial stripe with a row of white tubercles between the lip and arm insertion, and a yellowish line between arm insertion and groin; uniform green dorsum; humeral spine in adult males; parietal peritoneum covered by iridophores, visceral peritonea translucent (except pericardium); dorsal skin shagreen with dispersed spicules; ulnar and tarsal ornamentation; and green bones. The second new species is sister to C. sabini and an undescribed species of Centrolene from southeastern Ecuador. Based on nuclear and mitochondrial DNA sequences, we present a new phylogeny for Centrolene and comment on the phylogenetic relationships inside the genus. [ABSTRACT FROM AUTHOR]

This article shows a set of agroecological practices that were incorporated into the archeological landscape of the Chanchán basin by pre-Hispanic Kañaris societies for 1200 years (240–1438 AD), a millennium before the arrival of the Incas, and that continue to be used in this landscape by certain indigenous communities of the 21st century. The use of archeobotanical techniques, contrasted with ethnobotanical sources, has allowed us to interpret how these societies structured their cultivation systems, agroecological practices, and landscape management, for the conservation of agroecosystems in the western Andean foothills. Agroecological legacies show how the stability, adaptability, and elasticity of Andean agriculture can be sustained under models of progressive intensification without this causing irreversible environmental damage in the agroecosystems. Kañaris agroecological practices configured the Chanchán landscape as a great cultural artifact, wherein the non-human agency of plants (cultivated and wild) was more than a mere adaptation to the niches culturally constructed by human populations. Non-humans are active subjects in recovering the functional and structural integrity of agroecosystems after a social or ecological disturbance. All this is part of landscape management based on an "Ecological Diversification Model", where plant species are adapted to the ecotones and ecological floors of the western Andean foothills, to diversify and increase the availability of food crops that are bioculturally appropriate given the present agrobiodiversity. [ABSTRACT FROM AUTHOR]

Aim: The biodiversity crisis has highlighted the need to assess and map biodiversity in order to prioritize conservation efforts. Clearwing butterflies (tribe Ithomiini) have been proposed as biological indicators for habitat quality in Neotropical forests, which contain the world's richest biological communities. Here, we provide maps of different facets of Ithomiini diversity across the Neotropics to identify areas of evolutionary and ecological importance for conservation and evaluate their overlap with current anthropogenic threats. Location: Neotropics. Methods: We ran species distribution models on a data set based on 28,986 georeferenced occurrences representing 388 ithomiine species to generate maps of geographic rarity, taxonomic, phylogenetic and Müllerian mimetic wing pattern diversity. We quantified and mapped the overlap of diversity hotspots with areas threatened by or providing refuge from current anthropogenic pressures. Results: The eastern slopes of the Andes formed the primary hotspot of taxonomic, phylogenetic and mimetic diversity, with secondary hotspots in Central America and the Atlantic Forest. Most diversity indices were strongly spatially correlated. Nevertheless, species‐poor communities on the Pacific slopes of the Andes also sheltered some of the geographically rarest species. Overall, tropical montane forests that host high species and mimetic diversity as well as rare species and mimicry rings appeared particularly under threat. Main conclusions: Remote parts of the Upper Amazon may act as refuges against current anthropogenic pressures for a limited portion of Ithomiini diversity. Furthermore, it is likely that the current threat status may worsen with ongoing climate change and deforestation. In this context, the tropical Andes occupy a crucial position as the primary hotspot for multiple facets of biodiversity for ithomiine butterflies, as they do for angiosperms, tetrapods and other insect taxa. Our results support the role of ithomiine butterflies as a suitable flagship indicator group for Neotropical butterfly diversity and reinforce the position of the tropical Andes as a flagship region for biodiversity conservation in general, and insect and butterfly conservation in particular. [ABSTRACT FROM AUTHOR]

Two new species of oribatid mites of the family Scheloribatidae – Urubambates jakobisp. nov. and Pachygena annaesp. nov. – are described, based on adults collected from upper soil and leaf litter in primary mountain forests in the Andes, Central Peru. Pachygena makarovae is supposedly a member of the genus Perscheloribates. [ABSTRACT FROM AUTHOR]

A new species of the neotropical genus Amboroppia (Oribatida, Oppiidae), A. andensis sp. nov. is described, based on adults collected from upper soil and leaf litter in primary mountain forest in the Andes, Central Peru. Additions to the generic diagnosis of Amboroppia are presented. [ABSTRACT FROM AUTHOR]

Species richness in the genus Pristimantis is underestimated due to the existence of morphologically cryptic species. This is worsened by the low sampling effort and the lack of studies using genetic markers. Here, we use molecular and morphological data to determine the phylogenetic relationships of a clade of Pristimantis distributed throughout montane tropical forests in the eastern Andes, from central Ecuador to northern Perú. We name this clade the Pristimantis trachyblepharis species group. Our results show that it comprises nine species, of which four are formally described and five are new. Four of these undescribed species are formally described here. The group is composed of miniaturized species, such as Pristimantis nanus sp. nov. , currently the smallest known species of the genus and the smallest vertebrate in Ecuador. As a first approach to understanding the evolutionary origin and implications of body-size reduction in Pristimantis , we here study the phylogenetic signal and evolutionary trends of body size within the genus. We also provide the first record of P. aquilonaris in Ecuador and we show, for the first time, the phylogenetic position of P. albujai , P. aquilonaris , P. minimus and P. trachyblepharis , which are also members of the P. trachyblepharis species group. [ABSTRACT FROM AUTHOR]

The humid mid-elevation montane forests (MMF) of the tropical Andes harbour high levels of plant species diversity, contributing to the exceptional overall diversity of the tropical Andean biodiversity hotspot. However, little is known about the diversification dynamics of MMF plant lineages compared to lineages in other Andean biomes. Here, we use Macrocarpaea (Gentianaceae) to investigate patterns of plant diversification in the MMF, using molecular dating with fossils and secondary calibration (from a family-wide phylogenetic analysis of Gentianaceae). We sequenced 76 of 118 recognized Macrocarpaea spp. for six markers to reconstruct a time-calibrated phylogenetic tree and infer the historical biogeography of Macrocarpaea using maximum-likelihood methods implemented in BioGeoBEARS, estimating diversification rates through time and among lineages with BAMM. We document a rapid radiation of Macrocarpaea in Andean MMF coinciding with rapid colonization and range expansion across the entire distribution of the genus in the Andes starting 7.2 Mya. Our results support allopatric founder-event speciation as the dominant process contributing to geographical phylogenetic structure across the genus. We propose that establishment of the MMF in the late Miocene, when the Andes attained critical elevation to modify regional climates, provided large new areas of suitable habitat for Macrocarpaea to quickly colonize and expand through repeated founder-events. We suggest that this wave of colonization and range expansion triggered rapid diversification, and, as the MMF became progressively occupied, the diversification rate slowed. Our study also supports the idea that MMF plant radiations are older and more slowly evolving than the quickly evolving lineages in the recent Andean high-elevation grasslands. [ABSTRACT FROM AUTHOR]

Aim: Plant distributions are influenced by species' ability to colonize new areas via long‐distance dispersal and propensity to adapt to new environments via niche evolution. We use otobas, a clade of ecologically dominant trees found in low‐to mid‐elevation wet forests, as a system to understand the relative importance of these processes within the Neotropics. Location: Neotropics and global. Taxon: Otoba and entire Myristicaceae. Methods: We resolve the first phylogeny of Otoba the Angiosperms353 loci and plastome sequences from 13 accessions representing seven species. We pair this with the most densely sampled phylogeny of Myristicaceae to date, inferred using publicly available plastid data. We then use environmental niche modelling, biogeographical reconstruction, phylogenetic principle components analysis and Ornstein–Uhlenbeck models to infer biogeography and examine patterns of niche evolution. Results: Myristicaceae has an Old World origin, with a single expansion into the Americas. Divergence dates, fossil evidence and a notable lack of long‐distance dispersal are consistent with a Boreotropical origin of Neotropical Myristicaceae. Mirroring the rarity of dispersal at the family level, Otoba's biogeography is marked by few biogeographical events: two expansions into Central America from a South American ancestor and a single dispersal event across the Andes. This limited movement contrasts with rapid climatic niche evolution, typically occurring across geographically proximate habitats. Main conclusion: Contrasting with previous studies, long‐distance dispersal does not need to be invoked to explain the pantropical distribution of Myristicaceae, nor the biogeography of Otoba. This likely results from the family's relatively large seeds that are dispersed by large‐bodied vertebrates. Instead, rapid niche evolution in Otoba has facilitated its occurrence throughout mesic habitats of the northern Neotropics, including the Amazon rainforest and Andean montane forests. Otoba adds to a growing group of Neotropical plant clades in which climate adaptation following local migration is common, implying an important role of niche evolution in the assembly of the Neotropical flora. [ABSTRACT FROM AUTHOR]

Premise: Environmental gradients of mountains are reflected in traits that are common to high‐elevation plants worldwide. Closely related species of Senecio from the equatorial Andes grow as broad‐leaved climbers in montane forests, basal broad‐leaved rosette herbs in azonal marshy habitats, and ascending, narrow‐leaved subshrubs in high‐elevation páramo. Habitat variation along the elevational gradient enables testing whether modifications in leaf and stem functional traits among species were driven by contrasting environmental conditions. Methods: We used quantitative analyses to describe changes in morphological and anatomical traits of leaves and stems in 10 species from various habitats. We applied univariate (linear regression, hierarchical ANOVA) and multivariate (NMDS ordination, permutational MANOVA) techniques to examine the correlation of traits with the species' habitats and elevation. Results: Species from the humid and frost‐free montane forest develop xylem optimized for transport efficiency by increasing the internal diameter and length of the conduits. In contrast, páramo species are optimized toward hydraulic safety by producing narrower conduits and are more likely to prevent the risk of frost‐induced cavitation. Moreover, species from the high‐elevation páramo habitats present a set of water‐transport‐related anatomical traits of leaf lamina, allowing for efficient regulation of transpiration losses. Conclusions: Morphological and anatomical traits of leaves and stems in species of Senecio inhabiting montane forests and high‐elevation páramo in the equatorial Andes demonstrate a trade‐off between hydraulic safety and efficiency of water transport. [ABSTRACT FROM AUTHOR]