1. Novel pathogenic variants in an Indian cohort with epidermolysis bullosa: Expanding the genotypic spectrum.
- Author
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Nilay, Mayank, Saxena, Deepti, Mandal, Kausik, Moirangthem, Amita, and Phadke, Shubha R.
- Subjects
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GENOTYPES , *EPIDERMOLYSIS bullosa , *PHENOTYPES , *HEREDITY , *MOLECULAR diagnosis - Abstract
Epidermolysis bullosa (EB) is a genodermatosis characterized by skin fragility and blisters with variable severity. Patients with Dystrophic EB (DEB) or Junctional EB (JEB) mainly present to clinic due to greater functional impairment. Pathogenic sequence variations in COL7A1 are implicated in DEB. We have tried to decipher the molecular spectrum and genotype phenotype correlation of 21 Indian patients with EB. Next generation sequencing (NGS) was performed to determine the pathogenic variants. Sanger sequencing was also done for validation of the variants in eleven individuals. Pathogenic variants were detected in 20 individuals (diagnostic yield of 95%). Majority of them (90%) had sequence variation in COL7A1 while two had pathogenic variants in ITGB4 and KRT14 respectively. Out of the 18 patients confirmed to have DEB, 3 had Dominant DEB (DDEB) whereas 15 patients had Recessive DEB (RDEB). Amongst 23 sequence variations identified, 12 were found to be novel (3 were missense, 5 were premature termination codon variants while 4 were splice-site changes). Genotype phenotype correlation was noted with milder manifestations in those with dominant inheritance types. Exact molecular diagnosis can be ascertained by NGS in majority of cases. • Twenty one individuals clinically suspected with Epidermolysis bullosa(EB) were evaluated for pathogenic variations. • First of its kind study in the subcontinent as molecular diagnosis was done by NGS without undergoing painful skin biopsies. • Majority were found to have Dystrophic EB and recessive mode of inheritance. • Identified 52% novel pathogenic variants in the cohort, further expanding the genotypic spectrum of such genodermatoses. • ~40% of the mutated alleles in COL7A1 were located in exons 3–4 and 73–75 suggesting these may be the hot-spots in Indian population. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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