1. Haplotype‐resolved DNA methylome of African cassava genome.
- Author
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Zhong, Zhenhui, Feng, Suhua, Mansfeld, Ben N., Ke, Yunqing, Qi, Weihong, Lim, Yi‐Wen, Gruissem, Wilhelm, Bart, Rebecca S., and Jacobsen, Steven E.
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CASSAVA , *DNA , *GENOMES , *RNA polymerases , *DNA methylation , *GENE expression , *DNA methyltransferases - Abstract
Interestingly, complete ASE genes showed higher gene body CHG methylation than partial ( I P i = 0.05) and non-ASE genes and partial ASE genes showed lower CG methylation than others ( I P i = 3.8 e-08, Figure 1g), suggesting that DNA methylation alterations between alleles from different haplotypes are frequently accompanied with ASEs. Since the cassava genome is highly heterozygous, DNA methylome of the haplotype-collapsed genome misses many features of the methylome. Keywords: haplotype-resolved; DNA methylation; cassava EN haplotype-resolved DNA methylation cassava 247 249 3 01/31/23 20230201 NES 230201 Cytosine DNA methylation is involved in transposable element (TE) silencing, imprinting and X-chromosome inactivation. [Extracted from the article]
- Published
- 2023
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