• Bulk SOC increased under long-term organic fertilization. • No SOC accumulated in the MAOM fraction (<6.3 µm) over a 36-year period. • Bulk SOC increase under organic fertilization was solely attributed to the labile POM fractions. • oPOM-C contents are highly dynamic and depend on farming system. Agricultural management of soils has led to severe losses of soil organic matter (SOM), accompanied by an increased release of CO 2 into the atmosphere and a reduction of soil fertility. Especially under the aspect of global warming and the increasing demand for food, there is a need for sustainable management options increasing soil organic carbon (SOC) storage in agricultural soils, but knowledge gaps exist regarding C persistence in, and its transfer between functional SOC pools, within different farming systems. Here we report on impacts of different farming systems on the temporal dynamics of SOM fractions within the DOK long-term trial (Switzerland), from 1982 to 2017. A purely minerally (CONMIN), a minerally and organically (CONFYM), and a purely organically fertilized farming system (BIODYN) were compared with an unfertilized control (NOFERT). We separated archived soils from the Haplic Luvisol (0–20 cm depth) into particulate (POM) and mineral-associated OM (MAOM) fractions, via physical fractionation, and analyzed the chemical composition of selected fractions via solid-state 13C CPMAS-NMR spectroscopy. We demonstrate that under none of the analyzed farming systems, additional SOC was sequestered in the clay-sized MAOM fraction (<6.3 µm) over a period of 36 years. In all fertilized systems, the amount of SOC in this pool did not change, but strongly decreased in NOFERT (-27%). Bulk SOC increased in BIODYN (+13%) and CONFYM (+5%), but decreased in CONMIN (-8%) and NOFERT (-20%). As no additional SOC accumulated in the clay-sized MAOM fraction, this implies that bulk SOC increases were solely stored within labile POM fractions. NMR spectra showed comparable POM chemical compositions between different systems. Differences in fertilizer quality (BIODYN = composted farmyard manure vs CONFYM = stacked farmyard manure + mineral fertilizer) and the omission of pesticides resulted in better conditions for POM stabilization and consequently significantly higher C contents of occluded POM (oPOM) within aggregates, in BIODYN. However, this labile fraction is at high risk of being lost within a few days, as illustrated by the strong annual oPOM-C content fluctuations depending on the timing of soil sampling after harvest. The highest post-harvest oPOM-C losses in BIODYN indicate the higher dynamics compared to CONFYM. It is anticipated that only sustainable fertilization methods with continuous application of solely organic fertilizers in the long-run can maintain SOC in the labile POM fractions at elevated levels, thereby ensuring soil fertility. It also illustrates the need for prevention of major losses by careful management of the labile POM fractions, as this OM could associate with fine mineral particles at a later stage and thus contribute to OC sequestration in the stable SOC pool. Overall, the potential of arable soils to accumulate stable OC for long-term sequestration is questioned. [ABSTRACT FROM AUTHOR]