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Soils are the basis of life on land and the ways in which we manage them for crop production, impact their role, functions and quality. Conventional farming uses industrial inputs to a level that is economically justified, whilst organic farming systems avoid mineral fertilizers and synthetic chemical pesticides. This study investigates the long-term effect of organic and conventional farming systems on soil quality. The DOK trial (bioDynamic, bioOrganic, Konventionell (German for conventional)) running since 1978 in Therwil (CH), compares bioorganic (BIOORG), biodynamic (BIODYN), and conventional (CONFYM) farming systems at two farmyard manure intensities corresponding to 0.7 and 1.4 livestock units per hectare with a purely mineral fertilized system (CONMIN) and an unfertilized control (NOFERT). The treatments in the DOK trial vary in plant protection and receive system-specific organic matter inputs differing in rate and quality. With this work, we revisit the soil organic carbon (SOC) dynamics across 42 years and redefine the previous perception of mainly declining SOC contents after 21 years of organic and conventional management (Fliessbach et al. 2007). After 42 years, we found SOC contents to be increased in BIODYN 1.4 and to a lesser extent also in BIOORG 1.4. CONFYM 1.4 showed stable SOC contents, while systems fertilized with manure of 0.7 livestock units and CONMIN lost SOC. SOC loss was highest in NOFERT. Enhanced biological soil quality under organic and particularly biodynamic management highlights the close link between soil biology and SOC changes. The impact of farming systems on SOC was detectable after 2 decades of continuous management. We conclude that recycling manure at a level of 1.4 livestock units per hectare permits maintenance of SOC levels and that composting manure, as performed in BIODYN 1.4, helps to further increase SOC levels and improve biological soil quality. [ABSTRACT FROM AUTHOR]

• Bulk SOC increased under long-term organic fertilization. • No SOC accumulated in the MAOM fraction (<6.3 µm) over a 36-year period. • Bulk SOC increase under organic fertilization was solely attributed to the labile POM fractions. • oPOM-C contents are highly dynamic and depend on farming system. Agricultural management of soils has led to severe losses of soil organic matter (SOM), accompanied by an increased release of CO 2 into the atmosphere and a reduction of soil fertility. Especially under the aspect of global warming and the increasing demand for food, there is a need for sustainable management options increasing soil organic carbon (SOC) storage in agricultural soils, but knowledge gaps exist regarding C persistence in, and its transfer between functional SOC pools, within different farming systems. Here we report on impacts of different farming systems on the temporal dynamics of SOM fractions within the DOK long-term trial (Switzerland), from 1982 to 2017. A purely minerally (CONMIN), a minerally and organically (CONFYM), and a purely organically fertilized farming system (BIODYN) were compared with an unfertilized control (NOFERT). We separated archived soils from the Haplic Luvisol (0–20 cm depth) into particulate (POM) and mineral-associated OM (MAOM) fractions, via physical fractionation, and analyzed the chemical composition of selected fractions via solid-state 13C CPMAS-NMR spectroscopy. We demonstrate that under none of the analyzed farming systems, additional SOC was sequestered in the clay-sized MAOM fraction (<6.3 µm) over a period of 36 years. In all fertilized systems, the amount of SOC in this pool did not change, but strongly decreased in NOFERT (-27%). Bulk SOC increased in BIODYN (+13%) and CONFYM (+5%), but decreased in CONMIN (-8%) and NOFERT (-20%). As no additional SOC accumulated in the clay-sized MAOM fraction, this implies that bulk SOC increases were solely stored within labile POM fractions. NMR spectra showed comparable POM chemical compositions between different systems. Differences in fertilizer quality (BIODYN = composted farmyard manure vs CONFYM = stacked farmyard manure + mineral fertilizer) and the omission of pesticides resulted in better conditions for POM stabilization and consequently significantly higher C contents of occluded POM (oPOM) within aggregates, in BIODYN. However, this labile fraction is at high risk of being lost within a few days, as illustrated by the strong annual oPOM-C content fluctuations depending on the timing of soil sampling after harvest. The highest post-harvest oPOM-C losses in BIODYN indicate the higher dynamics compared to CONFYM. It is anticipated that only sustainable fertilization methods with continuous application of solely organic fertilizers in the long-run can maintain SOC in the labile POM fractions at elevated levels, thereby ensuring soil fertility. It also illustrates the need for prevention of major losses by careful management of the labile POM fractions, as this OM could associate with fine mineral particles at a later stage and thus contribute to OC sequestration in the stable SOC pool. Overall, the potential of arable soils to accumulate stable OC for long-term sequestration is questioned. [ABSTRACT FROM AUTHOR]