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The role of balancing selection is a long-standing evolutionary puzzle. Balancing selection is a crucial evolutionary process that maintains genetic variation (polymorphism) over extended periods of time; however, detecting it poses a significant challenge. Building upon the Polymorphism-aware phylogenetic Models (PoMos) framework rooted in the Moran model, we introduce a PoMoBalance model. This novel approach is designed to disentangle the interplay of mutation, genetic drift, and directional selection (GC-biased gene conversion), along with the previously unexplored balancing selection pressures on ultra-long timescales comparable with species divergence times by analyzing multi-individual genomic and phylogenetic divergence data. Implemented in the open-source RevBayes Bayesian framework, PoMoBalance offers a versatile tool for inferring phylogenetic trees as well as quantifying various selective pressures. The novel aspect of our approach in studying balancing selection lies in polymorphism-aware phylogenetic models' ability to account for ancestral polymorphisms and incorporate parameters that measure frequency-dependent selection, allowing us to determine the strength of the effect and exact frequencies under selection. We implemented validation tests and assessed the model on the data simulated with SLiM and a custom Moran model simulator. Real sequence analysis of Drosophila populations reveals insights into the evolutionary dynamics of regions subject to frequency-dependent balancing selection, particularly in the context of sex-limited color dimorphism in Drosophila erecta. [ABSTRACT FROM AUTHOR]

Different frequencies amongst codons that encode the same amino acid (i.e. synonymous codons) have been observed in multiple species. Studies focused on uncovering the forces that drive such codon usage showed that a combined effect of mutational biases and translational selection works to produce different frequencies of synonymous codons. However, only few have been able to measure and distinguish between these forces that may leave similar traces on the coding regions. Here, we have developed a codon model that allows the disentangling of mutation, selection on amino acids and synonymous codons, and GC-biased gene conversion (gBGC) which we employed on an extensive dataset of 415 chordates and 191 arthropods. We found that chordates need 15 more synonymous codon categories than arthropods to explain the empirical codon frequencies, which suggests that the extent of codon usage can vary greatly between animal phyla. Moreover, methylation at CpG sites seems to partially explain these patterns of codon usage in chordates but not in arthropods. Despite the differences between the two phyla, our findings demonstrate that in both, GC-rich codons are disfavored when mutations are GC-biased, and the opposite is true when mutations are AT-biased. This indicates that selection on the genomic coding regions might act primarily to stabilize its GC/AT content on a genome-wide level. Our study shows that the degree of synonymous codon usage varies considerably among animals, but is likely governed by a common underlying dynamic. [ABSTRACT FROM AUTHOR]

The European Union has committed to achieving carbon neutrality by 2050 and green hydrogen has been chosen as a priority vector for reaching that goal. Accordingly, Portugal has drafted a National Hydrogen Strategy laying out the various steps for the development of a green hydrogen economy. One element of this strategy is the development of a gigawatt-scale hydrogen production facility powered by dedicated renewable electricity sources. This work presents an analysis of the technical and economic feasibility of a facility consisting of a gigawatt-scale polymer electrolyte membrane electrolyser powered by solar photovoltaic and wind electricity, using the energy analysis model EnergyPLAN. Different capacities and modes of operation of the electrolyser are considered, including the complementary use of grid electricity as well as different combinations of renewable power, resulting in a total of 72 different configurations. An economic analysis is conducted addressing the related annualised capital expenditures, maintenance, and variable costs, to allow for the determination of the levelised cost of hydrogen for the different configurations. This analysis shows the conditions required for maximising annual hydrogen production at the lowest levelised cost of hydrogen. The best options consist of an electrolyser powered by a combination of solar photovoltaic and wind, with limited exchanges with the electricity grid, and a levelised cost of hydrogen in the range 3.13–3.48 EUR/kg. [ABSTRACT FROM AUTHOR]