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Climate reconstructions by data assimilation need to accommodate for sensitivities to proxies and prior estimates because models are uncertain and proxies are spatiotemporally limited. This study examines these sensitivities using multiple climate model simulations and different combinations of proxies (i.e., corals, ice cores, and tree‐ring cellulose). Experiments were conducted using an offline data assimilation approach; the results showed annual variations in the global distribution of surface air temperature and precipitation amount from 850 to 2000. Standard deviations of surface air temperature and precipitation amount during the entire period differed by up to 36% due to prior estimates. Experiments with different types of proxies showed that the El Niño‐like distribution of positive anomalies in the central to eastern tropical Pacific may only be adequately reproduced in experiments with corals, and not experiments without corals. The correlation coefficient of the NINO.3 index from 1971 to 2000 between experiments with corals and the Japanese 55‐year Reanalysis (JRA‐55) was 0.81 at maximum. By contrast, the correlation coefficient between experiments without corals and JRA‐55 was a maximum of 0.19. Key Points: Climate reconstruction by data assimilation illustrates annual variations in surface air temperature and precipitation from 850 to 2,000Spatiotemporal differences in climate reconstruction were compared based on prior estimatesThe impact of proxies on the results of past reproduced El Niño cases from 1971 to 2000 was validated [ABSTRACT FROM AUTHOR]