2,636 results on '"A. Jana"'
Search Results
2. Assessing the Impact of COVID-19 on Pregnancy and Maternal Outcomes: A Slovak National Study
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Adriána Goldbergerová, Ladislav Kováč, Cecília Marčišová, Miroslav Borovský, Dominika Kotríková, Ľubomíra Izáková, Ján Mikas, Jana Námešná, Zuzana Krištúfková, and Alexandra Krištúfková
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COVID-19 ,pregnancy ,SARS-CoV-2 ,maternal and neonatal health ,pandemic ,Reproduction ,QH471-489 - Abstract
Background: The COVID-19 pandemic highlighted the global challenge of inadequate data on SARS-CoV-2’s effects on pregnant women and their infants. In response, Slovakia, along with other countries, launched a nationwide study to assess the incidence, characteristics, and outcomes of SARS-CoV-2 infection during pregnancy. Methods: We conducted a national observational descriptive study of SARS-CoV-2 positive cases among pregnant women from the pandemic’s onset to its conclusion. In collaboration with the Public Health Office of the Slovak Republic, we identified 1184 pregnant women who tested positive for SARS-CoV-2 and contacted them for participation. Results: Among the 240 participating SARS-CoV-2-positive pregnant women, 13 required hospitalizations, with an increased need for intensive care and respiratory support. However, the absolute risk of poor outcomes remained low. Higher maternal age and infection during the third trimester emerged as key risk factors for hospitalization. A symptomatic course was dominant, with fatigue (70%), headache (58%), and fever (56%) as the leading symptoms. While maternal and neonatal outcomes were generally favourable, a slight increase in caesarean sections and preterm births suggests an indirect impact on maternity care. Vaccination during pregnancy correlated with reduced symptoms and no hospitalizations. Elevated CRP levels were common among infected women, while ultrasound findings remained normal. Conclusions: This study offers a multi-dimensional view of pregnancy during the pandemic, capturing both the mother’s personal concerns and the objective insights from prenatal and labour care settings. The findings suggest that most pregnant women with SARS-CoV-2 experience mild to moderate illness, offering reassurance to clinicians about generally favourable maternal and neonatal outcomes while underscoring the need for vigilance in rare severe cases.
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- 2024
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3. Investigation of the Measurement Systems’ Suitability for the Non-Destructive Measurement of Complex Polymer-Based Micro and Nanostructures
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Selina Burkert, Lukas Schwörer, Tim Schubert, Jana Grundmann, David Stein, and Andreas Heinrich
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measurement analysis ,scanning electron microscopy ,white light interferometry ,atomic force microscopy ,micro computed tomography ,optical coherence tomography ,Electronic computers. Computer science ,QA75.5-76.95 ,Applied mathematics. Quantitative methods ,T57-57.97 - Abstract
In the fabrication of optical polymer-based components, such as diffractive gratings and waveguides, high throughput and high precision are required. The non-destructive evaluation of these complex polymer-based structures is a significant challenge. Different measurement techniques can measure the structure geometry directly or via its functionality indirectly. This study investigates various measurement techniques aimed at assessing these structures from 200 nm up to 20 µm. Environmental scanning electron microscopy (ESEM), white light interferometry (WLI), atomic force microscopy (AFM), micro computed tomography (µCT), optical coherence tomography (OCT), phase contrast microscopy (PCM), and Mueller matrix ellipsometry (MME) are investigated for their practical limits of lateral resolution and aspect ratio. The impact of the specimens’ complexity factors, including structure width and aspect ratio, on measurement quality is discussed. A particular focus of this study is on the suitability of different measurement systems for evaluating undercuts and enclosed structures while considering structure size, slant angle, and cover thickness. The aim is to discuss the specific advantages of the individual measurement systems and their application areas in order to be able to quickly select suitable measurement systems for a non-destructive evaluation of polymer-based micro and nanostructures.
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- 2024
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4. From Genomic Exploration to Personalized Treatment: Next-Generation Sequencing in Oncology
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Vishakha Vashisht, Ashutosh Vashisht, Ashis K. Mondal, Jana Woodall, and Ravindra Kolhe
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next-generation sequencing ,whole-genome sequencing ,whole-exome sequencing ,RNA sequencing ,personalized treatment ,Biology (General) ,QH301-705.5 - Abstract
Next-generation sequencing (NGS) has revolutionized personalized oncology care by providing exceptional insights into the complex genomic landscape. NGS offers comprehensive cancer profiling, which enables clinicians and researchers to better understand the molecular basis of cancer and to tailor treatment strategies accordingly. Targeted therapies based on genomic alterations identified through NGS have shown promise in improving patient outcomes across various cancer types, circumventing resistance mechanisms and enhancing treatment efficacy. Moreover, NGS facilitates the identification of predictive biomarkers and prognostic indicators, aiding in patient stratification and personalized treatment approaches. By uncovering driver mutations and actionable alterations, NGS empowers clinicians to make informed decisions regarding treatment selection and patient management. However, the full potential of NGS in personalized oncology can only be realized through bioinformatics analyses. Bioinformatics plays a crucial role in processing raw sequencing data, identifying clinically relevant variants, and interpreting complex genomic landscapes. This comprehensive review investigates the diverse NGS techniques, including whole-genome sequencing (WGS), whole-exome sequencing (WES), and single-cell RNA sequencing (sc-RNA-Seq), elucidating their roles in understanding the complex genomic/transcriptomic landscape of cancer. Furthermore, the review explores the integration of NGS data with bioinformatics tools to facilitate personalized oncology approaches, from understanding tumor heterogeneity to identifying driver mutations and predicting therapeutic responses. Challenges and future directions in NGS-based cancer research are also discussed, underscoring the transformative impact of these technologies on cancer diagnosis, management, and treatment strategies.
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- 2024
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5. Exploring Apparel E-Commerce Unethical Return Experience: A Cross-Country Study
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José Magano, Jana Turčinkova, Mário C. Santos, Roxana Correia, and Mikhail Serebriannikov
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wardrobing ,unethical behavior ,moral hazard ,online apparel customer experience ,Business ,HF5001-6182 - Abstract
This study examines the relationships between socio-demographic factors, purchase frequency, internet expertise, and unethical return behavior in apparel e-commerce, with a particular focus on the act of wardrobing—wearing and then returning used apparel. The research involved a survey of 1026 online apparel consumers from Portugal and the Czech Republic. The results show that frequent buyers, internet-savvy users, women and younger e-consumers report more satisfactory return experiences. However, several e-consumers engage in wardrobe shopping, with higher rates observed among males, internet-savvy users and youth. There are differences between the countries studied: in the Czech sample, men and advanced internet users are more likely to engage in wardrobing, while in the Portuguese sample, it is more prevalent among younger e-consumers. The results also document that, overall, men are seven times more likely to practice unethical return, while increasing age decreases the likelihood. The originality of the study lies in its approach and findings, which contribute to the understanding of post-purchase behavior and moral hazards in e-commerce and highlight the need for retailers to balance return policies that prevent abuse while maintaining customer satisfaction. Recommendations are made for improving loyalty programs and personalizing the e-shopping experience to minimize returns and promote ethical consumer behavior. Further research is suggested to develop these findings and improve return management in apparel e-commerce.
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- 2024
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6. Beyond Compliance: A Deep Dive into Improving Sustainability Reporting Quality with LCSA Indicators
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Suzana Ostojic, Jana Gerta Backes, Markus Kowalski, and Marzia Traverso
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life cycle sustainability assessment (LCSA) ,sustainability reporting ,emission trading system (ETS) ,corporate sustainability reporting directive (CSRD) ,EU taxonomy ,construction sector ,Mathematics ,QA1-939 ,Applied mathematics. Quantitative methods ,T57-57.97 - Abstract
This study addresses the critical need for improved sustainability reporting in the construction sector, focusing on the integration of Life Cycle Sustainability Assessment (LCSA) indicators to enhance reporting quality and promote standardization. The increasing regulatory pressure from the European Commission, particularly in sustainability reporting, has intensified the demand for corporate transparency. Despite these efforts, many companies still face challenges in implementing robust sustainability performance measures. This research employs a systematic literature review alongside the case studies of three leading German construction companies to critically assess the current reporting practices and explore the integration potential of LCSA indicators. The findings highlight a significant gap between the existing sustainability disclosures and LCSA indicators, with only 7–19% of the assessed indicators being integrated into the current reporting practices. Although some consistency in reporting themes and qualitative disclosures is evident, the misalignment with LCSA indicators underscores the need for further integration of standardized, life cycle-based metrics. This study concludes that collaborative efforts among companies, policymakers, and LCSA researchers are required to bridge this gap, ensuring the adoption of the existing, scientifically robust indicators that enhance the precision, comparability, and transparency of sustainability reporting in the construction sector.
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- 2024
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7. A Prospective Self-Report Survey-Based Cohort Study on Factors That Have an Influence on Tinnitus
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Jana V. P. Devos, Marcus L. F. Janssen, A. Miranda L. Janssen, Catharine A. Hellingman, and Jasper V. Smit
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tinnitus ,cohort ,demographics ,comorbidities ,personalized care ,Otorhinolaryngology ,RF1-547 - Abstract
Background: Limited information is available on factors that affect the burden tinnitus. The aim of this study is to investigate the association between tinnitus burden and demographic, patient-specific and tinnitus characteristics. Secondly, it was examined which variables could predict a change in tinnitus burden after 12 months. Method: In a prospective Dutch cohort of 383 tinnitus patients seeking medical help, tinnitus complaints, demographics, tinnitus characteristics, psychological wellbeing and quality of life were assessed using an online self-report survey at three timepoints (start, 6 months, 12 months). The main outcome variables for tinnitus burden are the Tinnitus Questionnaire (TQ) and Visual Analog Scale (VAS) for tinnitus burden and loudness. Results: Several variables (time, sex, education level, life events, anxiety and depression, sleep issues, tinnitus loudness, hearing impairment and treatment) were significantly associated with tinnitus burden. Additionally, tinnitus burden after 12 months was associated with anxiety, following treatment, sleep issues, negative life events and hearing impairment (increase) and anxiety, total of life events and environmental quality of life (decrease) predicted the tinnitus burden after 12 months. Conclusions: Several factors, such as education level, life events, psychological factors and sleep quality, are related to tinnitus burden and can predict tinnitus burden over time.
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- 2024
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8. Oxygen Vacancy Engineering and Its Impact on Resistive Switching of Oxide Thin Films for Memory and Neuromorphic Applications
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Biswajit Jana and Ayan Roy Chaudhuri
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thin films ,oxides ,oxygen vacancies ,resistive switching ,memristor ,memory storage ,Electronic computers. Computer science ,QA75.5-76.95 ,Electric apparatus and materials. Electric circuits. Electric networks ,TK452-454.4 - Abstract
Oxygen vacancy engineering in metal oxides is a propitious route to modulate their resistive switching properties for memory and neuromorphic applications. This review provides an account of the research works on tailoring RS behavior in oxide thin-film-based memristor devices by oxygen vacancy engineering. We discuss the recent research progress on controlling oxygen vacancy concentration in metal oxide thin films and its impact on their resistive switching properties for application in electronic memory and neuromorphic computing devices.
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- 2024
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9. New Onset Inflammatory Bowel Disease Risk Following Bariatric Surgery: A Systematic Review and Meta-Analysis of Observational Studies
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Wafa A. Aldhaleei, Tarek Odah, Nader Bakheet, Heather Jett, Jana G. Hashash, Michael B. Wallace, Vivek Kumbhari, Francis A. Farraye, and Akshaya Srikanth Bhagavathula
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Crohn’s disease ,ulcerative colitis ,Roux-en-Y ,sleeve gastrectomy ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Background: While bariatric surgery may reduce obesity-associated inflammation, alterations in gut microbiome and nutrition could impact inflammatory bowel disease (IBD) risk. This study aimed to investigate the association between bariatric surgery and new onset IBD. Methods: A systematic review and meta-analysis of observational studies was conducted from inception to 31 January 2024. Risk estimates were pooled using a DerSimonian and Laird random-effects model, and adjusted hazards ratios (HRs) with corresponding 95% confidence interval (CI) were reported. The modified Newcastle-Ottawa Quality Assessment Scale (NOS) was used to examine the risk of bias. Results: Of 98 articles screened, four studies comprising 4,727,600 participants were included in the systematic review and two studies in the meta-analysis. Included studies had high quality and low risk of bias according to NOS. The pooled analysis revealed a significant risk of new onset IBD (HR: 1.28, 95% CI: 1.04–1.53, I2 = 74.9%), particularly Crohn’s disease (HR: 1.75, 1.59–1.92, I2 = 0), following bariatric surgery, but no significant risk of ulcerative colitis (HR: 0.93, 0.75–1.11, I2 = 11.5%). Conclusions: This meta-analysis found that bariatric surgery was associated with a higher risk of developing Crohn’s disease. Patients should be counseled on IBD risk pre-surgery, and symptomatic patients should be evaluated post-surgery to enable early diagnosis and management.
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- 2024
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10. Next-Generation-Sequencing of the Human B-Cell Receptor Improves Detection and Diagnosis and Enhances Disease Monitoring in Patients with Gastric Mucosa-Associated Lymphoid Tissue Lymphoma
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Chidimma Agatha Akpa, Cora Husemann, Chris Allen, Ann-Christin von Brünneck, Jana Ihlow, and Michael Hummel
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B-cell receptor ,next-generation sequencing ,gastric mucosa-associated lymphoid tissue lymphoma ,minimal residual disease ,Pathology ,RB1-214 - Abstract
Mucosa-associated lymphoid tissue (MALT) lymphomas are slow-growing B-cell lymphomas mainly diagnosed in the stomach and termed gastric MALT lymphoma (G-MALT). Despite histological evaluation, immunostaining, and additional B-cell clonality analysis by fragment analysis, a clear-cut diagnosis is not feasible in all cases, especially for clinical follow-up of patients after treatment. We examined clonally rearranged immunoglobulin heavy- and light-chain gene sequences of 36 genomic DNA samples from six different patients obtained at different time points over the course of several years using the OncomineTM B-cell receptor pan-clonality next-generation sequencing (NGS) assay. Each case consisted of samples diagnosed with G-MALT and samples without evidence of lymphoma, based on histological examinations. We show a robust correlation (100%) of the results between the applied NGS method and histology-diagnosed G-MALT-positive patients. We also detected malignant clonotypes in samples where histology assessment failed to provide clear evidence of G-MALT (15 out of 19 samples). Furthermore, this method revealed malignant clonotypes much earlier in the disease course, with NGS of the immunoglobulin light chain being crucial in complementing immunoglobulin heavy-chain analysis. Hence, the value of NGS in routine lymphoma diagnostics is greatly significant and can be explored in order to provide better diagnoses and proffer the early detection of lymphoma relapse.
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- 2024
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11. A Comparison of the Efficacy of Online HAPIFED versus Online Cognitive Behavioural Therapy for Binge Eating Disorder: A Randomized Controlled Trial
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Felipe Q. da Luz, Mohammed Mohsin, Paula C. Teixeira, Edilaine dos Santos, Tamiris Gaeta, Silvia Ferrari, Kayo Martin, Andréia Dias, Tatiana A. Jana, Leticia S. Marinho, Isabella Lobo, Luisa Pascoareli, Táki Cordás, and Phillipa Hay
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binge eating disorder ,eating disorders ,treatment ,therapy ,online ,overweight ,Food processing and manufacture ,TP368-456 ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
The efficacy of two different online treatment programs for people with binge eating disorder (BED) was compared. One hundred and nineteen adults with BED were randomized to treatments based on the Healthy Approach to Weight Management and Food in Eating Disorders (HAPIFED) or cognitive behavioural therapy (CBT). The treatments were delivered via videoconferencing in 10 groups with approximately 12 participants in each group. Each group included 13 treatment sessions and two follow-up sessions. Participants’ self-reported eating disorder behaviours/psychopathology, general mental health, and weight were assessed at pre-treatment, the end of treatment, a 3-month follow-up, and a 6-month follow-up. The participants in both treatments similarly reduced objective and subjective binge eating episodes from pre-treatment to the end of treatment. There were no significant differences in weight loss for the participants in either treatment. The participants in both treatments had reduced levels of loss of control over eating, eating disorder psychopathology, depression, psychological stress, and difficulties in emotion regulation from pre-treatment to the end of treatment. Treatments based on the HAPIFED or CBT delivered via videoconferencing can reduce binge eating and improve mental health in people with BED.
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- 2024
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12. Application of Pulsed Electric Field During Malting: Impact on Fusarium Species Growth and Mycotoxin Production
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Nela Prusova, Marcel Karabin, Lukas Jelinek, Jana Chrpova, Jaroslava Ovesna, Pavel Svoboda, Tereza Dolezalova, Adam Behner, Jana Hajslova, and Milena Stranska
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pulsed electric field ,mycotoxins ,Fusarium micromycetes ,U-HPLC-HRMS/MS ,RT-PCR ,malting ,Medicine - Abstract
The increasing contamination of cereals by micromycetes and mycotoxins during malting still poses an unresolved food safety problem. This study characterises the potential of the novel, rapidly developing food production technology of Pulsed Electric Field (PEF) to reduce the viability of Fusarium fungi and the production of mycotoxins during malting. Barley, artificially inoculated with four Fusarium species, was treated by PEF with two different intensities and then malted using a standard Pilsner-type technology. Concentrations of fungi were quantified by RT-PCR, expression of fungal growth-related genes was assessed using mRNA sequencing, and mycotoxin levels were analysed by U-HPLC-HRMS/MS. Despite the different trends for micromycetes and mycotoxins after application of variously intense PEF conditions, significant reductions were generally observed. The greatest decrease was for F. sporotrichioides and F. poae, where up to six fold lower levels were achieved for malts produced from the PEF-treated barley when compared to the control. For F. culmorum and F. graminearum, up to a two-fold reduction in the PEF-generated malts was observed. These reductions mostly correlated with a decrease in relevant mycotoxins, specifically type A trichothecenes.
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- 2024
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13. Prevalence of TERT Promoter Mutations in Orbital Solitary Fibrous Tumors
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David Sinan Koca, Vladimir Kolpakov, Jana Ihlow, Maximilian von Laffert, Katharina Erb-Eigner, Hermann Herbst, Karen Kriese, Leonille Schweizer, and Eckart Bertelmann
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orbital solitary fibrous tumor ,TERT promoter mutation ,NAB2-STAT6 ,diffusion-weighted imaging (DWI) ,signal intensity void ,chemical shift artifact ,Biology (General) ,QH301-705.5 - Abstract
The orbital manifestation of a solitary fibrous tumor (SFT) is exceptionally rare and poses specific challenges in diagnosis and treatment. Its rather exceptional behavior among all SFTs comprises a high tendency towards local recurrence, but it rarely culminates in metastatic disease. This raises the question of prognostic factors in orbital SFTs (oSFTs). Telomerase reverse transcriptase (TERT)-promoter mutations have previously been linked to an unfavorable prognosis in SFTs of other locations. We analyzed the prevalence of TERT promoter mutations of SFTs in the orbital compartment. We performed a retrospective, descriptive clinico-histopathological analysis of nine cases of oSFTs between the years of 2017 and 2021. A TERT promoter mutation was present in one case, which was classified with intermediate metastatic risk. Local recurrence or progress occurred in six cases after primary resection; no distant metastases were reported. Multimodal imaging repeatedly showed particular morphologic patterns, including tubular vascular structures and ADC reduction. The prevalence of the TERT promoter mutation in oSFT was 11%, which is similar to the prevalence of extra-meningeal SFTs of the head and neck and lower than that in other extra-meningeal compartments. In the present study, the TERT promoter mutation in oSFT manifested in a case with an unfavorable prognosis, comprising aggressive local tumor growth, local recurrence, and eye loss.
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- 2024
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14. Proactive Maintenance and Data-Driven Optimization of Mineral Lubricating Oil in a Gas Engine Cogeneration System Extending Oil Change Intervals for Cost Savings and a Reduced Environmental Footprint
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Krzysztof Pytel, Roman Filipek, Adam Kalwar, Małgorzata Piaskowska-Silarska, Wiktor Hudy, Jana Depešová, and Franciszek Kurdziel
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engine oil ,oil condition monitoring ,cogeneration ,energy efficiency ,total base number (TBN) ,Technology - Abstract
This study investigates the operational properties of mineral lubricating oil in gas engines used in cogeneration systems, with a focus on factors contributing to the degradation of lubricating properties critical for energy efficiency and system management. The research was conducted on a 4.3 MW gas engine operating for about 90,000 machine hours, using natural gas as fuel. Data obtained from SCADA (Supervisory Control and Data Acquisition) systems and laboratory analysis were utilized to establish oil quality criteria, enabling the prediction of oil degradation and optimization of oil change intervals. Parameters including viscosity, contamination levels, Total Base Number (TBN), and Total Acid Number (TAN), were identified as significant indicators of oil performance and engine reliability. The findings revealed that oil change intervals could be extended by an average of 37% compared to standard schedules, thereby minimizing unnecessary maintenance downtimes, enhancing system availability, and increasing electrical and thermal energy output. Optimized oil utilization reduced material costs for oil and filter replacements, lowering expenditures from 3021 to 1887 EUR per machine hour. Additionally, the predicted Global Warming Potential (GWP) for prematurely consumed oil amounted to 68 × 103 kg CO2 eq., while avoidable waste generation reached 18.2 m3 of mineral oil. Regular oil analysis conducted every 1000 operating hours proved critical for early detection of oil degradation, supporting proactive maintenance strategies and ensuring optimal engine performance and longevity.
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- 2025
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15. Demonstrating Agroecological Practices in Potato Production with Conservation Tillage and Pseudomonas spp., Azotobacter spp., Bacillus spp. Bacterial Inoculants—Evidence from Hungary
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Jana Marjanović, Abdulrahman Maina Zubairu, Sandor Varga, Shokhista Turdalieva, Fernanda Ramos-Diaz, and Apolka Ujj
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agroecology ,biofertilizer ,bioinoculant ,no-tillage ,plant-growth-promoting bacteria ,potato ,Agriculture - Abstract
This study explores agroecological practices designed to improve soil quality and crop yield in small-scale agriculture, focusing on soil inoculation with beneficial bacteria over conventional fertilizers. Conducted at the SZIA Agroecological Garden MATE in Gödöllő, Hungary, the research utilizes 12 plots to evaluate different conservation tillage methods, including minimum and no-tillage, with and without microbial inoculation. Commenced in 2022, this study centers on potato cultivation (Solanum tuberosum L.) and includes comprehensive chemical and physical analyses of soil and harvested potatoes, alongside continuous monitoring of growth. Statistical analysis using One-way Anova in R revealed p-values predominantly above 0.05, indicating no significant differences across most parameters, though variations in soil plasticity and pH (KCl) were noted. Results suggest that substantial treatmeent differences may require a longer observation period. Notably, plots with microbial inoculation exhibited higher harvest weights and tuber sizes compared to control plots. Additionally, trends and interactions were found between weed abundance, total harvest, and plant height. The findings indicate that the benefits of integrated agroecological practices, including conservation tillage, may take time to materialize, emphasizing the necessity for extended observation. This research lays the groundwork for future studies, underscoring the importance of patience in achieving improvements in soil health and crop quality through sustainable agricultural methods.
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- 2024
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16. Increased Antibiotic Susceptibility of Gram-Positive Bacteria in Cerebrospinal Fluid Compared to Broth
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Jennifer S. Wirth, Marija Djukic, Katrin Biesner, Utz Reichard, Roland Nau, and Jana Seele
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Enterococcus faecalis ,Staphylococcus aureus ,Staphylococcus epidermidis ,Streptococcus pneumoniae ,minimal inhibitory concentration ,minimal bactericidal concentration ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Background: In hospital- and community-acquired central nervous system infections, resistant Gram-positive bacteria are an increasing therapeutic challenge. The present approach does not attempt to identify rapidly bactericidal therapies for susceptible pathogens but aims to improve methods to find antibiotic regimens for multi-resistant pathogens that are effective in vivo in spite of reduced in vitro susceptibility in culture media. Methods: Antibiotic susceptibility was tested in cerebrospinal fluid (CSF) and Mueller–Hinton broth (Enterococcus faecalis, methicillin-resistant Staphylococcus aureus, Staphylococcus epidermidis) or brain–heart infusion (Streptococcus pneumoniae). Results: Minimal inhibitory concentrations (MICs) and minimal bactericidal concentrations (MBCs) were either lower in CSF than in broth or equal in CSF and broth. The difference between MICs in CSF and broth was prominent with gentamicin, levofloxacin, linezolid (staphylococci), and vancomycin (staphylococci and pneumococcus), whereas it was absent with ampicillin (E. faecalis), penicillin G (S. pneumoniae), linezolid (enterococcus and pneumococcus), and vancomycin (enterococcus). In no case was the MIC or MBC higher in CSF than in broth. Conclusions: Several antibiotics possess an antibacterial effect in CSF at lower concentrations than the MICs determined in broth, i.e., MICs in broth underestimate in situ susceptibility in CSF.
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- 2024
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17. Assessment of Agrimonia eupatoria L. and Lipophosphonoxin (DR-6180) Combination for Wound Repair: Bridging the Gap Between Phytomedicine and Organic Chemistry
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Miriam Kaňuchová, Veronika Brindza Lachová, Kateřina Bogdanová, Jana Sabová, Petra Bonová, Tomáš Vasilenko, Ivan Kováč, Martin Novotný, Petra Mitrengová, Nitjawan Sahatsapan, Matúš Čoma, Emil Švajdlenka, Milan Kolář, Peter Bohuš, Pavel Mučaji, Robert Zajíček, Dominik Rejman, and Peter Gál
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skin tissue ,extracellular matrix ,repair ,regeneration ,phytotherapy ,Microbiology ,QR1-502 - Abstract
Agrimonia eupatoria L. (AE) has a rich tradition of use in wound healing improvement across various cultures worldwide. In previous studies, we revealed that Agrimonia eupatoria L. water extract (AE) possesses a rich polyphenolic composition, displaying remarkable antioxidant properties. Our investigations also demonstrated that lipophosphonoxin (LPPO) exhibited antibacterial efficacy in vitro while preserving the proliferation and differentiation of fibroblasts and keratinocytes. Building upon our prior findings, in this study, we intended to examine whether a combination of AE and LPPO could enhance skin wound healing while retaining antibacterial attributes. The antibacterial activity of AE/LPPO against Staphylococcus aureus was evaluated, alongside its effects on fibroblast-to-myofibroblast transition, the formation of extracellular matrix (ECM), and endothelial cells and keratinocyte proliferation/phenotype. We also investigated AE/LPPO’s impact on TGF-β1 and VEGF-A signaling in keratinocytes/fibroblasts and endothelial cells, respectively. Additionally, wound healing progression in rats was examined through macroscopic observation and histological analysis. Our results indicate that AE/LPPO promotes myofibroblast-like phenotypic changes and augments ECM deposition. Clinically relevant, the AE/LPPO did not disrupt TGF-β1 and VEGF-A signaling and accelerated wound closure in rats. Notably, while AE and LPPO individually exhibited antibacterial activity, their combination did not lead to synergism, rather decreasing antibacterial activity, warranting further examination. These findings underscore substantial wound healing improvement facilitated by AE/LPPO, requiring further exploration in animal models closer to human physiology.
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- 2024
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18. The Relationship of Creativity and Motor Creativity with Physical Activity and Motor Fitness in a Gender Perspective Among 8–9-Year-Old Children
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Maryna Khorkova, Łukasz Bojkowski, Agata Korcz, Marlena Łopatka, Dagny Adamczak, Jana Krzysztoszek, and Michał Bronikowski
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early education children ,motor creativity ,fitness ,sex differences ,physical education ,Pediatrics ,RJ1-570 - Abstract
Background: In this study, we aimed to determine the presence of any potential gender differences and relationships in terms of creativity, physical activity (PA), motor fitness, and motor creativity in children aged 8–9 years. Methods: The study included 195 primary school children (92 girls and 103 boys) aged 8–9 years old from grade 2. To determine creativity, the Test for Creative Thinking-Drawing Production was used, while motor creativity was assessed using Torrance’s ‘Thinking Creatively in Action and Movement’ test. Motor fitness was assessed with the selected items from the Eurofit battery and Piórkowski tests. The level of moderate-to-vigorous PA was determined with the Physical Activity Screening Measure. The Mann–Whitney U test was employed for in-between group comparison and Spearman’s correlation to determine relationships between the variables. Results: The results of the research showed the presence of differences in motor fitness between boys and girls, but no differences in PA, creativity, as well as motor creativity between genders. Moreover, it was found there was no association between PA and motor fitness and creativity or motor creativity in either boys or girls at this age. Conclusions: Thus, it can be assumed that to develop creativity through PA in children aged 8–9 years, it might be necessary to create an appropriate environment and strategy that will strengthen, inspire, and promote children’s creativity through movement. Having established that there is no difference in creativity between genders at this age, it was pointed out that it is necessary to look for teaching methods that would effectively awaken this ability in a co-educational setting.
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- 2024
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19. Simulation of an Orthodontic System Using the Lingual Technique Based on the Finite Element Method
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Abbas Hazem, Felicia Ileana Mărășescu, Mihaela Jana Țuculină, Dragoș Laurențiu Popa, Ionuț Daniel Geonea, Alexandru Iliescu, Petre Mărășescu, Ioan Ovidiu Gheorghe, Alma Roxana Pitru, Eugen Nicolae Tieranu, and Ionela Teodora Dascălu
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FEM ,archwires ,brackets ,lingual technique ,orthodontic system ,internal structures of the teeth ,Medicine (General) ,R5-920 - Abstract
Backgrounds/Objectives: The finite element method (FEM) is an advanced numerical technique that can be applied in orthodontics to study tooth movements, stresses, and deformations that occur during orthodontic treatment. It is also useful for simulating and visualizing the biomechanical behavior of teeth, tissues, and orthodontic appliances in various clinical scenarios. The objective of this research was to analyze the mechanical behavior of teeth, tissues, and orthodontic appliances in various clinical scenarios. Materials and Methods: For this study, we utilized a model derived from a set of CBCT scans of a 26-year-old female patient who underwent fixed orthodontic treatment using the lingual technique. Through a series of programs based on reverse engineering, we constructed a three-dimensional reconstruction of the teeth and their internal structures. Using the finite element method (FEM), we obtained six simulations of an orthodontic system utilizing the fixed lingual technique, in which we employed brackets made of chrome–nickel or gold, and archwires made of nitinol, gold, or stainless steel. Results: The study reveals that although the deformation of the archwires during orthodontic treatment is the same, the forces generated by the three types of archwires on brackets differ. The variation in forces applied to the brackets in the fixed lingual orthodontic technique is essential for customizing orthodontic treatment, as these forces must be precisely controlled to ensure effective tooth movement and prevent overloading of the dental structures. Conclusions: The FEM analysis allows for the identification of ideal combinations between the materials used for orthodontic archwires and the materials used for brackets. This ensures that the optimal intensity of forces applied during the fixed lingual orthodontic technique results in desired tooth movements without causing damage to the enamel, dentin, or pulp of the teeth.
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- 2024
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20. Mixed Methods in Educational Large-Scale Studies: Integrating Qualitative Perspectives into Secondary Data Analysis
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Jana Costa
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mixed methods ,secondary data ,large-scale assessment ,integration ,Education - Abstract
This article highlights the integration of qualitative perspectives into the traditionally quantitative domain of large-scale studies and explores how mixed methods can overcome the limitations of predefined datasets. Different purposes for integrating qualitative perspectives before, during, and after LSAs are presented. Two examples are used to illustrate the potential and challenges of re-analyzing existing data from a qualitative perspective. Therefore, this article argues that the integration of qualitative perspectives can provide new empirical insights, allowing researchers to explore new patterns, address research gaps, and reframe theoretical foundations. In this way, mixed methods can enhance the scope of LSA data analysis, making it more adaptable to complex educational research questions and enriching the overall research process.
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- 2024
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21. Towards Reliable Methodology: Microbiome Analysis of Fresh Frozen vs. Formalin-Fixed Paraffin-Embedded Bladder Tissue Samples: A Feasibility Study
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Dominik Enderlin, Uwe Bieri, Jana Gadient, Yasser Morsy, Michael Scharl, Jan Hendrik Rüschoff, Lukas John Hefermehl, Anna Nikitin, Janine Langenauer, Daniel Stephan Engeler, Beat Förster, Fabian Obrecht, Jonathan Surber, Thomas Paul Scherer, Daniel Eberli, and Cédric Poyet
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fresh frozen ,formalin-fixed paraffin-embedded ,microbiome ,bladder cancer ,alpha diversity ,Biology (General) ,QH301-705.5 - Abstract
Studies have shown that the human microbiome influences the response to systemic immunotherapy. However, only scarce data exist on the impact of the urinary microbiome on the response rates of bladder cancer (BC) to local Bacillus Calmette-Guérin instillation therapy. We launched the prospective SILENT-EMPIRE study in 2022 to address this question. We report the results of the pilot study of SILENT-EMPIRE, which aimed to compare the microbiome between fresh frozen (FF) and formalin-fixed paraffin-embedded (FFPE) samples in the cancerous tissue and adjacent healthy tissue of BC patients. Our results show that alpha diversity is increased in FF samples compared to FFPE (coverage index p = 0.041, core abundance index p = 0.008). No significant differences concerning alpha diversity could be detected between cancerous and non-cancerous tissue in the same BC patients. This study demonstrates that microbiome analysis from both FF and FFPE samples is feasible. Implementing this finding could aid in the translation of research findings into clinical practice.
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- 2024
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22. The Daunomycin: Biosynthesis, Actions, and the Search for New Solutions to Enhance Production
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Baveesh Pudhuvai, Karel Beneš, Vladislav Čurn, Andrea Bohata, Jana Lencova, Radka Vrzalova, Jan Barta, and Vladimir Matha
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daunomycin ,anthracyclines ,Streptomyces ,efflux ,autotoxicity ,enhancement ,Biology (General) ,QH301-705.5 - Abstract
Daunorubicin (DNR) is an anthracycline antibiotic originating from soil-dwelling actinobacteria extensively used to treat malignant tumors. Over the decades, extensive attempts were made to enhance the production of anthracyclines by introducing genetic modifications and mutations in combination with media optimization, but the target production levels remain comparatively low. Developing an appropriate culture medium to maximize the yield of DNR and preventing autotoxicity for the producing organism remains a challenge. Our prospective review sheds light on a method involving perturbation that enhances the precursors to regulate the type II PKS pathway, enhancing cells’ capacity to increase secondary metabolite production. The suggested method also entails the preparation of culture media for the cultivation of Streptomyces sp. and enhanced yield of DNR, as well as making it inactive with iron or its reduced forms following efflux from the producer. The iron or iron–DNR complex is encapsulated by oleic acid or lipid micelle layers in the culture media, finally resulting in the generated inactive DNR and the DNR–iron–oil complex. This idea has the potential to protect the producer organism from autotoxicity and prevent the inhibition of metabolite production. The approach of substituting sugar with oil in culture media has a dual role wherein it promotes Streptomyces growth by utilizing lipids as an energy source and encapsulating the generated DNR–iron complex in the medium. In this review, we discussed aspects like anthracycline producers, biosynthesis pathways, and gene regulation; side effects of DNR; mechanisms for autotoxicity evasion; and culture media components for the enhancement of DNR production in Streptomyces sp. We anticipate that our work will help researchers working with secondary metabolites production and decipher a methodology that would enhance DNR yield and facilitate the extraction of the resulting DNR by lowering costs in large-scale fermentation.
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- 2024
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23. Towards Novel Antiplasmodial Agents—Design, Synthesis and Antimalarial Activity of Second-Generation β-Carboline/Chloroquine Hybrids
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Ana Penava, Marina Marinović, Lais Pessanha de Carvalho, Jana Held, Ivo Piantanida, Dijana Pavlović Saftić, Zrinka Rajić, and Ivana Perković
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β-carboline ,chloroquine ,hybrid ,synthesis ,malaria ,fluorimetric probes ,Organic chemistry ,QD241-441 - Abstract
As the resistance of Plasmodium to the existing antimalarials increases, there is a crucial need to expand the antimalarial drug pipeline. We recently identified potent antimalarial compounds, namely harmiquins, hybrids derived from the β-carboline alkaloid harmine and 4-amino-7-chloroquinoline, a key structural motif of chloroquine (CQ). To further explore the structure−activity relationship, we synthesised 13 novel hybrid compounds at the position N-9 of the β-carboline ring and evaluated their efficacy in vitro against Plasmodium falciparum 3D7 and Dd2 strains (CQ sensitive and multi-drug resistant, respectively). All compounds exhibit persistent antimalarial activity against both strains of P. falciparum. The most interesting derivatives had low nanomolar activity against both strains (IC50 (33) = 4.7 ± 1.3 nM against Pf3D7 and 6.5 ± 2.5 nM against PfDd2; IC50 (37) = 4.6 ± 0.6 nM against 3D7 and 10.5 ± 0.4 nM against Dd2). Resistance indices (RIs) ranged from 0.9 to 5.3 compared to CQ (RI = 14.4), highlighting their superior consistency in activity against both strains. The cytotoxicity screening performed on HepG2 revealed over 3 orders of magnitude higher IC50 for most of the compounds, with SIs from 711.0 to 8081.8. Spectroscopic studies explored the affinities of newly synthesised compounds for DNA, RNA, and HSA. Both tested hybrids, 34 and 39, were intrinsically fluorescent in an aqueous medium, characterised by remarkable Stokes shifts of emission maxima (Δλ = +103 and +93 nm for 34 and 39, respectively). Fluorimetric experiments revealed that compound 34, with its shorter and more flexible linker, exhibited at least an order of magnitude higher affinity toward ds-DNAs versus ds-RNA and two orders of magnitude higher affinity toward GC-DNAs compared to 39. The behaviour of the investigated compounds upon binding to HSA is very similar, showing a strong hypsochromic shift of the emission maximum (almost Δλ = −70 nm) and demonstrating their effectiveness as fluorimetric probes for distinguishing between DNA/RNA and proteins.
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- 2024
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24. Sensory Quality, Volatile Compounds, and Physical Properties of Sheep’s Milk Cheese with Herbs (Allium ursinum L.)
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Agnieszka Pluta-Kubica, Dorota Najgebauer-Lejko, Jacek Domagała, Jana Lakatošová, Marek Šnirc, and Jozef Golian
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soft cheese ,wild garlic ,flavor ,volatiles ,color ,texture ,Organic chemistry ,QD241-441 - Abstract
The aim of this study was to investigate the effect of the addition of wild garlic leaves on the sensory quality, volatiles, color, and texture of sheep milk soft rennet-curd cheese. The sensory evaluation of color, appearance, texture, odor, and taste was performed using a 5-point scale. The intensity of selected taste and odor discriminants was also assessed. Volatiles were analyzed by the GC-MS method. Color and textural characteristics were determined instrumentally. The wild garlic addition had no effect on the sensory characteristics of the cheese (p > 0.05). However, cheese with herbs exhibited a less intensive sour odor (p ≤ 0.05), sheep’s milk odor, and taste (p ≤ 0.01). (E)-7-methyl-4-decene, dichloroacetic acid undecyl ester, and 3,5-dimethyl-octane, described as creamy, acetic, and acid pungent in smell, were not detected in the cheese with wild garlic while they were present in the natural one. Moreover, herbal cheese was more piquant (p ≤ 0.01). PCA showed that the differences in volatiles resulted both from the use of wild garlic and the time of storage. Herbal addition affected almost all color characteristics, except for the hue angle (h), but caused an increase only in hardness and chewiness. In conclusion, wild garlic leaves can be recommended as an additive in the production of soft sheep’s milk rennet-curd cheese.
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- 2024
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25. Vaccination Schedule and Age Influence Impaired Responsiveness to Hepatitis B Vaccination: A Randomized Trial in Central Asia
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Janyn Heisig, Zuridin Sh. Nurmatov, Peggy Riese, Stephanie Trittel, Gulsunai J. Sattarova, Saikal N. Temirbekova, Gulnara Zh. Zhumagulova, Zhanylai N. Nuridinova, Aisuluu A. Derkenbaeva, Bubuzhan K. Arykbaeva, Bakyt I. Dzhangaziev, Jana Prokein, Norman Klopp, Thomas Illig, Carlos A. Guzmán, Omor T. Kasymov, Manas K. Akmatov, and Frank Pessler
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aging ,Central Asia ,compliance ,hepatitis B ,immune response ,Kyrgyzstan ,Medicine - Abstract
Vaccination against hepatitis B virus (HBV) is the most cost-efficient measure to prevent infection. Still, vaccination coverage among adults in Central Asia, including Kyrgyzstan, remains suboptimal, and data about immune responses to HBV vaccination are lacking. HBV vaccination is given as three injections, whereby the second and third doses are given 1 and 6 months after the first (0-1-6 scheme). However, compliance with the third dose is low in Kyrgyzstan, presumably due to the long time interval between the second and third doses, suggesting that a shortened vaccination schedule could result in better adherence and increased seroconversion. Thus, we conducted a randomized trial of individuals aged 17–66 years comparing the 0-1-6 scheme against a shorter 0-1-3 scheme. Primary outcome measures were post-vaccination titers and the percentage of participants with protective post-vaccination titers (≥10 mIU/mL). Compliance with the completeness of blood draws and administered third vaccine dose was better with the 0-1-3 scheme than with the 0-1-6 scheme. In both study arms combined, younger age (p = 0.002) and a higher seroprotection rate (85% versus 64%, p = 0.01) than the 0-1-3 scheme, whereby post-vaccination titers correlated negatively with age in the 0-1-3 scheme. Thus, the 0-1-6 scheme should continue to be the preferred HBV vaccination schedule, but interventions to improve compliance with the third vaccine dose are needed.
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- 2024
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26. Proposes Geometric Accuracy and Surface Roughness Estimation of Anatomical Models of the Pelvic Area Manufactured Using a Material Extrusion Additive Technique
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Paweł Turek, Sławomir Snela, Grzegorz Budzik, Anna Bazan, Jarosław Jabłoński, Łukasz Przeszłowski, Robert Wojnarowski, Tomasz Dziubek, and Jana Petru
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computer-aided inspection ,reverse engineering ,additive manufacturing ,pelvic model ,material extrusion method ,accuracy ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
One of the main benefits of using 3D printing in orthopedics is the ability to create custom solutions tailored to a patient’s specific anatomical and functional needs. Conducting a reliable evaluation of the accuracy of the manufacture of anatomical structure models is essential. However, particular standards or procedures still need to be implemented to control the surface quality of anatomical models manufactured using additive manufacturing techniques. Models of pelvic parts made of polylactic acid (PLA) material were manufactured using the Material Extrusion (MEX) additive technique. Subsequently, guidelines were developed to reliably verify the geometric and surface roughness of the 3D printed models using Computer-Aided Inspection (CAI) systems. For this purpose, a measuring arm system (MCA-II) with a mounted laser head and Atos II Triple Scan was used. To inspect surface roughness parameters, procedures were developed for an Alicona InfiniteFocusG4 optical microscope. The results of the geometrical verification of the models are within the tolerance limits of ±0.22 mm to ±0.6 mm. In the case of surface roughness measurement, the highest values for the arithmetical mean height Sa were obtained on the side of the support material, while the smallest values were found along the applied layers. After the metrological control process, the models were used in the planning process for hip surgery.
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- 2024
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27. Electrical Properties of Cu-Based Coordination Complexes: Insights from In Situ Impedance Spectroscopy
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Jana Pisk, Marko Dunatov, Martina Stojić, Nenad Judaš, Ivica Đilović, Marta Razum, and Luka Pavić
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copper complexes ,(thio)carbohydrazones ,aroylhydrazones ,impedance spectroscopy ,electrical properties ,Organic chemistry ,QD241-441 - Abstract
This study examines the influence of ligand design on the structural, optical, and electrical properties of copper-based coordination complexes. Ligands H2L1 and H2L2 were synthesized via the reaction of 5-nitrosalicylaldehyde with 2-hydroxy- or 4-hydroxybenzhydrazide. H4L3 was obtained from the reaction of carbohydrazide and salicylaldehyde, while H4L4 was prepared by condensing 4-methoxysalicylaldehyde with thiocarbohydrazide. The research focuses on two key design elements: (1) the effect of hydroxyl group positioning on the aroyl ring in hydrazide ligands (H2L1 vs. H2L2) and (2) the impact of carbonyl versus thiocarbonyl groups and aldehyde substituents in hydrazone ligands (H4L3 vs. H4L4). The resulting complexes, [Cu2(L1)2], [Cu2(L2)2(MeOH)3], [Cu2(L3)(H2O)2], and [Cu2(L4)(H2O)2], were synthesized and characterized using attenuated total reflectance infrared (IR-ATR) spectroscopy, thermogravimetric analysis (TG), and UV-Vis diffuse reflectance spectroscopy. Their electrical properties were investigated using solid-state impedance spectroscopy (IS). The crystal and molecular structure of the complex [Cu2(L2)2(MeOH)3]∙MeOH was determined by single-crystal X-ray diffraction (SCXRD). This study underscores the pivotal role of ligand modifications in modulating the functional properties of coordination complexes, offering valuable insights for the advancement of materials chemistry.
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- 2024
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28. Enhanced Catalytic Activity of CuO@CuS Core–Shell Structure for Highly Efficient HER Application
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Abu Talha Aqueel Ahmed, Sangeun Cho, Hyunsik Im, and Atanu Jana
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hydrothermal growth ,CuS ,core–shell ,HER ,nitrogen doping ,TOF ,Chemistry ,QD1-999 - Abstract
Using electrocatalytic water reduction to produce hydrogen fuel offers significant potential for clean energy, yet its large-scale adoption depends on developing cost-effective, non-precious, and efficient catalysts to replace expensive Pt-based state-of-the-art HER catalysts. The catalytic HER performance of an active catalyst largely depends on the available catalytic active sites, conductivity, and intrinsic electrochemical kinetics, all of which can be altered by incorporating a heteroatom into the active catalyst structure. Herein, we synthesized a unique nitrogen-doped CuO@CuS (NCOS) core–shell-structured catalyst through a facile hydrothermal process followed by an efficacious nitrogenation process, and its electrochemical performance for the HER was systematically analyzed. The NCOS core–shell-structured catalyst exhibits a reduced overpotential (55 mV) and Tafel slope (107 mV dec−1) compared to the pure CuS (CS; 179 mV and 201 mV dec−1) catalyst at a current density of 10 mA cm−2. Moreover, the NCOS core–shell-structured catalyst demonstrates excellent endurance for up to 50 h of chronopotentiometric testing at a driving current density rate of 10 and 100 mA cm−2. This excellent catalytic HER activity is a result of an increased electron transfer rate and a greater number of accessible active sites, attributed to a change in structural properties and the high electronic conductivity aroused from nitrogen incorporation, as evidenced from the TOF and EIS curve analyses.
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- 2024
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29. Steps to Facilitate the Use of Clinical Gait Analysis in Stroke Patients: The Validation of a Single 2D RGB Smartphone Video-Based System for Gait Analysis
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Philipp Barzyk, Alina-Sophie Boden, Justin Howaldt, Jana Stürner, Philip Zimmermann, Daniel Seebacher, Joachim Liepert, Manuel Stein, Markus Gruber, and Michael Schwenk
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markerless motion capture ,gait analysis ,stroke ,joint kinematics ,RGB camera ,human movement analysis ,Chemical technology ,TP1-1185 - Abstract
Clinical gait analysis plays a central role in the rehabilitation of stroke patients. However, practical and technical challenges limit their use in clinical settings. This study aimed to validate SMARTGAIT, a deep learning-based gait analysis system that addresses these limitations. Eight stroke patients took part in the study at the Human Performance Research Centre of the University of Konstanz. Gait measurements were taken using both the marker-based Vicon motion capture system and the single-smartphone-based SMARTGAIT system. We evaluated the agreement for knee, hip, and ankle joint angle kinematics in the frontal and sagittal plane and spatiotemporal gait parameters between the two systems. The results mostly demonstrated high levels of agreement between the two systems, with Pearson correlations of ≥0.79 for all lower body angle kinematics in the sagittal plane and correlations of ≥0.71 in the frontal plane. RMSE values were ≤4.6°. The intraclass correlation coefficients for all derived gait parameters showed good to excellent levels of agreement. SMARTGAIT is a promising tool for gait analysis in stroke, particularly for quantifying gait characteristics in the sagittal plane, which is very relevant for clinical gait analysis. However, further analyses are required to validate the use of SMARTGAIT in larger samples and its transferability to different types of pathological gait. In conclusion, a single smartphone recording (monocular 2D RGB camera) could make gait analysis more accessible in clinical settings, potentially simplifying the process and making it more feasible for therapists and doctors to use in their day-to-day practice.
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- 2024
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30. Detection of Disease Features on Retinal OCT Scans Using RETFound
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Katherine Du, Atharv Ramesh Nair, Stavan Shah, Adarsh Gadari, Sharat Chandra Vupparaboina, Sandeep Chandra Bollepalli, Shan Sutharahan, José-Alain Sahel, Soumya Jana, Jay Chhablani, and Kiran Kumar Vupparaboina
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retinal imaging ,optical coherence tomography ,machine learning ,age-related macular degeneration ,foundational model ,automated report generation ,Technology ,Biology (General) ,QH301-705.5 - Abstract
Eye diseases such as age-related macular degeneration (AMD) are major causes of irreversible vision loss. Early and accurate detection of these diseases is essential for effective management. Optical coherence tomography (OCT) imaging provides clinicians with in vivo, cross-sectional views of the retina, enabling the identification of key pathological features. However, manual interpretation of OCT scans is labor-intensive and prone to variability, often leading to diagnostic inconsistencies. To address this, we leveraged the RETFound model, a foundation model pretrained on 1.6 million unlabeled retinal OCT images, to automate the classification of key disease signatures on OCT. We finetuned RETFound and compared its performance with the widely used ResNet-50 model, using single-task and multitask modes. The dataset included 1770 labeled B-scans with various disease features, including subretinal fluid (SRF), intraretinal fluid (IRF), drusen, and pigment epithelial detachment (PED). The performance was evaluated using accuracy and AUC-ROC values, which ranged across models from 0.75 to 0.77 and 0.75 to 0.80, respectively. RETFound models display comparable specificity and sensitivity to ResNet-50 models overall, making it also a promising tool for retinal disease diagnosis. These findings suggest that RETFound may offer improved diagnostic accuracy and interpretability for specific tasks, potentially aiding clinicians in more efficient and reliable OCT image analysis.
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- 2024
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31. Dental Practitioners’ Knowledge and Attitudes Toward the Etiology, Diagnosis, and Treatment of Peri-Implantitis
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Osama Zakaria, Afsheen Tabassum, Dina Attia, Turki Alshehri, Danya A. Alanazi, Jana Alshehri, Sami Alshehri, Aditi Chopra, and Marwa Madi
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peri-implantitis ,dental implant ,education ,knowledge ,awareness ,etiology ,Dentistry ,RK1-715 - Abstract
Objectives: The objective of this study was to assess the level of knowledge and attitude about the etiology, diagnosis, and management of peri-implantitis among dental practitioners. Methods: An online cross-sectional study on 303 dentists in Saudi Arabia was conducted. A closed-ended survey consisting of 28 questions was designed. Three sections were created, i.e., (1) participants’ characteristics; (2) knowledge of peri-implantitis etiology, risk factors, diagnosis, and complications; and (3) the use of antibiotics to manage peri-implantitis and methods used for diagnosis and treatment. The data were analyzed using mean and percentages. Results: A total of 303 dentists participated in this study with a 78.8% response rate, comprising 80% general dentists and 20% specialists. The majority of dentists demonstrated knowledge about peri-implantitis, with 85.5% identifying bacterial plaque as an etiologic factor and 83.8% recognizing it as an inflammatory reaction. Regarding risk factors, 88.1% identified smoking and 86.1% recognized periodontitis as contributors to peri-implant disease development. In terms of clinical decision making, 63% of participants considered implant mobility as a definitive indication for implant removal, and more than half reported using crater-like bone defects surrounding implants as a diagnostic criterion for peri-implantitis. For antimicrobial therapy, amoxicillin alone (30%) was the most commonly prescribed antibiotic, followed by the combination of amoxicillin with metronidazole (29%). Despite these treatment approaches, it is important to note that currently there are no established, predictable protocols for treating any phase of peri-implant disease. Conclusion: While participating dentists demonstrated a strong understanding of peri-implantitis etiology and risk factors, particularly regarding bacterial plaque and smoking as major contributors, there was considerable variation in antibiotic selection and usage patterns. These findings suggest the need for standardized guidelines and further research to establish evidence-based protocols for managing peri-implant diseases.
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- 2024
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32. Effect of Powder Recycling on the Surface and Selected Technological Properties of M300 Maraging Steel Produced via the SLM Method
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Abdesselam Mechali, Josef Hlinka, Michal Kresta, Marin Petrovic, Jakub Mesicek, Ibrahim Jahan, Jiri Hajnys, and Jana Petru
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3D printing ,SLM ,recycled powder ,porosity ,corrosion ,wettability ,Production capacity. Manufacturing capacity ,T58.7-58.8 - Abstract
This study delves into selective laser melting (SLM). By using M300 steel in virgin and recycled powder form (after 20 cycles), with the aim of reducing the cost of printing for the practical application of M300 maraging steel, a comprehensive comparison between the two types of powder was evaluated. The powder’s morphology was analyzed using scanning electron microscopy (SEM) and backscattered electrons (BSE). The particles were seen to have a spherical shape, with a notable number of satellites attached to their surfaces. The particle size distribution (PSD) was examined and ranged from 10 to 90 µm for both powders. In addition, the porosity exhibited an average value of 0.07% for the virgin powder and 0.10% for the recycled powder. The microstructure was examined. Additionally, the surface wettability was tested, and it was seen to display wetting behavior for both types of powder, while blackened surfaces showed a higher wetting angle than untreated surfaces (hydrophobic). The 2D roughness measurements showed that the recycled powder had no significant difference from the virgin powder (Ra = 5.33 µm, Rz = 24.17 µm) before blackening and (Ra = 5.48 µm, Rz = 24.07 µm) after blackening. Corrosion tests proved that the recycled powder did not affect the corrosion properties of the material, while blackening caused partial surface corrosion in both types of samples, regardless of the used powder.
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- 2024
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33. Implementation of Sensitive Method for Determination of Benzophenone and Camphor UV Filters in Human Urine
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Veronika Gomersall, Katerina Ciglova, and Jana Pulkrabova
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biomonitoring ,UHPLC-MS/MS ,urine analysis ,UV filters ,Chemical technology ,TP1-1185 - Abstract
The level of the human body’s burden of benzophenone and camphor ultraviolet (UV) filters can be estimated from their urinary levels. The present study describes the implementations and validation of the sensitive analytical method for the analysis of seven benzophenone and two camphor UV filters in urine. Sample preparation includes overnight enzymatic hydrolysis and ethyl acetate extraction followed by purification by dispersive solid-phase extraction using a sorbent Z-Sep. For the analysis, ultra-high performance liquid chromatography coupled with tandem mass spectrometry was used. Validation was performed using a Standard Reference Material® 3673 and an artificially contaminated urine sample. Target analyte recoveries ranged from 79–113% with repeatability expressed as a relative standard deviation of 2–15%. The limits of quantification were between 0.001 and 0.100 ng/mL in urine. This method was subsequently applied to examine the urine samples collected from Czech women. The analytes benzophenone-1 and 4-hydroxy-benzophenone were the most common analytes present in 100% of the samples, whereas benzophenone-3 was quantified in only 90% of the urine samples. The other four determined benzophenone derivatives were quantified in ≤33% of the samples. The derivatives of camphor were not detected in any samples. This method could be applied in biomonitoring studies.
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- 2024
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34. Development of Indirect Sandwich ELLA for Detection of Insects in Food
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Matej Pospiech, Martina Pečová, Marie Bartlová, Zdeňka Javůrková, Anežka Kopecká, Kateřina Šebelová, Ondřej Pospíšil, Martin Kulma, Jakub Folke, Bohuslava Tremlová, Lenka Kouřimská, and Jana Hajšlová
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N-acetylglucosamine ,chitin ,chitosan ,food adulteration ,edible insect ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Edible insects have been officially classified as food in the European Union since 2015. Currently, four insect species are approved for food use. However, no official method for detecting insects in food has been recognized to date. To establish a simple analytical method for insect detection in food, we developed an indirect sandwich (enzyme-linked lectin sorbent assay) ELLA specific for N-acetylglucosamine in chitin and chitosan polymers. The validation of the method demonstrated that the ELLA developed in this study is reliable for insect detection. The limit of detection (LOD) and quantification (LOQ) were 0.006 and 0.028 mg/mL, respectively. Intra-day precision ranged from 2.45% to 30.29%, and inter-day precision from 0.36% to 12.87%. Significant differences in the total amount of chitin and chitosan were observed among the insect products, processed insect products, and samples without any insect addition (p < 0.05).
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- 2024
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35. The Influence of Maceration on the Biodiversity of Yeasts in the Early Winemaking Stages of White Wine from the Slovak Tokay Wine Region
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Ivana Regecová, Jana Výrostková, Boris Semjon, Viera Lovayová, Pavlina Jevinová, Zuzana Megyesy Eftimová, Martin Bartkovský, Monika Pipová, and Slavomír Marcinčák
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diversity ,fermentation ,maceration ,Tokay ,wine ,yeast ,Chemical technology ,TP1-1185 - Abstract
This study investigates the effect of maceration and different winemaking techniques on the species diversity of yeasts in white wines from the Slovak Tokay wine region, known for its traditional white wine production. Lipovina grape variety samples were divided into three groups: control (C), macerated (M) and macerated with the addition of a yeast culture (MY). During the entire fermentation process, quantitative and qualitative microbiological analyses of the raw material and must samples were carried out, which resulted in the identification of 60 yeast isolates via the API 20 C AUX biochemical test and MALDI-TOF MS. Identification was further verified via Sanger sequencing of PCR amplicons, which confirmed the presence of less common wild yeasts in Tokay wine must samples, including Aureobasidium pullulans, Cryptococcus magnus, Torulaspora delbrueckii and Rhodotorula sp. The highest species diversity was observed in the macerated group. These findings indicate that the quality and distinctiveness of Slovak Tokay wines can be increased by careful management of the maceration process during winemaking procedures.
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- 2024
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36. Antibacterial and Antibiofilm Activity of Essential Oils Against Aeromonas spp. Isolated from Rainbow Trout
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Patrícia Hudecová, Jana Koščová, Vanda Hajdučková, Ján Király, and Peter Horňak
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essential oil ,Oncorhynchus mykiss ,Aeromonas salmonicida subsp. masoucida ,antimicrobial activity ,biofilm ,Veterinary medicine ,SF600-1100 ,Zoology ,QL1-991 - Abstract
Aeromonas spp. is a major pathogen in aquaculture with a great negative economic impact. Essential oils (EOs) are compounds of the secondary metabolism of plants known for their antibacterial and antibiofilm activities. In this study, in vitro antibacterial activity of eight EOs: tea tree (extracted from Melaleuca alternifolia), eucalyptus (extracted from Eucalyptus globulus LABILL.), knee timber (extracted from Pini mungo L.), peppermint (extracted from Mentha piperita L.), oregano (extracted from Origanum vulgare L.), rosemary (extracted from Rosmarinus officinalis L.), thyme (extracted from Thymus vulgaris L.) and pine EO (extracted from Pinus silvestris L.), obtained from Calendula a.s., was evaluated. Their antibacterial activity was demonstrated against Aeromonas spp. isolates. Oregano and thyme EOs showed the strongest activity against all tested isolates at low concentrations, followed by tea tree and peppermint EOs. The MIC value ranged from 0.06 µL/mL to 1.0 µL/mL. The tested EOs showed a significant antibiofilm activity against biofilm-forming isolates with MBIC50 ranging from 0.015 µL/mL to 0.25 µL/mL. All tested isolates were obtained from rainbow trout free of clinical signs of infection. Twelve isolates of Aeromonas salmonicida subsp. masoucida, four Aeromonas hydrophila, and four isolates of Aeromonas veronii were identified. The results of the in vitro study showed a significant effect of EOs against Aeromonas spp., which confirmed their potential for use in aquaculture as a prevention against bacterial diseases and a way of reducing the use of antibiotics.
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- 2024
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37. Growth Performance, Carcass Quality, and Lipid Metabolism in Krškopolje Pigs and Modern Hybrid Pigs: Comparison of Genotypes and Evaluation of Dietary Protein Reduction
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Martin Škrlep, Klavdija Poklukar, Milka Vrecl, Jana Brankovič, and Marjeta Čandek-Potokar
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Krškopolje pig ,breed comparison ,protein reduction ,performance ,carcass quality ,lipid metabolism ,Veterinary medicine ,SF600-1100 ,Zoology ,QL1-991 - Abstract
This study compared the performance, meat quality and adipose tissue characteristics of Krškopolje pigs and modern hybrid pigs under identical rearing conditions, besides examining the effects of dietary protein reduction in both genotypes. A total of 29 pigs (14 Krškopolje and 15 hybrids) were assigned to litter into two dietary groups (high and low protein). The low-protein diet for hybrid pigs corresponded to the high-protein diet for Krškopolje pigs. All diets were iso-energetic. Dietary protein reduction decreased growth rate and muscle development in modern hybrids but had no significant impact on performance, quality or metabolic traits in Krškopolje pigs. Genotype differences revealed that Krškopolje pigs had lower growth rates, less lean and more fat deposition, as reflected in thicker subcutaneous and higher intramuscular fat compared to modern hybrids. Krškopolje pigs also exhibited higher myoglobin concentration and fatty acid saturation. Lipogenic enzyme activity and histo-morphological traits behaved in a tissue-specific manner but still indicated a greater lipogenic potential in Krškopolje pigs. This study provides valuable insights into breed-specific responses to dietary changes and highlights the unique characteristics of Krškopolje pigs.
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- 2024
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38. Quantitative and Computational Spinal Imaging in Neurodegenerative Conditions and Acquired Spinal Disorders: Academic Advances and Clinical Prospects
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Mary Clare McKenna, Jana Kleinerova, Alan Power, Angela Garcia-Gallardo, Ee Ling Tan, and Peter Bede
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spinal cord ,MRI ,biomarker ,radiology ,neurodegenerative conditions ,ALS ,Biology (General) ,QH301-705.5 - Abstract
Introduction: Quantitative spinal cord imaging has facilitated the objective appraisal of spinal cord pathology in a range of neurological conditions both in the academic and clinical setting. Diverse methodological approaches have been implemented, encompassing a range of morphometric, diffusivity, susceptibility, magnetization transfer, and spectroscopy techniques. Advances have been fueled both by new MRI platforms and acquisition protocols as well as novel analysis pipelines. The quantitative evaluation of specific spinal tracts and grey matter indices has the potential to be used in diagnostic and monitoring applications. The comprehensive characterization of spinal disease burden in pre-symptomatic cohorts, in carriers of specific genetic mutations, and in conditions primarily associated with cerebral disease, has contributed important academic insights. Methods: A narrative review was conducted to examine the clinical and academic role of quantitative spinal cord imaging in a range of neurodegenerative and acquired spinal cord disorders, including hereditary spastic paraparesis, hereditary ataxias, motor neuron diseases, Huntington’s disease, and post-infectious or vascular disorders. Results: The clinical utility of specific methods, sample size considerations, academic role of spinal imaging, key radiological findings, and relevant clinical correlates are presented in each disease group. Conclusions: Quantitative spinal cord imaging studies have demonstrated the feasibility to reliably appraise structural, microstructural, diffusivity, and metabolic spinal cord alterations. Despite the notable academic advances, novel acquisition protocols and analysis pipelines are yet to be implemented in the clinical setting.
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- 2024
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39. Controlled Coffee Intake Enhances Erythrocyte Deformability, Na,K-ATPase Activity, and GSH/GSSG Ratio in Healthy Young Adults
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Dominika Radosinska, Tomas Jasenovec, Alzbeta Golianova, Ivan Szadvari, Rastislav Vazan, Ivona Kovacicova, Denisa Snurikova, Norbert Vrbjar, and Jana Radosinska
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erythrocytes ,coffee ,sodium–potassium pump ,deformability ,nitric oxide ,oxidative stress ,Biology (General) ,QH301-705.5 - Abstract
Background: Published studies suggest that regular coffee consumption may reduce the risk of various diseases. However, many of these studies relied on questionnaire-based data, limiting their ability to identify the specific biological mechanisms behind the observed effects. This study focuses on controlled coffee consumption among healthy young adults to clarify its effects on erythrocyte properties. The functional condition of erythrocytes is important as it affects both macro- and microcirculation. Additionally, since erythrocytes are not true cells, they are particularly sensitive to biochemical and biophysical changes when exposed to biologically active substances. Methods: After a washout period, 33 healthy young volunteers were asked to consume a standardized dose of a coffee beverage daily for 3 weeks. Basic hematological and body composition parameters were recorded before and after the intervention. Erythrocyte functional status was evaluated based on the following measurements: deformability, osmotic resistance, Na,K-ATPase activity, and nitric oxide production, along with monitoring oxidative stress markers. Results: After a coffee consumption period, both erythrocyte count and hematocrit value increased, while body composition remained unchanged. Erythrocyte deformability improved across a range of shear stress values typical of human circulation. This improvement was accompanied with enhanced Na,K-ATPase activity in erythrocyte membranes in the wide range of sodium ion concentrations, as well as increased nitric oxide production by erythrocytes. Additionally, a higher GSH/GSSG ratio, indicating a shift towards a more favorable antioxidant balance, was observed in erythrocytes following the coffee intake period. Conclusions: The results of this study suggest that controlled coffee intake in healthy young adults can positively influence various indices of erythrocyte functional status. Although the observed statistically significant changes were modest, the findings consistently indicate a positive modulation of erythrocyte properties—cell deformability, oxidative resilience, and active membrane transport of cations—following coffee consumption.
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- 2024
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40. Examining Erythrocytes as Potential Blood Biomarkers for Autism Spectrum Disorder: Their Relationship to Symptom Severity and Adaptive Behavior
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Tomas Jasenovec, Dominika Radosinska, Ivan Belica, Barbara Raskova, Angelika Puzserova, Norbert Vrbjar, and Jana Radosinska
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autism spectrum disorder ,ADOS-2 ,VABS-3 ,erythrocytes ,erythrocyte deformability ,nitric oxide ,Biology (General) ,QH301-705.5 - Abstract
Background: Multiple research teams have documented various abnormalities in erythrocyte properties in children with autism spectrum disorder (ASD) compared with neurotypical individuals. Reduced erythrocyte deformability, a crucial factor for microcirculation and oxygen delivery, may affect brain function. Other key factors like nitric oxide (NO) and Na,K-ATPase-regulated cation transport also play roles in both erythrocyte deformability and ASD, suggesting a possible relationship between erythrocyte parameters and autism severity. Thus, this study aims to describe these associations, exploring erythrocyte properties as potential biomarkers in ASD. Methods: A total of 179 ASD children were enrolled in this study. Diagnosis was confirmed by the Autism Diagnostic Observation Schedule—Second Edition (ADOS-2) and Autism Diagnostic Interview-Revised. The Vineland Adaptive Behavior Scales, Third Edition (VABS-3), was used to assess adaptive behavior. RBC deformability was measured using a filtration technique, while NO production by RBCs was assessed via DAF-2DA fluorescence. Na,K-ATPase kinetics and RBC osmotic resistance were evaluated spectrophotometrically. Results: Children with more severe ASD symptoms had more impaired deformability and osmotic resistance than children with mild symptoms. Higher RBC NO production was linked to better scores in some VABS-3 subdomains, and in the social affect domain of ADOS-2. Higher affinity of Na,K-ATPase for sodium negatively correlated with the occurrence of repetitive and restricted behavior—one of the core ASD symptoms. Conclusions: This study identified potential links between ASD severity and RBC properties. While erythrocyte quality can influence ASD symptomatology, the observed relationships—such as those involving RBC deformability, NO production, Na,K-ATPase kinetics, and osmotic resistance—were not strong or consistent enough to be considered reliable diagnostic or prognostic biomarkers.
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- 2024
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41. Polyphenolic Compounds Activate SERCA1a and Attenuate Methylglyoxal- and Palmitate-Induced Impairment in Pancreatic INS-1E Beta Cells
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Vladimir Heger, Barbora Benesova, Magdalena Majekova, Petronela Rezbarikova, Attila Hunyadi, Lubica Horakova, and Jana Viskupicova
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activators ,insulin release ,pancreatic beta cells ,polyphenols ,SERCA ,Cytology ,QH573-671 - Abstract
Sarco/endoplasmic reticulum Ca2+-ATPase (SERCA) is an important regulatory protein responsible for maintaining calcium homeostasis within cells. Impairment of SERCA associated with activity/expression decrease has been implicated in multiple chronic conditions, including cardiovascular diseases, diabetes, cancer, neurodegenerative diseases, and skeletal muscle pathologies. Natural polyphenols have been recognized to interact with several target proteins involving SERCA. To date, only a limited number of polyphenolic compounds or their derivatives have been described either to increase SERCA activity/expression directly or to affect Ca2+ signaling pathways. In this study, we tested polyphenols for their ability to activate SERCA1a in the absence or presence of methylglyoxal or palmitate and to impact insulin release in pancreatic beta cells. The protective effects of these compounds against methylglyoxal- or palmitate-induced injury were evaluated. Results indicate that 6-gingerol, resveratrol, and ellagic acid activate SERCA1a and protect against activity decrease induced by methylglyoxal and palmitate. Molecular docking analysis revealed the binding of these polyphenols to Glu439 in the SERCA1a P-domain, suggesting a critical role in the stimulation of enzyme activity. Ellagic acid was found to directly stimulate the activity of SERCA1a, marking the first instance of such an observation.
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- 2024
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42. Fuzzy Coalition Graphs: A Framework for Understanding Cooperative Dominance in Uncertain Networks
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Yongsheng Rao, Srinath Ponnusamy, Sundareswaran Raman, Aysha Khan, and Jana Shafi
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strong domination ,strong domination number ,fuzzy coalition number ,fuzzy coalition partition ,fuzzy coalition graph ,Mathematics ,QA1-939 - Abstract
In a fuzzy graph G, a fuzzy coalition is formed by two disjoint vertex sets V1 and V2, neither of which is a strongly dominating set, but the union V1∪V2 forms a strongly dominating set. A fuzzy coalition partition of G is defined as Π={V1,V2,⋯,Vk}, where each set Vi either forms a singleton strongly dominating set or is not a strongly dominating set but forms a fuzzy coalition with another non-strongly dominating set in Π. A fuzzy graph with such a fuzzy coalition partition Π is called a fuzzy coalition graph, denoted as FG(G,Π). The vertex set of the fuzzy coalition graph consists of {V1,V2,⋯,Vk}, corresponding one-to-one with the sets of Π, and the two vertices are adjacent in FG(G,Π) if and only if Vi and Vj are fuzzy coalition partners in Π. This study demonstrates how fuzzy coalition graphs can model and optimize cybersecurity collaborations across critical infrastructures in smart cities, ensuring comprehensive protection against cyber threats. This study concludes that fuzzy coalition graphs offer a robust framework for optimizing collaboration and decision-making in interconnected systems like smart cities.
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- 2024
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43. Salmonella Infantis Adhesion to Various Surfaces and In Vitro Antimicrobial Efficacy of Commercial Disinfectants
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Katja Kranjc, Jana Avberšek, Neva Šemrov, Olga Zorman-Rojs, and Darja Barlič-Maganja
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Salmonella Infantis ,disinfectants ,adhesion ,Medicine - Abstract
Salmonella Infantis poses a significant challenge in poultry production due to its persistence and resistance to disinfectants. This study investigated the survival of the S. Infantis strain on different surfaces and evaluated the efficacy of disinfectants in both preventing and treating biofilms. The survival of the tested S. Infantis strain was assessed on plastic and stainless steel surfaces after 24 and 48 h. The minimum inhibitory concentrations (MICs) of five disinfectants were determined, and their antiadhesion effectiveness was evaluated using crystal violet. The efficacy of biofilm treatment was evaluated by cell culturability. The results showed that the adhesion of S. Infantis was significantly higher on the plastic surface. The disinfectants were effective at reducing biofilm formation only within the first 24 h. Fresh solutions of disinfectants based on quaternary ammonium compounds exhibited the highest antimicrobial efficacy, while chlorocresol was the most effective for both the prevention and treatment of biofilms. The study results suggest that the presence of plastic surfaces may contribute to the dissemination of Salmonella. Additionally, the effectiveness of disinfectants varied based on storage conditions and contact time, while biofilms demonstrated reduced susceptibility compared to planktonic cells. However, given the laboratory scale of this study, further validation on a commercial scale is necessary to confirm these findings.
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- 2024
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44. Production of Oncolytic Measles Virus in Vero Cells: Impact of Culture Medium and Multiplicity of Infection
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Dustin Eckhardt, Jana Mueller, Jonas Friedrich, Jan-P. Klee, Irakli Sardlishvili, Lars E. Walter, Stefanie Fey, Peter Czermak, and Denise Salzig
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multiplicity of infection (MOI) ,media adaption ,chemically defined medium (CDM) ,serum-free medium (SFM) ,viral vaccines ,vectors ,Microbiology ,QR1-502 - Abstract
Oncolytic measles virus (MeV) is a promising anti-cancer treatment. However, the production of high titers of infectious MeV (typically 107–109 TCID50 per dose) is challenging because the virus is unstable under typical production conditions. The objective of this study was to investigate how the multiplicity of infection (MOI) and different media—a serum-containing medium (SCM), a serum-free medium (SFM) and two chemically defined media (CDM)—affect MeV production. We infected Vero cells at MOIs of 0.02, 0.2 or 2 TCID50 cell−1 and the lowest MOI resulted in the largest number of infected cells towards the end of the production period. However, this did not equate to higher maximum MeV titers, which were similar for all the MOIs. The medium had a moderate effect, generating maximum titers of 0.89–2.17 × 106, 1.08–1.25 × 106 and 4.58–9.90 × 105 TCID50 mL−1 for the SCM, SFM and CDM, respectively. Infection at a low MOI often required longer process times to reach maximum yields. On the other hand, a high MOI requires a large amount of MeV stock. We would therefore recommend a mid-range MOI of 0.2 TCID50 cell−1 for MeV production. Our findings show that SCM, SFM and CDM are equally suitable for MeV production in terms of yield and process time. This will allow MeV production in serum-free conditions, addressing the safety risks and ethical concerns associated with the use of serum.
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- 2024
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45. Natural Variability of Genomic Sequences of Mal d 1 Allergen in Apples as Revealed by Restriction Profiles and Homolog Polymorphism
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Lucia Urbanová, Jana Bilčíková, Dagmar Moravčíková, and Jana Žiarovská
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Bet v 1 ,Mal d 1 ,polymorphism ,Malus domestica Borkh ,Agriculture - Abstract
Apples are a popular fruit worldwide, with many health and nutritional benefits. However, this fruit is also among those that, particularly in Central and Northern Europe, are allergenic due to the Mal d 1 allergen. Mal d 1 is a homologous allergen to Bet v 1—the main pollen allergen of birch. In this study, two different approaches were used to identify the natural length polymorphism of Bet v 1 homologs in apple varieties, with the aim of characterizing their effectiveness. BBAP (Bet v 1 based amplified polymorphism) and RFLP (restriction fragments length polymorphism) profiles were characterized and compared. RFLP analysis recognizes the genetic diversity of M. domestica Mal d 1 sequences at a relatively low level. In BBAP profiles, the genetic dissimilarity was up to 50%, which appears suitable for intraspecific fingerprinting and serves as an additional method for RFLP analysis. RFLP analysis was able to distinguish some varieties that BBAP could not, such as Sonet.
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- 2024
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46. Characteristics of Two Lagoons in the Coastal Area of the Baltic Sea
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Oskars Purmalis, Laura Grinberga, Linda Dobkevica, Agnija Skuja, Davis Ozolins, Ivars Druvietis, Viesturs Ozols, and Jana Paidere
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lagoons ,zooplankton ,phytoplankton ,water quality ,benthic fauna ,ecosystems ,Physical geography ,GB3-5030 ,Environmental engineering ,TA170-171 ,Technology - Abstract
The proposed study is focused on an ecological analysis of Latvian coastal lagoons, emphasizing their unique but vulnerable nature. Coastal lagoons are recognized as fragile ecosystems of significant ecological, social, and economic value, as recognized by the European Directive 92/43/EEC (Habitats Directive). Despite their protected status, the existence of these ecosystems can be threatened by morphological, hydrological, and anthropogenic changes. The uniqueness of these ecosystems can be determined by the large number of influencing factors and their dynamics. They are affected by seawater, their level of fluctuation, wind exposure, overgrowing with macrophytes, freshwater sources, and water flow generated streams affecting sediment transport and accumulation. All the influencing factors determine a highly trophic ecosystem, which in the studied lagoons is rated as medium to poor ecological status, which confirms the above-mentioned vulnerability and fragility. The aim of this study was to analyze two lagoons in the coastal area of the Baltic Sea in the Riga Gulf, by characterizing, for the first time, their current conditions and ecological parameters because understanding such ecosystems is only partial. The physicochemical composition of lagoon sediments and water shows the impact of seawater by increased electrical conductivity and the concentration of SO42− and Cl− in water, while the presence of detritus in sediments is almost non-existent; thus, the content of organic matter is low with relatively variable pH. The results show that the diversity of studied benthic macroinvertebrates, macrophytes, zooplankton, and even phytoplankton species is low, but there is higher diversity in lagoons and their parts with regular water exchange with the sea. The study provides valuable insight into the ecological dynamics of coastal lagoons in Latvia, shedding light on their current conditions, anthropogenic impact, and the need for sustainable management measures.
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- 2024
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47. Indications from C:N:P Ratios in Surface Sediments along Land-to-Sea Gradients to Support Coastal Nutrient Management
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Svenja Karstens, Jenny Friedrich, Jana K. Geuer, Katharina Grosser, and Jens Schneider von Deimling
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C:N:P ratios ,nutrients ,sediment ,Baltic Sea ,Environmental sciences ,GE1-350 ,Harbors and coast protective works. Coastal engineering. Lighthouses ,TC203-380 ,Geography (General) ,G1-922 - Abstract
Shallow, semi-enclosed coastal systems are particularly prone to eutrophication. Depending on local site conditions and historical nutrient legacies, sea-based measures might be necessary in addition to land-based nutrient removal. In this study, C:N:P ratios were combined with open-source bathymetric information and linked with the prevailing geomorphological and sedimentological regimes to gain insights into nutrient hotspots and understand their sources and fate in coastal waters. Land-based sediment samples were taken behind outlets at three sites in Eckernförde Bay (Baltic Sea), and complemented with ship-based sampling at locations approximately 8 m and 12 m water depth. The total carbon, nitrogen and phosphorus concentrations in surface sediments increased at deeper sites. This suggests that an increased downslope particle transport and deposition regime, based on local geomorphology, might influence nutrient hotspots to a larger extent than proximity to sources (e.g., outlets). Overall, the recorded C:N ratios (mean = 28.12) were closer to the ratio of terrestrial plants than those of marine phytoplankton, indicating allochthonous sources of organic matter.
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- 2023
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48. The Relationship between the Rhizothrichidae Por (Copepoda: Harpacticoida) and the Cletodoidea Bowman & Abele, Including the Establishment of a New Genus and the Description of a New Species
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Kai Horst George, Andreina Zey, and Jana Packmor
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meiofauna ,MGF-Ostsee ,mobile bottom trawling ,phylogeny ,Biology (General) ,QH301-705.5 - Abstract
During expedition EMB-238 of RV EM BORGESE to the Fehmarn Belt (Baltic Sea, Germany) in 2020, specimens of a new species of the Rhizothrichidae Por (Crustacea, Copepoda, Harpacticoida) were found. Currently, Rhizothrichidae enclose two genera: Rhizothrix Sars and Tryphoema Monard. The assignment of the new species is based on the following commonly derived characters: the formation of a strong spinulose (sub)apical element on the last segment of the female A1, and the formation of a long brush seta on the last exopodal and endopodal segments of the P1. The new species could not be assigned to either Rhizothrix or Tryphoema because it lacks their autapomorphies but presents exclusive derived characters, including the absence of the abexopodal seta on the A2 allobasis, the possession of only one seta on the endopods of P2–P4, and the fusion of the female P5 exopod and baseoendopod. Therefore, it is assigned to a new genus. Besides the species description, its phylogenetic position in the Rhizothrichidae as well as its possible relationship with Rhizothrix and Tryphoema are discussed. Furthermore, the affiliation of the Rhizothrichidae with the Cletodoidea is justified on the basis of 17 apomorphies. A key to the rhizothrichid genera is provided.
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- 2023
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49. The Comparison and Brewing Value of Saaz Hop Pedigree
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Jana Olšovská, Lenka Straková, Vladimír Nesvadba, Tomáš Vrzal, and Jaroslav Přikryl
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hops ,Saaz ,lager ,hop oils ,projective mapping ,Nutrition. Foods and food supply ,TX341-641 ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
The well-known hop variety, Saaz, which gives the Pilsner lager beer its characteristic hop aroma, may be threatened by climate change in the future. Therefore, new Saaz-related hop varieties, including Saaz Late, Saaz Brilliant, Saaz Comfort, and Saaz Shine, were recently bred. A comparison study was carried out to evaluate whether these varieties are acceptable for traditional lagers. For this purpose, sensorial and chemical analyses of hops and related beers, namely, an analysis of hop resins and oils, were performed. Sensory profiles of Saaz varieties are very similar (fine, hoppy aroma; floral; herbal), except for Saaz Comfort, which has a slightly higher aroma intensity, and Saaz Shine, which has the most noticeable fruity scent, with traces of citrus. The chemical profiles are also very similar, with α-humulene, β-pinene, (E)-β-farnesene, β-caryophyllene, and myrcene being the most abundant. Decoction mashing and kettle hopping technology with bottom fermentation show that the compared varieties result in very similar lager beers with hoppy, floral, herbal, fruity, and spicy aromas. Typical hop oils include farnesol, linalool, methyl geranate, β-pinene, and limonene. The high concentration of farnesol in beer correlates with the concentrations of (E)-β-farnesene and farnesol in hops. New Saaz varieties are widely used to produce Pilsner lager without affecting the traditional sensory aroma of this widespread style. Varieties have a higher yield of approximately 25% and bitter acid concentrations of approximately 15%, with Saaz Comfort comprising approximately 100%. Furthermore, the concentration of hop oils is approximately 40% higher in Saaz Shine than a traditional Saaz variety. Moreover, Saaz Shine and Saaz Comfort have very good resistance to drought, which is an important property from a climate change perspective.
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- 2024
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50. Effects of Varying Text Message Length and Driving Speed on the Disruptive Effects of Texting on Driving Simulator Performance: Differential Effects on Eye Glance Measures
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Rimzim Taneja, Kawther Alali, Mohammed, Ki-Jana Malone, Brandon Buchanon, Ashley Blanchette, Dung Ho, Doreen Head, and Randall Commissaris
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driving simulator ,texting while driving ,driving speed ,text message length ,eye glance analysis ,distracted driving ,Industrial safety. Industrial accident prevention ,T55-55.3 ,Medicine (General) ,R5-920 - Abstract
Eye glance analysis and driving performance during texting while driving: Differential effects of varying driving speed versus text message length. Background and Objective. Texting while driving continues to be a significant public health concern. Eye glances off the roadway are a measure of the visual distraction associated with texting while driving. In the present study, we examined the effects of two ‘real-world’ factors relating to the adverse effects of texting on driving performance and eye glances off the roadway: (1) text message length and (2) driving speed. Methods. Subjects ‘drove’ a fixed-base simulator and read, typed and sent text messages while driving. In study #1, the driving speed was 60 mph and the effects of short (1 word) versus longer (8–10 words) texts were compared. In study #2, the text messages were short only and driving speed was 60 or 80 mph. Driving performance was assessed using the Standard Deviation of Lane Position (SDLP). Video recordings of the drivers’ faces were used to assess eye glances from the road to the phone—and back—during texting. Results. Texting while driving impaired driving performance as measured by SDLP, and both longer text messages and faster drive speeds made driving performance even worse. Analysis of the eye glance data, however, revealed different effects of these two manipulations. Specifically, longer text messages were associated with an increase in the number of eye glances to the phone during a text message episode, an increase in the total time spent with the eyes off the road, and an increase in the single longest eye glance from the road. Moreover, with longer text messages the longest single eye glance away from the road typically occurred at or near the end of the text message episode. In contrast, increasing driving speed to 80 mph did not affect any of these eye glance measures relative to driving at 60 mph. Conclusion and Application. Both text message length and driving speed while texting adversely affect driving performance, but they do so via different mechanisms. These results have implications for how to tailor “don’t text and drive” messaging to better serve the public health.
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- 2024
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