2,982 results on '"XUE LIU"'
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2. Uncertainty analysis of digital twin model of mine ventilation system
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Peng Cao, Jian Liu, Honglin Wang, Yu Wang, Xue Liu, and Dong Wang
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Mine ventilation system ,Ventilation resistance coefficients ,Uncertainty analysis ,Estimation model ,LHS ,Medicine ,Science - Abstract
Abstract The digital twin model of mine ventilation system (DTMVS) plays an important role in intelligent safety management. However, the uncertainty of the ventilation resistance coefficient, which is the core parameter of the model, makes it challenging to accurately construct a DTMVS. In this study, Latin Hypercube Sampling (LHS) and ventilation resistance coefficient estimation models (VRCEMs) are used to analyze the uncertainty. First, the LHS method was used to explore the effect of uncertainty in the simulated airflow by continuously increasing the level of uncertainty in the ventilation resistance coefficients. Subsequently, the ventilation resistance coefficients were estimated using the VRCEMs, and the uncertainty of the ventilation resistance coefficient and the simulated airflow was analyzed. The results showed that the ventilation resistance coefficients with a 5% coefficient of variation can cause the DTMVS to lose 34% of the real airflow data points. The degree of uncertainty in the ventilation resistance coefficients estimated by the VRCEM-GA (VRCEM using genetic algorithm) and VRCEM-DE (VRCEM using differential evolution algorithm) methods was enhanced by 27.4% and 4.4%, respectively, compared with VRCEM-ES (VRCEM using evolutionary strategy algorithm). The VRCEM-ES model had the least influence on the uncertainty of the simulated airflow of DTMVS. The simulated airflow of the DTMVS constructed based on VRCEMs fluctuated normally within the confidence interval. VRCEMs had a higher sensitivity to the ventilation resistance coefficients of branches with low coefficients of variation.
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- 2024
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3. Association analysis between an epigenetic alcohol risk score and blood pressure
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Helena Bui, Amena Keshawarz, Mengyao Wang, Mikyeong Lee, Scott M. Ratliff, Lisha Lin, Kira S. Birditt, Jessica D. Faul, Annette Peters, Christian Gieger, Thomas Delerue, Sharon L. R. Kardia, Wei Zhao, Xiuqing Guo, Jie Yao, Jerome I. Rotter, Yi Li, Xue Liu, Dan Liu, Juliana F. Tavares, Gökhan Pehlivan, Monique M. B. Breteler, Irma Karabegovic, Carolina Ochoa-Rosales, Trudy Voortman, Mohsen Ghanbari, Joyce B. J. van Meurs, Mohamed Kamal Nasr, Marcus Dörr, Hans J. Grabe, Stephanie J. London, Alexander Teumer, Melanie Waldenberger, David R. Weir, Jennifer A. Smith, Daniel Levy, Jiantao Ma, and Chunyu Liu
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Epigenetic risk score ,DNA methylation ,Blood pressure ,Hypertension ,Alcohol ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Epigenome‐wide association studies have identified multiple DNA methylation sites (CpGs) associated with alcohol consumption, an important lifestyle risk factor for cardiovascular diseases. This study aimed to test the hypothesis that an alcohol consumption epigenetic risk score (ERS) is associated with blood pressure (BP) traits. Results We implemented an ERS based on a previously reported epigenetic signature of 144 alcohol-associated CpGs in meta-analysis of participants of European ancestry. We found a one-unit increment of ERS was associated with eleven drinks of alcohol consumed per day, on average, across several cohorts (p
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- 2024
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4. A qualitative study of patient competence for patient engagement in their safety——from the perspective of nurses and patients
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Ying Lu, Jinjin Zhang, Xue Liu, Yaoling Zhou, Hanqin Zhang, Qiaoyuan Yan, and Na Zeng
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Patient engagement ,Patient safety ,Patient competence ,Qualitative study ,Nursing ,RT1-120 - Abstract
Abstract Objectives To describe the essential competencies required for patient engagement in their own safety. Method We adopted a phenomenological approach in qualitative research to conduct semi-structured interviews with nurses (n = 14) and adult patients (n = 13) from different departments. By deeply exploring their experiences and feelings about patient engagement in patient safety, we sought to understand their views on the qualities that patients need to possess in order to participate in their own safety. Results From the interviews, we identified six major themes, including competence of information sharing, competence of taking patient engagement as responsibility and right, competence of making equal communication, competence of maintaining trust relationship with health personnels, competence of accepting non-punitive safety culture, need of resource support, five of them showed essential competences for patients and one of them showed patients’ need for promoting their engagement. Conclusion The findings of this study show necessary competence and needs in patient engagement process of patient, offer a foundational reference for constructing a measurement tool for patient engagement in patient safety competence in the future, so that medical staff and patients can provide reference for the future targeted construction of patient competence improvement programs. At the same time, improving patient competence and engagement to better achieve safety goals requires the joint efforts of patients, medical staff, medical institutions, the government, and society.
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- 2024
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5. Noise reduction method for mine wind speed sensor data based on CEEMDAN-wavelet threshold
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Yu Wang, Jian Liu, Dong Wang, Xue Liu, Peng Cao, and Kunpeng Hua
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Mine intelligent ventilation ,Mine wind speed sensor ,CEEMDAN ,Wavelet threshold ,Data noise reduction ,Medicine ,Science - Abstract
Abstract The mine wind speed sensor is an important intelligent sensing equipment in the mine intelligent ventilation system that can provide accurate and key wind speed parameters for the intelligent ventilation system. The turbulent pulsation characteristics of the airflow in the underground tunnel are a major factor for the inaccurate measurement of mine wind speed. Therefore, according to the random non-stationary characteristics of a turbulent pulsation signal, a denoising method based on adaptive complete ensemble empirical mode decomposition (CEEMDAN) combined with the wavelet threshold is proposed for suppressing the turbulent pulsation noise in the wind speed signal. First, the CEEMDAN algorithm is used for decomposing the wind speed signal into a series of IMF components. Second, the continuous mean square error criterion is used for determining the high-frequency IMF components with more noise. The wavelet threshold denoising method is used for denoising the high-frequency IMF components with more noise. Finally, the denoised IMF components and remaining low-frequency IMF components are reconstructed for obtaining the denoised signal. The results of the denoising analysis of measured turbulent pulsation signals, comparative analysis of denoising of simulated turbulent pulsation signals by different joint denoising methods, and denoising analysis of actual mine wind speed sensor data indicate that the joint denoising method proposed in this study has a higher signal-to-noise ratio and lower root mean square error of the wind speed signal after denoising. Compared with the EMD-wavelet threshold and EEMD-wavelet threshold denoising methods, the denoising method proposed in this study is better and has higher denoising accuracy, which provides a new method for processing actual mine wind speed sensor data.
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- 2024
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6. Health satisfaction outcome from integrated autonomous mobile clinics
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Yuzhang Huang, Shaoshan Liu, Zhongying Pan, Carl Wu, Herng-Chia Chiu, Xue Liu, and Leiyu Shi
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Digital health ,Integrated care ,Autonomous driving ,AI for health ,Medicine ,Science - Abstract
Abstract Autonomous mobile clinics (AMCs) have the potential to revolutionize healthcare delivery by bringing healthcare services to patients at the order of patient’s fingertips. Particularly, AMCs can act as an essential touch point of integrated care, which is a worldwide response to the fragmented delivery of health by focusing on more coordinated and integrated forms of care provision. However, the impact of AMCs on the health satisfaction outcome effectiveness still remains unknown. In this article, in collaboration with United Family Healthcare (UFH), we study the potential effectiveness improvement of integrated care delivery through AMCs.
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- 2024
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7. Response of the upper ocean to northeast Pacific atmospheric rivers under climate change
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Christine A. Shields, Hui Li, Frederic S. Castruccio, Dan Fu, Kyle Nardi, Xue Liu, and Colin Zarzycki
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Geology ,QE1-996.5 ,Environmental sciences ,GE1-350 - Abstract
Abstract Atmospheric rivers are important transport vehicles for Earth’s water cycle. Using a high-resolution, eddy-resolving Earth System Model, atmospheric river impacts on the upper ocean are investigated by analyzing historical and climate change simulations. For atmospheric rivers along the North American coastline, strong winds cause significant dynamic and thermodynamic upper ocean responses. They push ocean water towards the coast, measured by sea surface height, a process that is amplified under climate change. Mixed layers are deeper upstream of atmospheric rivers, and shallower downstream, however for climate change, shoaling downstream is subdued. Air-sea heat fluxes tend to promote ocean cooling upstream and warming downstream, although different regions have different climate change heat flux signals. Southern California heat flux changes due to warming are driven by evaporative processes and strengthen the ocean responses seen in historical simulations. The regions north are primarily dominated by sensible heat flux changes and counter the historical patterns.
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- 2024
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8. Mechanical properties and acoustic emission characteristics of basalt fiber reinforced cemented silty sand subjected to freeze–thaw cycles
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Shuang Sun, Xue Liu, Hanbing Liu, Chenglin Shi, Lina Xu, Zhanfang Huang, and Yongqiang Sui
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Seasonally frozen zones ,Freeze–thaw (F–T) cycles ,Basalt fiber (BF) reinforced cemented silty sand ,Unconfined compression strength (UCS) ,Acoustic emission (AE) characteristics ,Medicine ,Science - Abstract
Abstract Freeze–thaw (F–T) cycling poses a significant challenge in seasonally frozen zones, notably affecting the mechanical properties of soil, which is a critical consideration in subgrade engineering. Consequently, a series of unconfined compressive strength tests were conducted to evaluate the influence of various factors, including fiber content, fiber length, curing time, and F–T cycles on the unconfined compression strength (UCS) of fiber-reinforced cemented silty sand. In parallel, acoustic emission (AE) testing was conducted to assess the AE characteristic parameters (e.g., cumulative ring count, cumulative energy, energy, amplitude, RA, and AF) of the same material under F–T cycles, elucidating the progression of F–T-induced damage. The findings indicated that UCS initially increased and then declined as fiber content increased, with the optimal fiber content identified at 0.2%. UCS increased with prolonged curing time, while increases in fiber length and F–T cycles led to a reduction in UCS, which then stabilized after 6 to 10 cycles. Stable F–T cycles resulted in a strength loss of approximately 30% in fiber-reinforced cemented silty sand. Furthermore, AE characteristic parameters strongly correlated with the stages of damage. F–T damage was segmented into three stages using cumulative ring count and cumulative energy. An increase in cumulative ring count to 0.02 × 104 times and cumulative energy to 0.03 × 104 mv·μs marked the emergence of critical failure points. A sudden shift in AE amplitude indicated a transition in the damage stage, with an amplitude of 67 dB after 6 F–T cycles serving as an early warning of impending failure.
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- 2024
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9. Systemic immunity-inflammation index is associated with body fat distribution among U.S. adults: evidence from national health and nutrition examination survey 2011–2018
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Xue Liu, Yuhao Zhang, Yuchen Li, Yaodong Sang, Yuwei Chai, Li Zhang, and Haiqing Zhang
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Systemic immunity-inflammation index ,Body fat distribution ,Population-based study ,NHANES ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Abstract Objective The systemic immunity-inflammation index (SII) is a newly developed biomarker that provides an integrated measure of inflammation in the body. We aim to evaluate the relationship between SII and body fat distribution. Methods Adults from the National Health and Nutrition Examination Survey (NHANES) 2011–2018 were included. The SII was computed using lymphocyte (LC), neutrophil (NC), and platelet (PC) counts as its components. Body fat distribution was assessed by (total, android, gynoid) percentage fat, total abdominal fat area, subcutaneous adipose tissue area, visceral adipose tissue area, and the ratio of visceral to subcutaneous adipose tissue area (V/S ratio). Multivariable weighted linear regression and subgroup analysis were use to examine the relationships between fat distribution and SII. Restricted cubic splines (RCS) and threshold effect analysis were used to examine analyze nonlinear associations. Results After exclusions, a total of 11,192 adults with a weighted mean age of 38.46 ± 0.26 years were studied. In multivariable weighted linear regression, each level increase in log2SII was associated with increased of 0.23 SDs total percentage fat (95% CI = 0.03, 0.43) and 0.26 SDs android percentage fat (95% CI = 0.06, 0.47). Besides, the subgroup analysis showed that the positive association between SII and android percentage fat was mainly among obese individuals (BMI > 30 kg/m2) and non-obese individuals without DM or hypertension. Meanwhile, the relationship between SII and the V/S ratio was found to be significant in the female subgroup, the obese subgroup, individuals with non-alcoholic fatty liver disease (NAFLD), and those without diabetes mellitus. Finally, SII exhibited an inverted U-shaped relationship with total percentage fat, android percent fat and total abdominal fat. Accordingly, threshold effect analysis indicated a positive association between lower SII levels and total percentage fat, android percentage fat and total abdominal fat area. Conclusions In the nationwide study, it was observed that the SII exhibited a significant correlation with higher levels of body fat, specifically android fat. This association was particularly noticeable within specific subgroups of the population.
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- 2024
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10. ACL1-ROC4/5 complex reveals a common mechanism in rice response to brown planthopper infestation and drought
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Zhihuan Tao, Lin Zhu, Haichao Li, Bo Sun, Xue Liu, Dayong Li, Wenli Hu, Shanshan Wang, Xuexia Miao, and Zhenying Shi
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Science - Abstract
Abstract Brown planthopper (BPH) is the most destructive insect pest of rice. Drought is the most detrimental environmental stress. BPH infestation causes adaxial leaf-rolling and bulliform cells (BCs) shrinkage similar to drought. The BC-related abaxially curled leaf1 (ACL1) gene negatively regulates BPH resistance and drought tolerance, with decreased cuticular wax in the gain-of-function mutant ACL1-D. ACL1 shows an epidermis-specific expression. The TurboID system and multiple biochemical assays reveal that ACL1 interacts with the epidermal-characteristic rice outermost cell-specific (ROC) proteins. ROC4 and ROC5 positively regulate BPH resistance and drought tolerance through modulating cuticular wax and BCs, respectively. Overexpression of ROC4 and ROC5 both rescue ACL1-D mutant in various related phenotypes. ACL1 competes with ROC4/ROC5 in homo-dimer and hetero-dimer formation, and interacts with the repressive TOPLESS-related proteins. Altogether, we illustrate that ACL1–ROC4/5 complexes synergistically mediate drought tolerance and BPH resistance through regulating cuticular wax content and BC development in rice, a mechanism that might facilitate BPH-resistant breeding.
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- 2024
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11. The non-high-density lipoprotein cholesterol to high-density lipoprotein cholesterol ratio (NHHR) is associated with thyroid hormones and thyroid hormone sensitivity indices: a cross-sectional study
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Yuchen Li, Yuwei Chai, Xue Liu, Xinhui Wang, Xue Meng, Mulin Tang, Li Zhang, and Haiqing Zhang
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NHHR ,Thyroid function ,Thyroid hormone sensitivity indices ,NHANES ,Cross-sectional study ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Abstract Background Lipids and thyroid hormones (TH) are closely interrelated. However, previous studies have not mentioned the linkage encompassing the non-high-density lipoprotein cholesterol to high-density lipoprotein cholesterol ratio (NHHR) alongside TH level, as well as sensitivity indices. Methods This cross-sectional study leverages expansive datasets from the National Health and Nutrition Examination Survey (NHANES) spanning 2007 to 2012. Weighted multivariate linear regression, smoothed curve fitting and sensitivity analyses were used to investigate the associations of the NHHR with the thyroid. Subgroup analyses and interaction tests were conducted to determine the robustness of the findings across diverse segments of the population, ensuring the consistency and generalizability of the observed associations. Results The NHHR was significantly positively correlated with free triiodothyronine (FT3) levels, thyroid-stimulating hormone (TSH) levels, the FT3 to FT4 ratio (FT3/FT4), and the quantile-based thyroid feedback index for FT3 (TFQIFT3) and negatively correlated with free thyroxin (FT4) levels [0.17(0.07–0.27), P = 0.001; 0.60 (0.03–1.17), P = 0.040; 0.06 (0.04–0.08), P
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- 2024
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12. Hfq-binding small RNA PqsS regulates Pseudomonas aeruginosa pqs quorum sensing system and virulence
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Tianyuan Jia, Xianbiao Bi, Menglu Li, Chenhui Zhang, Anmin Ren, Shangru Li, Tian Zhou, Yingdan Zhang, Yang Liu, Xue Liu, Yinyue Deng, Bin Liu, Guobao Li, and Liang Yang
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Microbial ecology ,QR100-130 - Abstract
Abstract Pseudomonas aeruginosa is a widespread nosocomial pathogen with a significant to cause both severe planktonic acute and biofilm-related chronic infections. Small RNAs (sRNAs) are noncoding regulatory molecules that are stabilized by the RNA chaperone Hfq to trigger various virulence-related signaling pathways. Here, we identified an Hfq-binding sRNA in P. aeruginosa PAO1, PqsS, which promotes bacterial pathogenicity and pseudomonas quinolone signal quorum sensing (pqs QS) system. Specifically, PqsS enhanced acute bacterial infections by inducing host cell death and promoting rhamnolipid-regulated swarming motility. Meanwhile, PqsS reduced chronic infection traits including biofilm formation and antibiotic resistance. Moreover, PqsS repressed pqsL transcript, increasing PQS levels for pqs QS. A PQS-rich environment promoted PqsS expression, thus forming a positive feedback loop. Furthermore, we demonstrated that the PqsS interacts and destabilizes the pqsL mRNA by recruiting RNase E to drive degradation. These findings provide insights for future research on P. aeruginosa pathogenesis and targeted treatment.
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- 2024
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13. A near-complete chromosome-level genome assembly of looseleaf lettuce (Lactuca sativa var. crispa)
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Bin Zhang, Yingfei Xue, Xue Liu, Haifeng Ding, Yesheng Yang, Chenchen Wang, Zhaoyang Xu, Jun Zhou, Cheng Sun, Jinfu Tang, and Dayong Li
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Science - Abstract
Abstract Lettuce (Lactuca sativa L., Asteraceae) is one of the most important vegetable crops, known for its various horticultural types and significant morphological variation. The first reference genome of lettuce, a crisphead type (L. sativa var. capitata cv. Salinas), was previously released. Here, we reported a near-complete chromosome-level reference genome for looseleaf lettuce (L. sativa var. crispa). PacBio high-fidelity sequencing, Oxford Nanopore, and Hi-C technologies were employed to produce genome assembly. The final assembly is 2.59 Gb in length with a contig N50 of 205.47 Mb, anchored onto nine chromosomes, containing 14 recognizable telomeres and only 11 gaps. Repetitive sequences account for 77.11% of the genome, and 41,375 protein-coding genes were predicted, with 99.10% of these assigned functional annotations. This chromosome-level genome enriched genomic resources for various horticultural types of lettuce and will facilitate the characterization of morphological variation and genetic improvement in lettuce.
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- 2024
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14. Adaptive spatiotemporal neural networks through complementary hybridization
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Yujie Wu, Bizhao Shi, Zhong Zheng, Hanle Zheng, Fangwen Yu, Xue Liu, Guojie Luo, and Lei Deng
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Science - Abstract
Abstract Processing spatiotemporal data sources with both high spatial dimension and rich temporal information is a ubiquitous need in machine intelligence. Recurrent neural networks in the machine learning domain and bio-inspired spiking neural networks in the neuromorphic computing domain are two promising candidate models for dealing with spatiotemporal data via extrinsic dynamics and intrinsic dynamics, respectively. Nevertheless, these networks have disparate modeling paradigms, which leads to different performance results, making it hard for them to cover diverse data sources and performance requirements in practice. Constructing a unified modeling framework that can effectively and adaptively process variable spatiotemporal data in different situations remains quite challenging. In this work, we propose hybrid spatiotemporal neural networks created by combining the recurrent neural networks and spiking neural networks under a unified surrogate gradient learning framework and a Hessian-aware neuron selection method. By flexibly tuning the ratio between two types of neurons, the hybrid model demonstrates better adaptive ability in balancing different performance metrics, including accuracy, robustness, and efficiency on several typical benchmarks, and generally outperforms conventional single-paradigm recurrent neural networks and spiking neural networks. Furthermore, we evidence the great potential of the proposed network with a robotic task in varying environments. With our proof of concept, the proposed hybrid model provides a generic modeling route to process spatiotemporal data sources in the open world.
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- 2024
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15. Extracellular vesicle-bound VEGF in oral squamous cell carcinoma and its role in resistance to Bevacizumab Therapy
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Jiasheng Zhou, Xue Liu, Qi Dong, Jiao Li, Weidong Niu, and Tingjiao Liu
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Vascular endothelial growth factor ,Oral squamous cell carcinoma ,Extracellular vesicles ,Bevacizumab ,Heparan sulfate proteoglycans ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Cytology ,QH573-671 - Abstract
Abstract Background Vascular endothelial growth factor (VEGF) is an important proangiogenic factor and has been considered as a key target of antiangiogenetic therapy in oral squamous cell carcinoma (OSCC). However, clinical application of bevacizumab, a specific VEGF antibody, didn’t improve the survival rate of OSCC patients. One possible explanation is that VEGF gene expresses diverse isoforms, which associate with extracellular vesicles (EVs), and EVs potentially contribute to VEGF resistance to bevacizumab. However, clear solution is lacking in addressing this issue. Methods Expression of VEGF isoforms in OSCC cells was confirmed by reverse transcription and polymerase chain reaction (RT-PCR) and western blot. EVs isolated from OSCC cell’s conditioned medium (CM) were characterized by western blot, transmission electron microscopy (TEM) and nanoparticle tracking analysis (NTA). Flow cytometry, immunogold labeling and western blot were applied to study the VEGF on EVs. Tube formation assay and Matrigel plug angiogenesis assay were used for analyzing the angiogenesis capacity of EV-VEGF. Results The most popular isoforms expressed by VEGF gene are VEGF121, VEGF165 and VEGF189. In this study, we demonstrated that all three isoforms of mRNA could be detected at varying levels in OSCC cells, while only VEGF165 and VEGF189 proteins were found. CM derived from OSCC cells, both soluble and non-soluble forms of VEGF could be detected. We further confirmed the presence of VGEF189 bound to EVs as a non-soluble form. EV-bound VEGF189 presented angiogenic activity, which could not be neutralized by bevacizumab. It was found that VEGF189 bound to EVs by heparan sulfate proteoglycans (HSPG). In addition, the angiogenic effect of EV-VEGF could be reversed by surfen, a kind of HSPG antagonist both in vitro and in vivo. Conclusion Antagonists targeting HSPG might potentially overcome the resistance of EV-VEGF to bevacizumab and serve as an alternative for anti-VEGF therapy in OSCC.
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- 2024
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16. Development Status and Research Progress of Unconventional Brine-type Lithium Resources
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Xue LIU, Junwei ZHENG, Wenhao LIU, and Liwei WANG
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mining engineering ,lithium ,geothermal brines ,oil (gas) fieldbrines ,seawater ,critical minerals ,strategic minerals ,Mining engineering. Metallurgy ,TN1-997 - Abstract
This is an article in the field of mining engineering. As an important battery raw material in the field of new energy, the global demand for lithium is accelerating. For a long time, China has needed to import a large amount of lithium raw materials, and there is still expected to be a significant demand gap in the future. Unconventional brine sources such as geothermal brine, oil and gas field brine, and desalination wastewater in seawater containing contain considerable lithium resources and may become an effective supplement to conventional lithium resources. As a green and sustainable method for extracting lithium resources, the development of unconventional brine-type lithium resources faces significant opportunities. The discovery of abundant unconventional brine-type lithium resources in Sichuan, Xizang, Yunnan and other places in China will be of great help to solve the shortage of lithium raw material supply in China. By summarizing the current status and progress of unconventional brine-type lithium resource development and its key technologies both domestically and internationally, this article provides a reference for the development of unconventional brine-type lithium resources in China.
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- 2024
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17. The interrelationships of CSF sTREM2, AD pathology, minimal depressive symptoms, and cognition in non-demented adults
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Xue Liu, Guang-Xiang Yu, Mei Xue, Liang-Yu Huang, Yan Fu, Zuo-Teng Wang, Lan Tan, and Ya-Nan Ou
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sTREM2 ,Minimal depressive symptoms ,Alzheimer’s disease ,Amyloid pathology ,Cognition ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Microglial activation has been suggested to be involved in the pathogenesis of depression and Alzheimer’s disease (AD). Soluble triggering receptor expressed on myeloid cells 2 (sTREM2) is a marker of microglial activation. The purpose of this study was to investigate the interrelationships of cerebrospinal fluid (CSF) sTREM2, AD pathology, as well as minimal depressive symptoms (MDSs), and cognition. Methods A total of 545 non-demented individuals from the Alzheimer’s Disease Neuroimaging Initiative cohort were included in our study. The average age of the total population was 72.6 years and the percentage of females was 42.6%. Linear regression models were conducted to investigate the linear relationships of MDSs with CSF sTREM2, AD pathology, cognition, and brain structure. Mediation models and structural equation models (SEM) were conducted to examine whether CSF sTREM2 mediated the relationships of MDSs with AD pathology and cognition. Results Results revealed that individuals with MDSs had lower CSF sTREM2 levels than normal controls. Linear regression showed that MDSs were linearly associated with CSF sTREM2 (P FDR = 0.012) and amyloid biomarkers (P FDR < 0.05), as well as cognitive scores (P FDR < 0.05) and hippocampal volume (P FDR = 0.003). Mediation analyses revealed that CSF sTREM2 mediated the association between MDSs and amyloid pathology, with the mediating proportions ranging from 6.030 to 18.894%. However, SEM failed to reveal that MDS affected cognition through CSF amyloid pathology and CSF sTREM2. Conclusions MDSs are associated with amyloid pathology and cognition. CSF sTREM2 may potentially be an intervenable target between depression and AD pathology.
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- 2024
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18. Evolution and related pathogenic genes of Pseudodiploöspora longispora on Morchella based on genomic characterization and comparative genomic analysis
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Jiangtao Xie, Xue Liu, Zaili Qin, Shihui Mei, Entaj Tarafder, Chao Li, Xiangyu Zeng, and Fenghua Tian
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Edible fungi ,White mold disease ,CAZymes ,Homologous gene ,Secondary metabolism ,Gene cluster ,Medicine ,Science - Abstract
Abstract True morels (Morchella) are globally renowned medicinal and edible mushrooms. White mold disease caused by fungi is the main disease of Morchella, which has the characteristics of wide incidence and strong destructiveness. The disparities observed in the isolation rates of different pathogens indicate their varying degrees of host adaptability and competitive survival abilities. In order to elucidate its potential mechanism, this study, the pathogen of white mold disease from Dafang county, Guizhou Province was isolated and purified, identified as Pseudodiploöspora longispora by morphological, molecular biological and pathogenicity tests. Furthermore, high-quality genome of P. longisporus (40.846 Mb) was assembled N50 of 3.09 Mb, predicts 7381 protein-coding genes. Phylogenetic analysis of single-copy homologous genes showed that P. longispora and Zelopaecilomyces penicillatus have the closest evolutionary relationship, diverging into two branches approximately 50 (44.3–61.4) MYA. Additionally, compared with the other two pathogens causing Morchella disease, Z. penicillatus and Cladobotryum protrusum, it was found that they had similar proportions of carbohydrate enzyme types and encoded abundant cell wall degrading enzymes, such as chitinase and glucanase, indicating their important role in disease development. Moreover, the secondary metabolite gene clusters of P. longispora and Z. penicillatus show a high degree of similarity to leucinostatin A and leucinostatin B (peptaibols). Furthermore, a gene cluster with synthetic toxic substance Ochratoxin A was also identified in P. longispora and C. protrusum, indicating that they may pose a potential threat to food safety. This study provides valuable insights into the genome of P. longispora, contributing to pathogenicity research.
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- 2024
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19. Therapeutic potentials of peptide-derived nanoformulations in atherosclerosis: present status and future directions
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Xue Liu, Weijiao Wang, Qiang Li, Hongtao Niu, and Weili Zhang
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Atherosclerosis ,anti-atherosclerotic drugs ,bioavailability ,peptide-based nanomedicines ,drug targeting ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Atherosclerosis is a severe cardiovascular disease followed by the accumulation of atherosclerotic plaques within the lumen of blood vessels resulting in reduced blood flow thus initiating a series of events. Conventional therapies for atherosclerosis encounter multiple challenges, especially difficulty in precisely concentrating in certain affected regions and the potential for unwanted side effects. Consequently, scientists are focused on developing nanoformulations for atherosclerosis diagnosis and therapy. Peptide-based nanomedicines improve conventional therapies by offering improved structural and therapeutic stability and enabling target-specific delivery. Their inherent biocompatibility and biodegradability additionally render them desirable materials intended for in vivo use. This review manuscript aims to provide an in-depth overview of peptide-based nanomedicines for atherosclerosis, focusing on targeted cells like endothelial cells, macrophages, and monocytes and their interaction with different plaque components. Moreover, the manuscript also highlights the latest progress in multimodal techniques and provides a comprehensive overview of limitations associated with their practical implementation.
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- 2024
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20. Buxu Tongyu Granule Alleviates Myocardial Ischemia by Activating Vascular Smooth Muscle Cell Soluble Guanylate Cyclase to Inhibit Abnormal Vasomotion
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Shuang Yang, Yixiu Zhao, Xiaoling Cheng, Tingting Zhan, Jiaying Tian, Xue Liu, Chunyue Ma, Zhiqi Wang, Luying Jin, Qian Liu, Yanli Wang, Jian Huang, Jinhui Wang, Yan Zhang, and Baofeng Yang
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Myocardial ischemia ,Vasomotion ,Soluble guanylate cyclase ,Buxu Tongyu Granule ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Myocardial ischemia is a serious threat to human health, and vascular dysfunction is its main cause. Buxu Tongyu (BXTY) Granule is an effective traditional Chinese medicine (TCM) for treating myocardial ischemia. However, the underlying mechanism of BXTY is still unclear. In this study, we demonstrate that BXTY ameliorates myocardial ischemia by activating the soluble guanylate cyclase (sGC)–3′,5′-cyclic guanosine monophosphate (cGMP)–protein kinase G (PKG) signaling pathway in vascular smooth muscle cells (VSMCs) to dilate the arteries. BXTY was given by gavage for ten consecutive days before establishing an animal model of acute myocardial ischemia in mice via the intraperitoneal injection of pituitrin. The results showed that BXTY alleviated the symptoms of myocardial ischemia induced by pituitrin in mice, including electrocardiogram abnormalities and changes in plasma enzymes. In addition, BXTY dilated pre-constricted blood vessels and inhibited the vasoconstriction of the superior mesenteric artery in a dose-dependent but endothelial-independent manner. These effects were eliminated by pre-incubating vascular rings with the sGC inhibitors NS 2028 or ODQ, or with the PKG inhibitor KT 5823. Moreover, BXTY increased the protein expression of sGC-β1 and the intracellular second messenger cGMP level in mouse aortic vascular smooth muscle cells (MOVAs). NS 2028 or ODQ reversed these effects of BXTY. The expression level of the cGMP downstream effector protein PKG-1 increased after treating MOVAs with BXTY. NS 2028, ODQ, or KT 5823 also reversed this effect of BXTY. In conclusion, BXTY can improve the symptoms of acute myocardial ischemia in mice, and activating the sGC–cGMP–PKG pathway in VSMCs to induce vasodilation is its key pharmacodynamic mechanism.
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- 2024
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21. MORC2 regulates RBM39-mediated CDK5RAP2 alternative splicing to promote EMT and metastasis in colon cancer
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Yuxin He, Yangguang Shao, Zhihui Zhou, Tingting Li, Yunling Gao, Xue Liu, Gang Yuan, Gaoxiang Yang, Lili Zhang, and Feng Li
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Cytology ,QH573-671 - Abstract
Abstract Colorectal carcinogenesis and progression are associated with aberrant alternative splicing, yet its molecular mechanisms remain largely unexplored. Here, we find that Microrchidia family CW-type zinc finger 2 (MORC2) binds to RRM1 domain of RNA binding motif protein 39 (RBM39), and RBM39 interacts with site 1 of pre-CDK5RAP2 exon 32 via its UHM domain, resulting in a splicing switch of cyclin-dependent kinase 5 regulatory subunit associated protein 2 (CDK5RAP2) L to CDK5RAP2 S. CDK5RAP2 S promotes invasion of colorectal cancer cells in vitro and metastasis in vivo. Mechanistically, CDK5RAP2 S specifically recruits the PHD finger protein 8 to promote Slug transcription by removing repressive histone marks at the Slug promoter. Moreover, CDK5RAP2 S, but not CDK5RAP2 L, is essential for the promotion of epithelial-mesenchymal transition induced by MORC2 or RBM39. Importantly, high protein levels of MORC2, RBM39 and Slug are strongly associated with metastasis and poor clinical outcomes of colorectal cancer patients. Taken together, our findings uncover a novel mechanism by which MORC2 promotes colorectal cancer metastasis, through RBM39-mediated pre-CDK5RAP2 alternative splicing and highlight the MORC2/RBM39/CDK5RAP2 axis as a potential therapeutic target for colorectal cancer.
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- 2024
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22. Development and application of a new physical simulation system for coal and gas outburst
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Yongqian LIU, Zhonggang HUO, Hongyan LI, Longyong SHU, Zhongxue SUN, Dong WANG, Xue LIU, and Xingwang SHI
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coal and gas outburst ,physical simulation ,geological structure ,outburst inducing technique ,control system ,equipment development ,Geology ,QE1-996.5 ,Mining engineering. Metallurgy ,TN1-997 - Abstract
A physical mechanics simulation experiment is one of the important technical methods to study the inoculation mechanism and development laws of coal and gas outburst. A new type of coal and gas outburst simulation system has been developed, aiming at developing an advanced experimental design scheme with the help of existing advanced monitoring technology, combined with specific gas geology conditions, to realize the simulation of coal and gas outburst phenomenon in complex scenes, and to promote the study of coal and gas outburst mechanism. The physical mechanics simulation system consists of following seven parts: stress loading subsystem, test chamber subsystem, power traction subsystem, gas pressure control subsystem, induced equipment subsystem, simulated roadway subsystem, and measurement and control subsystem. The design of each subsystem has been improved to different degrees, and the whole system has formed a landmark innovation. The simulation system has the following characteristics: ① the high load loading and unloading function of the three-axis synchronous continuous non-uniform loading technical equipment is improved. The specimen loading is done by 10 independent indenters in X, Y, and Z directions. The size of the experimental chamber is 400 mm × 400 mm × 1200 mm, the maximum load strength is 25 MPa, and the maximum closed gas pressure is 6.0 MPa. Each of the above 10 indenters can operate asynchronously or synchronously for loading or unloading tasks according to instructions, and horizontal stress loading and unloading layered processing function is implemented. ② An integrated process of systematic sample preparation, sample packing, sealing, and loading has been formed completely. The experimental chamber is designed as a new type of split structure, and the dynamic traction system is used to assist the experimental chamber to complete the molding, stress loading and material handling, and the translation amount of the chamber structure is controlled accurately. ③ The four kinds of technologies for inducing coal and gas outburst are integrated and applied in the same simulation platform, and some equipment functional innovations are realized, such as the test chamber, the pressure relief window, etc. Many kinds of technology and equipment have been successfully developed, as original innovation products, the dynamic technology and the drilling equipment have been verified by the experimental simulation. ④ The design innovation of key device structure is realized. The problems of stress concentration and high pressure gas leakage under synchronous loading are solved by the design of double-layer steel plate chamber structure. The experimental efficiency is improved by the structural optimization of the launching cavity, the safety of the simulation system is significantly improved by the design of the pipe end structure, a combination of soft and hard material pipe structure, and the variable diameter drilling technology has achieved the engineering application of the Rouleauxs triangle theory. ⑤ Simulation test precision is generated by multivariate information. Advanced data acquisition systems (stress, gas pressure, temperature, etc.) and monitoring technology equipment including acoustic emission and high-speed cameras are used to achieve multi-data monitoring of coal and gas outburst. ⑥ The reliability of the experimental system has been verified by laboratory simulation. Through the case simulation of the “3·22 accident in Pingdingshan”, the overall test of the system function is completed, and the influence law of fault structure on in-situ stress, gas pressure and temperature in the process of coal and gas outburst is discovered in a new way. It is proved that the physical mechanics simulation system is reliable and could provide a platform to support the research on the coal and gas outburst mechanism.
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- 2024
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23. Stepping forward: T-cell redirecting bispecific antibodies in cancer therapy
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Xiaojing Qin, Wenjing Ning, Han Liu, Xue Liu, Wenxin Luo, and Ningshao Xia
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Bispecific antibody (BsAbs) ,T-cell redirecting BsAbs ,Tumor-associated antigens ,Toxicity ,Cytokine release syndrome ,Tumor microenvironment ,Therapeutics. Pharmacology ,RM1-950 - Abstract
T cell-redirecting bispecific antibodies are specifically designed to bind to tumor-associated antigens, thereby engaging with CD3 on the T cell receptor. This linkage between tumor cells and T cells actively triggers T cell activation and initiates targeted killing of the identified tumor cells. These antibodies have emerged as one of the most promising avenues within tumor immunotherapy. However, despite success in treating hematological malignancies, significant advancements in solid tumors have yet to be explored. In this review, we aim to address the critical challenges associated with T cell-redirecting bispecific antibodies and explore novel strategies to overcome these obstacles, with the ultimate goal of expanding the application of this therapy to include solid tumors.
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- 2024
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24. Robust multi-stage progressive autoencoder for hyperspectral anomaly detection
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Qing Guo, Yi Cen, Lifu Zhang, Yan Zhang, Shunshi Hu, and Xue Liu
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Anomaly detection ,autoencoder (AE) ,hyperspectral image (HSI) ,Multi-scale feature fusion ,Multi-stage learning ,Physical geography ,GB3-5030 ,Environmental sciences ,GE1-350 - Abstract
Recently, Autoencoders (AEs) have demonstrated remarkable performance in the field of hyperspectral anomaly detection, owing to their powerful capability in handling high-dimensional data. However, they often overlook the inherent global distribution characteristics and long-range dependencies in hyperspectral images (HSI). This oversight makes it challenging to accurately characterize and describe boundaries between different backgrounds and anomalies in complex HSI, thereby affecting detection accuracy. To address this issue, a robust multi-stage progressive autoencoder for hyperspectral anomaly detection (RMSAD) is proposed. Initially, a progressive multi-stage learning framework based on convolutional autoencoders is employed. This framework incrementally reveals and integrates deep contextual features along with their long-range dependencies in HSI, aiming to accurately characterize the background and anomalies. Subsequently, an innovative multi-scale fusion strategy is introduced at the intersections of each stage, reinforcing the learning and representation of background and global spatial details across multiple stages. Finally, by collectively extracting abnormal spatial information across stages, effectively reducing the tendency of autoencoders to reconstruct anomalies. This ensures the efficient restoration and replication of global textural details in HSI. The experimental results on the six HSI datasets demonstrate that the proposed RMSAD is superior to other state-of-the-art methods.
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- 2024
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25. Regulating Aggregation‐Induced Emission Luminogen for Multimodal Imaging‐Navigated Synergistic Therapy Involving Anti‐Angiogenesis
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Fei Zhang, Jie Cui, Yao Zhang, Miao Yan, Xiaoxiao Wu, Xue Liu, Dingyuan Yan, Zhijun Zhang, Ting Han, Hui Tan, Dong Wang, and Ben Zhong Tang
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aggregation‐induced emission ,anti‐angiogenesis ,multimodal phototheranostics ,NIR‐II FLI ,Science - Abstract
Abstract As a new avenue for cancer research, phototheranostics has shown inexhaustible and vigorous vitality as it permits real‐time diagnosis and concurrent in situ therapy upon non‐invasive light‐initiation. However, construction of an advanced material, allowing prominent phototheranostic outputs and synchronously surmounting the inherent deficiency of phototheranostics, would be an appealing yet significantly challenging task. Herein, an aggregation‐induced emission (AIE)‐active luminogen (namely DBD‐TM) featured by intensive electron donor‐acceptor strength and twisted architecture with finely modulated intramolecular motion, is tactfully designed and prepared. DBD‐TM simultaneously possessed fluorescence emission in the second near‐infrared (NIR‐II) region and high‐efficiency photothermal conversion. By integrating DBD‐TM with anti‐angiogenic agent sorafenib, a versatile nanomaterial is smoothly fabricated and utilized for trimodal imaging‐navigated synergistic therapy involving photothermal therapy and anti‐angiogenesis toward cancer. This advanced approach is capable of affording accurate tumor diagnosis, complete tumor elimination, and largely restrained tumor recurrence, evidently denoting a prominent theranostic formula beyond phototheranostics. This study will offer a blueprint for exploiting a new generation of cancer theranostics.
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- 2024
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26. Optically Active Defect Engineering via Plasma Treatment in a MIS‐Type 2D Heterostructure
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Yingjie Tao, Ran Tian, Jiayuan Zhou, Kui Chu, Xuegang Chen, Wenshuai Gao, Guopeng Wang, Yuxuan Jiang, Kenji Watanabe, Takashi Taniguchi, Mingliang Tian, and Xue Liu
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defect engineering ,ICP treatment ,MIS‐type vdW heterostructure ,photodetector ,Physics ,QC1-999 ,Technology - Abstract
Abstract At the interface of 2D heterostructures, the presence of defects and their manipulation play a crucial role in the interfacial charge transfer behavior, further influencing the device functionality and performance. In this study, the impact of deliberately introduced photo‐active defects in the h‐BN layer on the interfacial charge transfer and photoresponse performance of a metal‐insulator‐semiconductor type heterostructure device is explored. The formation and concentration of defects are qualitatively controlled using an inductive coupled plasma treatment method, as evidenced by enhanced h‐BN defect emission and more efficient optically induced doping of graphene at the graphene/h‐BN interface. Besides, the use of the h‐BN layer between graphene and WS2 not only suppresses charge carriers in the dark state, but also promotes the separation of photo‐generated electron‐hole pairs and interfacial charge transfer due to the existence of defect levels, leading to orders of magnitude improvement in the light on/off ratio and self‐driving performance of the heterostructure photodetector. This strategy of controlling defect states in the insulating layer provides a new approach to optimize the charge transfer processes at the 2D interfaces, so as to expand its potential applications in the fields of electronic and optoelectronic devices.
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- 2024
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27. Spatial pattern and coupling characteristics analysis of maritime traffic and economic development based on shipping big data
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Ping Wang, Yubo Wen, Bo Ai, and Xue Liu
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maritime transport network density ,economic development level ,traffic advantage degree ,coupling and coordination ,automatic identification system (AIS) ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
The rapid development of maritime transport and the gradual increase in the number of ports, ships and shipping routes can produce direct economic benefits for regional development, and a profound grasp of the actual situation of maritime transport makes it possible to make practical plans for economic development and thus rationally develop and use marine resources. However, there is a lack of research on maritime transport, so this study is based on the AIS, waterways, routes and ports data in the near-shore sea area of Guangdong Province. Using GIS spatial analysis technology and various mathematical models, we refer to the evaluation method of road traffic dominance. It analyses and proposes the evaluation indexes of maritime traffic advantages, such as the density of maritime traffic network and the proximity of ports. Based on the actual situation of the study regions, the indicators were quantitatively evaluated and analyzed. The economic development level of each region was also quantitatively evaluated using principal component analysis, and the study regions were classified based on the coupling-coordination model. The results show that the coastal area of Guangdong Province is divided into four types of zones according to the coupling-coordination type of zoning criteria. Corresponding development suggestions are put forward for different zones, and the research results provide certain practical guidelines for promoting the benign cycle development of maritime traffic and economy, and have important guiding significance and application value for the organization and safety of maritime traffic.
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- 2024
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28. Glucose uptake in trophoblasts of GDM mice is regulated by the AMPK-CLUT3 signaling pathway
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Zhenghua Xiao, Xue Liu, Xiaojin Luan, Ran Duan, Wei Peng, Chao Tong, Juan Qiao, and Hongbo Qi
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Gestational diabetes mellitus ,GLUT3 ,AMPK ,Glucose uptake ,AICAR ,Medicine ,Science - Abstract
Abstract GDM, as a metabolic disease during pregnancy, regulates GLUT3 translocation by AMPK, thereby affecting glucose uptake in trophoblasts. It provides a new research idea and therapeutic target for alleviating intrauterine hyperglycemia in GDM. STZ was used to construct GDM mice, inject AICAR into pregnant mice, and observe fetal and placental weight; flow cytometry was employed for the detection of glucose uptake by primary trophoblast cells; immunofluorescence was applied to detect the localization of GLUT3 and AMPK in placental tissue; Cocofal microscope was used to detect the localization of GLUT3 in trophoblast cells;qRT-PCR and Western blot experiments were carried out to detect the expression levels of GLUT3 and AMPK in placental tissue; CO-IP was utilized to detect the interaction of GLUT3 and AMPK. Compared with the normal pregnancy group, the weight of the fetus and placenta of GDM mice increased (P
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- 2024
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29. The basal forebrain to lateral habenula circuitry mediates social behavioral maladaptation
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Jun Wang, Qian Yang, Xue Liu, Jie Li, Ya-Lan Wen, Yuzheng Hu, Tian-Le Xu, Shumin Duan, and Han Xu
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Science - Abstract
Abstract Elucidating the neural basis of fear allows for more effective treatments for maladaptive fear often observed in psychiatric disorders. Although the basal forebrain (BF) has an essential role in fear learning, its function in fear expression and the underlying neuronal and circuit substrates are much less understood. Here we report that BF glutamatergic neurons are robustly activated by social stimulus following social fear conditioning in male mice. And cell-type-specific inhibition of those excitatory neurons largely reduces social fear expression. At the circuit level, BF glutamatergic neurons make functional contacts with the lateral habenula (LHb) neurons and these connections are potentiated in conditioned mice. Moreover, optogenetic inhibition of BF-LHb glutamatergic pathway significantly reduces social fear responses. These data unravel an important function of the BF in fear expression via its glutamatergic projection onto the LHb, and suggest that selective targeting BF-LHb excitatory circuitry could alleviate maladaptive fear in relevant disorders.
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- 2024
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30. Whole-brain connections of glutamatergic neurons in the mouse lateral habenula in both sexes
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Hongren Huang, Xue Liu, Liping Wang, and Feng Wang
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Lateral habenula ,Glutamatergic neuron ,Sex differences ,Connectivity map ,Medicine ,Physiology ,QP1-981 - Abstract
Abstract Background The lateral habenula (LHb) is an epithalamus nucleus that is evolutionarily conserved and involved in various physiological functions, such as encoding value signals, integrating emotional information, and regulating related behaviors. The cells in the LHb are predominantly glutamatergic and have heterogeneous functions in response to different stimuli. The circuitry connections of the LHb glutamatergic neurons play a crucial role in integrating a wide range of events. However, the circuitry connections of LHb glutamatergic neurons in both sexes have not been thoroughly investigated. Methods In this study, we injected Cre-dependent retrograde trace virus and anterograde synaptophysin-labeling virus into the LHb of adult male and female Vglut2-ires-Cre mice, respectively. We then quantitatively analyzed the input and output of the LHb glutamatergic connections in both the ipsilateral and contralateral whole brain. Results Our findings showed that the inputs to LHbvGlut2 neurons come from more than 30 brain subregions, including the cortex, striatum, pallidum, thalamus, hypothalamus, midbrain, pons, medulla, and cerebellum with no significant differences between males and females. The outputs of LHbvGlut2 neurons targeted eight large brain regions, primarily focusing on the midbrain and pons nuclei, with distinct features in presynaptic bouton across different brain subregions. While correlation and cluster analysis revealed differences in input and collateral projection features, the input-output connection pattern of LHbvGlut2 neurons in both sexes was highly similar. Conclusions This study provides a systematic and comprehensive analysis of the input and output connections of LHbvGlut2 neurons in male and female mice, shedding light on the anatomical architecture of these specific cell types in the mouse LHb. This structural understanding can help guide further investigations into the complex functions of the LHb.
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- 2024
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31. Mendelian randomisation highlights type 1 diabetes as a causal determinant of idiopathic pulmonary fibrosis
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Xinlai Ma, Yang Zhang, Fan Wu, Xue Liu, and Wei Zhang
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Type 1 diabetes ,Idiopathic pulmonary fibrosis ,Mendelian randomization ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Abstract Background It is unclear whether type 1 diabetes (T1D) causes idiopathic pulmonary fibrosis (IPF), despite observational research linking the two conditions. Therefore, our study aimed to examine the causal link between T1D and the likelihood of IPF by employing the Mendelian randomization (MR) technique of two-sample Mendelian randomization. Methods Using data from two genome-wide association studies (GWAS) with European ancestry, we performed a two-sample MR analysis. These studies involved 18,856 individuals (6,683 cases and 12,173 controls) for T1D and 198,014 individuals (10,028 cases and 196,986 controls) for IPF. We utilized inverse-variance weighted (IVW) analysis as our main approach to determine the association between the risk of IPF and T1D. To evaluate multidirectionality, the MR-Egger regression test was utilized, whereas heterogeneity was assessed using Cochran’s Q test. Additionally, a leave-one-out analysis was performed to assess the reliability of the results. Results 38 SNPs linked to T1D were employed as instrumental variables (IVs). Multiple MR methods yielded consistent results, and the MR analysis reveals a significant and positive causal impact of T1D on IPF (MR-IVW, odds ratio [OR] = 1.128, 95% confidence interval [CI] 1.034–1.230; P = 0.006). The limitations of the study include the lack of data from non-European groups and the inability to rule out the possibility of small links. Larger MR experiments are necessary to investigate minute impacts. Conclusions The results of this study provide evidence that T1D contributes to the onset and advancement of IPF. This finding may provide important insights into the cause of IPF and possible treatments in the future.
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- 2024
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32. A prognostic model of idiopathic pulmonary fibrosis constructed based on macrophage and mitochondria-related genes
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Yu Bao, Shiyuan Yang, Hailan Zhao, Yezhen Wang, Ke Li, Xue Liu, Wei Zhang, and Xue Zhu
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Mitochondria ,Macrophage ,Idiopathic pulmonary fibrosis ,Key genes ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Studies have shown that mitochondrial function and macrophages may play a role in the development of idiopathic pulmonary fibrosis (IPF). However, the understanding of the interactions and specific mechanisms between mitochondrial function and macrophages in pulmonary fibrosis is still very limited. Methods To construct a prognostic model for IPF based on Macrophage- related genes (MaRGs) and Mitochondria-related genes (MitoRGs), differential analysis was performed to achieve differentially expressed genes (DEGs) between IPF and Control groups in the GSE28042 dataset. Then, MitoRGs, MaRGs and DEGs were overlapped to screen out the signature genes. The univariate Cox analysis and the least absolute shrinkage and selection operator (LASSO) algorithm were implemented to achieve key genes. Furthermore, the independent prognostic analysis was employed. The ingenuity pathway analysis (IPA) was employed to further understand the molecular mechanisms of key genes.Next, the immune infiltration analysis was implemented to identify differential immune cells between two risk subgroups. Results There were 4791 DEGs between IPF and Control groups. Furthermore, 26 signature genes were achieved by the intersection processing. Three key genes including ALDH2, MCL1, and BCL2A1 were achieved, and the risk model based on the key genes was created. In addition, a nomogram for survival forecasting of IPF patients was created based on riskScore, Age, and Gender, and we found that key genes were associated with classical pathways including ‘Apoptosis Signaling’, ‘PI3K/AKT Signaling’, and so on. Next, two differential immune cells including Monocytes and CD8 T cells were identified between two risk subgroups. Moreover, we found that MIR29B2CHG and hsa-mir-1-3p could regulate the expression of ALDH2. Conclusion We achieved 3 key genes including ALDH2, MCL1,, and BCL2A1 associated with IPF, providing a new theoretical basis for clinical treatment of IPF.
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- 2024
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33. Excessive fat expenditure in MCT-induced heart failure rats is associated with BMAL1/REV-ERBα circadian rhythmic loop disruption
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Dufang Ma, Yiwei Qu, Tao Wu, Xue Liu, Lu Cai, and Yong Wang
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Heart failure ,Cardiac cachexia ,Fat expenditure ,Circadian clock ,BMAL1/REV-ERBα circadian rhythmic loop ,White adipose lipolysis ,Medicine ,Science - Abstract
Abstract Fat loss predicts adverse outcomes in advanced heart failure (HF). Disrupted circadian clocks are a primary cause of lipid metabolic issues, but it's unclear if this disruption affects fat expenditure in HF. To address this issue, we investigated the effects of disruption of the BMAL1/REV-ERBα circadian rhythmic loop on adipose tissue metabolism in HF.50 Wistar rats were initially divided into control (n = 10) and model (n = 40) groups. The model rats were induced with HF via monocrotaline (MCT) injections, while the control group received equivalent solvent injections. After establishing the HF model, the model group was further subdivided into four groups: normal rhythm (LD), inverted rhythm (DL), lentivirus vector carrying Bmal1 short hairpin RNA (LV-Bmal1 shRNA), and empty lentivirus vector control (LV-Control shRNA) groups, each with 10 rats. The DL subgroup was exposed to a reversed light–dark cycle of 8 h: 16 h (dark: light), while the rest adhered to normal light–dark conditions (light: dark 12 h: 12 h). Histological analyses were conducted using H&E, Oil Red O, and Picrosirius red stains to examine adipose and liver tissues. Immunohistochemical staining, RT-qPCR, and Western blotting were performed to detect markers of lipolysis, lipogenesis, and beiging of white adipose tissue (WAT), while thermogenesis indicators were detected in brown adipose tissue (BAT). The LD group rats exhibited decreased levels of BMAL1 protein, increased levels of REV-ERBα protein, and disrupted circadian circuits in adipose tissue compared to controls. Additionally, HF rats showed reduced adipose mass and increased ectopic lipid deposition, along with smaller adipocytes containing lower lipid content and fibrotic adipose tissue. In the LD group WAT, expression of ATGL, HSL, PKA, and p-PKA proteins increased, alongside elevated mRNA levels of lipase genes (Hsl, Atgl, Peripilin) and FFA β-oxidation genes (Cpt1, acyl-CoA). Conversely, lipogenic gene expression (Scd1, Fas, Mgat, Dgat2) decreased, while beige adipocyte markers (Cd137, Tbx-1, Ucp-1, Zic-1) and UCP-1 protein expression increased. In BAT, HF rats exhibited elevated levels of PKA, p-PKA, and UCP-1 proteins, along with increased expression of thermogenic genes (Ucp-1, Pparγ, Pgc-1α) and lipid transportation genes (Cd36, Fatp-1, Cpt-1). Plasma NT-proBNP levels were higher in LD rats, accompanied by elevated NE and IL-6 levels in adipose tissue. Remarkably, morphologically, the adipocytes in the DL and LV-Bmal1 shRNA groups showed reduced size and lower lipid content, while lipid deposition in the liver was more pronounced in these groups compared to the LD group. At the gene/protein level, the BMAL1/REV-ERBα circadian loop exhibited severe disruption in LV-Bmal1 shRNA rats compared to LD rats. Additionally, there was increased expression of lipase genes, FFA β oxidation genes, and beige adipocyte markers in WAT, as well as higher expression of thermogenic genes and lipid transportation genes in BAT. Furthermore, plasma NT-proBNP levels and adipose tissue levels of NE and IL-6 were elevated in LV-Bmal1 shRNA rats compared with LD rats. The present study demonstrates that disruption of the BMAL1/REV-ERBα circadian rhythmic loop is associated with fat expenditure in HF. This result suggests that restoring circadian rhythms in adipose tissue may help counteract disorders of adipose metabolism and reduce fat loss in HF.
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- 2024
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34. Engagement of N6-methyladenisine methylation of Gng4 mRNA in astrocyte dysfunction regulated by CircHECW2
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Ying Bai, Di Chang, Hui Ren, Minzi Ju, Yu Wang, Biling Chen, Han Li, Xue Liu, Daxing Li, Xinchen Huo, Xiaofei Guo, Mengze Tong, Ying Tan, Honghong Yao, and Bing Han
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N6-Methyladenosine ,Depression ,circHECW2 ,Astrocyte ,WTAP ,Ubiquitination ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The N6-methyladenosine (m6A) modification is the most prevalent modification of eukaryotic mRNAs and plays a crucial role in various physiological processes by regulating the stability or function of target mRNAs. Accumulating evidence has suggested that m6A methylation may be involved in the pathological process of major depressive disorder (MDD), a common neuropsychiatric disorder with an unclear aetiology. Here, we found that the levels of the circular RNA HECW2 (circHECW2) were significantly increased in the plasma of both MDD patients and the chronic unpredictable stress (CUS) mouse model. Notably, the downregulation of circHECW2 attenuated astrocyte dysfunction and depression-like behaviors induced by CUS. Furthermore, we demonstrated that the downregulation of circHECW2 increased the expression of the methylase WTAP, leading to an increase in Gng4 expression via m6A modifications. Our findings provide functional insight into the correlation between circHECW2 and m6A methylation, suggesting that circHECW2 may represent a potential target for MDD treatment.
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- 2024
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35. Do Dynamic Signals Affect High-Quality Solvers’ Participation Behavior? Evidence from the Crowdsourcing Platform
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Xue Liu and Xiaoling Hao
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crowdsourcing platform ,high-quality solvers ,signaling theory ,quality signals ,intention signals ,Business ,HF5001-6182 - Abstract
The emergence of the crowdsourcing platform enables seekers to obtain higher-quality services at lower costs. High-quality services are often provided by high-quality solvers, which is the key to the sustainable development of crowdsourcing platforms. Therefore, how to attract more high-quality solvers to participate needs to be focused on. Most previous studies that used stock data to measure crowdsourcing performance failed to describe the contest process of high-quality solvers’ behavior. Different from the previous study, this paper explores the information signals that influence the participation of high-quality solvers in the dynamic process of crowdsourcing contests. Based on the creative projects of the Winvk platform, dynamic models affecting the participation of high-quality solvers are constructed from the perspective of reducing information asymmetry, and the effects of quality signals and intention signals are explored in depth. The results show that for logo design projects, clear information display and monetary mechanisms have a significant impact on alleviating information asymmetry and attracting the participation of high-quality solvers. Interestingly, the effect of market competition on high-quality solvers shows a U-shaped change. The research results provide a reference for enterprises to reduce information asymmetry, obtain high-quality solutions, and enrich the theoretical application in the field of crowdsourcing.
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- 2024
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36. OsmiR319-OsPCF5 modulate resistance to brown planthopper in rice through association with MYB proteins
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Bo Sun, Yanjie Shen, Lin Zhu, Xiaofang Yang, Xue Liu, Dayong Li, Mulan Zhu, Xuexia Miao, and Zhenying Shi
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OsmiR319 ,Brown planthopper ,TCP ,MYB ,Resistance ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background The brown planthopper (BPH) is a kind of piercing-sucking insect specific to rice, with the damage tops the list of pathogens and insects in recent years. microRNAs (miRNAs) are pivotal regulators of plant–environment interactions, while the mechanism underlying their function against insects is largely unknown. Results Here, we confirmed that OsmiR319, an ancient and conserved miRNA, negatively regulated resistance to BPHs, with overexpression of OsmiR319 susceptible to BPH, while suppression of OsmiR319 resistant to BPH in comparison with wild type. Meanwhile, we identified several targets of OsmiR319 that may mediate BPH resistance. Among them, OsPCF5 was the most obviously induced by BPH feeding, and over expression of OsPCF5 was resistance to BPH. In addition, various biochemical assays verified that OsPCF5 interacted with several MYB proteins, such as OsMYB22, OsMYB30, and OsMYB30C.Genetically, we revealed that both OsMYB22 and OsMYB30C positively regulated BPH resistance. Genetic interaction analyses confirmed that OsMYB22 and OsMYB30C both function in the same genetic pathway with OsmiR319b to mediate BPH resistance. Conclusions Altogether, we revealed that OsPCF5 regulates BPH resistance via association with several MYB proteins downstream of OsmiR319, these MYB proteins might function as regulators of BPH resistance through regulating the phenylpropane synthesis.
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- 2024
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37. Amide proton transfer-weighted imaging and stretch-exponential model DWI based 18F-FDG PET/MRI for differentiation of benign and malignant solitary pulmonary lesions
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Nan Meng, Chen Song, Jing Sun, Xue Liu, Lei Shen, Yihang Zhou, Bo Dai, Xuan Yu, Yaping Wu, Jianmin Yuan, Yang Yang, Zhe Wang, and Meiyun Wang
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Lung diseases ,Diffusion magnetic resonance imaging ,Positron-emission tomography ,Fluorodeoxyglucose F18 ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Objectives To differentiate benign and malignant solitary pulmonary lesions (SPLs) by amide proton transfer-weighted imaging (APTWI), mono-exponential model DWI (MEM-DWI), stretched exponential model DWI (SEM-DWI), and 18F-FDG PET-derived parameters. Methods A total of 120 SPLs patients underwent chest 18F-FDG PET/MRI were enrolled, including 84 in the training set (28 benign and 56 malignant) and 36 in the test set (13 benign and 23 malignant). MTRasym(3.5 ppm), ADC, DDC, α, SUVmax, MTV, and TLG were compared. The area under receiver-operator characteristic curve (AUC) was used to assess diagnostic efficacy. The Logistic regression analysis was used to identify independent predictors and establish prediction model. Results SUVmax, MTV, TLG, α, and MTRasym(3.5 ppm) values were significantly lower and ADC, DDC values were significantly higher in benign SPLs than malignant SPLs (all P
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- 2024
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38. MOF‐derived 1D/3D N‐doped porous carbon for spatially confined electrochemical CO2 reduction to adjustable syngas
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Wei Zhang, Hui Li, Daming Feng, Chenglin Wu, Chenghua Sun, Baohua Jia, Xue Liu, and Tianyi Ma
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electrochemical CO2 reduction reaction ,melamine sponge ,metal‐organic frameworks ,porous carbon ,syngas ,Production of electric energy or power. Powerplants. Central stations ,TK1001-1841 - Abstract
Abstract Electrochemical reduction of CO2 to syngas (CO and H2) offers an efficient way to mitigate carbon emissions and store intermittent renewable energy in chemicals. Herein, the hierarchical one‐dimensional/three‐dimensional nitrogen‐doped porous carbon (1D/3D NPC) is prepared by carbonizing the composite of Zn‐MOF‐74 crystals in situ grown on a commercial melamine sponge (MS), for electrochemical CO2 reduction reaction (CO2RR). The 1D/3D NPC exhibits a high CO/H2 ratio (5.06) and CO yield (31 mmol g−1 h−1) at −0.55 V, which are 13.7 times and 21.4 times those of 1D porous carbon (derived from Zn‐MOF‐74) and N‐doped carbon (carbonized by MS), respectively. This is attributed to the unique spatial environment of 1D/3D NPC, which increases the adsorption capacity of CO2 and promotes electron transfer from the 3D N‐doped carbon framework to 1D carbon, improving the reaction kinetics of CO2RR. Experimental results and charge density difference plots indicate that the active site of CO2RR is the positively charged carbon atom adjacent to graphitic N on 1D carbon and the active site of HER is the pyridinic N on 1D carbon. The presence of pyridinic N and pyrrolic N reduces the number of electron transfer, decreasing the reaction kinetics and the activity of CO2RR. The CO/H2 ratio is related to the distribution of N species and the specific surface area, which are determined by the degree of spatial confinement effect. The CO/H2 ratios can be regulated by adjusting the carbonization temperature to adjust the degree of spatial confinement effect. Given the low cost of feedstock and easy strategy, 1D/3D NPC catalysts have great potential for industrial application.
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- 2024
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39. Preoperative bedside test indicators as predictors of difficult video laryngoscopy in obese patients: a prospective observational study
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Liumei Li, Guanyu Yang, ShiYing Li, Xue Liu, Ya Fei Zhu, and Qinjun Chu
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Difficult video laryngoscopy ,Body mass index ,Cormack-Lehane ,Obese ,Mallampati grade ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Purpose The aim of this study was to identify factors associated with difficult video laryngoscopy in obese patients. Methods A total of 579 obese patients undergoing elective laparoscopic weight loss surgery were intubated with a single-lumen endotracheal tube using a video laryngoscopy under general anesthesia, and the patients were divided into two groups based on the Cormack-Lehane classification (difficult video laryngoscopy defined as ≥ 3): the easy video laryngoscopy group and the difficult video laryngoscopy group. Record the general condition of the patient, bedside testing indicators related to the airway, Cormack-Lehane classification during intubation, and intubation failure rate. Results The findings of this study show that the incidence of difficult video laryngoscopy in obese patients is 4.8%. Multivariate logistic regression analysis indicated that body mass index was significantly associated with difficult video laryngoscopy (OR = 1.082, 95% CI [1.033–1.132], P
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- 2024
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40. The anomalous Hall effect in the epitaxial-grown semiconducting CuCo2O4 thin film
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Xianghao Ji, Biao Zheng, Mingzhu Xue, Xue Liu, Wenshuai Gao, Mingliang Tian, and Xuegang Chen
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Physics ,QC1-999 - Abstract
The high-quality inverse spinel CuCo2O4 thin films are epitaxially grown on (001) MgAl2O4 substrates by radio frequency magnetron sputtering. The electrical transport properties exhibit typical semiconducting characteristics, accompanying the enhancement of resistivity with the thinning of CuCo2O4 thickness. The transport properties could be well understood by the Mott variable range hopping model. The anomalous Hall effect with a clear hysteresis loop is observed below 100 K, indicating the existence of out-of-plane magnetization in the epitaxial-grown CuCo2O4 films. In addition, the negative magnetoresistance at low temperature reverses to the positive magnetoresistance (≥100 K), which is related to the changes from the decrease in spin/carrier scattering under the magnetic field at low temperature to the enhancement of carrier deflection due to the conventional Lorenz force (≥100 K). The observed physical properties are closely related to the orbital occupation of Cu ion in CuCo2O4 films, which is a significant difference compared to that of documented metallic NiCo2O4. This work is a good comprehensive study of inverse spinel oxide thin films.
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- 2024
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41. How Do Climate Model Resolution and Atmospheric Moisture Affect the Simulation of Unprecedented Extreme Events Like the 2021 Western North American Heat Wave?
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Xue Liu, Ramalingam Saravanan, Dan Fu, Ping Chang, Christina M. Patricola, and Travis A. O’Brien
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Geophysics. Cosmic physics ,QC801-809 - Abstract
Abstract Although the 2021 Western North America (WNA) heat wave was predicted by weather forecast models, questions remain about whether such strong events can be simulated by global climate models (GCMs) at different model resolutions. Here, we analyze sets of GCM simulations including historical and future periods to check for the occurrence of similar events. High‐ and low‐resolution simulations both encounter challenges in reproducing events as extreme as the observed one, particularly under the present climate. Relatively stronger amplitudes are observed during the future periods. Furthermore, high‐ and low‐resolution short initialized GCM simulations are both able to reasonably predict such strong events and their associated high‐pressure ridge over the WNA with a 1 week forecast lead time. Moisture sensitivity experiments further indicate a drier atmospheric moisture condition results in substantially higher near‐surface temperatures in the simulated heat events.
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- 2024
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42. Comparative analysis of the mitochondrial genomes of four Dendrobium species (Orchidaceae) reveals heterogeneity in structure, synteny, intercellular gene transfer, and RNA editing
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Le Wang, Xue Liu, Yongde Wang, Xingjia Ming, Junsheng Qi, and Yiquan Zhou
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Dendrobium species ,mitochondrial genome ,chloroplast genome ,homologous sequence ,RNA editing ,Plant culture ,SB1-1110 - Abstract
The genus Dendrobium, part of the Orchidaceae family, encompasses species of significant medicinal, nutritional, and economic value. However, many Dendrobium species are threatened by environmental stresses, low seed germination rates, and overharvesting. Mitochondria generate the energy necessary for various plant life activities. Despite their importance, research on the mitochondrial genomes of Dendrobium species is currently limited. To address this gap, we performed a comprehensive genetic analysis of four Dendrobium species—D. flexicaule, D. nobile, D. officinale, and D. huoshanense—focusing on their mitochondrial and chloroplast genomes to elucidate their genetic architecture and support conservation efforts. We utilized advanced sequencing technologies, including Illumina for high-throughput sequencing and Nanopore for long-read sequencing capabilities. Our findings revealed the multichromosomal mitochondrial genome structures, with total lengths ranging from 596,506 bp to 772,523 bp. The mitochondrial genomes contained 265 functional genes, including 64-69 protein-coding genes, 23-28 tRNA genes, and 3 rRNA genes. We identified 647 simple sequence repeats (SSRs) and 352 tandem repeats, along with 440 instances of plastid-to-mitochondrial gene transfer. Additionally, we predicted 2,023 RNA editing sites within the mitochondrial protein-coding genes, predominantly characterized by cytosine-to-thymine transitions. Comparative analysis of mitochondrial DNA across the species highlighted 25 conserved genes, with evidence of positive selection in five genes: ccmFC, matR, mttB, rps2, and rps10. Phylogenetic assessments suggested a close sister relationship between D. nobile and D. huoshanense, and a similar proximity between D. officinale and D. flexicaule. This comprehensive genomic study provides a critical foundation for further exploration into the genetic mechanisms and biodiversity of Dendrobium species, contributing valuable insights for their conservation and sustainable utilization.
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- 2024
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43. Genome-wide CRISPRi screens for high-throughput fitness quantification and identification of determinants for dalbavancin susceptibility in Staphylococcus aureus
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Xue Liu, Vincent de Bakker, Maria Victoria Heggenhougen, Marita Torrissen Mårli, Anette Heidal Frøynes, Zhian Salehian, Davide Porcellato, Danae Morales Angeles, Jan-Willem Veening, and Morten Kjos
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CRISPR interference ,Staphylococcus aureus ,genetic screen ,antibiotic resistance ,Microbiology ,QR1-502 - Abstract
ABSTRACT Antibiotic resistance and tolerance remain a major problem for the treatment of staphylococcal infections. Identifying genes that influence antibiotic susceptibility could open the door to novel antimicrobial strategies, including targets for new synergistic drug combinations. Here, we developed a genome-wide CRISPR interference library for Staphylococcus aureus, demonstrated its use by quantifying gene fitness in different strains through CRISPRi-seq, and used it to identify genes that modulate susceptibility to the lipoglycopeptide dalbavancin. By exposing the library to sublethal concentrations of dalbavancin using both CRISPRi-seq and direct selection methods, we not only found genes previously reported to be involved in antibiotic susceptibility but also identified genes thus far unknown to affect antibiotic tolerance. Importantly, some of these genes could not have been detected by more conventional transposon-based knockout approaches because they are essential for growth, stressing the complementary value of CRISPRi-based methods. Notably, knockdown of a gene encoding the uncharacterized protein KapB specifically sensitizes the cells to dalbavancin, but not to other antibiotics of the same class, whereas knockdown of the Shikimate pathway showed the opposite effect. The results presented here demonstrate the promise of CRISPRi-seq screens to identify genes and pathways involved in antibiotic susceptibility and pave the way to explore alternative antimicrobial treatments through these insights.IMPORTANCEAntibiotic resistance is a challenge for treating staphylococcal infections. Identifying genes that affect how antibiotics work could help create new treatments. In our study, we made a CRISPR interference library for Staphylococcus aureus and used this to find which genes are critical for growth and also mapped genes that are important for antibiotic sensitivity, focusing on the lipoglycopeptide antibiotic dalbavancin. With this method, we identified genes that altered the sensitivity to dalbavancin upon knockdown, including genes involved in different cellular functions. CRISPRi-seq offers a means to uncover untapped antibiotic targets, including those that conventional screens would disregard due to their essentiality. This paves the way for the discovery of new ways to fight infections.
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- 2024
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44. The proliferating cell nuclear antigen gene (pcna) plays a key role in ovarian development in the ridgetail white prawn, Exopalaemon carinicauda
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Songsong Hua, Wanying Li, Duwei Zheng, Xinyu Zhou, Sichen Zhang, Huimin Zhang, Xue Liu, Wazir Ali Baloch, Binlun Yan, and Huan Gao
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Exopalaemon carinicauda ,pcna ,RNAi ,Immunohistochemistry ,Flow cytometry ,Aquaculture. Fisheries. Angling ,SH1-691 - Abstract
The ridgetail white prawn, Exopalaemon carinicauda, has advantages in its rapid growth and strong environmental adaptability, and it is a good species for the biological research of crustaceans. To explore the function of the pcna gene in the ovarian development of crustaceans, we cloned the pcna (Ec-pcna) from E. carinicauda. The open reading frame of the pcna is 786 bp, and it encodes a total of 261 aa. A PCNA/RFC (replication factor C) domain exists at 208–254 aa, and according to a phylogenetic analysis, the amino acid sequence of Ec-pcna has the highest similarity with the pcna gene from Litopenaeus vannamei, and it is clustered into one branch with L. vannamei and Penaeus monodon. The results of qRT-PCR showed that the expression of pcna was highest in the ovarian tissue of E. carinicauda, and it was significantly higher than that of other tissues (p
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- 2024
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45. Broadband and polarization sensitive quasi-1D Nb2Pd3Se8 photodetector
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Cong Wang, Kunpeng Wang, Keyu Wen, Libo Zhang, Xue Liu, Xiangde Zhu, Mingliang Tian, Jun-Lei Wang, and Xuegang Chen
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Physics ,QC1-999 - Abstract
High-performance photodetectors (PDs) find potential applications in extensive areas such as self-driving vehicles, resource monitoring, imaging, communication, etc. However, low sensitivity, slow response speed, and poor air stability have limited their application. In this work, we construct an air stable one-dimensional ternary transition metal chalcogenide Nb2Pd3Se8-based PD that has high sensitivity and fast response and is polarization-sensitive. The Nb2Pd3Se8 nanowire-based PD shows a maximum responsivity of 47 A W−1, a detectivity of 3.28 × 1011 Jones, and a response time of 50–65 µs under 520 nm laser illumination. In addition, the 1D PD shows polarization-sensitivity with a 0.47 anisotropic ratio. This performance paves way to construct robust air stable PDs with high detectivity and high responsivity using one-dimensional Nb2Pd3Se8-based nanostructures.
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- 2024
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46. The interference of anti-TSH autoantibody on clinical TSH detection
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Mulin Tang, Xue Meng, Jiajia Ni, Xue Liu, Xinhui Wang, Yuchen Li, Yuwei Chai, Chunjia Kou, Li Zhang, and Haiqing Zhang
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anti-TSH autoantibody (TSH-Ab) ,TSH ,immunoassay interference ,radioimmunoprecipitation ,PEG precipitation ,macro-TSH(M-TSH) ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
ObjectiveIt is well known that macro-thyroid-stimulating hormone (macro-TSH) could interfere with the detection of TSH. The anti-TSH autoantibody is an essential component of macro-TSH. However, the epidemiological characteristics and the clinical interference of the anti-TSH autoantibody are unclear.MethodsIn this study, the radioimmunoprecipitation technique was used to detect the anti-TSH autoantibody. Platforms with different detection mechanisms were applied to measure the TSH in patients with the anti-TSH autoantibody. Polyethylene glycol (PEG) precipitation was used to determine the immunoassay interference.ResultsThe prevalence of the anti-TSH autoantibody in patients with mild subclinical hypothyroidism (SCH) and autoimmune thyroiditis, but normal thyroid function, was 4.78%. All 10 patients with anti-TSH antibodies had autoimmune diseases, with five of them having significant clinical test interference.ConclusionThe appearance of the anti-TSH antibody is not associated with thyroid autoantibodies. The presence of the anti-TSH autoantibody can interfere with the detection of TSH and can affect clinical diagnosis and treatment.
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- 2024
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47. Executive compensation and corporate sustainability: Evidence from ESG ratings
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Chen Zhu, Xue Liu, Dong Chen, and Yuanyuan Yue
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Compensation incentives ,Corporate ESG ratings ,Sustainable development ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Selecting A-share listed companies in Shanghai and Shenzhen, China, during the period of 2012–2021 as research subjects, this study examines the relationship and operational mechanisms between executive compensation and corporate ESG Ratings. It is found that executive compensation incentives can significantly enhance corporate ESG Ratings. This effect is achieved through promoting green innovation efficiency, enhancing environmental information disclosure, and improving financial performance. However, this positive impact weakens with an increase in management shareholding, but strengthens with a higher proportion of independent directors. When compensation exceeds appropriate levels, overcompensation leads to a decline in ESG Ratings. The significance of this study lies in revealing potential pathways for enhancing corporate sustainability through executive compensation incentives, while also emphasizing the importance of formulating appropriate compensation strategies.
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- 2024
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48. The function of CozE proteins is linked to lipoteichoic acid biosynthesis in Staphylococcus aureus
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Maria Disen Barbuti, Elisabeth Lambert, Ine Storaker Myrbråten, Adrien Ducret, Gro Anita Stamsås, Linus Wilhelm, Xue Liu, Zhian Salehian, Jan-Willem Veening, Daniel Straume, Christophe Grangeasse, Camilo Perez, and Morten Kjos
- Subjects
teichoic acids ,cell division ,membrane homeostasis ,membrane proteins ,Microbiology ,QR1-502 - Abstract
ABSTRACT Coordinated membrane and cell wall synthesis is vital for maintaining cell integrity and facilitating cell division in bacteria. However, the molecular mechanisms that underpin such coordination are poorly understood. Here we uncover the pivotal roles of the staphylococcal proteins CozEa and CozEb, members of a conserved family of membrane proteins previously implicated in bacterial cell division, in the biosynthesis of lipoteichoic acids (LTA) and maintenance of membrane homeostasis in Staphylococcus aureus. We establish that there is a synthetic lethal relationship between CozE and UgtP, the enzyme synthesizing the LTA glycolipid anchor Glc2DAG. By contrast, in cells lacking LtaA, the flippase of Glc2DAG, the essentiality of CozE proteins was alleviated, suggesting that the function of CozE proteins is linked to the synthesis and flipping of the glycolipid anchor. CozE proteins were indeed found to modulate the flipping activity of LtaA in vitro. Furthermore, CozEb was shown to control LTA polymer length and stability. Together, these findings establish CozE proteins as novel players in membrane homeostasis and LTA biosynthesis in S. aureus.IMPORTANCELipoteichoic acids are major constituents of the cell wall of Gram-positive bacteria. These anionic polymers are important virulence factors and modulators of antibiotic susceptibility in the important pathogen Staphylococcus aureus. They are also critical for maintaining cell integrity and facilitating proper cell division. In this work, we discover that a family of membrane proteins named CozE is involved in the biosynthesis of lipoteichoic acids (LTAs) in S. aureus. CozE proteins have previously been shown to affect bacterial cell division, but we here show that these proteins affect LTA length and stability, as well as the flipping of glycolipids between membrane leaflets. This new mechanism of LTA control may thus have implications for the virulence and antibiotic susceptibility of S. aureus.
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- 2024
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49. A Novel Coral Reef Classification Method Combining Radiative Transfer Model With Deep Learning
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Bo Ai, Xue Liu, Zhen Wen, Lei Wang, Huadong Ma, and Guannan Lv
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Coral reefs ,depth learning ,radiative transfer ,water column ,water depth ,Ocean engineering ,TC1501-1800 ,Geophysics. Cosmic physics ,QC801-809 - Abstract
Coral reef ecosystem is gradually being threatened, thus monitoring coral reefs using remote sensing is of great significance. There are difficulties in identifying and classifying coral reefs. We propose a radiative transfer model with deep learning (RTDL) to improve the accuracy of the coral reef classification. This model combines the radiative transfer theory with deep learning methods to consider the nonlinear fitting ability of the model and the constraints of the physical model, which improves the classification accuracy. This model utilizes ICESat-2 data to obtain the underwater topography photons (UTP) by active contours with variable convolution kernel model and retrieves water depth by combining the UTP with the Sentinel-2 images. An exponential model is used for reinforcing the reflectivity of the seabed features, which is executed by deep learning models. This study uses multidimensional and multitemporal images to illustrate the generalization and robustness of the RTDL model compared with other methods. The result indicates that the RTDL model obtains remarkable achievements in the classification of coral reef landforms. The method increases the accuracy by 5%, mean intersection over union by 13%, especially for areas, such as reef front slopes and lagoons, where the identification accuracy is increased by 26% for the reef front slopes, by 15% for sandbars, and by 9% for lagoons, compared with the traditional method across 14 areas. The model provides a stable classification framework with physically meaningful for identifying coral reef areas, providing robust method support for the conservation of their ecosystems.
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- 2024
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50. Temporal dendritic heterogeneity incorporated with spiking neural networks for learning multi-timescale dynamics
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Hanle Zheng, Zhong Zheng, Rui Hu, Bo Xiao, Yujie Wu, Fangwen Yu, Xue Liu, Guoqi Li, and Lei Deng
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Science - Abstract
Abstract It is widely believed the brain-inspired spiking neural networks have the capability of processing temporal information owing to their dynamic attributes. However, how to understand what kind of mechanisms contributing to the learning ability and exploit the rich dynamic properties of spiking neural networks to satisfactorily solve complex temporal computing tasks in practice still remains to be explored. In this article, we identify the importance of capturing the multi-timescale components, based on which a multi-compartment spiking neural model with temporal dendritic heterogeneity, is proposed. The model enables multi-timescale dynamics by automatically learning heterogeneous timing factors on different dendritic branches. Two breakthroughs are made through extensive experiments: the working mechanism of the proposed model is revealed via an elaborated temporal spiking XOR problem to analyze the temporal feature integration at different levels; comprehensive performance benefits of the model over ordinary spiking neural networks are achieved on several temporal computing benchmarks for speech recognition, visual recognition, electroencephalogram signal recognition, and robot place recognition, which shows the best-reported accuracy and model compactness, promising robustness and generalization, and high execution efficiency on neuromorphic hardware. This work moves neuromorphic computing a significant step toward real-world applications by appropriately exploiting biological observations.
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- 2024
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