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Objectives: To investigate the utility of deep learning (DL) automated segmentation-based MRI radiomic features and clinical-radiological characteristics in predicting early recurrence after curative resection of single hepatocellular carcinoma (HCC). Methods: This single-center, retrospective study included consecutive patients with surgically proven HCC who underwent contrast-enhanced MRI before curative hepatectomy from December 2009 to December 2021. Using 3D U-net-based DL algorithms, automated segmentation of the liver and HCC was performed on six MRI sequences. Radiomic features were extracted from the tumor, tumor border extensions (5 mm, 10 mm, and 20 mm), and the liver. A hybrid model incorporating the optimal radiomic signature and preoperative clinical-radiological characteristics was constructed via Cox regression analyses for early recurrence. Model discrimination was characterized with C-index and time-dependent area under the receiver operating curve (tdAUC) and compared with the widely-adopted BCLC and CNLC staging systems. Results: Four hundred and thirty-four patients (median age, 52.0 years; 376 men) were included. Among all radiomic signatures, HCC with5 mmtumorborderextensionandliver showed the optimal predictive performance (training set C-index, 0.696). By incorporating this radiomic signature, rim arterial phase hyperenhancement (APHE), and incomplete tumor "capsule," a hybrid model demonstrated a validation set C-index of 0.706 and superior 2-year tdAUC (0.743) than both the BCLC (0.550; p < 0.001) and CNLC (0.635; p = 0.032) systems. This model stratified patients into two prognostically distinct risk strata (both datasets p < 0.001). Conclusion: A preoperative imaging model incorporating the DL automated segmentation-based radiomic signature with rim APHE and incomplete tumor "capsule" accurately predicted early postsurgical recurrence of a single HCC. Critical relevance statement: The DL automated segmentation-based MRI radiomic model with rim APHE and incomplete tumor "capsule" hold the potential to facilitate individualized risk estimation of postsurgical early recurrence in a single HCC. Key Points: A hybrid model integrating MRI radiomic signature was constructed for early recurrence prediction of HCC. The hybrid model demonstrated superior 2-year AUC than the BCLC and CNLC systems. The model categorized the low-risk HCC group carried longer RFS. [ABSTRACT FROM AUTHOR]

Deltamethrin (Del), a widely administered pyrethroid insecticide, has been established as a common contaminant of the freshwater environment and detected in many freshwater ecosystems. In this study, we investigated the changes in brain transcriptome and metabolome of crucian carp after exposure to 0.6 μg/L Del for 28 days. Elevated MDA levels and inhibition of SOD activity indicate damage to the antioxidant system. Moreover, a total of 70 differential metabolites (DMs) were identified using the liquid chromatography‐mass spectrometry, including 32 upregulated and 38 downregulated DMs in the Del‐exposed group. The DMs associated with chronic Del exposure were enriched in steroid hormone biosynthesis, fatty acid metabolism, and glycerophospholipid metabolism for prostaglandin G2, 5‐oxoeicosatetraenoic acid, progesterone, androsterone, etiocholanolone, and hydrocortisone. Transcriptomics analysis revealed that chronic Del exposure caused lipid metabolism disorder, endocrine disruption, and proinflammatory immune response by upregulating the pla2g4, cox2, log5, ptgis, lcn, and cbr expression. Importantly, the integrative analysis of transcriptomics and metabolomics indicated that the arachidonic acid metabolism pathway and steroid hormone biosynthesis were decisive processes in the brain tissue of crucian carp after Del exposure. Furthermore, Del exposure perturbed the tight junction, HIF‐1 signaling pathway, and thyroid hormone signaling pathway. Overall, transcriptome and metabolome data of our study offer a new insight to assess the risk of chronic Del exposure in fish brains. [ABSTRACT FROM AUTHOR]

Background: The Liver Imaging Reporting and Data System (LI‐RADS) is widely accepted as a reliable diagnostic scheme for hepatocellular carcinoma (HCC) in at‐risk patients. However, its application is hampered by substantial complexity and suboptimal diagnostic sensitivity. Purpose: To propose data‐driven modifications to the LI‐RADS version 2018 (v2018) major feature system (rLI‐RADS) on gadoxetate disodium (EOB)‐enhanced magnetic resonance imaging (MRI) to improve sensitivity and simplicity while maintaining high positive predictive value (PPV) for detecting HCC. Study Type: Retrospective. Population: Two hundred and twenty‐four consecutive at‐risk patients (training dataset: 169, independent testing dataset: 55) with 742 LR‐3 to LR‐5 liver observations (HCC: N = 498 [67%]) were analyzed from a prospective observational registry collected between July 2015 and September 2018. Field Strength/Sequence: 3.0 T/T2‐weighted fast spin‐echo, diffusion‐weighted spin‐echo based echo‐planar and three‐dimensional (3D) T1‐weighted gradient echo sequences. Assessment: All images were evaluated by three independent abdominal radiologists who were blinded to all clinical, pathological, and follow‐up information. Composite reference standards of either histopathology or imaging follow‐up were used. Statistical Tests: In the training dataset, LI‐RADS v2018 major features were used to develop rLI‐RADS based on their associated PPV for HCC. In an independent testing set, diagnostic performances of LI‐RADS v2018 and rLI‐RADS were computed using a generalized estimating equation model and compared with McNemar's test. A P value <0.05 was considered statistically significant. Results: The median (interquartile range) size of liver observations was 13 mm (7–27 mm). The diagnostic table for rLI‐RADS encompassed 9 cells, as opposed to 16 cells for LI‐RADS v2018. In the testing set, compared to LI‐RADS v2018, rLI‐RADS category 5 demonstrated a significantly superior sensitivity (76% vs. 61%) while maintaining comparably high PPV (92.5% vs. 94.1%, P = 0.126). Data Conclusion: Compared with LI‐RADS v2018, rLI‐RADS demonstrated improved simplicity and significantly superior diagnostic sensitivity for HCC in at‐risk patients. Level of Evidence: 3 Technical Efficacy Stage: 2 [ABSTRACT FROM AUTHOR]

The complete mitochondrial genome of the hybrid ofCyprinus carpio L. mirror(♀)× Cyprinus Carpio var. singuonensis(♂) was characterized first in this study. The total length of the genome was identical to the female parent as 16,581 bp, and the overall base composition was 31.80% A, 24.85% T, 27.55% C and 15.80% G, with a slight A + T bias. It contained 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes and 2 main non-coding regions (the control region and the origin of the light-strand replication). This study discovered the 99.70% sequence identity between the hybrid and its female parent, which confirmed the maternal inheritance pattern followed by the mitochondrial genome of the hybrid. However, the sequence alignment of mitochondrial genomes between the hybrid and its female parent revealed a total of 47 variable sites in 15 genes or regions, especially 25 sense mutations in 6 PCGs. The complete mitochondrial genome sequence of the hybridCyprinus capio Furongmay provide an important dataset for further study in mitochondrial inheritance mechanism. [ABSTRACT FROM PUBLISHER]

In this study, 16 sets of primers were used to amplify contiguous, overlapping segments of the complete mitochondrial DNA (mtDNA) ofDanio chrysotaenitusin order to characterize and compare their mitochondrial genomes. The total length of the mitochondrial genome is 16,608 bp and deposited in the GenBank with accession numbers KP407138. The organization of the mitochondrial genomes was similar to those reported from other Mountain carp fishes mitochondrial genomes containing 37 genes (13 protein-coding genes, 2 ribosomal RNA, and 22 transfer RNAs) and a major non-coding control region (D-loop region). Most genes were encoded on the H-strand, except for the ND6 and 8 tRNA genes, encoding on the L-strand. The nucleotide skewness for the coding strands ofDanio chrysotaenitus(AT-skew = 0.10, GC-skew = −0.25) is biased toward T and G. The complete mitogenome may provide important date set for the study of genetic mechanism ofDanio chrysotaenitus. [ABSTRACT FROM AUTHOR]

The complete mitochondrial genome ofParasinilabeo assimilishas been determined in this study. The gene composition, arrangement and transcriptional orientation inP. assimilismitogenome were identical to most vertebrates. The complete mitogenome ofP. assimiliswas 16,602 bp in size with 13 protein coding genes, 22 tRNA genes and a control region. Two start codon patterns and three stop codon patterns were found in protein-coding genes. Only the tRNA-Ser2 could not fold into a typical clover-leaf secondary structure due to the lack of the dihydrouridine arm. Sequence alignment results suggest that the complete mitogenome ofP. assimilisis an efficient tool to study molecular phylogenetics, biogeography and adaptive evolution of this lineage. [ABSTRACT FROM PUBLISHER]

The complete mitochondrial genome ofVanmanenia pingchowensiswas determined in this study. The gene composition, arrangement and transcriptional orientation inV. pingchowensismitogenome were identical to most vertebrates. The complete mitogenome ofV. pingchowensiswas 15,560 bp in size with 13 protein coding genes, 22 tRNA genes, and a control region. Two start codon patterns and three stop codon patterns were found in protein-coding genes. Only the tRNA-Ser2 could not fold into a typical clover-leaf secondary structure for lacking the dihydrouridine arm. Sequences alignment results suggest that the complete mitogenome ofV. pingchowensisis an efficient tool to study molecular phylogenetics, biogeography and adaptive evolution of this lineage. [ABSTRACT FROM PUBLISHER]

Objectives: This study aimed to evaluate the potential of deep learning (DL)-assisted automated three-dimensional quantitative tumor burden at MRI to predict postoperative early recurrence (ER) of hepatocellular carcinoma (HCC)., Materials and Methods: This was a single-center retrospective study enrolling patients who underwent resection for BCLC A and B HCC and preoperative contrast-enhanced MRI. Quantitative total tumor volume (cm 3 ) and total tumor burden (TTB, %) were obtained using a DL automated segmentation tool. Radiologists' visual assessment was used to ensure the quality control of automated segmentation. The prognostic value of clinicopathological variables and tumor burden-related parameters for ER was determined by Cox regression analyses., Results: A total of 592 patients were included, with 525 and 67 patients assigned to BCLC A and B, respectively (2-year ER rate: 30.0% vs. 45.3%; hazard ratio (HR) = 1.8; p = 0.007). TTB was the most important predictor of ER (HR = 2.2; p < 0.001). Using 6.84% as the threshold of TTB, two ER risk strata were obtained in overall (p < 0.001), BCLC A (p < 0.001), and BCLC B (p = 0.027) patients, respectively. The BCLC B low-TTB patients had a similar risk for ER to BCLC A patients and thus were reassigned to a BCLC A n stage; whilst the BCLC B high-TTB patients remained in a BCLC B n stage. The 2-year ER rate was 30.5% for BCLC A n patients vs. 58.1% for BCLC B n patients (HR = 2.8; p < 0.001)., Conclusions: TTB determined by DL-based automated segmentation at MRI was a predictive biomarker for postoperative ER and facilitated refined subcategorization of patients within BCLC stages A and B., Clinical Relevance Statement: Total tumor burden derived by deep learning-based automated segmentation at MRI may serve as an imaging biomarker for predicting early recurrence, thereby improving subclassification of Barcelona Clinic Liver Cancer A and B hepatocellular carcinoma patients after hepatectomy., Key Points: Total tumor burden (TTB) is important for Barcelona Clinic Liver Cancer (BCLC) staging, but is heterogenous. TTB derived by deep learning-based automated segmentation was predictive of postoperative early recurrence. Incorporating TTB into the BCLC algorithm resulted in successful subcategorization of BCLC A and B patients., (© 2024. The Author(s).)

The complete mitochondrial genome of the hybrid of Cyprinus carpio L. mirror (♀)×  Cyprinus Carpio var. singuonensis (♂) was characterized first in this study. The total length of the genome was identical to the female parent as 16,581 bp, and the overall base composition was 31.80% A, 24.85% T, 27.55% C and 15.80% G, with a slight A + T bias. It contained 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes and 2 main non-coding regions (the control region and the origin of the light-strand replication). This study discovered the 99.70% sequence identity between the hybrid and its female parent, which confirmed the maternal inheritance pattern followed by the mitochondrial genome of the hybrid. However, the sequence alignment of mitochondrial genomes between the hybrid and its female parent revealed a total of 47 variable sites in 15 genes or regions, especially 25 sense mutations in 6 PCGs. The complete mitochondrial genome sequence of the hybrid Cyprinus capio Furong may provide an important dataset for further study in mitochondrial inheritance mechanism., Competing Interests: The authors report no conflicts of interest. The authors are responsible for the content and writing of the paper., (© 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.)