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3. IMA Genome – F19: A genome assembly and annotation guide to empower mycologists, including annotated draft genome sequences of Ceratocystis pirilliformis, Diaporthe australafricana, Fusarium ophioides, Paecilomyces lecythidis, and Sporothrix stenoceras

Author

Aylward, Janneke, Wilson, Andi M., Visagie, Cobus M., Spraker, Joseph, Barnes, Irene, Buitendag, Carla, Ceriani, Callin, Del Mar Angel, Lina, du Plessis, Deanné, Fuchs, Taygen, Gasser, Katharina, Krämer, Daniella, Li, WenWen, Munsamy, Kiara, Piso, Anja, Price, Jenna-Lee, Sonnekus, Byron, Thomas, Chanel, van der Nest, Ariska, van Dijk, Alida, van Heerden, Alishia, van Vuuren, Nicole, Yilmaz, Neriman, Duong, Tuan A., van der Merwe, Nicolaas A., Wingfield, Michael J., and Wingfield, Brenda D.

Published
2024
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5. IMA genome-F18

Author

Visagie, Cobus M, Magistà, Donato, Ferrara, Massimo, Balocchi, Felipe, Duong, Tuan A, Eichmeier, Ales, Gramaje, David, Aylward, Janneke, Baker, Scott E, Barnes, Irene, Calhoun, Sara, De Angelis, Maria, Frisvad, Jens C, Hakalova, Eliska, Hayes, Richard D, Houbraken, Jos, Grigoriev, Igor V, LaButti, Kurt, Leal, Catarina, Lipzen, Anna, Ng, Vivian, Pangilinan, Jasmyn, Pecenka, Jakub, Perrone, Giancarlo, Piso, Anja, Savage, Emily, Spetik, Milan, Wingfield, Michael J, Zhang, Yu, and Wingfield, Brenda D

Subjects
Microbiology, Plant Biology, Biological Sciences, Plant biology
Published
2023

8. IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicilliumbiforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1

Author

Visagie, Cobus M., Magistà, Donato, Ferrara, Massimo, Balocchi, Felipe, Duong, Tuan A., Eichmeier, Ales, Gramaje, David, Aylward, Janneke, Baker, Scott E., Barnes, Irene, Calhoun, Sara, De Angelis, Maria, Frisvad, Jens C., Hakalova, Eliska, Hayes, Richard D., Houbraken, Jos, Grigoriev, Igor V., LaButti, Kurt, Leal, Catarina, Lipzen, Anna, Ng, Vivian, Pangilinan, Jasmyn, Pecenka, Jakub, Perrone, Giancarlo, Piso, Anja, Savage, Emily, Spetik, Milan, Wingfield, Michael J., Zhang, Yu, and Wingfield, Brenda D.

Published
2023
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9. Sporothrix and Sporotrichosis: A South African Perspective on a Growing Global Health Threat.

Author

Fuchs, Taygen, Visagie, Cobus M., Wingfield, Brenda D., and Wingfield, Michael J.

Subjects
*EMERGING infectious diseases, *MYCOSES, *SPOROTRICHOSIS, *GOLD mining, SOUTH African history
Abstract

Sporotrichosis is a disease that arises from a fungal infection caused by members of the Ascomycete genus Sporothrix. The disease has a unique history in South Africa, due to an association with gold mines, where large numbers of mine workers were infected in the 1930s and 1940s. This was likely driven by hot humid conditions and timber supports used in these mine shafts. Furthermore, the disease is the most common subcutaneous fungal infection amongst the general population in South Africa, and the large number of immunocompromised individuals increases the public health risk in the country. Sporothrix is a genus in the Ophiostomatales, a fungal order primarily associated with environmental habitats. Unsurprisingly, sporotrichosis therefore has a documented history of sapronotic transmission from contaminated plant material. This review provides insights into the understanding of sporotrichosis and Sporothrix species, with a particular emphasis on the South African situation. We highlight knowledge gaps, particularly regarding the ecological factors influencing the occurrence and distribution of these species, which in turn affect the patterns of sporotrichosis. We also emphasise a need for ongoing proactive research and surveillance to prevent future outbreaks of sporotrichosis, an emerging disease with growing health implications worldwide. [ABSTRACT FROM AUTHOR]

Published
2024
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10. Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK)

Author

Nilsson, R Henrik, Taylor, Andy FS, Adams, Rachel I, Baschien, Christiane, Bengtsson-Palme, Johan, Cangren, Patrik, Coleine, Claudia, Daniel, Heide-Marie, Glassman, Sydney I, Hirooka, Yuuri, Irinyi, Laszlo, Iršėnaitė, Reda, Martin-Sanchez, Pedro M, Meyer, Wieland, Oh, Seung-Yoon, Sampaio, Jose Paulo, Seifert, Keith A, Sklenář, Frantisek, Stubbe, Dirk, Suh, Sung-Oui, Summerbell, Richard, Svantesson, Sten, Unterseher, Martin, Visagie, Cobus M, Weiss, Michael, Woudenberg, Joyce HC, Wurzbacher, Christian, Van den Wyngaert, Silke, Yilmaz, Neriman, Yurkov, Andrey, Kõljalg, Urmas, and Abarenkov, Kessy

Subjects
Microbiology, Biological Sciences, Indoor mycobiome, built environment, molecular identification, fungi, taxonomy, systematics, sequence annotation, metadata, open data, Ecology, Plant biology
Abstract

Recent DNA-based studies have shown that the built environment is surprisingly rich in fungi. These indoor fungi - whether transient visitors or more persistent residents - may hold clues to the rising levels of human allergies and other medical and building-related health problems observed globally. The taxonomic identity of these fungi is crucial in such pursuits. Molecular identification of the built mycobiome is no trivial undertaking, however, given the large number of unidentified, misidentified, and technically compromised fungal sequences in public sequence databases. In addition, the sequence metadata required to make informed taxonomic decisions - such as country and host/substrate of collection - are often lacking even from reference and ex-type sequences. Here we report on a taxonomic annotation workshop (April 10-11, 2017) organized at the James Hutton Institute/University of Aberdeen (UK) to facilitate reproducible studies of the built mycobiome. The 32 participants went through public fungal ITS barcode sequences related to the built mycobiome for taxonomic and nomenclatural correctness, technical quality, and metadata availability. A total of 19,508 changes - including 4,783 name changes, 14,121 metadata annotations, and the removal of 99 technically compromised sequences - were implemented in the UNITE database for molecular identification of fungi (https://unite.ut.ee/) and shared with a range of other databases and downstream resources. Among the genera that saw the largest number of changes were Penicillium, Talaromyces, Cladosporium, Acremonium, and Alternaria, all of them of significant importance in both culture-based and culture-independent surveys of the built environment.

Published
2018

14. IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1

Author

Visagie, Cobus M., Magistà, Donato, Ferrara, Massimo, Balocchi, Felipe, Duong, Tuan A., Eichmeier, Ales, Gramaje, David, Aylward, Janneke, Baker, Scott E., Barnes, Irene, Calhoun, Sara, De Angelis, Maria, Frisvad, Jens C., Hakalova, Eliska, Hayes, Richard D., Houbraken, Jos, Grigoriev, Igor V., LaButti, Kurt, Leal, Catarina, Lipzen, Anna, Ng, Vivian, Pangilinan, Jasmyn, Pecenka, Jakub, Perrone, Giancarlo, Piso, Anja, Savage, Emily, Spetik, Milan, Wingfield, Michael J., Zhang, Yu, Wingfield, Brenda D., Visagie, Cobus M., Magistà, Donato, Ferrara, Massimo, Balocchi, Felipe, Duong, Tuan A., Eichmeier, Ales, Gramaje, David, Aylward, Janneke, Baker, Scott E., Barnes, Irene, Calhoun, Sara, De Angelis, Maria, Frisvad, Jens C., Hakalova, Eliska, Hayes, Richard D., Houbraken, Jos, Grigoriev, Igor V., LaButti, Kurt, Leal, Catarina, Lipzen, Anna, Ng, Vivian, Pangilinan, Jasmyn, Pecenka, Jakub, Perrone, Giancarlo, Piso, Anja, Savage, Emily, Spetik, Milan, Wingfield, Michael J., Zhang, Yu, and Wingfield, Brenda D.

Published
2023

15. IMA genome-F18 : The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1

Author

Ministry of Education, Youth and Sports (Czech Republic), Mendel University, Department of Energy (US), Joint Genome Institute (US), Bioenergy Research Center (US), Department of Science and Innovation (South Africa), National Research Foundation (South Africa), Visagie, Cobus M., Magistà, Donato, Ferrara, Massimo, Balocchi, Felipe, Duong, Tuan A., Eichmeier, Ales, Gramaje, David, Aylward, Janneke, Baker, Scott E., Barnes, Irene, Calhoun, Sara, Angelis, Maria de, Frisvad, Jens C., Hakalova, Eliska, Hayes, Richard D., Houbraken, Jos, Grigoriev, Igor V., LaButti, Kurt, Leal, Catarina, Lipzen, Anna, Ng, Vivian, Pangilinan, Jasmyn, Pecenka, Jakub, Perrone, Giancarlo, Piso, Anja, Savage, Emily, Spetik, Milan, Wingfield, Michael J., Zhang, Yu, Wingfield, Brenda D., Ministry of Education, Youth and Sports (Czech Republic), Mendel University, Department of Energy (US), Joint Genome Institute (US), Bioenergy Research Center (US), Department of Science and Innovation (South Africa), National Research Foundation (South Africa), Visagie, Cobus M., Magistà, Donato, Ferrara, Massimo, Balocchi, Felipe, Duong, Tuan A., Eichmeier, Ales, Gramaje, David, Aylward, Janneke, Baker, Scott E., Barnes, Irene, Calhoun, Sara, Angelis, Maria de, Frisvad, Jens C., Hakalova, Eliska, Hayes, Richard D., Houbraken, Jos, Grigoriev, Igor V., LaButti, Kurt, Leal, Catarina, Lipzen, Anna, Ng, Vivian, Pangilinan, Jasmyn, Pecenka, Jakub, Perrone, Giancarlo, Piso, Anja, Savage, Emily, Spetik, Milan, Wingfield, Michael J., Zhang, Yu, and Wingfield, Brenda D.

Abstract

Sequencing fungal genomes has now become very common and the list of genomes in this manuscript reflects this. Particularly relevant is that the first announcement is a re-identification of Penicillium genomes available on NCBI. The fact that more than 100 of these genomes have been deposited without the correct species names speak volumes to the fact that we must continue training fungal taxonomists and the importance of the International Mycological Association (after which this journal is named). When we started the genome series in 2013, one of the essential aspects was the need to have a phylogenetic tree as part of the manuscript. This came about as the result of a discussion with colleagues in NCBI who were trying to deal with the very many incorrectly identified bacterial genomes (at the time) which had been submitted to NCBI. We are now in the same position with fungal genomes. Sequencing a fungal genome is all too easy but providing a correct species name and ensuring that the fungus has in fact been correctly identified seems to be more difficult. We know that there are thousands of fungi which have not yet been described. The availability of sequence data has made identification of fungi easier but also serves to highlight the need to have a fungal taxonomist in the project to make sure that mistakes are not made.

Published
2023

20. Fungi and their mycotoxins associated with maize ear rots from emerging maize farms in the Eastern Cape, South Africa

Author

Jenna-Lee Price, Yilmaz, Neriman, and Visagie, Cobus M.

Subjects
Ear rot, maize, multiple mycotoxins
Abstract

Maize is South Africa’s most important crop. The Eastern Cape (EC) has been identified as an area of strategic importance for increased production, however, research on diseases affecting production in the province is lacking. This baseline study thus surveyed for ear rots at EC farms and determined the species and mycotoxins present. Diseased maize ears were collected from 11 farms. Fungal isolations were made and strains identified using morphology and DNA sequence comparisons. Translation elongation factor 1- α was sequenced to identify Cladosporium, Fusarium and Stenocarpella strains. LC-MS/MS was used to test for the presence 14 mycotoxins, including aflatoxin B1, aflatoxin B2, aflatoxin G1, deoxynivalenol (DON), diplodiatoxin, 15-acetyl-deoxynivalenol (15-ADON), fumonisin B1 (FUM B1), fumonisin B2 (FUM B2), fumonisin B3 (FUM B3), HT-2, T2 and zearalenone (ZEA).Ninety-three fungal strains were isolated and found to belong to Fusarium (73%), Stenocarpella (19%) and Cladosporium (8%). Mycotoxigenic species detected included Fusarium boothii (DON), F. graminearum (DON and ZEA), F. oxysporum and F. verticillioides(FUM); F. poae, F. subglutinans and F. temperatum (various emerging mycotoxins); and Stenocarpella maydis (diplodiatoxin). Mycotoxin analysis indicated samples were contaminated with DON (58%), diplodiatoxin (58%), 15-ADON (42%) and ZEA (25%).This study found known mycotoxin producers and their associated mycotoxins. Mycotoxins were detected at elevated levels, with 45% of the samples found to be contaminated with multiple mycotoxins. The identification and preservation of the causal agents will allow future work to focus on understanding abiotic and biotic factors that influence mycotoxin production.&nbsp

Published
2022
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21. IMA Genome-F 6: Draft genome sequences of Armillaria fuscipes, Ceratocystiopsis minuta, Ceratocystis adiposa, Endoconidiophora laricicola, E. polonica and Penicillium freii DAOMC 242723

Author

Wingfield, Brenda D., Ambler, Jon M., Coetzee, Martin P. A., de Beer, Z. Wilhelm, Duong, Tuan A., Joubert, Fourie, Hammerbacher, Almuth, McTaggart, Alistair R., Naidoo, Kershney, Nguyen, Hai D. T., Ponomareva, Ekaterina, Santana, Quentin S., Seifert, Keith A., Steenkamp, Emma T., Trollip, Conrad, van der Nest, Magriet A., Visagie, Cobus M., Wilken, P. Markus, Wingfield, Michael J., and Yilmaz, Neriman

Published
2016
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23. Da Vinci's yeast: Blastobotrys davincii f.a., sp. nov

Author

Visagie, Cobus M, Boekhout, Teun, Theelen, Bart, Dijksterhuis, Jan, Yilmaz, Neriman, Seifert, Keith A, Visagie, Cobus M, Boekhout, Teun, Theelen, Bart, Dijksterhuis, Jan, Yilmaz, Neriman, and Seifert, Keith A

Abstract

A new species of the yeast genus Blastobotrys was discovered during a worldwide survey of culturable xerophilic fungi in house dust. Several culture-dependent and independent studies from around the world detected the same species from a wide range of substrates including indoor air, cave wall paintings, bats, mummies, and the iconic self-portrait of Leonardo da Vinci from ca 1512. However, none of these studies identified their strains, clones, or OTUs as Blastobotrys. We introduce the new species as Blastobotrys davincii f.a., sp. nov. (holotype CBS H-24879) and delineate it from other species using morphological, phylogenetic, and physiological characters. The new species of asexually (anamorphic) budding yeast is classified in Trichomonascaceae and forms a clade along with its associated sexual state genus Trichomonascus. Despite the decade-old requirement to use a single generic name for fungi, both names are still used. Selection of the preferred name awaits a formal nomenclatural proposal. We present arguments for adopting Blastobotrys over Trichomonascus and introduce four new combinations as Blastobotrys allociferrii (≡ Candida allociferrii), B. fungorum (≡ Sporothrix fungorum), B. mucifer (≡ Candida mucifera), and Blastobotrys vanleenenianus (≡ Trichomonascus vanleenenianus). We provide a nomenclatural review and an accepted species list for the 37 accepted species in the Blastobotrys/Trichomonascus clade. Finally, we discuss the identity of the DNA clones detected on the da Vinci portrait, and the importance of using appropriate media to isolate xerophilic or halophilic fungi.

Published
2022

25. Fungal Planet description sheets : 1436 –1477

Author

Tan, Yu Pei, Bishop-Hurley, Sharon L., Shivas, Roger G., Cowan, Don, Maggs-Kölling, Gillian, Maharachchikumbura, Sajeewa S. N., Pinruan, Umpawa, Bransgrove, Kaylene L., De la Peña-Lastra, Saúl, Larsson, Ellen, Lebel, Teresa, Mahadevakumar, Shivannegowda, Mateos, Antonio, Osieck, Eduard R., Rigueiro-Rodríguez, Antonio, Sommai, Sujinda, Ajithkumar, Kadaiah, Akulov, Alex, Anderson, Freda E., Arenas, Francisco, Balashov, Sergey, Bañares, Ángel, Berger, Dave K., Bianchinotti, María V., Bien, Steffen, Bilański, Piotr, Boxshall, Amelia-Grace, Bradshaw, Michael, Broadbridge, Jasmin, Calaça, Francisco J.S., Campos-Quiroz, Carolina, Carrasco-Fernández, Jorge, Castro, Jean F., Chaimongkol, Soravit, Chandranayaka, Siddaiah, Chen, Yanpeng, Comben, David, Dearnaley, John, Ferreira-Sá, Antônio S., Dhileepan, Kunjithapatham, Díaz, Marina L., Divakar, Pradeep K., Xavier-Santos, Solange, Fernández-Bravo, Ana, Gené, Josepa, Guard, Frances E., Guerra, Matías, Gunaseelan, Sugantha, Houbraken, Jos, Janik-Superson, Katarzyna, Jankowiak, Robert, Jeppson, Mikael, Jurjević, Želko, Kaliyaperumal, Malarvizhi, Kelly, Lisa A., Kezo, Kezhocuyi, Khalid, Abdul N., Khamsuntorn, Phongsawat, Kidanemariam, Dawit, Kiran, Munaza, Lacey, Ernest, Langer, Gitta J., López-Llorca, Luis V., Luangsa-ard, Janet J., Lueangjaroenkit, Piyangkun, Lumbsch, H. Thorsten, Maciá-Vicente, Jose G., Mamatha Bhanu, Lakkur S., Marney, Thomas S., Marqués-Gálvez, José E., Morte, Asunción, Naseer, Arooj, Navarro-Ródenas, Alfonso, Oyedele, Oluwawapelumi, Peters, Sandra, Piskorski, Sebastian, Quijada, Luis, Ramírez, Gustavo H., Raja, Kanaga valli, Razzaq, Annum, Rico, Víctor J., Rodríguez, Antonio, Ruszkiewicz-Michalska, Małgorzata, Sánchez, Romina M., Santelices, Cecilia, Savitha, Attihalli S., Serrano, Miguel, Leonardo-Silva, Lucas, Solheim, Halvor, Somrithipol, Sayanh, Sreenivasa, Marikunte Y., Stępniewska, Hanna, Strapagiel, Dominik, Taylor, Tamara, Torres-Garcia, Daniel, Vauras, Jukka, Villarreal, Manuel, Visagie, Cobus M., Wołkowycki, Marek, Yingkunchao, Wittayothin, Zapora, Ewa, Groenewald, Johannes Z., Crous, Pedro W., Westerdijk Fungal Biodiversity Institute, Westerdijk Fungal Biodiversity Institute - Food and Indoor Mycology, Microbial Ecology (ME), Westerdijk Fungal Biodiversity Institute - Evolutionary Phytopathology, Universidad de Alicante. Departamento de Ciencias del Mar y Biología Aplicada, Universidad de Alicante. Instituto Multidisciplinar para el Estudio del Medio 'Ramón Margalef', and Fitopatología

Subjects
ITS nrDNA barcodes, LSU, new taxa, systematics, Plantenecologie en Natuurbeheer, Plant Ecology and Nature Conservation, Ecology, Evolution, Behavior and Systematics
Abstract

Novel species of fungi described in this study include those from various countries as follows: Argentina, Colletotrichum araujiae on leaves, stems and fruits of Araujia hortorum. Australia, Agaricus pateritonsus on soil, Curvularia fraserae on dying leaf of Bothriochloa insculpta, Curvularia millisiae from yellowing leaf tips of Cyperus aromaticus, Marasmius brunneolorobustus on well-rotted wood, Nigrospora cooperae from necrotic leaf of Heteropogon contortus, Penicillium tealii from the body of a dead spider, Pseudocercospora robertsiorum from leaf spots of Senna tora, Talaromyces atkinsoniae from gills of Marasmius crinis-equi and Zasmidium pearceae from leaf spots of Smilax glyciphylla. Brazil, Preussia bezerrensis fromair. Chile, Paraconiothyrium kelleni from the rhizosphere of Fragaria chiloensis subsp. chiloensis f. chiloensis. Finland, Inocybe udicola onsoilinmixedforest with Betula pendula, Populus tremula, Picea abies and Alnus incana. France, Myrmecridium normannianum on dead culm of unidentified Poaceae. Germany, Vexillomyces fraxinicola from symptomless stem wood of Fraxinus excelsior. India, Diaporthe limoniae on infected fruit of Limonia acidissima, Didymella naikii on leaves of Cajanus cajan, and Fulvifomes mangroviensis on basal trunk of Aegiceras corniculatum. Indonesia, Penicillium ezekielii from Zea mays kernels. Namibia, Neocamarosporium calicoremae and Neocladosporium calicoremae on stems of Calicorema capitata, and Pleiochaeta adenolobi on symptomatic leaves of Adenolobus pechuelii. Netherlands, Chalara pteridii on stems of Pteridium aquilinum, Neomackenziella juncicola (incl. Neomackenziella gen. nov.)and Sporidesmiella junci from dead culms of Juncus effusus. Pakistan, Inocybe longistipitata on soil in a Quercus forest. Poland, Phytophthora viadrina from rhizosphere soil of Quercus robur, and Septoria krystynae on leaf spots of Viscum album. Portugal (Azores), Acrogenospora stellata on dead wood or bark. South Africa, Phyllactinia greyiae on leaves of Greyia sutherlandii and Punctelia anae on bark of Vachellia karroo. Spain, Anteaglonium lusitanicum on decaying wood of Prunus lusitanica subsp. lusitanica, Hawksworthiomyces riparius from fluvial sediments, Lophiostoma carabassense endophytic in roots of Limbarda crithmoides, and Tuber mohedanoi from calcareussoils. Spain (Canary Islands), Mycena laurisilvae on stumps and woody debris. Sweden, Elaphomyces geminus from soil under Quercus robur. Thailand, Lactifluus chiangraiensis on soil under Pinus merkusii, Lactifluus nakhonphanomensis and Xerocomus sisongkhramensis on soil under Dipterocarpus trees. Ukraine, Valsonectria robiniae on dead twigs of Robinia hispida. USA, Spiralomyces americanus (incl. Spiralomyces gen. nov.) from office air. Morphological and culture characteristics are supported by DNA barcodes.

Published
2022

26. Along the footpath of Penicillium discovery: Six new species from the Woodville Big Tree Forest Trail.

Author

Visagie, Cobus M. and Yilmaz, Neriman

Subjects
*RNA polymerase II, *PENICILLIUM, *OCHRATOXINS, *RIBOSOMAL DNA, *SPECIES, *TRAILS, *GENETIC barcoding
Abstract

In this study, we studied the diversity of Penicillium occurring in soil collected along the Woodville Big Tree Forest Trail situated close to the coastal town of Wilderness in South Africa. Strains were accessioned into a collection and then identified to species based on β-tubulin DNA sequences, which is the recommended DNA barcode for the genus. The 74 strains were found to represent 18 species, including six we consider undescribed. Here, we introduce them as Penicillium claroviride, P. kalander, P. mattheeae, P. outeniquaense, P. subfuscum, and P. umkhoba. Phylogenetic comparisons were made, and genealogical concordance was demonstrated for these new species using DNA sequences from nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS barcode), β-tubulin, calmodulin, and RNA polymerase II second largest subunit. Notes on morphological characters distinguishing the new species from their close relatives are provided. [ABSTRACT FROM AUTHOR]

Published
2023
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27. Da Vinci's yeast: Blastobotrys davincii f.a., sp. nov.

Author

Visagie, Cobus M., Boekhout, Teun, Theelen, Bart, Dijksterhuis, Jan, Yilmaz, Neriman, and Seifert, Keith A.

Abstract

A new species of the yeast genus Blastobotrys was discovered during a worldwide survey of culturable xerophilic fungi in house dust. Several culture‐dependent and independent studies from around the world detected the same species from a wide range of substrates including indoor air, cave wall paintings, bats, mummies, and the iconic self‐portrait of Leonardo da Vinci from ca 1512. However, none of these studies identified their strains, clones, or OTUs as Blastobotrys. We introduce the new species as Blastobotrys davincii f.a., sp. nov. (holotype CBS H‐24879) and delineate it from other species using morphological, phylogenetic, and physiological characters. The new species of asexually (anamorphic) budding yeast is classified in Trichomonascaceae and forms a clade along with its associated sexual state genus Trichomonascus. Despite the decade‐old requirement to use a single generic name for fungi, both names are still used. Selection of the preferred name awaits a formal nomenclatural proposal. We present arguments for adopting Blastobotrys over Trichomonascus and introduce four new combinations as Blastobotrys allociferrii (≡ Candida allociferrii), B. fungorum (≡ Sporothrix fungorum), B. mucifer (≡ Candida mucifera), and Blastobotrys vanleenenianus (≡ Trichomonascus vanleenenianus). We provide a nomenclatural review and an accepted species list for the 37 accepted species in the Blastobotrys/Trichomonascus clade. Finally, we discuss the identity of the DNA clones detected on the da Vinci portrait, and the importance of using appropriate media to isolate xerophilic or halophilic fungi. Take‐away: Blastobotrys davincii is introduced as a new species.Surveys have detected this species, but could never correctly identify or name it.The species was found on the da Vinci portrait, mummies and other substrates.A nomenclature review and an accepted species list for the Blastobotrys/Trichomonascus clade is provided.Appropriate isolation media are important to allow for growth of specific fungi. [ABSTRACT FROM AUTHOR]

Published
2023
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30. Fungal Planet 953 – 18 December 2019

Author

Crous, P.W., Wingfield, M.J., Lombard, L., Roets, F., Swart, W.J., Alvarado, P., Carnegie, A.J., Moreno, G., Luangsaard, J., Thangavel, R., Alexandrova, A.V., Baseia, I.G., Bellanger, J.-M., Bessette, A.E., Bessette, A.R., De la Peña-Lastra, S., García, D., Gené, J., Pham, T.H.G., Heykoop, M., Malysheva, E., Malysheva, V., Martín, M.P., Morozova, O.V., Noisripoom, W., Overton, B.E., Rea, A.E., Sewall, B.J., Smith, M.E., Smyth, C.W., Tasanathai, K., Visagie, C.M., Adamčík, S., Alves, A., Andrade, J.P., Aninat, M.J., Araújo, R.V.B., Bordallo, J.J., Boufleur, T., Baroncelli, R., Barreto, R.W., Bolin, J., Cabero, J., Caboň, M., Cafà, G., Caffot, M.L.H., Cai, L., Carlavilla, J.R., Chávez, R., de Castro, R.R.L., Delgat, L., Deschuyteneer, D., Dios, M.M., Domínguez, L.S., Evans, H.C., Eyssartier, G., Ferreira, B.W., Figueiredo, C.N., Liu, F., Fournier, J., Galli-Terasawa, L.V., Gil-Durán, C., Glienke, C., Gonçalves, M.F.M., Gryta, H., Guarro, J., Himaman, W., Hywel-Jones, N., Iturrieta-González, I., Ivanushkina, N.E., Jargeat, P., Khalid, A.N., Khan, J., Kiran, M., Kiss, L., Kochkina, G.A., Kolařík, M., Kubátová, A., Lodge, D.J., Loizides, M., Luque, D., Manjón, J.L., Marbach, P.A.S., Massola, N.S., Mata, M., Miller, A.N., Mongkolsamrit, S., Moreau, P.-A., Morte, A., Mujic, A., Navarro-Ródenas, A., Németh, M.Z., Nóbrega, T.F., Nováková, A., Olariaga, I., Ozerskaya, S.M., Palma, M.A., Petters-Vandresen, D.A.L., Piontelli, E., Popov, E.S., Rodríguez, A., Requejo, Ó., Rodrigues, A.C.M., Rong, I.H., Roux, J., Seifert, K.A., Silva, B.D.B., Sklenář, F., Smith, J.A., Sousa, J.O., Souza, H.G., De Souza, J.T., Švec, K., Tanchaud, P., Tanney, J.B., Terasawa, F., Thanakitpipattana, D., Torres-Garcia, D., Vaca, I., Vaghefi, N., van Iperen, A.L., Vasilenko, O.V., Verbeken, A., Yilmaz, N., Zamora, J.C., Zapata, M., Jurjević, Ž., Groenewald, J.Z., Crous, Pedro W., van Iperen, Arien L., Groenewald, Johannes Z., Thangavel, Raja, Carnegie, Angus J., Wingfield, Michael J., Roux, Jolanda, Jurjević, Željko, Roets, Francois, Swart, Wijnand J., Smith, Jason A., Lombard, Lorenzo, Moreno, Gabriel, Carlavilla, Juan Ramón, Manjón, José Luis, Bellanger, Jean-Michel, Olariaga, Ibai, Giang, Pham Thi Ha, Alexandrova, Alina V., Morozova, Olga V., Rodrigues, Ana C.M., Baseia, Iuri G., Martín, María P., De la Peña-Lastra, Saúl, Alvarado, Pablo, Requejo, Óscar, Tanchaud, Patrice, Eyssartier, Guillaume, Jargeat, Patricia, Gryta, Hervé, Gil-Durán, Carlos, Chávez, Renato, Vaca, Inmaculada, Loizides, Michael, Moreau, Pierre-Arthur, Zapata, Mario, Palma, María Antonieta, Aninat, María José, Piontelli, Eduardo, Luangsa-ard, Jennifer, Tasanathai, Kanoksri, Noisripoom, Wasana, Hywel-Jones, Nigel, Mongkolsamrit, Suchada, Luangsa-ard, Janet Jennifer, Himaman, Winanda, Garcia, Daniel Torres, Guarro, Josep, Gené, Josepa, Petters-Vandresen, Desirrê Alexia Lourenço, Galli-Terasawa, Lygia Vitória, Terasawa, Francisco, Glienke, Chirlei, Araújo, Ruane V.B., Silva, Bianca D.B., Sousa, Julieth O., Zamora, Juan Carlos, Dios, Maria Martha, Caffot, María Luciana Hernández, Domínguez, Laura S., Kiss, Levente, Vaghefi, Niloofar, Németh, Márk Z., Miller, Andrew N., Fournier, Jacques, Nóbrega, Thaisa F., Ferreira, Bruno W., Barreto, Robert W., Evans, Harry C., Delgat, Lynn, Verbeken, Annemieke, Lodge, D. Jean, Thanakitpipattana, Donnaya, Visagie, Cobus M., Rong, Isabel H., Andrade, Jackeline Pereira, Marbach, Phellippe Arthur Santos, De Souza, Jorge Teodoro, Malysheva, Ekaterina, Malysheva, Vera, Deschuyteneer, Daniel, Heykoop, Michel, Mata, Milagro, Rea, Abigail E., Smyth, Christopher W., Overton, Barrie E., Sewall, Brent J., Smith, Matthew E., Mujic, Alija, Bolin, Jason, Bessette, Arleen, Bessette, Alan, Kiran, Munazza, Khalid, Abdul Nasir, Khan, Junaid, Adamčík, Slavomír, Caboň, Miroslav, Liu, Fang, Cai, Lei, Tanney, Joey B., Seifert, Keith A., Baroncelli, Riccardo, Cafà, Giovanni, de Castro, Renata Rebellato Linhares, Boufleur, Thais, Junior, Nelson Sidnei Massola, Yilmaz, Neriman, Nováková, Alena, Švec, Karel, Sklenář, František, Kolařík, Miroslav, Kubátová, Alena, Rodríguez, Antonio, Navarro-Ródenas, Alfonso, Morte, Asunción, Cabero, Julio, Luque, Diego, Gonçalves, Micael F.M., Alves, Artur, Bordallo, Juan Julián, Pham, Thi Ha Giang, Popov, Eugene S., Iturrieta-González, Isabel, García, Dania, Ivanushkina, Nataliya E., Kochkina, Galina A., Vasilenko, Oleg V., and Ozerskaya, Svetlana M.

Subjects
ITS nrDNA barcodes, LSU, Fungal Planet description sheets, systematics, new taxa, Research Article
Abstract

Novel species of fungi described in this study include those from various countries as follows: Antarctica, Apenidiella antarctica from permafrost, Cladosporium fildesense from an unidentified marine sponge. Argentina, Geastrum wrightii on humus in mixed forest. Australia, Golovinomyces glandulariae on Glandularia aristigera, Neoanungitea eucalyptorum on leaves of Eucalyptus grandis, Teratosphaeria corymbiicola on leaves of Corymbia ficifolia, Xylaria eucalypti on leaves of Eucalyptus radiata. Brazil, Bovista psammophila on soil, Fusarium awaxy on rotten stalks of Zea mays, Geastrum lanuginosum on leaf litter covered soil, Hermetothecium mikaniae-micranthae (incl. Hermetothecium gen. nov.) on Mikania micrantha, Penicillium reconvexovelosoi in soil, Stagonosporopsis vannaccii from pod of Glycine max. British Virgin Isles, Lactifluus guanensis on soil. Canada, Sorocybe oblongispora on resin of Picea rubens. Chile, Colletotrichum roseum on leaves of Lapageria rosea. China, Setophoma caverna from carbonatite in Karst cave. Colombia, Lareunionomyces eucalypticola on leaves of Eucalyptus grandis. Costa Rica, Psathyrella pivae on wood. Cyprus, Clavulina iris on calcareous substrate. France, Chromosera ambigua and Clavulina iris var. occidentalis on soil. French West Indies, Helminthosphaeria hispidissima on dead wood. Guatemala, Talaromyces guatemalensis in soil. Malaysia, Neotracylla pini (incl. Tracyllales ord. nov. and Neotracylla gen. nov.) and Vermiculariopsiella pini on needles of Pinus tecunumanii. New Zealand, Neoconiothyrium viticola on stems of Vitis vinifera, Parafenestella pittospori on Pittosporum tenuifolium, Pilidium novae-zelandiae on Phoenix sp. Pakistan, Russula quercus-floribundae on forest floor. Portugal, Trichoderma aestuarinum from saline water. Russia, Pluteus liliputianus on fallen branch of deciduous tree, Pluteus spurius on decaying deciduous wood or soil. South Africa, Alloconiothyrium encephalarti, Phyllosticta encephalarticola and Neothyrostroma encephalarti (incl. Neothyrostroma gen. nov.) on leaves of Encephalartos sp., Chalara eucalypticola on leaf spots of Eucalyptus grandis × urophylla, Clypeosphaeria oleae on leaves of Olea capensis, Cylindrocladiella postalofficium on leaf litter of Sideroxylon inerme, Cylindromonium eugeniicola (incl. Cylindromonium gen. nov.) on leaf litter of Eugenia capensis, Cyphellophora goniomatis on leaves of Gonioma kamassi, Nothodactylaria nephrolepidis (incl. Nothodactylaria gen. nov. and Nothodactylariaceae fam. nov.) on leaves of Nephrolepis exaltata, Falcocladium eucalypti and Gyrothrix eucalypti on leaves of Eucalyptus sp., Gyrothrix oleae on leaves of Olea capensis subsp. macrocarpa, Harzia metrosideri on leaf litter of Metrosideros sp., Hippopotamyces phragmitis (incl. Hippopotamyces gen. nov.) on leaves of Phragmites australis, Lectera philenopterae on Philenoptera violacea, Leptosillia mayteni on leaves of Maytenus heterophylla, Lithohypha aloicola and Neoplatysporoides aloes on leaves of Aloe sp., Millesimomyces rhoicissi (incl. Millesimomyces gen. nov.) on leaves of Rhoicissus digitata, Neodevriesia strelitziicola on leaf litter of Strelitzia nicolai, Neokirramyces syzygii (incl. Neokirramyces gen. nov.) on leaf spots of Syzygium sp., Nothoramichloridium perseae (incl. Nothoramichloridium gen. nov. and Anungitiomycetaceae fam. nov.) on leaves of Persea americana, Paramycosphaerella watsoniae on leaf spots of Watsonia sp., Penicillium cuddlyae from dog food, Podocarpomyces knysnanus (incl. Podocarpomyces gen. nov.) on leaves of Podocarpus falcatus, Pseudocercospora heteropyxidicola on leaf spots of Heteropyxis natalensis, Pseudopenidiella podocarpi, Scolecobasidium podocarpi and Ceramothyrium podocarpicola on leaves of Podocarpus latifolius, Scolecobasidium blechni on leaves of Blechnum capense, Stomiopeltis syzygii on leaves of Syzygium chordatum, Strelitziomyces knysnanus (incl. Strelitziomyces gen. nov.) on leaves of Strelitzia alba, Talaromyces clemensii from rotting wood in goldmine, Verrucocladosporium visseri on Carpobrotus edulis. Spain, Boletopsis mediterraneensis on soil, Calycina cortegadensisi on a living twig of Castanea sativa, Emmonsiellopsis tuberculata in fluvial sediments, Mollisia cortegadensis on dead attached twig of Quercus robur, Psathyrella ovispora on soil, Pseudobeltrania lauri on leaf litter of Laurus azorica, Terfezia dunensis in soil, Tuber lucentum in soil, Venturia submersa on submerged plant debris. Thailand, Cordyceps jakajanicola on cicada nymph, Cordyceps kuiburiensis on spider, Distoseptispora caricis on leaves of Carex sp., Ophiocordyceps khonkaenensis on cicada nymph. USA, Cytosporella juncicola and Davidiellomyces juncicola on culms of Juncus effusus, Monochaetia massachusettsianum from air sample, Neohelicomyces melaleucae and Periconia neobrittanica on leaves of Melaleuca styphelioides × lanceolata, Pseudocamarosporium eucalypti on leaves of Eucalyptus sp., Pseudogymnoascus lindneri from sediment in a mine, Pseudogymnoascus turneri from sediment in a railroad tunnel, Pulchroboletus sclerotiorum on soil, Zygosporium pseudomasonii on leaf of Serenoa repens. Vietnam, Boletus candidissimus and Veloporphyrellus vulpinus on soil. Morphological and culture characteristics are supported by DNA barcodes.

Published
2019

31. Re-Evaluation of the Taxonomy of Talaromyces minioluteus

Author

Pyrri, Ioanna Visagie, Cobus M. Soccio, Piera Houbraken, Jos

Abstract

Talaromyces minioluteus belongs to the section Trachyspermi, has a worldwide distribution and has been found on various substrates, especially on various (stored) food commodities and indoor environments. This species is phenotypically and phylogenetically closely related to T. chongqingensis and T. minnesotensis. The phylogenetic and morphological analyses of 37 strains previously identified as T. chongqingensis, T. minnesotensis and T. minioluteus revealed that this clade incudes eight species: the accepted species T. chongqingensis, T. minnesotensis and T. minioluteus, the newly proposed species T. calidominioluteus, T. africanus and T. germanicus, and the new combinations T. gaditanus (basionym Penicillium gaditanum) and T. samsonii (basionym Penicillium samsonii). In this study, we give insight of the phylogenetic relationships and provide detailed descriptions of the species belonging to this clade. Macromorphological features, especially colony growth rates, texture and conidial colors on agar media, are important characters for phenotypic differentiation between species.

Published
2021

34. Along the footpath of Penicilliumdiscovery: Six new species from the Woodville Big Tree Forest Trail

Author

Visagie, Cobus M. and Yilmaz, Neriman

Abstract

ABSTRACTIn this study, we studied the diversity of Penicilliumoccurring in soil collected along the Woodville Big Tree Forest Trail situated close to the coastal town of Wilderness in South Africa. Strains were accessioned into a collection and then identified to species based on β-tubulin DNA sequences, which is the recommended DNA barcode for the genus. The 74 strains were found to represent 18 species, including six we consider undescribed. Here, we introduce them as Penicillium claroviride, P. kalander, P. mattheeae, P. outeniquaense, P. subfuscum, and P. umkhoba. Phylogenetic comparisons were made, and genealogical concordance was demonstrated for these new species using DNA sequences from nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS barcode), β-tubulin, calmodulin, and RNA polymerase II second largest subunit. Notes on morphological characters distinguishing the new species from their close relatives are provided.

Published
2023
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35. IMA Genome – F19

Author

Aylward, Janneke, Wilson, Andi M., Visagie, Cobus M., Spraker, Joseph, Barnes, Irene, Buitendag, Carla, Ceriani, Callin, Del Mar Angel, Lina, du Plessis, Deanné, Fuchs, Taygen, Gasser, Katharina, Krämer, Daniella, Li, WenWen, Munsamy, Kiara, Piso, Anja, Price, Jenna-Lee, Sonnekus, Byron, Thomas, Chanel, van der Nest, Ariska, van Dijk, Alida, van Heerden, Alishia, van Vuuren, Nicole, Yilmaz, Neriman, Duong, Tuan A., van der Merwe, Nicolaas A., Wingfield, Michael J., and Wingfield, Brenda D.

Abstract

The pace at which Next Generation Sequence data is being produced continues to accelerate as technology improves. As a result, such data are increasingly becoming accessible to biologists outside of the field of bioinformatics. In contrast, access to training in the methods of genome assembly and annotation are not growing at a similar rate. In this issue, we report on a Genome Assembly Workshop for Mycologists that was held at the Forestry and Agricultural Biotechnology Institute (FABI) at the University of Pretoria, South Africa and make available the 12 draft genome sequences emanating from the event. With the aim of making the process of genome assembly and annotation more accessible to biologists, we provide a step-by-step guide to both genome assembly and annotation, intended to encourage and empower mycologists to use genome data in their research.

Published
2024
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38. A survey of xerophilic Aspergillus from indoor environment, including descriptions of two new section Aspergillus species producing eurotium-like sexual states

Author

Visagie, Cobus M., Yilmaz, Neriman, Renaud, Justin B., Sumarah, Mark W., Hubka, Vit, Frisvad, Jens Christian, Chen, Amanda J., Meijer, Martin, Seifert, Keith A., Visagie, Cobus M., Yilmaz, Neriman, Renaud, Justin B., Sumarah, Mark W., Hubka, Vit, Frisvad, Jens Christian, Chen, Amanda J., Meijer, Martin, and Seifert, Keith A.

Abstract

Xerophilic fungi grow at low water activity or low equilibrium relative humidity and are an important part of the indoor fungal community, of which Aspergillus is one of the dominant genera. A survey of xerophilic fungi isolated from Canadian and Hawaiian house dust resulted in the isolation of 1039 strains; 296 strains belong to Aspergillus and represented 37 species. Reference sequences were generated for all species and deposited in GenBank. Aspergillus sect. Aspergillus (formerly called Eurotium) was one of the most predominant groups from house dust with nine species identified. Additional cultures deposited as Eurotium were received from the Canadian Collection of Fungal Cultures and were also re-identified during this study. Among all strains, two species were found to be new and are introduced here as A. mallochii and A. megasporus. Phylogenetic comparisons with other species of section Aspergillus were made using sequences of ITS, beta-tubulin, calmodulin and RNA polymerase II second largest subunit. Morphological observations were made from cultures grown under standardized conditions. Aspergillus mallochii does not grow at 37 degrees C and produces roughened ascospores with incomplete equatorial furrows. Aspergillus megasporus produces large conidia (up to 12 mu m diam) and roughened ascospores with equatorial furrows. Echinulin, quinolactacin A(1) & A(2), preechinulin and neoechinulin A & B were detected as major extrolites of A. megasporus, while neoechinulin A & B and isoechinulin A, B & C were the major extrolites from A. mallochii.

Published
2017

39. Response to Pitt & Taylor 2016: Conservation ofAspergilluswithA. nigeras the conserved type is unnecessary and potentially disruptive

Author

Samson, Robert A., primary, Hubka, Vit, additional, Varga, Janos, additional, Houbraken, Jos, additional, Hong, Seung-Beom, additional, Klaassen, Corné H.W., additional, Perrone, Giancarlo, additional, Seifert, Keith A., additional, Magistá, Donato, additional, Visagie, Cobus M., additional, Kocsubé, Sandor, additional, Szigeti, Geongi, additional, Yaguchi, Takashi, additional, Peterson, Stephen W., additional, and Frisvad, Jens C., additional

Published
2017
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41. Diagnostic fragmentation filtering for the discovery of new chaetoglobosins and cytochalasins.

Author

Walsh, Jacob P., Renaud, Justin B., Hoogstra, Shawn, McMullin, David R., Ibrahim, Ashraf, Visagie, Cobus M., Tanney, Joey B., Yeung, Ken K.‐C., and Sumarah, Mark W.

Subjects
CYTOCHALASINS, NATURAL products, MASS spectrometers, PENICILLIUM, XYLARIA
Abstract

Rationale: Microbial natural products are often biosynthesized as classes of structurally related compounds that have similar tandem mass spectrometry (MS/MS) fragmentation patterns. Mining MS/MS datasets for precursor ions that share diagnostic or common features enables entire chemical classes to be identified, including novel derivatives that have previously been unreported. Analytical data analysis tools that can facilitate a class‐targeted approach to rapidly dereplicate known compounds and identify structural variants within complex matrices would be useful for the discovery of new natural products. Methods: A diagnostic fragmentation filtering (DFF) module was developed for MZmine to enable the efficient screening of MS/MS datasets for class‐specific product ions(s) and/or neutral loss(es). This approach was applied to series of the structurally related chaetoglobosin and cytochalasin classes of compounds. These were identified from the culture filtrates of three fungal genera: Chaetomium globosum, a putative new species of Penicillium (called here P. cf. discolor: closely related to P. discolor), and Xylaria sp. Extracts were subjected to LC/MS/MS analysis under positive electrospray ionization and operating in a data‐dependent acquisition mode, performed using a Thermo Q‐Exactive mass spectrometer. All MS/MS datasets were processed using the DFF module and screened for diagnostic product ions at m/z 130.0648 and 185.0704 for chaetoglobosins, and m/z 120.0808 and 146.0598 for cytochalasins. Results: Extracts of C. globosum and P. cf. discolor strains revealed different mixtures of chaetoglobosins, whereas the Xylaria sp. produced only cytochalasins; none of the strains studied produced both classes of compounds. The dominant chaetoglobosins produced by both C. globosum and P. cf. discolor were chaetoglobosins A, C, and F. Tetrahydrochaetoglobosin A was identified from P. cf. discolor extracts and is reported here for the first time as a natural product. The major cytochalasins produced by the Xylaria sp. were cytochalasin D and epoxy cytochalasin D. A larger unknown "cytochalasin‐like" molecule with the molecular formula C38H47NO10 was detected from Xylaria sp. culture filtrate extracts and is a current target for isolation and structural characterization. Conclusions: DFF is an effective LC/MS data analysis approach for rapidly identifying entire classes of compounds from complex mixtures. DFF has proved useful in the identification of new natural products and allowing for their partial characterization without the need for isolation. [ABSTRACT FROM AUTHOR]

Published
2019
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42. Four new Penicillium species isolated from the fynbos biome in South Africa, including a multigene phylogeny of section Lanata-Divaricata (vol 14, pg 96, 2015)

Author

Visagie, Cobus M., Houbraken, Jos, Seifert, Keith A., Samson, Robert A., Jacobs, Karin, Visagie, Cobus M., Houbraken, Jos, Seifert, Keith A., Samson, Robert A., and Jacobs, Karin

Abstract

A survey of the fynbos biome of South Africa resulted in the isolation and characterization of 61 distinct Penicillium species. ITS barcodes place six of these in section Lanata-Divaricata. Based on morphology and multigene phylogenies, species were identified as P. oxalicum, P. skrjabinii, and four that were previously unknown. Multigene phylogenies resolve the new species into three consistent clades. Species from these clades were compared morphologically, and the new species are described here as P. annulatum, P. curticaule, P. malacosphaerulum, and P. ortum. Penicillium annulatum (CBS 135126T) characteristically produces colonies on Czapek yeast autolysate (CYA) and yeast extract sucrose (YES) agar that sporulate in annular patterns and grow faster on CYA at 37 °C than those of closely related species, except for the faster growing P. rolfsii. Penicillium curticaule (CBS 135128T) most closely resembles P. raperi, but grows more restrictedly on CYA at 37 °C and produces shorter phialides. Penicillium ortum (CBS135668T) grows faster on CYA at 37 °C than P. cremeogriseum, its closest relative. Penicillium malacosphaerulum (CBS 135120T) produces cleisthothecia that give colonies on most media a yellowish straw color, similar to those of P. reticulisporum. However, faster growth on CYA at 37 °C distinguishes the new species from P. reticulisporum.

Published
2015

44. New Resinogaleaspecies from Araucaria araucanaresin in Chile and reclassification of the genus in the Cryptocaliciomycetidae

Author

Balocchi, Felipe, Barnes, Irene, Wingfield, Michael J., Ahumada, Rodrigo, and Visagie, Cobus M.

Abstract

Araucaria araucanais an ancient conifer, native to the mountain ranges in Chile and Argentina. These trees host a large number of organisms, mainly insects, strongly or even exclusively associated with them. The recent emergence of a novel canker disease on A. araucanahas emphasised the importance of fungi associated with these iconic trees and has resulted in the discovery of various new species. In this study, we considered the identity of an unknown calicioid fungus consistently found on resin on the branches of A. araucana. Preliminary phylogenetic analyses placed isolates in the recently described sub-class Cryptocaliciomycetidae, closest to Cryptocalicium blascoi. However, the morphology of the ascomata and its occurrence in a unique niche suggested that the closest relative could be Resinogalea humboldtensis(Bruceomycetaceae, incertae sedis), a fungus with similar sporing structures found on resin of Araucaria humboldtensisin New Caledonia. There are no living cultures or sequence data available for either R. humboldtensisor its supposed closest relative, Bruceomyces castoris,precluding sequence-based comparisons. Morphological comparisons of the sporing structures on A. araucanaconfirmed that the ascomatal morphology of our unknown calicioid fungus and R. humboldtensisare almost identical and resemble each other more so than B. castorisor Cr. blascoi. A phylogenetic analysis based on the small subunit (SSU), internal transcribed spacer (ITS) and large subunit (LSU) rDNA regions resolved our strains into two clades with Cr. blascoias its closest relative. Further analyses applying the Genealogical Concordance Phylogenetic Species Recognition (GCPSR) based on ITS, mini chromosome maintenance protein complex (MCM7), RNA polymerase II second largest subunit (RPB2) and translation elongation factor 1-alpha (TEF) gene regions, confirmed that strains represent two new species. Based on our morphological observations and phylogenetic analyses, we introduce two new Resinogaleaspecies, R. araucanaand R. tapulicola,and reclassify the genus in the subclass Cryptocaliciomycetidae.

Published
2023
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46. Draft genome sequences of Armillaria fuscipes, Ceratocystiopsis minuta, Ceratocystis adiposa, Endoconidiophora laricicola, E. polonica and Penicillium freii DAOMC 242723.

Author

Wingfield, Brenda D., Ambler, Jon M., Coetzee, Martin P. A., de Beer, Z. Wilhelm, Duong, Tuan A., Joubert, Fourie, Hammerbacher, Almuth, McTaggart, Alistair R., Naidoo, Kershney, Nguyen, Hai D. T., Ponomareva, Ekaterina, Santana, Quentin S., Seifert, Keith A., Steenkamp, Emma T., Trollip, Conrad, van der Nest, Magriet A., Visagie, Cobus M., Wilken, P. Markus, Wingfield, Michael J., and Yilmaz, Neriman

Subjects
BACTERIAL genetics, ARMILLARIA, CERATOCYSTIOPSIS
Abstract

The genomes of Armillaria fuscipes, Ceratocystiopsis minuta, Ceratocystis adiposa, Endoconidiophora laricicola, E. polonica, and Penicillium freii DAOMC 242723 are presented in this genome announcement. These six genomes are from plant pathogens and otherwise economically important fungal species. The genome sizes range from 21 Mb in the case of Ceratocystiopsis minuta to 58 Mb for the basidiomycete Armillaria fuscipes. These genomes include the irst reports of genomes for the genus Endoconidiophora. The availability of these genome data will provide opportunities to resolve longstanding questions regarding the taxonomy of species in these genera. In addition these genome sequences through comparative studies with closely related organisms will increase our understanding of how these pathogens cause disease. [ABSTRACT FROM AUTHOR]

Published
2016
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47. Response to Pitt & Taylor 2016: Conservation of Aspergilluswith A. nigeras the conserved type is unnecessary and potentially disruptive

Author

Samson, Robert A., Hubka, Vit, Varga, Janos, Houbraken, Jos, Hong, Seung-Beom, Klaassen, Corné H.W., Perrone, Giancarlo, Seifert, Keith A., Magistá, Donato, Visagie, Cobus M., Kocsubé, Sandor, Szigeti, Geongi, Yaguchi, Takashi, Peterson, Stephen W., Frisvad, Jens C., Prado, Jefferson, Lendemer, James, and Tripp, Erin

Abstract

Aspergillusis a diverse fungal genus containing many species of great agricultural, biotechnological and medical relevance. Because of the broad use of the genus name in diverse disciplines, and the importance of individual species names in these areas, the taxonomy and nomenclature of Aspergillusshould remain stable. A formal proposal to change the generic type from A. glaucusto A. nigerwas recently published. Here we present arguments against this proposal. We assert that it should be rejected because it will not ensure nomenclatural stability for Aspergillus, and will put the names of several important species, such as A. flavus, A. fumigatusand A. oryzaeat risk of being classified in different genera and being lost.

Published
2017
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