38 results on '"Simon C, Drew"'
Search Results
2. Ternary Cu2+ Complexes of Human Serum Albumin and Glycyl-<scp>l</scp>-histidyl-<scp>l</scp>-lysine
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Simon C. Drew, Karolina Bossak-Ahmad, Tomasz Frączyk, and Wojciech Bal
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Inorganic Chemistry ,Stereochemistry ,Chemistry ,Lysine ,medicine ,Physical and Theoretical Chemistry ,Ternary operation ,Human serum albumin ,Ternary complex ,Binding constant ,medicine.drug - Abstract
Human serum albumin (HSA) and the growth factor glycyl-l-histidyl-l-lysine (GHK) bind Cu2+ as part of their normal functions. GHK is found at its highest concentration in the albumin-rich fraction of plasma, leading to speculation that HSA and GHK form a ternary Cu2+ complex. Although preliminary evidence was presented 40 years ago, the structure and stability of such a complex have remained elusive. Here, we show that two ternary Cu(GHK)NImHSA complexes are formed between GHK and the imino nitrogen (NIm) of His side chains of HSA. We identified His3 as one site of ternary complex formation (conditional binding constant cKCu(GHK)NImHis3Cu(GHK) = 2900 M-1 at pH 7.4), with the second site (cKCu(GHK)NImHisXCu(GHK) = 1700 M-1) likely being supplied by either His128 or His510. Together with the established role of HSA as a molecular shuttle in the blood, these complexes may aid the transport of the exchangeable Cu2+ pool and the functional form of GHK.
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- 2021
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3. Intermediate Cu(II)-Thiolate Species in the Reduction of Cu(II)GHK by Glutathione: A Handy Chelate for Biological Cu(II) Reduction
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Tomasz Frączyk, Simon C. Drew, Kosma Szutkowski, Wojciech Wróblewski, Iwona Ufnalska, Igor Zhukov, Wojciech Bal, and Urszula E. Wawrzyniak
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Reaction mechanism ,Molecular Structure ,chemistry.chemical_element ,Glutathione ,Reaction intermediate ,Tripeptide ,Copper ,Medicinal chemistry ,Redox ,Article ,Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,Coordination Complexes ,Humans ,Chelation ,Sulfhydryl Compounds ,Physical and Theoretical Chemistry ,Cyclic voltammetry ,Oligopeptides ,Oxidation-Reduction - Abstract
Gly-His-Lys (GHK) is a tripeptide present in the human bloodstream that exhibits a number of biological functions. Its activity is attributed to the copper-complexed form, Cu(II)GHK. Little is known, however, about the molecular aspects of the mechanism of its action. Here, we examined the reaction of Cu(II)GHK with reduced glutathione (GSH), which is the strongest reductant naturally occurring in human plasma. Spectroscopic techniques (UV–vis, CD, EPR, and NMR) and cyclic voltammetry helped unravel the reaction mechanism. The impact of temperature, GSH concentration, oxygen access, and the presence of ternary ligands on the reaction were explored. The transient GSH-Cu(II)GHK complex was found to be an important reaction intermediate. The kinetic and redox properties of this complex, including tuning of the reduction rate by ternary ligands, suggest that it may provide a missing link in copper trafficking as a precursor of Cu(I) ions, for example, for their acquisition by the CTR1 cellular copper transporter., Gly-His-Lys (GHK) is a human bioactive tripeptide thought to be activated by Cu(II) binding, but little is known about the molecular aspects of its action. UV−vis, circular dichroism (CD), EPR, and NMR spectroscopies, and cyclic voltammetry were used to examine the reduction of Cu(II)GHK with glutathione (GSH), the most abundant biological thiol. A semistable GSH-Cu(II)GHK reaction intermediate was discovered, with properties suitable for delivering Cu(I) to biological transport proteins.
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- 2021
4. The Case for Abandoning Therapeutic Chelation of Copper Ions in Alzheimer's Disease
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Simon C. Drew
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Alzheimer's disease ,β-amyloid ,copper ,bioinorganic chemistry ,N-truncation ,chelator ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The “therapeutic chelation” approach to treating Alzheimer's disease (AD) evolved from the metals hypothesis, with the premise that small molecules can be designed to prevent transition metal-induced amyloid deposition and oxidative stress within the AD brain. Over more than 20 years, countless in vitro studies have been devoted to characterizing metal binding, its effect on Aβ aggregation, ROS production, and in vitro toxicity. Despite a lack of evidence for any clinical benefit, the conjecture that therapeutic chelation is an effective approach for treating AD remains widespread. Here, the author plays the devil's advocate, questioning the experimental evidence, the dogma, and the value of therapeutic chelation, with a major focus on copper ions.
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- 2017
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5. Chelator PBT2 Forms a Ternary Cu2+ Complex with β-Amyloid That Has High Stability but Low Specificity
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Simon C. Drew
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Inorganic Chemistry ,Organic Chemistry ,General Medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Catalysis ,Computer Science Applications - Abstract
The metal chelator PBT2 (5,7-dichloro-2-[(dimethylamino)methyl]-8-hydroxyquinoline) acts as a terdentate ligand capable of forming binary and ternary Cu2+ complexes. It was clinically trialed as an Alzheimer’s disease (AD) therapy but failed to progress beyond phase II. The β-amyloid (Aβ) peptide associated with AD was recently concluded to form a unique Cu(Aβ) complex that is inaccessible to PBT2. Herein, it is shown that the species ascribed to this binary Cu(Aβ) complex in fact corresponds to ternary Cu(PBT2)NImAβ complexes formed by the anchoring of Cu(PBT2) on imine nitrogen (NIm) donors of His side chains. The primary site of ternary complex formation is His6, with a conditional stepwise formation constant at pH 7.4 (Kc [M−1]) of logKc = 6.4 ± 0.1, and a second site is supplied by His13 or His14 (logKc = 4.4 ± 0.1). The stability of Cu(PBT2)NImH13/14 is comparable with that of the simplest Cu(PBT2)NIm complexes involving the NIm coordination of free imidazole (logKc = 4.22 ± 0.09) and histamine (logKc = 4.00 ± 0.05). The 100-fold larger formation constant for Cu(PBT2)NImH6 indicates that outer-sphere ligand–peptide interactions strongly stabilize its structure. Despite the relatively high stability of Cu(PBT2)NImH6, PBT2 is a promiscuous chelator capable of forming a ternary Cu(PBT2)NIm complex with any ligand containing an NIm donor. These ligands include histamine, L-His, and ubiquitous His side chains of peptides and proteins in the extracellular milieu, whose combined effect should outweigh that of a single Cu(PBT2)NImH6 complex regardless of its stability. We therefore conclude that PBT2 is capable of accessing Cu(Aβ) complexes with high stability but low specificity. The results have implications for future AD therapeutic strategies and understanding the role of PBT2 in the bulk transport of transition metal ions. Given the repurposing of PBT2 as a drug for breaking antibiotic resistance, ternary Cu(PBT2)NIm and analogous Zn(PBT2)NIm complexes may be relevant to its antimicrobial properties.
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- 2023
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6. Aldehyde Production as a Calibrant of Ultrasonic Power Delivery During Protein Misfolding Cyclic Amplification
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Simon C. Drew
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Aldehydes ,Protein Folding ,0303 health sciences ,Chemistry ,Radical ,Sonication ,030302 biochemistry & molecular biology ,Organic Chemistry ,Substrate (chemistry) ,Bioengineering ,Biochemistry ,Prion Proteins ,Analytical Chemistry ,Sonochemistry ,Mice ,03 medical and health sciences ,Ultrasonic Waves ,Nucleic acid ,Biophysics ,Animals ,Protein Misfolding Cyclic Amplification ,Bioorganic chemistry ,Protein folding ,030304 developmental biology - Abstract
The protein misfolding cyclic amplification (PMCA) technique employs repeated cycles of incubation and sonication to amplify minute amounts of misfolded protein conformers. Spontaneous (de novo) prion formation and ultrasonic power level represent two potentially interrelated sources of variation that frustrate attempts to replicate results from different laboratories. We previously established that water splitting during PMCA provides a radical-rich environment leading to oxidative damage to substrate molecules as well as the polypropylene PCR tubes used for sample containment. Here it is shown that the cross-linking agent formaldehyde is generated from buffer ions that are attacked by hydroxyl radicals. In addition, free radical damage to protein, nucleic acid, lipid, and detergent molecules produces a substantial concentration of aldehydes (hundreds of micromolar). The measurement of aldehydes using the Hantzsch reaction provides a reliable and inexpensive method for measuring the power delivered to individual PMCA samples, and for calibrating the power output characteristics of an individual sonicator. The proposed method may also be used to better account for inter-assay and inter-laboratory variation in prion replication and de novo prion generation, the latter of which may correlate with aldehyde-induced cross-linking of substrate molecules.
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- 2020
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7. Ternary Cu
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Karolina, Bossak-Ahmad, Wojciech, Bal, Tomasz, Frączyk, and Simon C, Drew
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Histones ,Coordination Complexes ,Lysine ,Glycine ,Humans ,Serum Albumin, Human ,Copper - Abstract
Human serum albumin (HSA) and the growth factor glycyl-l-histidyl-l-lysine (GHK) bind Cu
- Published
- 2021
8. Stable radical content and anti-radical activity of roasted Arabica coffee: from in-tact bean to coffee brew.
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Gordon J Troup, Luciano Navarini, Furio Suggi Liverani, and Simon C Drew
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Medicine ,Science - Abstract
The roasting of coffee beans generates stable radicals within melanoidins produced by non-enzymatic browning. Roasting coffee beans has further been suggested to increase the antioxidant (AO) capacity of coffee brews. Herein, we have characterized the radical content and AO capacity of brews prepared from Coffea arabica beans sourced directly from an industrial roasting plant. In-tact beans exhibited electron paramagnetic resonance signals arising from Fe3+, Mn2+ and at least three distinct stable radicals as a function of roasting time, whose intensity changed upon grinding and ageing. In coffee brews, the roasting-induced radicals were harboured within the high molecular weight (> 3 kD) melanoidin-containing fraction at a concentration of 15 nM and was associated with aromatic groups within the melanoidins. The low molecular weight (< 3 kD) fraction exhibited the highest AO capacity using DPPH as an oxidant. The AO activity was not mediated by the stable radicals or by metal complexes within the brew. While other non-AO functions of the roasting-induced radical and metal complexes may be possible in vivo, we confirm that the in vitro antiradical activity of brewed coffee is dominated by low molecular weight phenolic compounds.
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- 2015
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9. The Prion Protein N1 and N2 Cleavage Fragments Bind to Phosphatidylserine and Phosphatidic Acid; Relevance to Stress-Protection Responses.
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Cathryn L Haigh, Carolin Tumpach, Simon C Drew, and Steven J Collins
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Medicine ,Science - Abstract
Internal cleavage of the cellular prion protein generates two well characterised N-terminal fragments, N1 and N2. These fragments have been shown to bind to anionic phospholipids at low pH. We sought to investigate binding with other lipid moieties and queried how such interactions could be relevant to the cellular functions of these fragments. Both N1 and N2 bound phosphatidylserine (PS), as previously reported, and a further interaction with phosphatidic acid (PA) was also identified. The specificity of this interaction required the N-terminus, especially the proline motif within the basic amino acids at the N-terminus, together with the copper-binding region (unrelated to copper saturation). Previously, the fragments have been shown to be protective against cellular stresses. In the current study, serum deprivation was used to induce changes in the cellular lipid environment, including externalisation of plasma membrane PS and increased cellular levels of PA. When copper-saturated, N2 could reverse these changes, but N1 could not, suggesting that direct binding of N2 to cellular lipids may be part of the mechanism by which this peptide signals its protective response.
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- 2015
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10. The Sub‐picomolar Cu2+Dissociation Constant of Human Serum Albumin
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Tomasz Frączyk, Simon C. Drew, Karolina Bossak-Ahmad, and Wojciech Bal
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chemistry.chemical_classification ,Circular dichroism ,biology ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Serum albumin ,Tripeptide ,010402 general chemistry ,Ligand (biochemistry) ,Human serum albumin ,01 natural sciences ,Biochemistry ,Binding constant ,0104 chemical sciences ,Divalent ,body regions ,Dissociation constant ,Crystallography ,medicine ,biology.protein ,Molecular Medicine ,Molecular Biology ,medicine.drug - Abstract
The apparent affinity of human serum albumin (HSA) for divalent copper has long been the subject of great interest, due to its presumed role as the major Cu2+ -binding ligand in blood and cerebrospinal fluid. Using a combination of electronic absorption, circular dichroism and room-temperature electron paramagnetic resonance spectroscopies, together with potentiometric titrations, we competed the tripeptide GGH against HSA to reveal a conditional binding constant of log c K Cu Cu ( HSA ) =13.02±0.05 at pH 7.4. This rigorously determined value of the Cu2+ affinity has important implications for understanding the extracellular distribution of copper.
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- 2019
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11. Interplay between Copper, Neprilysin, and N-Truncation of β-Amyloid
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Tomasz Frączyk, Wojciech Bal, Mariusz Mital, and Simon C. Drew
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inorganic chemicals ,0301 basic medicine ,Proteolysis ,Peptide ,Divalent ,Inorganic Chemistry ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Insulin-degrading enzyme ,Humans ,Physical and Theoretical Chemistry ,Neprilysin ,Fluorescent Dyes ,chemistry.chemical_classification ,Oligopeptide ,Amyloid beta-Peptides ,medicine.diagnostic_test ,fungi ,Peptide Fragments ,Recombinant Proteins ,Endopeptidase ,Zinc ,030104 developmental biology ,Biochemistry ,chemistry ,Oligopeptides ,Copper ,030217 neurology & neurosurgery ,Homeostasis - Abstract
Sporadic Alzheimer's disease (AD) is associated with an inefficient clearance of the β-amyloid (Aβ) peptide from the central nervous system. The protein levels and activity of the Zn2+-dependent endopeptidase neprilysin (NEP) inversely correlate with brain Aβ levels during aging and in AD. The present study considered the ability of Cu2+ ions to inhibit human recombinant NEP and the role for NEP in generating N-truncated Aβ fragments with high-affinity Cu2+ binding motifs that can prevent this inhibition. Divalent copper noncompetitively inhibited NEP ( Ki = 1.0 μM), while proteolysis of Aβ yielded the soluble, Aβ4-9 fragment that can bind Cu2+ with femtomolar affinity at pH 7.4. This provides Aβ4-9 with the potential to act as a Cu2+ carrier and to mediate its own production by preventing NEP inhibition. Enzyme inhibition at high Zn2+ concentrations ( Ki = 20 μM) further suggests a mechanism for modulating NEP activity, Aβ4-9 production, and Cu2+ homeostasis.
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- 2018
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12. The Cu(II) affinity of the N-terminus of human copper transporter CTR1: Comparison of human and mouse sequences
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Ewelina Stefaniak, Simon C. Drew, Karolina Bossak, Dawid Płonka, Wojciech Bal, and Arkadiusz Bonna
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0301 basic medicine ,Stereochemistry ,chemistry.chemical_element ,Peptide ,Tripeptide ,Plasma protein binding ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Inorganic Chemistry ,Mice ,03 medical and health sciences ,medicine ,Animals ,Humans ,Binding site ,Cation Transport Proteins ,Copper Transporter 1 ,chemistry.chemical_classification ,Binding Sites ,Chemistry ,fungi ,Human serum albumin ,Copper ,0104 chemical sciences ,Transport protein ,N-terminus ,030104 developmental biology ,Protein Binding ,medicine.drug - Abstract
Copper Transporter 1 (CTR1) is a homotrimeric membrane protein providing the main route of copper transport into eukaryotic cells from the extracellular milieu. Its N-terminal extracellular domain, rich in His and Met residues, is considered responsible for directing copper into the transmembrane channel. Most of vertebrate CTR1 proteins contain the His residue in position three from N-terminus, creating a well-known Amino Terminal Cu(II)- and Ni(II)-Binding (ATCUN) site. CTR1 from humans, primates and many other species contains the Met-Asp-His (MDH) sequence, while some rodents including mouse have the Met-Asn-His (MNH) N-terminal sequence. CTR1 is thought to collect Cu(II) ions from blood copper transport proteins, including albumin, but previous reports indicated that the affinity of N-terminal peptide/domain of CTR1 is significantly lower than that of albumin, casting serious doubt on this aspect of CTR1 function. Using potentiometry and spectroscopic techniques we demonstrated that MDH-amide, a tripeptide model of human CTR1 N-terminus, binds Cu(II) with K of 1.3 × 1013 M−1 at pH 7.4, ~13 times stronger than Human Serum Albumin (HSA), and MNH-amide is even stronger, K of 3.2 × 1014 M−1 at pH 7.4. These results indicate that the N-terminus of CTR1 may serve as intermediate binding site during Cu(II) transfer from blood copper carriers to the transporter. MDH-amide, but not MNH-amide also forms a low abundance complex with non-ATCUN coordination involving the Met amine, His imidazole and Asp carboxylate. This species might assist Cu(II) relay down the peptide chain or its reduction to Cu(I), both steps necessary for the CTR1 function.
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- 2018
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13. Prion protein cleavage fragments regulate adult neural stem cell quiescence through redox modulation of mitochondrial fission and SOD2 expression
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Steven J. Collins, Simon C. Drew, Carolin Tumpach, Bradley R. Groveman, and Cathryn L. Haigh
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0301 basic medicine ,Cellular differentiation ,SOD2 ,Mice, Transgenic ,DRP1 ,Mitochondrion ,Mitochondrial Dynamics ,Prion Proteins ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Nox2 ,Neural Stem Cells ,Superoxides ,Animals ,Molecular Biology ,Cells, Cultured ,reproductive and urinary physiology ,Cell Proliferation ,Mice, Knockout ,Pharmacology ,NADPH oxidase ,Superoxide Dismutase ,Chemistry ,Neurogenesis ,N2 ,N1 ,Cell Differentiation ,Cell Biology ,Peptide Fragments ,Neural stem cell ,Mitochondria ,nervous system diseases ,Cell biology ,Adult Stem Cells ,030104 developmental biology ,nervous system ,Molecular Medicine ,Original Article ,RNA Interference ,Mitochondrial fission ,Reactive oxygen species ,Oxidation-Reduction ,030217 neurology & neurosurgery ,Intracellular ,Adult stem cell - Abstract
Neurogenesis continues in the post-developmental brain throughout life. The ability to stimulate the production of new neurones requires both quiescent and actively proliferating pools of neural stem cells (NSCs). Actively proliferating NSCs ensure that neurogenic demand can be met, whilst the quiescent pool makes certain NSC reserves do not become depleted. The processes preserving the NSC quiescent pool are only just beginning to be defined. Herein, we identify a switch between NSC proliferation and quiescence through changing intracellular redox signalling. We show that N-terminal post-translational cleavage products of the prion protein (PrP) induce a quiescent state, halting NSC cellular growth, migration, and neurite outgrowth. Quiescence is initiated by the PrP cleavage products through reducing intracellular levels of reactive oxygen species. First, inhibition of redox signalling results in increased mitochondrial fission, which rapidly signals quiescence. Thereafter, quiescence is maintained through downstream increases in the expression and activity of superoxide dismutase-2 that reduces mitochondrial superoxide. We further observe that PrP is predominantly cleaved in quiescent NSCs indicating a homeostatic role for this cascade. Our findings provide new insight into the regulation of NSC quiescence, which potentially could influence brain health throughout adult life. Electronic supplementary material The online version of this article (10.1007/s00018-018-2790-3) contains supplementary material, which is available to authorized users.
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- 2018
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14. The N-terminal 14-mer model peptide of human Ctr1 can collect Cu(<scp>ii</scp>) from albumin. Implications for copper uptake by Ctr1
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Karolina Bossak-Ahmad, M. Jake Pushie, Kathryn L. Haas, Wojciech Bal, Peter Faller, Nina E. Wezynfeld, Ewelina Stefaniak, Dawid Płonka, and Simon C. Drew
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Models, Molecular ,Stereochemistry ,Biophysics ,Serum albumin ,chemistry.chemical_element ,Serum Albumin, Human ,Peptide ,Plasma protein binding ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Biomaterials ,medicine ,Humans ,Binding site ,Cation Transport Proteins ,Copper Transporter 1 ,chemistry.chemical_classification ,Binding Sites ,biology ,010405 organic chemistry ,Metals and Alloys ,Albumin ,Biological Transport ,Human serum albumin ,Copper ,Peptide Fragments ,0104 chemical sciences ,Transport protein ,chemistry ,Chemistry (miscellaneous) ,biology.protein ,Protein Binding ,medicine.drug - Abstract
Human cells acquire copper primarily via the copper transporter 1 protein, hCtr1. We demonstrate that at extracellular pH 7.4 CuII is bound to the model peptide hCtr11-14via an ATCUN motif and such complexes are strong enough to collect CuII from albumin, supporting the potential physiological role of CuII binding to hCtr1.
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- 2018
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15. Electron paramagnetic resonance microscopy using spins in diamond under ambient conditions
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Simon C. Drew, Steven Petrou, Liam T. Hall, Paul S. Donnelly, Paul Mulvaney, David Simpson, Robert G. Ryan, Lloyd C. L. Hollenberg, and Evgeniy Panchenko
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Materials science ,Science ,General Physics and Astronomy ,02 engineering and technology ,01 natural sciences ,Molecular physics ,Article ,General Biochemistry, Genetics and Molecular Biology ,law.invention ,Paramagnetism ,law ,0103 physical sciences ,lcsh:Science ,010306 general physics ,Spin (physics) ,Electron paramagnetic resonance ,Spectroscopy ,Electron nuclear double resonance ,Multidisciplinary ,Condensed matter physics ,Spins ,Pulsed EPR ,Resonance ,General Chemistry ,021001 nanoscience & nanotechnology ,lcsh:Q ,Condensed Matter::Strongly Correlated Electrons ,0210 nano-technology - Abstract
Magnetic resonance spectroscopy is one of the most important tools in chemical and bio-medical research. However, sensitivity limitations typically restrict imaging resolution to ~ 10 µm. Here we bring quantum control to the detection of chemical systems to demonstrate high-resolution electron spin imaging using the quantum properties of an array of nitrogen-vacancy centres in diamond. Our electron paramagnetic resonance microscope selectively images electronic spin species by precisely tuning a magnetic field to bring the quantum probes into resonance with the external target spins. This provides diffraction limited spatial resolution of the target spin species over a field of view of 50 × 50 µm2 with a spin sensitivity of 104 spins per voxel or ∼100 zmol. The ability to perform spectroscopy and dynamically monitor spin-dependent redox reactions at these scales enables the development of electron spin resonance and zepto-chemistry in the physical and life sciences., Electron paramagnetic resonance spectroscopy has important scientific and medical uses but improving the resolution of conventional methods requires cryogenic, vacuum environments. Simpson et al. show nitrogen vacancy centres can be used for sub-micronmetre imaging with improved sensitivity in ambient conditions.
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- 2017
16. The Sub-picomolar Cu
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Karolina, Bossak-Ahmad, Tomasz, Frączyk, Wojciech, Bal, and Simon C, Drew
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Humans ,Serum Albumin, Human ,Copper - Abstract
The apparent affinity of human serum albumin (HSA) for divalent copper has long been the subject of great interest, due to its presumed role as the major Cu
- Published
- 2019
17. A 2-Substituted 8-Hydroxyquinoline Stimulates Neural Stem Cell Proliferation by Modulating ROS Signalling
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Carolin Tumpach, Simon C. Drew, Cathryn L. Haigh, and Steven J. Collins
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0301 basic medicine ,Neurite ,Blotting, Western ,Biophysics ,Biochemistry ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Neural Stem Cells ,Neurosphere ,Animals ,Cells, Cultured ,Cell Proliferation ,Mice, Inbred BALB C ,NADPH oxidase ,biology ,Cell growth ,Neurogenesis ,NADPH Oxidases ,Cell Biology ,General Medicine ,Flow Cytometry ,Oxyquinoline ,Hedgehog signaling pathway ,Neural stem cell ,3. Good health ,Cell biology ,Ki-67 Antigen ,030104 developmental biology ,Microscopy, Fluorescence ,biology.protein ,Signal transduction ,Reactive Oxygen Species ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
Eight-hydroxyquinolines (8HQs) are a class of compounds that have been identified as potential therapeutics for a number of neurodegenerative diseases. Understanding the influence of structural modifications to the 8HQ scaffold on cellular behaviour will aid the identification of compounds that might be effective in treating dementias. In this study, we describe the action of 2-[(dimethylamino)methyl]-8-hydroxyquinoline (DMAMQ) on adult murine neural stem cells (NSCs) cultured in vitro. Treatment of NSCs with DMAMQ resulted in enhanced self-renewal and increased neurite outgrowth. Concurrent with the positive growth effects was an increase in intracellular reactive oxygen species, with the growth being inhibited by inactivation of the NADPH oxidase (Nox) enzyme family. Our results indicate that DMAMQ can stimulate neurogenesis via the Nox signalling pathway, which may provide therapeutic benefit in treating dementias of various types by replenishing neurones using the brain's own reserves. The narrow concentration range over which these effects were observed, however, suggests that there may exist only a small therapeutic window for neuro-regenerative applications.
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- 2016
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18. Resistance of Cu(Aβ4 – 16) to Copper Capture by Metallothionein‐3 Supports a Function for the Aβ4 – 42 Peptide as a Synaptic Cu II Scavenger
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Simon C. Drew, Ewelina Stefaniak, Kinga Stachucy, Agnieszka Drozd, Dawid Płonka, Wojciech Bal, Nina E. Wezynfeld, and Artur Krężel
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0301 basic medicine ,Antioxidant ,Synaptic cleft ,Amyloid beta ,medicine.medical_treatment ,chemistry.chemical_element ,Nerve Tissue Proteins ,Peptide ,010402 general chemistry ,01 natural sciences ,Neuroprotection ,Catalysis ,03 medical and health sciences ,Metalloprotein ,medicine ,Metallothionein ,chemistry.chemical_classification ,Amyloid beta-Peptides ,Molecular Structure ,biology ,010405 organic chemistry ,Chemistry ,Free Radical Scavengers ,General Medicine ,General Chemistry ,Copper ,Metallothionein 3 ,0104 chemical sciences ,Zinc ,030104 developmental biology ,Biochemistry ,biology.protein - Abstract
Aβ4-42 is a major species of Aβ peptide in the brains of both healthy individuals and those affected by Alzheimer's disease. It has recently been demonstrated to bind Cu(II) with an affinity approximately 3000 times higher than the commonly studied Aβ1-42 and Aβ1-40 peptides, which are implicated in the pathogenesis of Alzheimer's disease. Metallothionein-3, a protein considered to orchestrate copper and zinc metabolism in the brain and provide antioxidant protection, was shown to extract Cu(II) from Aβ1-40 when acting in its native Zn7 MT-3 form. This reaction is assumed to underlie the neuroprotective effect of Zn7 MT-3 against Aβ toxicity. In this work, we used the truncated model peptides Aβ1-16 and Aβ4-16 to demonstrate that the high-affinity Cu(II) complex of Aβ4-16 is resistant to Zn7 MT-3 reactivity. This indicates that the analogous complex of the full-length peptide Cu(Aβ4-42) will not yield copper to MT-3 in the brain, thus supporting the concept of a physiological role for Aβ4-42 as a Cu(II) scavenger in the synaptic cleft.
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- 2016
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19. Probing the quaternary structure of metal-bridged peptide oligomers
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Simon C. Drew
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0301 basic medicine ,Macromolecular Substances ,Stereochemistry ,Peptide ,010402 general chemistry ,Antiparallel (biochemistry) ,01 natural sciences ,Biochemistry ,law.invention ,Divalent ,Inorganic Chemistry ,Metal ,03 medical and health sciences ,chemistry.chemical_compound ,law ,Protein Structure, Quaternary ,Electron paramagnetic resonance ,chemistry.chemical_classification ,Chemistry ,Electron Spin Resonance Spectroscopy ,0104 chemical sciences ,030104 developmental biology ,Monomer ,Metals ,visual_art ,visual_art.visual_art_medium ,Protein quaternary structure ,Peptides ,Copper ,Stoichiometry ,Protein Binding - Abstract
The oligomerisation of many proteins and peptides is known to be influenced by the binding of transition metal ions such as divalent copper. To investigate the oligomeric state of model peptides related to the N-terminus of α-synuclein (αSyn) in the presence of Cu(II), electron paramagnetic resonance (EPR) spectroscopy and isotopic labelling were recently used to conclude that Cu(II) occupies N-terminal bridging positions within closed-chain αSyn dimers and trimers with a Cu/peptide stoichiometry of 1:1. Herein, a statistical correction is identified and the consequences are evaluated. The analysis reveals that αSyn forms Cu-bridged antiparallel dimers and closed-chain trimers that coexist with Cu(II)-bound monomers (including a "macrochelate") and, depending on metal stoichiometry and protein environment, with open-chain Cu-bridged oligomers and heterodimers. The results demonstrate that the Cu(II) ion can be exploited as a probe of protein quaternary structure, with the potential to delineate heterogeneous oligomeric populations.
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- 2016
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20. Correction to: Aldehyde Production as a Calibrant of Ultrasonic Power Delivery During Protein Misfolding Cyclic Amplification
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Simon C. Drew
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chemistry.chemical_classification ,chemistry ,Organic Chemistry ,Bioorganic chemistry ,Protein Misfolding Cyclic Amplification ,Bioengineering ,Ultrasonic sensor ,Biochemistry ,Aldehyde ,Combinatorial chemistry ,Analytical Chemistry - Published
- 2021
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21. The Palladium(II) Complex of Aβ4−16 as Suitable Model for Structural Studies of Biorelevant Copper(II) Complexes of N-Truncated Beta-Amyloids
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Tomasz Frączyk, Mariusz Mital, Piotr Skrobecki, Wojciech Bal, Jarosław Poznański, Kosma Szutkowski, Simon C. Drew, Igor Zhukov, and Karolina Bossak-Ahmad
- Subjects
Models, Molecular ,Magnetic Resonance Spectroscopy ,Palladium(II) ,Amino Acid Motifs ,Molecular Conformation ,chemistry.chemical_element ,Peptide ,010402 general chemistry ,01 natural sciences ,Article ,Catalysis ,Supramolecular assembly ,lcsh:Chemistry ,Inorganic Chemistry ,Structure-Activity Relationship ,NMR spectroscopy ,Coordination Complexes ,Cations ,Aβ peptide ,Humans ,Chelation ,Physical and Theoretical Chemistry ,Isostructural ,lcsh:QH301-705.5 ,Molecular Biology ,Spectroscopy ,chemistry.chemical_classification ,Amyloid beta-Peptides ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,General Medicine ,Nuclear magnetic resonance spectroscopy ,Models, Theoretical ,ATCUN motif ,0104 chemical sciences ,Computer Science Applications ,Solutions ,Crystallography ,lcsh:Biology (General) ,lcsh:QD1-999 ,13C relaxation ,Alzheimer’s disease ,Two-dimensional nuclear magnetic resonance spectroscopy ,Copper ,Palladium ,Heteronuclear single quantum coherence spectroscopy - Abstract
The A&beta, 4&minus, 42 peptide is a major beta-amyloid species in the human brain, forming toxic aggregates related to Alzheimer&rsquo, s Disease. It also strongly chelates Cu(II) at the N-terminal Phe-Arg-His ATCUN motif, as demonstrated in A&beta, 16 and A&beta, 9 model peptides. The resulting complex resists ROS generation and exchange processes and may help protect synapses from copper-related oxidative damage. Structural characterization of Cu(II)A&beta, x complexes by NMR would help elucidate their biological function, but is precluded by Cu(II) paramagneticism. Instead we used an isostructural diamagnetic Pd(II)-A&beta, 16 complex as a model. To avoid a kinetic trapping of Pd(II) in an inappropriate transient structure, we designed an appropriate pH-dependent synthetic procedure for ATCUN Pd(II)A&beta, 16, controlled by CD, fluorescence and ESI-MS. Its assignments and structure at pH 6.5 were obtained by TOCSY, NOESY, ROESY, 1H-13C HSQC and 1H-15N HSQC NMR experiments, for natural abundance 13C and 15N isotopes, aided by corresponding experiments for Pd(II)-Phe-Arg-His. The square-planar Pd(II)-ATCUN coordination was confirmed, with the rest of the peptide mostly unstructured. The diffusion rates of A&beta, 16, Pd(II)-A&beta, 16 and their mixture determined using PGSE-NMR experiment suggested that the Pd(II) complex forms a supramolecular assembly with the apopeptide. These results confirm that Pd(II) substitution enables NMR studies of structural aspects of Cu(II)-A&beta, complexes.
- Published
- 2020
- Full Text
- View/download PDF
22. Ternary Cu(II) Complex with GHK Peptide and Cis-Urocanic Acid as a Potential Physiologically Functional Copper Chelate
- Author
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Marta D Wiśniewska, Wojciech Bal, Tomasz Frączyk, Karolina Bossak-Ahmad, and Simon C. Drew
- Subjects
Serum ,Stereochemistry ,Peptide ,Tripeptide ,010402 general chemistry ,01 natural sciences ,Article ,ternary complex ,Catalysis ,lcsh:Chemistry ,Inorganic Chemistry ,chemistry.chemical_compound ,Humans ,Molecule ,Chelation ,Physical and Theoretical Chemistry ,lcsh:QH301-705.5 ,Molecular Biology ,Ternary complex ,Spectroscopy ,Histidine ,Chelating Agents ,chemistry.chemical_classification ,010405 organic chemistry ,Circular Dichroism ,Urocanic Acid ,Organic Chemistry ,Electron Spin Resonance Spectroscopy ,Imidazoles ,General Medicine ,Cis-Urocanic Acid ,0104 chemical sciences ,Computer Science Applications ,Urocanic acid ,lcsh:Biology (General) ,lcsh:QD1-999 ,chemistry ,imidazole ligands ,Protein Multimerization ,Oligopeptides ,Copper - Abstract
The tripeptide NH2&ndash, Gly&ndash, His&ndash, Lys&ndash, COOH (GHK), cis-urocanic acid (cis-UCA) and Cu(II) ions are physiological constituents of the human body and they co-occur (e.g., in the skin and the plasma). While GHK is known as Cu(II)-binding molecule, we found that urocanic acid also coordinates Cu(II) ions. Furthermore, both ligands create ternary Cu(II) complex being probably physiologically functional species. Regarding the natural concentrations of the studied molecules in some human tissues, together with the affinities reported here, we conclude that the ternary complex [GHK][Cu(II)][cis-urocanic acid] may be partly responsible for biological effects of GHK and urocanic acid described in the literature.
- Published
- 2020
- Full Text
- View/download PDF
23. Oligopeptides Generated by Neprilysin Degradation of β-Amyloid Have the Highest Cu(II) Affinity in the Whole Aβ Family
- Author
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Dawid Płonka, Karolina Bossak-Ahmad, Simon C. Drew, Wojciech Bal, and Mariusz Mital
- Subjects
Circular dichroism ,Stereochemistry ,Amino Acid Motifs ,Peptide ,010402 general chemistry ,01 natural sciences ,Inorganic Chemistry ,Coordination Complexes ,Amyloid precursor protein ,Peptide bond ,Molecule ,Chelation ,Physical and Theoretical Chemistry ,Neprilysin ,Chelating Agents ,chemistry.chemical_classification ,Oligopeptide ,Amyloid beta-Peptides ,biology ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Peptide Fragments ,0104 chemical sciences ,biology.protein ,Oligopeptides ,Copper - Abstract
The catabolism of β-amyloid (Aβ) is carried out by numerous endopeptidases including neprilysin, which hydrolyzes peptide bonds preceding positions 4, 10, and 12 to yield Aβ4-9 and a minor Aβ12- x species. Alternative processing of the amyloid precursor protein by β-secretase also generates the Aβ11- x species. All these peptides contain a Xxx-Yyy-His sequence, also known as an ATCUN or NTS motif, making them strong chelators of Cu(II) ions. We synthesized the corresponding peptides, Phe-Arg-His-Asp-Ser-Gly-OH (Aβ4-9), Glu-Val-His-His-Gln-Lys-am (Aβ11-16), Val-His-His-Gln-Lys-am (Aβ12-16), and pGlu-Val-His-His-Gln-Lys-am (pAβ11-16), and investigated their Cu(II) binding properties using potentiometry, and UV-vis, circular dichroism, and electron paramagnetic resonance spectroscopies. We found that the three peptides with unmodified N-termini formed square-planar Cu(II) complexes at pH 7.4 with analogous geometries but significantly varied Kd values of 6.6 fM (Aβ4-9), 9.5 fM (Aβ12-16), and 1.8 pM (Aβ11-16). Cyclization of the N-terminal Glu11 residue to the pyroglutamate species pAβ11-16 dramatically reduced the affinity (5.8 nM). The Cu(II) affinities of Aβ4-9 and Aβ12-16 are the highest among the Cu(II) complexes of Aβ peptides. Using fluorescence spectroscopy, we demonstrated that the Cu(II) exchange between the Phe-Arg-His and Val-His-His motifs is very slow, on the order of days. These results are discussed in terms of the relevance of Aβ4-9, a major Cu(II) binding Aβ fragment generated by neprilysin, as a possible Cu(II) carrier in the brain.
- Published
- 2018
24. Identification of the Binding Site of Apical Membrane Antigen 1 (AMA1) Inhibitors Using a Paramagnetic Probe
- Author
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Peter J. Scammells, Mansura Akter, Martin J. Scanlon, Simon C. Drew, Bankala Krishnarjuna, Geqing Wang, Raymond S. Norton, Nyssa Drinkwater, Sheena McGowan, Cael Debono, Shane M. Devine, and Christopher A. MacRaild
- Subjects
Models, Molecular ,Magnetic Resonance Spectroscopy ,Protozoan Proteins ,Peptide ,Antigens, Protozoan ,Plasma protein binding ,Crystallography, X-Ray ,Ligands ,01 natural sciences ,Biochemistry ,Structure-Activity Relationship ,parasitic diseases ,Drug Discovery ,Pyrroles ,Amino Acid Sequence ,General Pharmacology, Toxicology and Pharmaceutics ,Apical membrane antigen 1 ,Binding site ,Spin label ,Furans ,Peptide sequence ,Quinazolinones ,Pharmacology ,chemistry.chemical_classification ,Sulfonamides ,Binding Sites ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Cell Membrane ,Membrane Proteins ,Apical membrane ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Pyrimidines ,Molecular Probes ,Biophysics ,Molecular Medicine ,Pyrazoles ,Benzimidazoles ,Molecular probe ,Peptides ,Hydrophobic and Hydrophilic Interactions ,Protein Binding - Abstract
Apical membrane antigen 1 (AMA1) is essential for the invasion of host cells by malaria parasites. Several small-molecule ligands have been shown to bind to a conserved hydrophobic cleft in Plasmodium falciparum AMA1. However, a lack of detailed structural information on the binding pose of these molecules has hindered their further optimisation as inhibitors. We have developed a spin-labelled peptide based on RON2, the native binding partner of AMA1, to probe the binding sites of compounds on PfAMA1. The crystal structure of this peptide bound to PfAMA1 shows that it binds at one end of the hydrophobic groove, leaving much of the binding site unoccupied and allowing fragment hits to bind without interference. In paramagnetic relaxation enhancement (PRE)-based NMR screening, the 1 H relaxation rates of compounds binding close to the probe were enhanced. Compounds experienced different degrees of PRE as a result of their different orientations relative to the spin label while bound to AMA1. Thus, PRE-derived distance constraints can be used to identify binding sites and guide further hit optimisation.
- Published
- 2018
25. Structural Insight into Redox Dynamics of Copper Bound N-Truncated Amyloid-β Peptides from in Situ X-ray Absorption Spectroscopy
- Author
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Simon C. Drew, Stephen P. Best, Christopher T. Chantler, Victor A. Streltsov, and Ruwini S. K. Ekanayake
- Subjects
Models, Molecular ,Absorption spectroscopy ,Nitrogen ,Amitriptyline ,chemistry.chemical_element ,Peptide ,010402 general chemistry ,01 natural sciences ,Redox ,law.invention ,Inorganic Chemistry ,Cryobiology ,law ,Physical and Theoretical Chemistry ,Binding site ,Electron paramagnetic resonance ,chemistry.chemical_classification ,X-ray absorption spectroscopy ,Amyloid beta-Peptides ,Binding Sites ,010405 organic chemistry ,Ligand (biochemistry) ,Copper ,0104 chemical sciences ,Crystallography ,X-Ray Absorption Spectroscopy ,chemistry ,Oxidation-Reduction - Abstract
X-ray absorption spectroscopy of CuII amyloid-β peptide (Aβ) under in situ electrochemical control (XAS-EC) has allowed elucidation of the redox properties of CuII bound to truncated peptide forms. The Cu binding environment is significantly different for the Aβ1–16 and the N-truncated Aβ4–9, Aβ4–12, and Aβ4–16 (Aβ4–9/12/16) peptides, where the N-truncated sequence (F4R5H6) provides the high-affinity amino-terminal copper nickel (ATCUN) binding motif. Low temperature (ca. 10 K) XAS measurements show the adoption of identical CuII ATCUN-type binding sites (CuIIATCUN) by the first three amino acids (FRH) and a longer-range interaction modeled as an oxygen donor ligand, most likely water, to give a tetragonal pyramid geometry in the Aβ4–9/12/16 peptides not previously reported. Both XAS-EC and EPR measurements show that CuII:Aβ4–16 can be reduced at mildly reducing potentials, similar to that of CuII:Aβ1–16. Reduction of peptides lacking the H13H14 residues, CuII:Aβ4–9/12, require far more forcing conditions...
- Published
- 2018
26. Tuning the Redox Properties of Copper(II) Complexes with Amyloid-β Peptides
- Author
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Magdalena Z. Wiloch, Iwona Ufnalska, Simon C. Drew, Wojciech Wróblewski, Wojciech Bal, Urszula E. Wawrzyniak, and Arkadiusz Bonna
- Subjects
010405 organic chemistry ,Renewable Energy, Sustainability and the Environment ,Chemistry ,Inorganic chemistry ,chemistry.chemical_element ,010402 general chemistry ,Condensed Matter Physics ,01 natural sciences ,Combinatorial chemistry ,Redox ,Copper ,Amyloid β peptide ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Materials Chemistry ,Electrochemistry - Published
- 2016
- Full Text
- View/download PDF
27. Cavitation during the protein misfolding cyclic amplification (PMCA) method – The trigger for de novo prion generation?
- Author
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Cathryn L. Haigh and Simon C. Drew
- Subjects
Protein Folding ,Prions ,animal diseases ,Sonication ,Blotting, Western ,Biophysics ,Phospholipid ,Biochemistry ,Cofactor ,Mice ,chemistry.chemical_compound ,Animals ,Prion protein ,Molecular Biology ,Spin trapping ,biology ,Electron Spin Resonance Spectroscopy ,RNA ,Cell Biology ,nervous system diseases ,chemistry ,biology.protein ,Protein Misfolding Cyclic Amplification ,Protein folding ,Oxidation-Reduction - Abstract
The protein misfolding cyclic amplification (PMCA) technique has become a widely-adopted method for amplifying minute amounts of the infectious conformer of the prion protein (PrP). PMCA involves repeated cycles of 20 kHz sonication and incubation, during which the infectious conformer seeds the conversion of normally folded protein by a templating interaction. Recently, it has proved possible to create an infectious PrP conformer without the need for an infectious seed, by including RNA and the phospholipid POPG as essential cofactors during PMCA. The mechanism underpinning this de novo prion formation remains unknown. In this study, we first establish by spin trapping methods that cavitation bubbles formed during PMCA provide a radical-rich environment. Using a substrate preparation comparable to that employed in studies of de novo prion formation, we demonstrate by immuno-spin trapping that PrP- and RNA-centered radicals are generated during sonication, in addition to PrP-RNA cross-links. We further show that serial PMCA produces protease-resistant PrP that is oxidatively modified. We suggest a unique confluence of structural (membrane-mimetic hydrophobic/hydrophilic bubble interface) and chemical (ROS) effects underlie the phenomenon of de novo prion formation by PMCA, and that these effects have meaningful biological counterparts of possible relevance to spontaneous prion formation in vivo.
- Published
- 2015
- Full Text
- View/download PDF
28. α-Synuclein and β-Amyloid form a Bridged Copper Complex
- Author
-
Simon C. Drew
- Subjects
chemistry.chemical_classification ,Amyloid ,chemistry ,Stereochemistry ,Ligand ,Extracellular ,Chelation ,Protein folding ,Peptide ,Senile plaques ,Redox ,Atomic and Molecular Physics, and Optics - Abstract
The deposition of insoluble β-amyloid (Aβ) peptide into extracellular senile plaques is a pathological hallmark of Alzheimer’s disease. Fragmented α-synuclein (αSyn) and a relatively high concentration of Cu2+ ions are found within amyloid deposits. Both Aβ and αSyn bind Cu2+ with an apparent dissociation constant in the sub-nanomolar range at physiological pH, fuelling speculation that deleterious redox chemistry and metal-mediated protein misfolding may contribute to disease progression. Binary Cu(Aβ) and Cu(αSyn) complexes have been extensively studied, although the Cu2+ coordination of heterogeneous mixtures of Aβ and αSyn has yet to be characterised. This study used synthetic N-terminal fragments Aβ1–16 and αSyn1–56 to reveal a new Cu(αSyn)(Aβ) coordination mode anchored upon a 5,6-membered chelate supplied by Met1–Asp2 of αSyn, with the fourth equatorial ligand being supplied by a His side chain of Aβ.
- Published
- 2015
- Full Text
- View/download PDF
29. Interactions of α-Factor-1, a Yeast Pheromone, and Its Analogue with Copper(II) Ions and Low-Molecular-Weight Ligands Yield Very Stable Complexes
- Author
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Karolina Bossak, Arkadiusz Bonna, Simon C. Drew, Wojciech Bal, Mariusz Mital, and Jarosław Poznański
- Subjects
Protein Conformation ,Stereochemistry ,Saccharomyces cerevisiae ,chemistry.chemical_element ,Peptide ,Ligands ,010402 general chemistry ,01 natural sciences ,Ion ,Inorganic Chemistry ,chemistry.chemical_compound ,Organic chemistry ,Imidazole ,Physical and Theoretical Chemistry ,Ternary complex ,chemistry.chemical_classification ,Binding Sites ,biology ,010405 organic chemistry ,Circular Dichroism ,Imidazoles ,biology.organism_classification ,Amides ,Copper ,Yeast ,0104 chemical sciences ,chemistry ,Yield (chemistry) ,Spectrophotometry, Ultraviolet ,Mating Factor - Abstract
α-Factor-1 (WHWLQLKPGQPMY), a peptidic pheromone of Saccharomyces cerevisiae yeast, contains a XHX type copper(II) binding N-terminal site. Using a soluble analogue, WHWSKNR-amide, we demonstrated that the W(1)H(2)W(3) site alone binds copper(II) with a Kd value of 0.18 pM at pH 7.4 and also binds imidazole (Im) in a ternary complex (Kd of 1 mM at pH 7.4). This interaction boosts the ability of the peptide to sequester copper(II) depending on the Im concentration up to a subfemtomolar range, not available for any oligopeptidic system studied before. Therefore, α-factor-1 and other XHX-type peptides are likely copper(II) carriers in biological systems.
- Published
- 2016
- Full Text
- View/download PDF
30. In Vivo-Near Infrared Imaging of Neurodegeneration
- Author
-
Victoria A, Lawson, Carolin, Tumpach, Cathryn L, Haigh, and Simon C, Drew
- Subjects
Spectroscopy, Near-Infrared ,Cell Death ,Staining and Labeling ,Brain ,Contrast Media ,Succinimides ,Caspase Inhibitors ,Amino Acid Chloromethyl Ketones ,Molecular Imaging ,Prion Diseases ,Mice ,Caspases ,Injections, Intravenous ,Animals - Abstract
In vivo near-infrared (NIR) imaging of molecular processes at the preclinical stage promises to provide more valuable mechanistic information about pathological pathways involved in neurodegeneration. NIR imaging has the potential to improve in vivo therapeutic screening protocols by enabling noninvasive monitoring of presymptomatic responses to treatment. We have developed new NIR fluorescent contrast agents conjugated to markers of cell death, and using these agents we have identified molecular pathways associated with prion-induced neurodegeneration and determined the optimal window for meaningful therapeutic intervention in prion disease. This chapter provides a description of the synthesis and purification of our NIR cell Death (NIRD) contrast agent and the application of in vivo NIRD (iNIRD) imaging to a prion model of neurodegeneration.
- Published
- 2017
31. An Isotopic Dilution Strategy for Characterisation of Paramagnetic Metal Bridging of Proteins and Peptides
- Author
-
Simon C. Drew
- Subjects
chemistry.chemical_classification ,Metal ions in aqueous solution ,Inorganic chemistry ,Peptide ,Isotope dilution ,Oligomer ,law.invention ,Metal ,chemistry.chemical_compound ,Crystallography ,Monomer ,chemistry ,law ,visual_art ,visual_art.visual_art_medium ,Electron paramagnetic resonance ,Peptide sequence - Abstract
Electron paramagnetic resonance spectroscopy in conjunction with site-selective isotopic labelling provides a valuable tool for probing the local coordination environment of paramagnetic metal ions. Sometimes the metal ligands are inter-molecular in origin, such as during biological catalysis involving enzyme/metal-ion/substrate complexes or within oligomeric forms of peptides and proteins. Inter- and intra-molecular metal binding within peptide oligomers can be delineated by combining two fractions of peptide monomers containing the same amino acid sequence but having different isotopic content. Here, the principles of isotopic dilution in EPR spectroscopy are described and simulations provided to demonstrate its application to the identification of Cu2+-bridging of peptide oligomers.
- Published
- 2017
- Full Text
- View/download PDF
32. In Vivo-Near Infrared Imaging of Neurodegeneration
- Author
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Victoria A. Lawson, Cathryn L. Haigh, Simon C. Drew, and Carolin Tumpach
- Subjects
Caspase inhibitors ,business.industry ,Neurodegeneration ,010402 general chemistry ,medicine.disease ,01 natural sciences ,0104 chemical sciences ,03 medical and health sciences ,surgical procedures, operative ,0302 clinical medicine ,In vivo ,medicine ,Near infrared imaging ,Molecular imaging ,Preclinical stage ,business ,Neuroscience ,030217 neurology & neurosurgery - Abstract
In vivo near-infrared (NIR) imaging of molecular processes at the preclinical stage promises to provide more valuable mechanistic information about pathological pathways involved in neurodegeneration. NIR imaging has the potential to improve in vivo therapeutic screening protocols by enabling noninvasive monitoring of presymptomatic responses to treatment. We have developed new NIR fluorescent contrast agents conjugated to markers of cell death, and using these agents we have identified molecular pathways associated with prion-induced neurodegeneration and determined the optimal window for meaningful therapeutic intervention in prion disease. This chapter provides a description of the synthesis and purification of our NIR cell Death (NIRD) contrast agent and the application of in vivo NIRD (iNIRD) imaging to a prion model of neurodegeneration.
- Published
- 2017
- Full Text
- View/download PDF
33. Copper Exchange and Redox Activity of a Prototypical 8-Hydroxyquinoline: Implications for Therapeutic Chelation
- Author
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Wojciech Wróblewski, Magdalena Z. Wiloch, Vijaya Kenche, Wojciech Bal, Urszula E. Wawrzyniak, Mariusz Mital, Izabela Zawisza, and Simon C. Drew
- Subjects
Stereochemistry ,Kinetics ,chemistry.chemical_element ,Peptide ,010402 general chemistry ,01 natural sciences ,Inorganic Chemistry ,chemistry.chemical_compound ,Alzheimer Disease ,Side chain ,Humans ,Chelation ,Physical and Theoretical Chemistry ,chemistry.chemical_classification ,Reactive oxygen species ,Amyloid beta-Peptides ,010405 organic chemistry ,Ligand ,Electron Spin Resonance Spectroscopy ,8-Hydroxyquinoline ,Oxyquinoline ,Copper ,0104 chemical sciences ,chemistry ,Quinolines ,Reactive Oxygen Species ,Oxidation-Reduction - Abstract
The N-truncated β-amyloid (Aβ) isoform Aβ4-x is known to bind Cu(2+) via a redox-silent ATCUN motif with a conditional Kd = 30 fM at pH 7.4. This study characterizes the Cu(2+) interactions and redox activity of Aβx-16 (x = 1, 4) and 2-[(dimethylamino)-methyl-8-hydroxyquinoline, a terdentate 8-hydroxyquinoline (8HQ) with a conditional Kd(CuL) = 35 pM at pH 7.4. Metal transfer between Cu(Aβ1-16), CuL, CuL2, and ternary CuL(NIm(Aβ)) was rapid, while the corresponding equilibrium between L and Aβ4-16 occurred slowly via a metastable CuL(NIm(Aβ)) intermediate. Both CuL and CuL2 were redox-silent in the presence of ascorbate, but a CuL(NIm) complex can generate reactive oxygen species. Because the NIm(Aβ) ligand will be readily exchangeable with NIm ligands of ubiquitous protein His side chains in vivo, this class of 8HQ ligand could transfer Cu(2+) from inert Cu(Aβ4-x) to redox-active CuL(NIm). These findings have implications for the use of terdentate 8HQs as therapeutic chelators to treat neurodegenerative disease.
- Published
- 2016
34. The prion protein regulates beta-amyloid-mediated self-renewal of neural stem cells in vitro
- Author
-
Victoria Lewis, Blaine R. Roberts, Steven J. Collins, Cathryn L. Haigh, Victoria A. Lawson, Qiao-Xin Li, Timothy M. Ryan, Carolin Tumpach, and Simon C. Drew
- Subjects
Amyloid ,Prions ,Neurogenesis ,animal diseases ,Short Report ,Medicine (miscellaneous) ,Subventricular zone ,Biology ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Neural Stem Cells ,medicine ,Animals ,reproductive and urinary physiology ,Cell Proliferation ,030304 developmental biology ,0303 health sciences ,Amyloid beta-Peptides ,Cell growth ,Neurodegeneration ,Cell Cycle Checkpoints ,Cell Biology ,medicine.disease ,Neural stem cell ,Mitochondria ,nervous system diseases ,Cell biology ,medicine.anatomical_structure ,Microscopy, Fluorescence ,nervous system ,Molecular Medicine ,biological phenomena, cell phenomena, and immunity ,Stem cell ,Signal transduction ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
The beta-amyloid (Aβ) peptide and the Aβ-oligomer receptor, prion protein (PrP), both influence neurogenesis. Using in vitro murine neural stem cells (NSCs), we investigated whether Aβ and PrP interact to modify neurogenesis. Aβ imparted PrP-dependent changes on NSC self-renewal, with PrP-ablated and wild-type NSCs displaying increased and decreased cell growth, respectively. In contrast, differentiation of Aβ-treated NSCs into mature cells was unaffected by PrP expression. Such marked PrP-dependent differences in NSC growth responses to Aβ provides further evidence of biologically significant interactions between these two factors and an important new insight into regulation of NSC self-renewal in vivo. Electronic supplementary material The online version of this article (doi:10.1186/s13287-015-0067-4) contains supplementary material, which is available to authorized users.
- Published
- 2015
- Full Text
- View/download PDF
35. A Functional Role for Aβ in Metal Homeostasis? N-Truncation and High-Affinity Copper Binding
- Author
-
Wojciech Bal, Carolin Tumpach, Kevin J. Barnham, Mariusz Mital, Simon C. Drew, Arkadiusz Bonna, Tomasz Frączyk, Urszula E. Wawrzyniak, Nina E. Wezynfeld, Magdalena Z. Wiloch, and Cathryn L. Haigh
- Subjects
chemistry.chemical_classification ,Gene isoform ,Amyloid beta-Peptides ,Amyloid ,010405 organic chemistry ,Peptide ,Bioinorganic chemistry ,General Medicine ,General Chemistry ,010402 general chemistry ,medicine.disease ,01 natural sciences ,Catalysis ,0104 chemical sciences ,chemistry ,Biochemistry ,Extracellular ,medicine ,Homeostasis ,Senile plaques ,Alzheimer's disease ,Copper - Abstract
Accumulation of the β-amyloid (Aβ) peptide in extracellular senile plaques rich in copper and zinc is a defining pathological feature of Alzheimer's disease (AD). The Aβ1-x (x=16/28/40/42) peptides have been the primary focus of Cu(II) binding studies for more than 15 years; however, the N-truncated Aβ4-42 peptide is a major Aβ isoform detected in both healthy and diseased brains, and it contains a novel N-terminal FRH sequence. Proteins with His at the third position are known to bind Cu(II) avidly, with conditional log K values at pH 7.4 in the range of 11.0-14.6, which is much higher than that determined for Aβ1-x peptides. By using Aβ4-16 as a model, it was demonstrated that its FRH sequence stoichiometrically binds Cu(II) with a conditional Kd value of 3×10(-14) M at pH 7.4, and that both Aβ4-16 and Aβ4-42 possess negligible redox activity. Combined with the predominance of Aβ4-42 in the brain, our results suggest a physiological role for this isoform in metal homeostasis within the central nervous system.
- Published
- 2015
36. The N Terminus of α-Synuclein Forms Cu(II)-Bridged Oligomers
- Author
-
Simon C. Drew
- Subjects
chemistry.chemical_classification ,Chemistry ,Stereochemistry ,Organic Chemistry ,Intermolecular force ,Parkinson Disease ,General Chemistry ,Hydrogen-Ion Concentration ,Antiparallel (biochemistry) ,Catalysis ,law.invention ,Divalent ,N-terminus ,Isotopic labeling ,law ,Synuclein ,alpha-Synuclein ,Humans ,α synuclein ,Electron paramagnetic resonance ,Copper ,Protein Binding - Abstract
The oligomerization of α-synuclein (αSyn) is one of the defining features of Parkinson's disease. Binding of divalent copper to the N terminus of αSyn has been implicated in both its function and dysfunction. Herein, the molecular details of the Cu(II) /αSyn binding interface have been revealed using a library of synthetic 56-residue αSyn peptides containing site-specific isotopic labels. Using electron paramagnetic resonance spectroscopy, αSyn is shown to coordinate Cu(II) with high affinity via two pH-dependent coordination modes between pH 6.5-8.5. Most remarkably, the data demonstrate that the dominant mode is associated with binding to oligomers (antiparallel dimers and/or cyclic trimers) in which Cu(II) ions occupy intermolecular bridging sites. The findings provide a molecular link between Cu(II) -bound αSyn and its associated quaternary oligomeric structure.
- Published
- 2015
37. Stable radical content and anti-radical activity of roasted Arabica coffee: from in-tact bean to coffee brew
- Author
-
Furio Suggi Liverani, Simon C. Drew, Luciano Navarini, and Gordon John Fordyce Troup
- Subjects
Antioxidant ,Hot Temperature ,Time Factors ,Free Radicals ,DPPH ,Polymers ,medicine.medical_treatment ,Radical ,lcsh:Medicine ,Coffee ,Antioxidants ,Beverages ,chemistry.chemical_compound ,Phenols ,Picrates ,Botany ,Browning ,medicine ,Food science ,lcsh:Science ,Roasting ,Multidisciplinary ,Chemistry ,Coffea arabica ,Biphenyl Compounds ,lcsh:R ,Electron Spin Resonance Spectroscopy ,Biphenyl compound ,Seeds ,lcsh:Q ,Research Article - Abstract
The roasting of coffee beans generates stable radicals within melanoidins produced by non-enzymatic browning. Roasting coffee beans has further been suggested to increase the antioxidant (AO) capacity of coffee brews. Herein, we have characterized the radical content and AO capacity of brews prepared from Coffea arabica beans sourced directly from an industrial roasting plant. In-tact beans exhibited electron paramagnetic resonance signals arising from Fe3+, Mn2+ and at least three distinct stable radicals as a function of roasting time, whose intensity changed upon grinding and ageing. In coffee brews, the roasting-induced radicals were harboured within the high molecular weight (> 3 kD) melanoidin-containing fraction at a concentration of 15 nM and was associated with aromatic groups within the melanoidins. The low molecular weight (< 3 kD) fraction exhibited the highest AO capacity using DPPH as an oxidant. The AO activity was not mediated by the stable radicals or by metal complexes within the brew. While other non-AO functions of the roasting-induced radical and metal complexes may be possible in vivo, we confirm that the in vitro antiradical activity of brewed coffee is dominated by low molecular weight phenolic compounds.
- Published
- 2015
38. Inside Back Cover: The N Terminus of α-Synuclein Forms CuII-Bridged Oligomers (Chem. Eur. J. 19/2015)
- Author
-
Simon C. Drew
- Subjects
Stereochemistry ,Organic Chemistry ,chemistry.chemical_element ,General Chemistry ,Copper ,Catalysis ,law.invention ,N-terminus ,Isotopic labeling ,chemistry ,law ,Synuclein ,Organic chemistry ,Cover (algebra) ,α synuclein ,Electron paramagnetic resonance - Published
- 2015
- Full Text
- View/download PDF
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