4,053 results on '"Silke J."'
Search Results
2. Combinatorial single-cell profiling of major chromatin types with MAbID
- Author
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Lochs, Silke J. A., van der Weide, Robin H., de Luca, Kim L., Korthout, Tessy, van Beek, Ramada E., Kimura, Hiroshi, and Kind, Jop
- Published
- 2024
- Full Text
- View/download PDF
3. Aged females unilaterally hypersensitize, lack descending inhibition, and overexpress alpha1D adrenergic receptors in a murine posttraumatic chronic pain model.
- Author
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Hirsch, Silke J., Budig, Alexandra, Husam, Sanar, and Birklein, Frank
- Published
- 2024
- Full Text
- View/download PDF
4. Spatial proteomics identifies JAKi as treatment for a lethal skin disease.
- Author
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Nordmann TM, Anderton H, Hasegawa A, Schweizer L, Zhang P, Stadler PC, Sinha A, Metousis A, Rosenberger FA, Zwiebel M, Satoh TK, Anzengruber F, Strauss MT, Tanzer MC, Saito Y, Gong T, Thielert M, Kimura H, Silke N, Rodriguez EH, Restivo G, Nguyen HH, Gross A, Feldmeyer L, Joerg L, Levesque MP, Murray PJ, Ingen-Housz-Oro S, Mund A, Abe R, Silke J, Ji C, French LE, and Mann M
- Abstract
Toxic epidermal necrolysis (TEN) is a fatal drug-induced skin reaction triggered by common medications and is an emerging public health issue
1-3 . Patients with TEN undergo severe and sudden epidermal detachment caused by keratinocyte cell death. Although molecular mechanisms that drive keratinocyte cell death have been proposed, the main drivers remain unknown, and there is no effective therapy for TEN4-6 . Here, to systematically map molecular changes that are associated with TEN and identify potential druggable targets, we utilized deep visual proteomics, which provides single-cell-based, cell-type-resolution proteomics7,8 . We analysed formalin-fixed, paraffin-embedded archived skin tissue biopsies of three types of cutaneous drug reactions with varying severity and quantified more than 5,000 proteins in keratinocytes and skin-infiltrating immune cells. This revealed a marked enrichment of type I and type II interferon signatures in the immune cell and keratinocyte compartment of patients with TEN, as well as phosphorylated STAT1 activation. Targeted inhibition with the pan-JAK inhibitor tofacitinib in vitro reduced keratinocyte-directed cytotoxicity. In vivo oral administration of tofacitinib, baricitinib or the JAK1-specific inhibitors abrocitinib or upadacitinib ameliorated clinical and histological disease severity in two distinct mouse models of TEN. Crucially, treatment with JAK inhibitors (JAKi) was safe and associated with rapid cutaneous re-epithelialization and recovery in seven patients with TEN. This study uncovers the JAK/STAT and interferon signalling pathways as key pathogenic drivers of TEN and demonstrates the potential of targeted JAKi as a curative therapy., (© 2024. The Author(s).)- Published
- 2024
- Full Text
- View/download PDF
5. Intracellular zinc protects tumours from T cell-mediated cytotoxicity.
- Author
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Lelliott EJ, Naddaf J, Ganio K, Michie J, Wang S, Liu L, Silke N, Ahn A, Ramsbottom KM, Brennan AJ, Freeman AJ, Goel S, Vervoort SJ, Kearney CJ, Beavis PA, McDevitt CA, Silke J, and Oliaro J
- Abstract
Tumour immune evasion presents a significant challenge to the effectiveness of cancer immunotherapies. Recent advances in high-throughput screening techniques have uncovered that loss of antigen presentation and cytokine signalling pathways are central mechanisms by which tumours evade T cell immunity. To uncover additional vulnerabilities in tumour cells beyond the well-recognized antigen presentation pathway, we conducted a genome-wide CRISPR/Cas9 screen to identify genes that mediate resistance to chimeric-antigen receptor (CAR)-T cells, which function independently of classical antigen presentation. Our study revealed that loss of core-binding factor subunit beta (CBFβ) enhances tumour cell resistance to T cell killing, mediated through T cell-derived TNF. Mechanistically, RNA-sequencing and elemental analyses revealed that deletion of CBFβ disrupts numerous pathways including those involved in zinc homoeostasis. Moreover, we demonstrated that modulation of cellular zinc, achieved by supplementation or chelation, significantly altered tumour cell susceptibility to TNF by regulating the levels of inhibitor of apoptosis proteins. Consistent with this, treatment of tumour cells with a membrane-permeable zinc chelator had no impact on tumour cell viability alone, but significantly increased tumour cell lysis by CD8+ T cells in a TNF-dependent but perforin-independent manner. These results underscore the crucial role of intracellular zinc in regulating tumour cell susceptibility to T cell-mediated killing, revealing a novel vulnerability in tumour cells that might be exploited for the development of future cancer immunotherapeutics., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
6. Immunogenic cell death in cancer: targeting necroptosis to induce antitumour immunity.
- Author
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Meier P, Legrand AJ, Adam D, and Silke J
- Subjects
- Humans, Animals, CD8-Positive T-Lymphocytes immunology, Immunotherapy methods, Necroptosis immunology, Neoplasms immunology, Neoplasms pathology, Immunogenic Cell Death, Tumor Microenvironment immunology
- Abstract
Most metastatic cancers remain incurable due to the emergence of apoptosis-resistant clones, fuelled by intratumour heterogeneity and tumour evolution. To improve treatment, therapies should not only kill cancer cells but also activate the immune system against the tumour to eliminate any residual cancer cells that survive treatment. While current cancer therapies rely heavily on apoptosis - a largely immunologically silent form of cell death - there is growing interest in harnessing immunogenic forms of cell death such as necroptosis. Unlike apoptosis, necroptosis generates second messengers that act on immune cells in the tumour microenvironment, alerting them of danger. This lytic form of cell death optimizes the provision of antigens and adjuvanticity for immune cells, potentially boosting anticancer treatment approaches by combining cellular suicide and immune response approaches. In this Review, we discuss the mechanisms of necroptosis and how it activates antigen-presenting cells, drives cross-priming of CD8
+ T cells and induces antitumour immune responses. We also examine the opportunities and potential drawbacks of such strategies for exposing cancer cells to immunological attacks., (© 2024. Springer Nature Limited.)- Published
- 2024
- Full Text
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7. Achieving more equitable access to assisted reproduction
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Dyer, Silke J, primary, Adamson, G David, additional, Inhorn, Marcia C, additional, and Zegers-Hochschild, Fernando, additional
- Published
- 2024
- Full Text
- View/download PDF
8. Simultaneous Quantification of Spatial Genome Positioning and Transcriptomics in Single Cells with scDam&T-Seq
- Author
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Lochs, Silke J. A., primary and Kind, Jop, additional
- Published
- 2022
- Full Text
- View/download PDF
9. Correction to: RIPK1 prevents TRADD-driven, but TNFR1 independent, apoptosis during development.
- Author
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Anderton H, Bandala-Sanchez E, Simpson DS, Rickard JA, Ng AP, Di Rago L, Hall C, Vince JE, Silke J, Liccardi G, and Feltham R
- Published
- 2024
- Full Text
- View/download PDF
10. Biallelic human SHARPIN loss of function induces autoinflammation and immunodeficiency.
- Author
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Oda H, Manthiram K, Chavan PP, Rieser E, Veli Ö, Kaya Ö, Rauch C, Nakabo S, Kuehn HS, Swart M, Wang Y, Çelik NI, Molitor A, Ziaee V, Movahedi N, Shahrooei M, Parvaneh N, Alipour-Olyei N, Carapito R, Xu Q, Preite S, Beck DB, Chae JJ, Nehrebecky M, Ombrello AK, Hoffmann P, Romeo T, Deuitch NT, Matthíasardóttir B, Mullikin J, Komarow H, Stoddard J, Niemela J, Dobbs K, Sweeney CL, Anderton H, Lawlor KE, Yoshitomi H, Yang D, Boehm M, Davis J, Mudd P, Randazzo D, Tsai WL, Gadina M, Kaplan MJ, Toguchida J, Mayer CT, Rosenzweig SD, Notarangelo LD, Iwai K, Silke J, Schwartzberg PL, Boisson B, Casanova JL, Bahram S, Rao AP, Peltzer N, Walczak H, Lalaoui N, Aksentijevich I, and Kastner DL
- Subjects
- Humans, Female, Male, NF-kappa B metabolism, Ubiquitin-Protein Ligases genetics, Inflammation immunology, Inflammation genetics, B-Lymphocytes immunology, Loss of Function Mutation, Fibroblasts metabolism, Fibroblasts immunology, Intracellular Signaling Peptides and Proteins genetics, Intracellular Signaling Peptides and Proteins metabolism, Animals, Mice, Alleles, Immunologic Deficiency Syndromes genetics, Immunologic Deficiency Syndromes immunology, Nerve Tissue Proteins, Ubiquitins
- Abstract
The linear ubiquitin assembly complex (LUBAC) consists of HOIP, HOIL-1 and SHARPIN and is essential for proper immune responses. Individuals with HOIP and HOIL-1 deficiencies present with severe immunodeficiency, autoinflammation and glycogen storage disease. In mice, the loss of Sharpin leads to severe dermatitis due to excessive keratinocyte cell death. Here, we report two individuals with SHARPIN deficiency who manifest autoinflammatory symptoms but unexpectedly no dermatological problems. Fibroblasts and B cells from these individuals showed attenuated canonical NF-κB responses and a propensity for cell death mediated by TNF superfamily members. Both SHARPIN-deficient and HOIP-deficient individuals showed a substantial reduction of secondary lymphoid germinal center B cell development. Treatment of one SHARPIN-deficient individual with anti-TNF therapies led to complete clinical and transcriptomic resolution of autoinflammation. These findings underscore the critical function of the LUBAC as a gatekeeper for cell death-mediated immune dysregulation in humans., (© 2024. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
- Published
- 2024
- Full Text
- View/download PDF
11. Blocking cell death limits lung damage and inflammation from influenza.
- Author
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Gupta N and Silke J
- Subjects
- Animals, Humans, Mice, Inflammation pathology, Inflammation immunology, Cell Death, Orthomyxoviridae Infections virology, Orthomyxoviridae Infections immunology, Orthomyxoviridae Infections pathology, Influenza, Human virology, Influenza, Human immunology, Lung pathology, Lung immunology, Lung virology
- Published
- 2024
- Full Text
- View/download PDF
12. Combinatorial single-cell profiling of major chromatin types with MAbID
- Author
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Lochs, Silke J. A., primary, van der Weide, Robin H., additional, de Luca, Kim L., additional, Korthout, Tessy, additional, van Beek, Ramada E., additional, Kimura, Hiroshi, additional, and Kind, Jop, additional
- Published
- 2023
- Full Text
- View/download PDF
13. Do Airlines Pad Their Schedules?
- Author
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Forbes, Silke J., Lederman, Mara, and Yuan, Zhe
- Published
- 2019
14. Simultaneous quantification of protein–DNA interactions and transcriptomes in single cells with scDam&T-seq
- Author
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Markodimitraki, Corina M., Rang, Franka J., Rooijers, Koos, de Vries, Sandra S., Chialastri, Alex, de Luca, Kim L., Lochs, Silke J. A., Mooijman, Dylan, Dey, Siddharth S., and Kind, Jop
- Published
- 2020
- Full Text
- View/download PDF
15. Quality disclosure when firms set their own quality targets
- Author
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Forbes, Silke J., Lederman, Mara, and Wither, Michael J.
- Published
- 2019
- Full Text
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16. An immunohistochemical atlas of necroptotic pathway expression.
- Author
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Chiou S, Al-Ani AH, Pan Y, Patel KM, Kong IY, Whitehead LW, Light A, Young SN, Barrios M, Sargeant C, Rajasekhar P, Zhu L, Hempel A, Lin A, Rickard JA, Hall C, Gangatirkar P, Yip RK, Cawthorne W, Jacobsen AV, Horne CR, Martin KR, Ioannidis LJ, Hansen DS, Day J, Wicks IP, Law C, Ritchie ME, Bowden R, Hildebrand JM, O'Reilly LA, Silke J, Giulino-Roth L, Tsui E, Rogers KL, Hawkins ED, Christensen B, Murphy JM, and Samson AL
- Subjects
- Animals, Humans, Mice, Protein Kinases metabolism, Protein Kinases genetics, Caspase 8 metabolism, Signal Transduction, Mice, Inbred C57BL, Necroptosis, Receptor-Interacting Protein Serine-Threonine Kinases metabolism, Receptor-Interacting Protein Serine-Threonine Kinases genetics, Immunohistochemistry methods
- Abstract
Necroptosis is a lytic form of regulated cell death reported to contribute to inflammatory diseases of the gut, skin and lung, as well as ischemic-reperfusion injuries of the kidney, heart and brain. However, precise identification of the cells and tissues that undergo necroptotic cell death in vivo has proven challenging in the absence of robust protocols for immunohistochemical detection. Here, we provide automated immunohistochemistry protocols to detect core necroptosis regulators - Caspase-8, RIPK1, RIPK3 and MLKL - in formalin-fixed mouse and human tissues. We observed surprising heterogeneity in protein expression within tissues, whereby short-lived immune barrier cells were replete with necroptotic effectors, whereas long-lived cells lacked RIPK3 or MLKL expression. Local changes in the expression of necroptotic effectors occurred in response to insults such as inflammation, dysbiosis or immune challenge, consistent with necroptosis being dysregulated in disease contexts. These methods will facilitate the precise localisation and evaluation of necroptotic signaling in vivo., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
17. LB1799 Single-cell type proteomic analysis in FFPE tissue sections of severe cutaneous adverse drug reactions
- Author
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Nordmann, T., primary, Anderton, H., additional, Lisa, S., additional, Ankit, S., additional, Stadler, P.C., additional, Silke, J., additional, French, L.E., additional, and Mann, M., additional
- Published
- 2023
- Full Text
- View/download PDF
18. Osteoinductive calcium phosphate with submicron topography as bone graft substitute for maxillary sinus floor augmentation: A translational study
- Author
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Lukas A. van Dijk, Nard G. Janssen, Silke J. Nurmohamed, Marvick S. M. Muradin, Alessia Longoni, Robbert C. Bakker, Florence G. de Groot, Joost D. de Bruijn, Debby Gawlitta, and Antoine J. W. P. Rosenberg
- Subjects
Oral Surgery - Published
- 2023
19. Apoptotic cell death in disease-Current understanding of the NCCD 2023.
- Author
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Vitale I, Pietrocola F, Guilbaud E, Aaronson SA, Abrams JM, Adam D, Agostini M, Agostinis P, Alnemri ES, Altucci L, Amelio I, Andrews DW, Aqeilan RI, Arama E, Baehrecke EH, Balachandran S, Bano D, Barlev NA, Bartek J, Bazan NG, Becker C, Bernassola F, Bertrand MJM, Bianchi ME, Blagosklonny MV, Blander JM, Blandino G, Blomgren K, Borner C, Bortner CD, Bove P, Boya P, Brenner C, Broz P, Brunner T, Damgaard RB, Calin GA, Campanella M, Candi E, Carbone M, Carmona-Gutierrez D, Cecconi F, Chan FK, Chen GQ, Chen Q, Chen YH, Cheng EH, Chipuk JE, Cidlowski JA, Ciechanover A, Ciliberto G, Conrad M, Cubillos-Ruiz JR, Czabotar PE, D'Angiolella V, Daugaard M, Dawson TM, Dawson VL, De Maria R, De Strooper B, Debatin KM, Deberardinis RJ, Degterev A, Del Sal G, Deshmukh M, Di Virgilio F, Diederich M, Dixon SJ, Dynlacht BD, El-Deiry WS, Elrod JW, Engeland K, Fimia GM, Galassi C, Ganini C, Garcia-Saez AJ, Garg AD, Garrido C, Gavathiotis E, Gerlic M, Ghosh S, Green DR, Greene LA, Gronemeyer H, Häcker G, Hajnóczky G, Hardwick JM, Haupt Y, He S, Heery DM, Hengartner MO, Hetz C, Hildeman DA, Ichijo H, Inoue S, Jäättelä M, Janic A, Joseph B, Jost PJ, Kanneganti TD, Karin M, Kashkar H, Kaufmann T, Kelly GL, Kepp O, Kimchi A, Kitsis RN, Klionsky DJ, Kluck R, Krysko DV, Kulms D, Kumar S, Lavandero S, Lavrik IN, Lemasters JJ, Liccardi G, Linkermann A, Lipton SA, Lockshin RA, López-Otín C, Luedde T, MacFarlane M, Madeo F, Malorni W, Manic G, Mantovani R, Marchi S, Marine JC, Martin SJ, Martinou JC, Mastroberardino PG, Medema JP, Mehlen P, Meier P, Melino G, Melino S, Miao EA, Moll UM, Muñoz-Pinedo C, Murphy DJ, Niklison-Chirou MV, Novelli F, Núñez G, Oberst A, Ofengeim D, Opferman JT, Oren M, Pagano M, Panaretakis T, Pasparakis M, Penninger JM, Pentimalli F, Pereira DM, Pervaiz S, Peter ME, Pinton P, Porta G, Prehn JHM, Puthalakath H, Rabinovich GA, Rajalingam K, Ravichandran KS, Rehm M, Ricci JE, Rizzuto R, Robinson N, Rodrigues CMP, Rotblat B, Rothlin CV, Rubinsztein DC, Rudel T, Rufini A, Ryan KM, Sarosiek KA, Sawa A, Sayan E, Schroder K, Scorrano L, Sesti F, Shao F, Shi Y, Sica GS, Silke J, Simon HU, Sistigu A, Stephanou A, Stockwell BR, Strapazzon F, Strasser A, Sun L, Sun E, Sun Q, Szabadkai G, Tait SWG, Tang D, Tavernarakis N, Troy CM, Turk B, Urbano N, Vandenabeele P, Vanden Berghe T, Vander Heiden MG, Vanderluit JL, Verkhratsky A, Villunger A, von Karstedt S, Voss AK, Vousden KH, Vucic D, Vuri D, Wagner EF, Walczak H, Wallach D, Wang R, Wang Y, Weber A, Wood W, Yamazaki T, Yang HT, Zakeri Z, Zawacka-Pankau JE, Zhang L, Zhang H, Zhivotovsky B, Zhou W, Piacentini M, Kroemer G, and Galluzzi L
- Subjects
- Animals, Humans, Cell Death, Carcinogenesis, Mammals metabolism, Apoptosis genetics, Caspases genetics, Caspases metabolism
- Abstract
Apoptosis is a form of regulated cell death (RCD) that involves proteases of the caspase family. Pharmacological and genetic strategies that experimentally inhibit or delay apoptosis in mammalian systems have elucidated the key contribution of this process not only to (post-)embryonic development and adult tissue homeostasis, but also to the etiology of multiple human disorders. Consistent with this notion, while defects in the molecular machinery for apoptotic cell death impair organismal development and promote oncogenesis, the unwarranted activation of apoptosis promotes cell loss and tissue damage in the context of various neurological, cardiovascular, renal, hepatic, infectious, neoplastic and inflammatory conditions. Here, the Nomenclature Committee on Cell Death (NCCD) gathered to critically summarize an abundant pre-clinical literature mechanistically linking the core apoptotic apparatus to organismal homeostasis in the context of disease., (© 2023. The Author(s), under exclusive licence to ADMC Associazione Differenziamento e Morte Cellulare.)
- Published
- 2023
- Full Text
- View/download PDF
20. RIPK3 cleavage is dispensable for necroptosis inhibition but restricts NLRP3 inflammasome activation.
- Author
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Tran HT, Kratina T, Coutansais A, Michalek D, Hogan BM, Lawlor KE, Vince JE, Silke J, and Lalaoui N
- Subjects
- Animals, Mice, Mice, Inbred C57BL, Interleukin-1beta metabolism, Pyroptosis, Receptor-Interacting Protein Serine-Threonine Kinases metabolism, Necroptosis, Inflammasomes metabolism, NLR Family, Pyrin Domain-Containing 3 Protein metabolism, Caspase 8 metabolism
- Abstract
Caspase-8 activity is required to inhibit necroptosis during embryogenesis in mice. In vitro studies have suggested that caspase-8 directly cleaves RIPK1, CYLD and the key necroptotic effector kinase RIPK3 to repress necroptosis. However, recent studies have shown that mice expressing uncleavable RIPK1 die during embryogenesis due to excessive apoptosis, while uncleavable CYLD mice are viable. Therefore, these results raise important questions about the role of RIPK3 cleavage. To evaluate the physiological significance of RIPK3 cleavage, we generated Ripk3
D333A/D333A mice harbouring a point mutation in the conserved caspase-8 cleavage site. These mice are viable, demonstrating that RIPK3 cleavage is not essential for blocking necroptosis during development. Furthermore, unlike RIPK1 cleavage-resistant cells, Ripk3D333A/D333A cells were not significantly more sensitive to necroptotic stimuli. Instead, we found that the cleavage of RIPK3 by caspase-8 restricts NLRP3 inflammasome activation-dependent pyroptosis and IL-1β secretion when Inhibitors of APoptosis (IAP) are limited. These results demonstrate that caspase-8 does not inhibit necroptosis by directly cleaving RIPK3 and further underscore a role for RIPK3 in regulating the NLRP3 inflammasome., (© 2024. The Author(s).)- Published
- 2024
- Full Text
- View/download PDF
21. RIPK1 and necroptosis role in premature ageing.
- Author
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Wang P and Silke J
- Subjects
- Humans, Necrosis, Aging genetics, Receptor-Interacting Protein Serine-Threonine Kinases genetics, Receptor-Interacting Protein Serine-Threonine Kinases metabolism, Necroptosis, Apoptosis
- Published
- 2024
- Full Text
- View/download PDF
22. Doctor switching costs
- Author
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Dahl, Gordon B., primary and Forbes, Silke J., additional
- Published
- 2023
- Full Text
- View/download PDF
23. 1521 Contrasting roles of necroptosis in wound recovery and skin inflammation
- Author
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Anderton, H., primary, Silke, N., additional, Bandala-Sanchez, E., additional, Lalaoui, N., additional, and Silke, J., additional
- Published
- 2023
- Full Text
- View/download PDF
24. Mind bomb 2 limits inflammatory dermatitis in Sharpin mutant mice independently of cell death
- Author
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Gutkind, JS, Simpson, DS, Anderton, H, Yousef, J, Vaibhav, V, Cobbold, SA, Bandala-Sanchez, E, Kueh, AJ, Dagley, LF, Herold, MJ, Silke, J, Vince, JE, Feltham, R, Gutkind, JS, Simpson, DS, Anderton, H, Yousef, J, Vaibhav, V, Cobbold, SA, Bandala-Sanchez, E, Kueh, AJ, Dagley, LF, Herold, MJ, Silke, J, Vince, JE, and Feltham, R
- Abstract
Skin inflammation is a complex process implicated in various dermatological disorders. The chronic proliferative dermatitis (cpd) phenotype driven by the cpd mutation (cpdm) in the Sharpin gene is characterized by dermal inflammation and epidermal abnormalities. Tumour necrosis factor (TNF) and caspase-8-driven cell death causes the pathogenesis of Sharpincpdm mice; however, the role of mind bomb 2 (MIB2), a pro-survival E3 ubiquitin ligase involved in TNF signaling, in skin inflammation remains unknown. Here, we demonstrate that MIB2 antagonizes inflammatory dermatitis in the context of the cpd mutation. Surprisingly, the role of MIB2 in limiting skin inflammation is independent of its known pro-survival function and E3 ligase activity. Instead, MIB2 enhances the production of wound-healing molecules, granulocyte colony-stimulating factor, and Eotaxin, within the skin. This discovery advances our comprehension of inflammatory cytokines and chemokines associated with cpdm pathogenesis and highlights the significance of MIB2 in inflammatory skin disease that is independent of its ability to regulate TNF-induced cell death.
- Published
- 2023
25. Deletion of Gpatch2 does not alter Tnf expression in mice
- Author
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Dalseno, D, Anderton, H, Kueh, A, Herold, MJ, Silke, J, Strasser, A, Bouillet, P, Dalseno, D, Anderton, H, Kueh, A, Herold, MJ, Silke, J, Strasser, A, and Bouillet, P
- Abstract
The cytokine TNF has essential roles in immune defence against diverse pathogens and, when its expression is deregulated, it can drive severe inflammatory disease. The control of TNF levels is therefore critical for normal functioning of the immune system and health. We have identified GPATCH2 as a putative repressor of Tnf expression acting post-transcriptionally through the TNF 3' UTR in a CRISPR screen for novel regulators of TNF. GPATCH2 is a proposed cancer-testis antigen with roles reported in proliferation in cell lines. However, its role in vivo has not been established. We have generated Gpatch2-/- mice on a C57BL/6 background to assess the potential of GPATCH2 as a regulator of Tnf expression. Here we provide the first insights into Gpatch2-/- animals and show that loss of GPATCH2 affects neither basal Tnf expression in mice, nor Tnf expression in intraperitoneal LPS and subcutaneous SMAC-mimetic injection models of inflammation. We detected GPATCH2 protein in mouse testis and at lower levels in several other tissues, however, the morphology of the testis and these other tissues appears normal in Gpatch2-/- animals. Gpatch2-/- mice are viable, appear grossly normal, and we did not detect notable aberrations in lymphoid tissues or blood cell composition. Collectively, our results suggest no discernible role of GPATCH2 in Tnf expression, and the absence of an overt phenotype in Gpatch2-/- mice warrants further investigation of the role of GPATCH2.
- Published
- 2023
26. Combinatorial single-cell profiling of major chromatin types with MAbID
- Author
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Lochs, Silke J A, van der Weide, Robin H, de Luca, Kim L, Korthout, Tessy, van Beek, Ramada E, Kimura, Hiroshi, Kind, Jop, Lochs, Silke J A, van der Weide, Robin H, de Luca, Kim L, Korthout, Tessy, van Beek, Ramada E, Kimura, Hiroshi, and Kind, Jop
- Abstract
Gene expression programs result from the collective activity of numerous regulatory factors. Studying their cooperative mode of action is imperative to understand gene regulation, but simultaneously measuring these factors within one sample has been challenging. Here we introduce Multiplexing Antibodies by barcode Identification (MAbID), a method for combinatorial genomic profiling of histone modifications and chromatin-binding proteins. MAbID employs antibody-DNA conjugates to integrate barcodes at the genomic location of the epitope, enabling combined incubation of multiple antibodies to reveal the distributions of many epigenetic markers simultaneously. We used MAbID to profile major chromatin types and multiplexed measurements without loss of individual data quality. Moreover, we obtained joint measurements of six epitopes in single cells of mouse bone marrow and during mouse in vitro differentiation, capturing associated changes in multifactorial chromatin states. Thus, MAbID holds the potential to gain unique insights into the interplay between gene regulatory mechanisms, especially for low-input samples and in single cells.
- Published
- 2023
27. Osteoinductive calcium phosphate with submicron topography as bone graft substitute for maxillary sinus floor augmentation: A translational study
- Author
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MS Bijzondere Tandheelkunde, MS Mondziekten/Kaakchirurgie, Other research (not in main researchprogram), MKA/BT Onderzoek, Regenerative Medicine and Stem Cells, Zorgeenheid MKA/BT Medisch, van Dijk, Lukas A., Janssen, Nard G., Nurmohamed, Silke J., Muradin, Marvick S.M., Longoni, Alessia, Bakker, Robbert C., de Groot, Florence G., de Bruijn, Joost D., Gawlitta, Debby, Rosenberg, Antoine J.W.P., MS Bijzondere Tandheelkunde, MS Mondziekten/Kaakchirurgie, Other research (not in main researchprogram), MKA/BT Onderzoek, Regenerative Medicine and Stem Cells, Zorgeenheid MKA/BT Medisch, van Dijk, Lukas A., Janssen, Nard G., Nurmohamed, Silke J., Muradin, Marvick S.M., Longoni, Alessia, Bakker, Robbert C., de Groot, Florence G., de Bruijn, Joost D., Gawlitta, Debby, and Rosenberg, Antoine J.W.P.
- Published
- 2023
28. Postmatch recovery of physical performance and biochemical markers in team ball sports: a systematic review
- Author
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Steven H Doeven, Michel S Brink, Silke J Kosse, and Koen A P M Lemmink
- Subjects
Medicine (General) ,R5-920 - Abstract
Background Insufficient postmatch recovery in elite players may cause an increased risk of injuries, illnesses and non-functional over-reaching.Objective To evaluate postmatch recovery time courses of physical performance and biochemical markers in team ball sport players.Study design Systematic review.Data sources PubMed and Web of Science.Eligibility criteria for selecting studies This systematic review was conducted according to Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. The Critical Review Form for Quantitative Studies was used to evaluate quality. Studies were included if they met the following criteria: (1) original research evaluated players’ physical recovery postmatch; (2) team/intermittent sports; and (3) at least two postmeasurements were compared with baseline values.Results Twenty-eight studies were eligible. Mean methodological quality was 11.2±1.11. Most used performance tests and biochemical markers were the countermovement jump test, sprint tests and creatine kinase (CK), cortisol (C) and testosterone (T), respectively.Summary/conclusions The current evidence demonstrates that underlying mechanisms of muscle recovery are still in progress while performance recovery is already reached. CK recovery time courses are up to ≥72 hours. Soccer and rugby players need more time to recover for sprint performance, CK and C in comparison to other team ball sports. There are more high-quality studies needed regarding recovery in various team sports and recovery strategies on an individual level should be evaluated.Clinical relevance Ongoing insufficient recovery can be prevented by the use of the presented recovery time courses as specific practical recovery guidelines.
- Published
- 2018
- Full Text
- View/download PDF
29. Osteoinductive calcium phosphate with submicron topography as bone graft substitute for maxillary sinus floor augmentation: A translational study.
- Author
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van Dijk, Lukas A., Janssen, Nard G., Nurmohamed, Silke J., Muradin, Marvick S. M., Longoni, Alessia, Bakker, Robbert C., de Groot, Florence G., de Bruijn, Joost D., Gawlitta, Debby, and Rosenberg, Antoine J. W. P.
- Subjects
SINUS augmentation ,BONE substitutes ,BONE grafting ,CALCIUM phosphate ,PROSTHESIS design & construction ,SURFACE topography - Abstract
Objectives: The aim of this study was the preclinical and clinical evaluation of osteoinductive calcium phosphate with submicron surface topography as a bone graft substitute for maxillary sinus floor augmentation (MSFA). Material and Methods: A preclinical sheep model of MSFA was used to compare a calcium phosphate with submicron needle‐shaped topography (BCPN, MagnetOs Granules, Kuros Biosciences BV) to a calcium phosphate with submicron grain‐shaped topography (BCPG) and autologous bone graft (ABG) as controls. Secondly, a 10‐patient, prospective, randomized, controlled trial was performed to compare BCPN to ABG in MSFA with two‐stage implant placement. Results: The pre‐clinical study demonstrated that both BCPN and BCPG were highly biocompatible, supported bony ingrowth with direct bone apposition against the material, and exhibited bone formation as early as 3 weeks post‐implantation. However, BCPN demonstrated significantly more bone formation than BCPG at the study endpoint of 12 weeks. Only BCPN reached an equivalent amount of bone formation in the available space and a greater proportion of calcified material (bone + graft material) in the maxillary sinus compared to the "gold standard" ABG after 12 weeks. These results were validated in a small prospective clinical study, in which BCPN was found comparable to ABG in implant stability, bone height, new bone formation in trephine core biopsies, and overall clinical outcome. Conclusion: This translational work demonstrates that osteoinductive calcium phosphates are promising bone graft substitutes for MSFA, whereas their bone‐forming potential depends on the design of their surface features. Netherlands Trial Register, NL6436. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
30. H3K27me3 dictates atypical genome-nuclear lamina interactions and allelic asymmetry during early embryogenesis
- Author
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Guerreiro, Isabel, primary, Rang, Franka J., additional, Kawamura, Yumiko K., additional, Groenveld, Femke C., additional, van Beek, Ramada E., additional, Lochs, Silke J A, additional, Boele, Ellen, additional, Peters, Antoine, additional, and Kind, Jop, additional
- Published
- 2023
- Full Text
- View/download PDF
31. H3K27me3 dictates atypical genome-nuclear lamina interactions and allelic asymmetry during early embryogenesis
- Author
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Isabel Guerreiro, Franka J. Rang, Yumiko K. Kawamura, Femke C. Groenveld, Ramada E. van Beek, Silke J. A. Lochs, Ellen Boele, Antoine H. M. F. Peters, and Jop Kind
- Abstract
The very first days of mammalian embryonic development are accompanied by epigenetic reprogramming and extensive changes in nuclear organization. In particular, genomic regions located at the periphery of the nucleus, termed lamina-associated domains (LADs), undergo major rearrangements after fertilization. However, the role of LADs in regulating gene expression as well as the interplay with various chromatin marks during preimplantation development remains elusive. In this study, we obtained single-cell LAD profiles coupled with the corresponding gene expression readout throughout the first days of mouse development. We detect extensive cell-cell LAD variability at the 2-cell stage, which surprisingly does not seem to functionally affect gene expression. This suggests an unusual uncoupling between 3D-nuclear genome organization and gene expression during totipotent developmental stages. By analyzing LAD dynamics and chromatin states across early developmental stages in an allelic-specific manner, we identify genomic regions that transiently detach from the nuclear lamina and are enriched by non-canonical H3K27me3. Upon maternal knock-out of a component of the Polycomb repressive complex 2 and concomitant loss of H3K27me3 during early embryogenesis, these regions relocate to the lamina at the 2-cell stage. Our results suggest that H3K27me3 is the prime determinant in establishing the atypical distribution of the genome at the nuclear periphery during the first days of embryonic development. This study provides insight into the molecular mechanisms regulating nuclear organization of parental genomes during very early mammalian development.
- Published
- 2023
32. Mind bomb 2 limits inflammatory dermatitis in Sharpin mutant mice independently of cell death.
- Author
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Simpson DS, Anderton H, Yousef J, Vaibhav V, Cobbold SA, Bandala-Sanchez E, Kueh AJ, Dagley LF, Herold MJ, Silke J, Vince JE, and Feltham R
- Abstract
Skin inflammation is a complex process implicated in various dermatological disorders. The chronic proliferative dermatitis (cpd) phenotype driven by the cpd mutation (cpdm) in the Sharpin gene is characterized by dermal inflammation and epidermal abnormalities. Tumour necrosis factor (TNF) and caspase-8-driven cell death causes the pathogenesis of Sharpin
cpdm mice; however, the role of mind bomb 2 (MIB2), a pro-survival E3 ubiquitin ligase involved in TNF signaling, in skin inflammation remains unknown. Here, we demonstrate that MIB2 antagonizes inflammatory dermatitis in the context of the cpd mutation. Surprisingly, the role of MIB2 in limiting skin inflammation is independent of its known pro-survival function and E3 ligase activity. Instead, MIB2 enhances the production of wound-healing molecules, granulocyte colony-stimulating factor, and Eotaxin, within the skin. This discovery advances our comprehension of inflammatory cytokines and chemokines associated with cpdm pathogenesis and highlights the significance of MIB2 in inflammatory skin disease that is independent of its ability to regulate TNF-induced cell death., (© The Author(s) 2023. Published by Oxford University Press on behalf of National Academy of Sciences.)- Published
- 2023
- Full Text
- View/download PDF
33. Quality Disclosure Programs and Internal Organizational Practices: Evidence from Airline Flight Delays
- Author
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Forbes, Silke J., Lederman, Mara, and Tombe, Trevor
- Published
- 2015
34. Does Competition Benefit Complements? Evidence from Airlines and Hotels
- Author
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Forbes, Silke J., primary and Kosová, Renáta, additional
- Published
- 2022
- Full Text
- View/download PDF
35. Poor recovery of households from out-of-pocket payment for assisted reproductive technology
- Author
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Dyer, Silke J, Vinoos, Latiefa, and Ataguba, John E
- Published
- 2017
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- View/download PDF
36. Co-localisation of Azaspiracid Analogs with the Dinoflagellate Species Azadinium spinosum and Amphidoma languida in the Southwest of Ireland.
- Author
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McGirr S, Clarke D, Kilcoyne J, Silke J, and Touzet N
- Subjects
- Humans, Ireland, Marine Toxins, Dinoflagellida genetics, Spiro Compounds analysis
- Abstract
Phytoplankton and biotoxin monitoring programmes have been implemented in many countries to protect human health and to mitigate the impacts of harmful algal blooms (HABs) on the aquaculture industry. Several amphidomatacean species have been confirmed in Irish coastal waters, including the azaspiracid-producing species Azadinium spinosum and Amphidoma languida. Biogeographic distribution studies have been hampered by the fact that these small, armoured dinoflagellates share remarkably similar morphologies when observed by light microscopy. The recent releases of species-specific molecular detection assays have, in this context, been welcome developments. A survey of the south west and west coasts of Ireland was carried out in August 2017 to investigate the late summer distribution of toxic amphidomataceans and azaspiracid toxins. Azadinium spinosum and Am. languida were detected in 83% of samples in the southwest along the Crease Line and Bantry Bay transects between 20 and 70 m depth, with maximal cell concentrations of 7000 and 470,000 cells/L, respectively. Azaspiracid concentrations were well aligned with the distributions of Az. spinosum and Am. languida, up to 1.1 ng/L and 4.9 ng/L for combined AZA-1, -2, -33, and combined AZA-38, -39, respectively. Although a snapshot in time, this survey provides new insights in the late summer prominence of AZAs and AZA-producing species in the southwest of Ireland, where major shellfish aquaculture operations are located. Results showed a substantial overlap in the distribution of amphidomatacean species in the area and provide valuable baseline information in the context of ongoing monitoring efforts of toxigenic amphidomataceans in the region., (© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2022
- Full Text
- View/download PDF
37. Does Competition Benefit Complements? Evidence from Airlines and Hotels.
- Author
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Forbes, Silke J. and Kosová, Renáta
- Subjects
OCCUPANCY rates ,HOTELS ,MARKET design & structure (Economics) ,BUSINESS planning ,GENERATIVE adversarial networks ,PRICES - Abstract
We analyze how changes in the market structure of one industry—airlines—affect the performance of firms in a complementary industry—hotels—using an instrumental variables strategy to account for potential correlation between unobserved shocks to both markets. We find that more intense airline competition boosts hotel performance across all standard measures: price, occupancy rate, and revenue per available room. Spillovers vary across hotel quality and passenger type: Lower-quality branded hotels serving more price-sensitive travelers, most likely brought into the market because of more intense airline competition, benefit the most. However, performance spillovers do not translate into higher hotel entry. This paper was accepted by Joshua Gans, business strategy. Supplemental Material: The data files are available at https://doi.org/10.1287/mnsc.2022.4568. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
38. Simultaneous Quantification of Spatial Genome Positioning and Transcriptomics in Single Cells with scDamT-Seq
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Silke J A, Lochs and Jop, Kind
- Subjects
Mammals ,Genome ,Animals ,Proteins ,DNA ,Single-Cell Analysis ,Transcriptome - Abstract
Spatial genome organization is considered to play an important role in mammalian cells, by guiding gene expression programs and supporting lineage specification. Yet it is still an outstanding question in the field what the direct impact of spatial genome organization on gene expression is. To elucidate this relationship further, we have recently developed scDamT-seq, a method that simultaneously quantifies protein-DNA interactions and transcriptomes in single cells. This method efficiently combines two preexisting methods: DamID for measuring protein-DNA contacts and CEL-Seq2 for quantification of the transcriptome in single cells. scDamT-seq has been successfully applied to measure DNA contacts with the nuclear lamina, while at the same time revealing the effect of these contacts on gene expression. This method is applicable to many different proteins of interest and can thereby aid in studying the relationship between protein-DNA interactions and gene expression in single cells.
- Published
- 2022
39. Lamina Associated Domains and Gene Regulation in Development and Cancer
- Author
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Silke J. A. Lochs, Samy Kefalopoulou, and Jop Kind
- Subjects
nuclear lamina ,lamina associated domain ,gene regulation ,heterochromatin ,lamin ,DNA methylation ,development ,cancer ,senescence ,Cytology ,QH573-671 - Abstract
The nuclear lamina (NL) is a thin meshwork of filaments that lines the inner nuclear membrane, thereby providing a platform for chromatin binding and supporting genome organization. Genomic regions contacting the NL are lamina associated domains (LADs), which contain thousands of genes that are lowly transcribed, and enriched for repressive histone modifications. LADs are dynamic structures that shift spatial positioning in accordance with cell-type specific gene expression changes during differentiation and development. Furthermore, recent studies have linked the disruption of LADs and alterations in the epigenome with the onset of diseases such as cancer. Here we focus on the role of LADs and the NL in gene regulation during development and cancer.
- Published
- 2019
- Full Text
- View/download PDF
40. cIAPs control RIPK1 kinase activity-dependent and -independent cell death and tissue inflammation.
- Author
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Schorn F, Werthenbach JP, Hoffmann M, Daoud M, Stachelscheid J, Schiffmann LM, Hildebrandt X, Lyu SI, Peltzer N, Quaas A, Vucic D, Silke J, Pasparakis M, and Kashkar H
- Subjects
- Animals, Mice, Cell Death, Apoptosis, Inflammation genetics, Inflammation metabolism, Tumor Necrosis Factor-alpha genetics, Tumor Necrosis Factor-alpha pharmacology, Inhibitor of Apoptosis Proteins genetics, Inhibitor of Apoptosis Proteins metabolism, Receptors, Tumor Necrosis Factor, Type I genetics, Receptors, Tumor Necrosis Factor, Type I metabolism
- Abstract
Cellular inhibitor of apoptosis proteins (cIAPs) are RING-containing E3 ubiquitin ligases that ubiquitylate receptor-interacting protein kinase 1 (RIPK1) to regulate TNF signalling. Here, we established mice simultaneously expressing enzymatically inactive cIAP1/2 variants, bearing mutations in the RING domains of cIAP1/2 (cIAP1/2 mutant RING, cIAP1/2
MutR ). cIap1/2MutR/MutR mice died during embryonic development due to RIPK1-mediated apoptosis. While expression of kinase-inactive RIPK1D138N rescued embryonic development, Ripk1D138N/D138N /cIap1/2MutR/MutR mice developed systemic inflammation and died postweaning. Cells expressing cIAP1/2MutR and RIPK1D138N were still susceptible to TNF-induced apoptosis and necroptosis, implying additional kinase-independent RIPK1 activities in regulating TNF signalling. Although further ablation of Ripk3 did not lead to any phenotypic improvement, Tnfr1 gene knock-out prevented early onset of systemic inflammation and premature mortality, indicating that cIAPs control TNFR1-mediated toxicity independent of RIPK1 and RIPK3. Beyond providing novel molecular insights into TNF-signalling, the mouse model established in this study can serve as a useful tool to further evaluate ongoing therapeutic protocols using inhibitors of TNF, cIAPs and RIPK1., (© 2023 The Authors. Published under the terms of the CC BY NC ND 4.0 license.)- Published
- 2023
- Full Text
- View/download PDF
41. A common human MLKL polymorphism confers resistance to negative regulation by phosphorylation.
- Author
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Garnish SE, Martin KR, Kauppi M, Jackson VE, Ambrose R, Eng VV, Chiou S, Meng Y, Frank D, Tovey Crutchfield EC, Patel KM, Jacobsen AV, Atkin-Smith GK, Di Rago L, Doerflinger M, Horne CR, Hall C, Young SN, Cook M, Athanasopoulos V, Vinuesa CG, Lawlor KE, Wicks IP, Ebert G, Ng AP, Slade CA, Pearson JS, Samson AL, Silke J, Murphy JM, and Hildebrand JM
- Subjects
- Humans, Animals, Mice, Phosphorylation, Cell Membrane metabolism, Mutation, Transcription Factors metabolism, Receptor-Interacting Protein Serine-Threonine Kinases metabolism, Protein Kinases genetics, Protein Kinases metabolism, Apoptosis
- Abstract
Across the globe, 2-3% of humans carry the p.Ser132Pro single nucleotide polymorphism in MLKL, the terminal effector protein of the inflammatory form of programmed cell death, necroptosis. Here we show that this substitution confers a gain in necroptotic function in human cells, with more rapid accumulation of activated MLKL
S132P in biological membranes and MLKLS132P overriding pharmacological and endogenous inhibition of MLKL. In mouse cells, the equivalent Mlkl S131P mutation confers a gene dosage dependent reduction in sensitivity to TNF-induced necroptosis in both hematopoietic and non-hematopoietic cells, but enhanced sensitivity to IFN-β induced death in non-hematopoietic cells. In vivo, MlklS131P homozygosity reduces the capacity to clear Salmonella from major organs and retards recovery of hematopoietic stem cells. Thus, by dysregulating necroptosis, the S131P substitution impairs the return to homeostasis after systemic challenge. Present day carriers of the MLKL S132P polymorphism may be the key to understanding how MLKL and necroptosis modulate the progression of complex polygenic human disease., (© 2023. Springer Nature Limited.)- Published
- 2023
- Full Text
- View/download PDF
42. Doctor switching costs
- Author
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Gordon B. Dahl and Silke J. Forbes
- Subjects
Economics and Econometrics ,Finance - Published
- 2023
43. 720 Cell-type resolved spatial proteomics uncovers a novel actionable therapeutic target in toxic epidermal necrolysis
- Author
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Nordmann, T., Anderton, H., Hasegawa, A., Schweizer, L., Zhang, P., Stadler, P., Sinha, A., Andreas, M., Florian, R., Maximilian, Z., Satoh, T.K., Saito, Y., Gong, T., Thielert, M., Kimura, H., Nguyen, H., Levesque, M., Murray, P., Ingen-Housz-Oro, S., Mund, A., Abe, R., Silke, J., Ji, C., French, L.E., and Mann, M.
- Published
- 2024
- Full Text
- View/download PDF
44. Development of NanoLuc-targeting protein degraders and a universal reporter system to benchmark tag-targeted degradation platforms
- Author
-
Grohmann, C, Magtoto, CM, Walker, JR, Chua, NK, Gabrielyan, A, Hall, M, Cobbold, SA, Mieruszynski, S, Brzozowski, M, Simpson, DS, Dong, H, Dorizzi, B, Jacobsen, A, Morrish, E, Silke, N, Murphy, JM, Heath, JK, Testa, A, Maniaci, C, Ciulli, A, Lessene, G, Silke, J, Feltham, R, Grohmann, C, Magtoto, CM, Walker, JR, Chua, NK, Gabrielyan, A, Hall, M, Cobbold, SA, Mieruszynski, S, Brzozowski, M, Simpson, DS, Dong, H, Dorizzi, B, Jacobsen, A, Morrish, E, Silke, N, Murphy, JM, Heath, JK, Testa, A, Maniaci, C, Ciulli, A, Lessene, G, Silke, J, and Feltham, R
- Abstract
Modulation of protein abundance using tag-Targeted Protein Degrader (tTPD) systems targeting FKBP12F36V (dTAGs) or HaloTag7 (HaloPROTACs) are powerful approaches for preclinical target validation. Interchanging tags and tag-targeting degraders is important to achieve efficient substrate degradation, yet limited degrader/tag pairs are available and side-by-side comparisons have not been performed. To expand the tTPD repertoire we developed catalytic NanoLuc-targeting PROTACs (NanoTACs) to hijack the CRL4CRBN complex and degrade NanoLuc tagged substrates, enabling rapid luminescence-based degradation screening. To benchmark NanoTACs against existing tTPD systems we use an interchangeable reporter system to comparatively test optimal degrader/tag pairs. Overall, we find the dTAG system exhibits superior degradation. To align tag-induced degradation with physiology we demonstrate that NanoTACs limit MLKL-driven necroptosis. In this work we extend the tTPD platform to include NanoTACs adding flexibility to tTPD studies, and benchmark each tTPD system to highlight the importance of comparing each system against each substrate.
- Published
- 2022
45. The Lck inhibitor, AMG-47a, blocks necroptosis and implicates RIPK1 in signalling downstream of MLKL
- Author
-
Jacobsen, A, Pierotti, CL, Lowes, KN, Au, AE, Zhang, Y, Etemadi, N, Fitzgibbon, C, Kersten, WJA, Samson, AL, van Delft, MF, Huang, DCS, Sabroux, HJ, Lessene, G, Silke, J, Murphy, JM, Jacobsen, A, Pierotti, CL, Lowes, KN, Au, AE, Zhang, Y, Etemadi, N, Fitzgibbon, C, Kersten, WJA, Samson, AL, van Delft, MF, Huang, DCS, Sabroux, HJ, Lessene, G, Silke, J, and Murphy, JM
- Abstract
Necroptosis is a form of caspase-independent programmed cell death that arises from disruption of cell membranes by the mixed lineage kinase domain-like (MLKL) pseudokinase after its activation by the upstream kinases, receptor interacting protein kinase (RIPK)-1 and RIPK3, within a complex known as the necrosome. Dysregulated necroptosis has been implicated in numerous inflammatory pathologies. As such, new small molecule necroptosis inhibitors are of great interest, particularly ones that operate downstream of MLKL activation, where the pathway is less well defined. To better understand the mechanisms involved in necroptosis downstream of MLKL activation, and potentially uncover new targets for inhibition, we screened known kinase inhibitors against an activated mouse MLKL mutant, leading us to identify the lymphocyte-specific protein tyrosine kinase (Lck) inhibitor AMG-47a as an inhibitor of necroptosis. We show that AMG-47a interacts with both RIPK1 and RIPK3, that its ability to protect from cell death is dependent on the strength of the necroptotic stimulus, and that it blocks necroptosis most effectively in human cells. Moreover, in human cell lines, we demonstrate that AMG-47a can protect against cell death caused by forced dimerisation of MLKL truncation mutants in the absence of any upstream signalling, validating that it targets a process downstream of MLKL activation. Surprisingly, however, we also found that the cell death driven by activated MLKL in this model was completely dependent on the presence of RIPK1, and to a lesser extent RIPK3, although it was not affected by known inhibitors of these kinases. Together, these results suggest an additional role for RIPK1, or the necrosome, in mediating human necroptosis after MLKL is phosphorylated by RIPK3 and provide further insight into reported differences in the progression of necroptosis between mouse and human cells.
- Published
- 2022
46. Langerhans cells are an essential cellular intermediary in chronic dermatitis
- Author
-
Anderton, H, Chopin, M, Dawson, CA, Nutt, SL, Whitehead, L, Silke, N, Lalaloui, N, Silke, J, Anderton, H, Chopin, M, Dawson, CA, Nutt, SL, Whitehead, L, Silke, N, Lalaloui, N, and Silke, J
- Abstract
SHARPIN regulates signaling from the tumor necrosis factor (TNF) superfamily and pattern-recognition receptors. An inactivating Sharpin mutation in mice causes TNF-mediated dermatitis. Blocking cell death prevents the phenotype, implicating TNFR1-induced cell death in causing the skin disease. However, the source of TNF that drives dermatitis is unknown. Immune cells are a potent source of TNF in vivo and feature prominently in the skin pathology; however, T cells, B cells, and eosinophils are dispensable for the skin phenotype. We use targeted in vivo cell ablation, immune profiling, and extensive imaging to identify immune populations driving dermatitis. We find that systemic depletion of Langerin+ cells significantly reduces disease severity. This is enhanced in mice that lack Langerhans cells (LCs) from soon after birth. Reconstitution of LC-depleted Sharpin mutant mice with TNF-deficient LCs prevents dermatitis, implicating LCs as a potential cellular source of pathogenic TNF and highlighting a T cell-independent role in driving skin inflammation.
- Published
- 2022
47. Digesting the Role of JAK-STAT and Cytokine Signaling in Oral and Gastric Cancers
- Author
-
Ni, Y, Low, JT, Silke, J, O'Reilly, LA, Ni, Y, Low, JT, Silke, J, and O'Reilly, LA
- Abstract
When small proteins such as cytokines bind to their associated receptors on the plasma membrane, they can activate multiple internal signaling cascades allowing information from one cell to affect another. Frequently the signaling cascade leads to a change in gene expression that can affect cell functions such as proliferation, differentiation and homeostasis. The Janus kinase-signal transducer and activator of transcription (JAK-STAT) and the tumor necrosis factor receptor (TNFR) are the pivotal mechanisms employed for such communication. When deregulated, the JAK-STAT and the TNF receptor signaling pathways can induce chronic inflammatory phenotypes by promoting more cytokine production. Furthermore, these signaling pathways can promote replication, survival and metastasis of cancer cells. This review will summarize the essentials of the JAK/STAT and TNF signaling pathways and their regulation and the molecular mechanisms that lead to the dysregulation of the JAK-STAT pathway. The consequences of dysregulation, as ascertained from founding work in haematopoietic malignancies to more recent research in solid oral-gastrointestinal cancers, will also be discussed. Finally, this review will highlight the development and future of therapeutic applications which modulate the JAK-STAT or the TNF signaling pathways in cancers.
- Published
- 2022
48. Tankyrase-mediated ADP-ribosylation is a regulator of TNF-induced death
- Author
-
Liu, L, Sandow, JJ, Pedrioli, DML, Samson, AL, Silke, N, Kratina, T, Ambrose, RL, Doerflinger, M, Hu, Z, Morrish, E, Chau, D, Kueh, AJ, Fitzibbon, C, Pellegrini, M, Pearson, JS, Hottiger, MO, Webb, A, Lalaoui, N, Silke, J, Liu, L, Sandow, JJ, Pedrioli, DML, Samson, AL, Silke, N, Kratina, T, Ambrose, RL, Doerflinger, M, Hu, Z, Morrish, E, Chau, D, Kueh, AJ, Fitzibbon, C, Pellegrini, M, Pearson, JS, Hottiger, MO, Webb, A, Lalaoui, N, and Silke, J
- Abstract
Tumor necrosis factor (TNF) is a key component of the innate immune response. Upon binding to its receptor, TNFR1, it promotes production of other cytokines via a membrane-bound complex 1 or induces cell death via a cytosolic complex 2. To understand how TNF-induced cell death is regulated, we performed mass spectrometry of complex 2 and identified tankyrase-1 as a native component that, upon a death stimulus, mediates complex 2 poly-ADP-ribosylation (PARylation). PARylation promotes recruitment of the E3 ligase RNF146, resulting in proteasomal degradation of complex 2, thereby limiting cell death. Expression of the ADP-ribose-binding/hydrolyzing severe acute respiratory syndrome coronavirus 2 macrodomain sensitizes cells to TNF-induced death via abolishing complex 2 PARylation. This suggests that disruption of ADP-ribosylation during an infection can prime a cell to retaliate with an inflammatory cell death.
- Published
- 2022
49. Necroptosis in chronic obstructive pulmonary disease, a smoking gun? COMMENT
- Author
-
Pierotti, CL, Silke, J, Pierotti, CL, and Silke, J
- Abstract
Recent studies, reviewed here, using a cigarette smoke exposure model for chronic obstructive pulmonary disease (COPD) in Ripk3 and Mlkl knock-out mice, and correlation with patient samples, suggest necroptosis plays a pathophysiological role in COPD by promoting inflammation, airway remodeling and emphysema.
- Published
- 2022
50. Novel Methodologies for Providing In Situ Data to HAB Early Warning Systems in the European Atlantic Area: The PRIMROSE Experience
- Author
-
Ruiz-Villarreal, Manuel, Sourisseau, M., Anderson, P., Cusack, C., Neira, P., Silke, J., Rodríguez Hernández, Francisco José, Ben-Gigirey, Begoña, Whyte, C., Giraudeau-Potel, S., Quemener, L., Arthur, G., Davidson, K., Ruiz-Villarreal, Manuel, Sourisseau, M., Anderson, P., Cusack, C., Neira, P., Silke, J., Rodríguez Hernández, Francisco José, Ben-Gigirey, Begoña, Whyte, C., Giraudeau-Potel, S., Quemener, L., Arthur, G., and Davidson, K.
- Abstract
Harmful algal blooms (HABs) cause harm to human health or hinder sustainable use of the marine environment in Blue Economy sectors. HABs are temporally and spatially variable and hence their mitigation is closely linked to effective early warning. The European Union (EU) Interreg Atlantic Area project “PRIMROSE”, Predicting Risk and Impact of Harmful Events on the Aquaculture Sector, was focused on the joint development of HAB early warning systems in different regions along the European Atlantic Area. Advancement of the existing HAB forecasting systems requires development of forecasting tools, improvements in data flow and processing, but also additional data inputs to assess the distribution of HAB species, especially in areas away from national monitoring stations, usually located near aquaculture sites. In this contribution, we review different novel technologies for acquiring HAB data and report on the experience gained in several novel local data collection exercises performed during the project. Demonstrations include the deployment of autonomous imaging flow cytometry (IFC) sensors near two aquaculture areas: a mooring in the Daoulas estuary in the Bay of Brest and pumping from a bay in the Shetland Islands to an inland IFC; and several drone deployments, both of Unmanned Aerial Vehicles (UAV) and of Autonomous Surface vehicles (ASVs). Additionally, we have reviewed sampling approaches potentially relevant for HAB early warning including protocols for opportunistic water sampling by coastguard agencies. Experiences in the determination of marine biotoxins in non-traditional vectors and how they could complement standard routine HAB monitoring are also considered.
- Published
- 2022
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