113 results on '"Schauss, P."'
Search Results
2. Visuals of Climate Change in School Textbooks
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Mareike Schauss, Eva Nöthen, Marie-Paulina Ottosander, and Sandra Sprenger
- Abstract
With the "pictorial turn", the picture has gained a new significance as a medium. It is impossible to imagine a digitalized world affected by mass media without pictures. While there are several studies on the impact of pictures in the discourse on climate change in the media, there has been no analysis of the visual representation of climate change in textbooks, which remain an important teaching medium. The aim of this study is to identify the visual representations in textbooks in terms of form, image theme and motif related to the topic of climate change. The procedure is based on the method of qualitative content analysis. The results show that mainly photos, graphics and diagrams are used, whose contents differ from those of the media coverage. Besides diagrams and models, the impacts of climate change and the topic of nature are most frequently depicted. Representations of mitigation measures that would promote perceived self-efficacy are underrepresented in the textbooks studied.
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- 2024
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3. Quantum gas microscopy of a geometrically frustrated Hubbard system
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Mongkolkiattichai, Jirayu, Liu, Liyu, Garwood, Davis, Yang, Jin, and Schauss, Peter
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Condensed Matter - Quantum Gases ,Condensed Matter - Strongly Correlated Electrons ,Physics - Atomic Physics - Abstract
Geometrically frustrated many-particle quantum systems are notoriously hard to study numerically but are of profound interest because of their unusual properties and emergent phenomena. In these systems energetic constraints cannot be minimized simultaneously, leading to large ground-state degeneracy and a variety of exotic quantum phases. Here, we present a platform that enables unprecedentedly detailed experimental exploration of geometrically frustrated electronic systems on lattices with triangular geometry. We demonstrate the first realization of triangular atomic Hubbard systems, directly image Mott insulators in the triangular geometry with single-atom and single-site resolution, and measure antiferromagnetic spin-spin correlations for all nearest neighbors allowing for thermometry. This platform provides a powerful new approach for studying exotic quantum magnetism and direct detection of quantum spin liquid signatures in Hubbard systems., Comment: 13 pages, 10 figures
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- 2022
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4. A Probabilistic Call-by-Need Lambda-Calculus -- Extended Version
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Sabel, David, Schmidt-Schauß, Manfred, and Maio, Luca
- Subjects
Computer Science - Logic in Computer Science ,03B70, 68N18, 03B40 ,F.3.2 - Abstract
To support the understanding of declarative probabilistic programming languages, we introduce a lambda-calculus with a fair binary probabilistic choice that chooses between its arguments with equal probability. The reduction strategy of the calculus is a call-by-need strategy that performs lazy evaluation and implements sharing by recursive let-expressions. Expected convergence of expressions is the limit of the sum of all successful reduction outputs weighted by their probability. We use contextual equivalence as program semantics: two expressions are contextually equivalent if and only if the expected convergence of the expressions plugged into any program context is always the same. We develop and illustrate techniques to prove equivalences including a context lemma, two derived criteria to show equivalences and a syntactic diagram-based method. This finally enables us to show correctness of a large set of program transformations with respect to the contextual equivalence., Comment: 18 pages, 11 figures
- Published
- 2022
5. Site-resolved observables in the doped spin-imbalanced triangular Hubbard model
- Author
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Garwood, Davis, Mongkolkiattichai, Jirayu, Liu, Liyu, Yang, Jin, and Schauss, Peter
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Condensed Matter - Quantum Gases ,Condensed Matter - Strongly Correlated Electrons - Abstract
The suppression of antiferromagnetic ordering in geometrically frustrated Hubbard models leads to a variety of exotic quantum phases including quantum spin liquids and chiral states. Here, we focus on the Hubbard model on one of the simplest frustrated lattice geometries, a triangular lattice. Motivated by the recent realization of ultracold fermionic atoms in triangular optical lattices, we study the properties of the triangular-lattice Hubbard model through a Numerical Linked-Cluster Expansion algorithm. We investigate the Mott insulator transition finding a critical interaction $U_c/t = 7.0(2)$ and use spatial two- and three-point correlation functions to explore doped and imbalanced systems. Our results demonstrate that many interesting features occur at temperatures previously obtained for ultracold fermions in optical lattices and are accessible by upcoming experiments. Our calculations will be helpful for thermometry in ultracold atom quantum simulators and can guide experimental searches for exotic quantum phases in atomic triangular Hubbard quantum simulators., Comment: 9 pages, 10 figures
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- 2022
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6. A Quasi-Experimental Design: Examining the Power of Hope and Grit with Academic Success and Persistence in First-Year STEM Students
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Monica Schauss
- Abstract
This quantitative study examined grit and hope scores with a population of first-year Science, Technology and Engineering (STEM) students. The researcher strived to understand if higher grit and hope scores correlate with higher grade point averages (GPA) and persistence in STEM among first-year STEM students enrolled in a mid-sized, suburban, private research institution in the northeastern United States. Nationally of the college student's pursuing higher education degrees, 48% pursuing a STEM bachelor's degree and 69% pursuing a STEM associate degree will switch their major within their first or second year. Over the last few years, the United States has been falling behind in STEM proficiency. To address this glaring gap, the United States will need approximately 1 million more STEM workers than the United States is prepared to produce. With this present study the researcher hypothesized that grit would predict hope and academic success within first-year STEM students. First-year STEM students were given a survey containing the Grit-S Scale and the Adult Hope Scale (AHS) to measure both grit and hope. The researcher utilized statistical analysis to analyze the data obtained from this study. Results include, total hope and total grit were significantly correlated with one another as well as hope and perseverance of effort (POE), and POE and agency. Agency was found to be a significant predictor as well as the highest predictor of first semester GPA among first-year STEM students. Additionally, students who exhibited high hope earned significantly higher first semester GPAs than their low hope peers. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2023
7. Structural Discrimination of Phosphate Contact Ion Pairs in Water by Femtosecond 2D-IR Spectroscopy
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Kundu, Achintya, Schauss, Jakob, Fingerhut, Benjamin P., and Elsaesser, Thomas
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Physics - Chemical Physics - Abstract
The distinct structures of contact ion pairs in water are identified. Nonlinear infrared (IR) spectroscopy and theoretical calculations allow for the separation and assignment of spectral features and interactions.
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- 2021
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8. Impact of RNA Melting on Hydrating Water Structure Mapped by Femtosecond 2D-IR Spectroscopy
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Fingerhut, Benjamin P., Kundu, Achintya, Schauss, Jakob, and Elsaesser, Thomas
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Physics - Chemical Physics ,Condensed Matter - Soft Condensed Matter - Abstract
We discern hydration geometries around the sugar-phosphate-backbone of an RNA double helix at the molecular level. RNA disordering upon melting is connected with a transition from ordered water structures towards local phosphate group hydration shells.
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- 2021
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9. Phosphate Vibrations Probe Electric Fields in Hydrated Biomolecules: Spectroscopy, Dynamics, and Interactions
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Elsaesser, Thomas, Schauss, Jakob, Kundu, Achintya, and Fingerhut, Benjamin P.
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Physics - Chemical Physics - Abstract
Electric interactions have a strong impact on the structure and dynamics of biomolecules in their native water environment. Given the variety of water arrangements in hydration shells and the femto- to subnanosecond time range of structural fluctuations, there is a strong quest for sensitive noninvasive probes of local electric fields. The stretching vibrations of phosphate groups, in particular the asymmetric (PO2)- stretching vibration {\nu}AS(PO2)-, allow for a quantitative mapping of dynamic electric fields in aqueous environments via a field-induced redshift of their transition frequencies and concomitant changes of vibrational line shapes. We present a systematic study of {\nu}AS(PO2)- excitations in molecular systems of increasing complexity, including dimethyl phosphate (DMP), short DNA and RNA duplex structures, and transfer RNA (tRNA) in water. A combination of linear infrared absorption, two-dimensional infrared (2D-IR) spectroscopy, and molecular dynamics (MD) simulations gives quantitative insight in electric-field tuning rates of vibrational frequencies, electric field and fluctuation amplitudes, and molecular interaction geometries. Beyond neat water environments, the formation of contact ion pairs of phosphate groups with Mg2+ ions is demonstrated via frequency upshifts of the {\nu}AS(PO2)- vibration, resulting in a distinct vibrational band. The frequency positions of contact geometries are determined by an interplay of attractive electric and repulsive exchange interactions., Comment: 9 pages, 6 figures
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- 2021
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10. Magnesium Contact Ions Stabilize the Tertiary Structure of Transfer RNA: Electrostatics Mapped by Two-Dimensional Infrared Spectra and Theoretical Simulations
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Schauss, Jakob, Kundu, Achintya, Fingerhut, Benjamin P., and Elsaesser, Thomas
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Physics - Chemical Physics ,Condensed Matter - Soft Condensed Matter ,Physics - Biological Physics - Abstract
Ions interacting with hydrated RNA play a central role in defining its secondary and tertiary structure. While spatial arrangements of ions, water molecules, and phosphate groups have been inferred from X-ray studies, the role of electrostatic and other noncovalent interactions in stabilizing compact folded RNA structures is not fully understood at the molecular level. Here, we demonstrate that contact ion pairs of magnesium (Mg2+) and phosphate groups embedded in local water shells stabilize the tertiary equilibrium structure of transfer RNA (tRNA). Employing dialyzed tRNAPhe from yeast and tRNA from Escherichia coli, we follow the population of Mg2+ sites close to phosphate groups of the ribose-phosphodiester backbone step by step, combining linear and nonlinear infrared spectroscopy of phosphate vibrations with molecular dynamics simulations and ab initio vibrational frequency calculations. The formation of up to six Mg2+/phosphate contact pairs per tRNA and local field-induced reorientations of water molecules balance the phosphate-phosphate repulsion in nonhelical parts of tRNA, thus stabilizing the folded structure electrostatically. Such geometries display limited sub-picosecond fluctuations in the arrangement of water molecules and ion residence times longer than 1 {\mu}s. At higher Mg2+ excess, the number of contact ion pairs per tRNA saturates around 6 and weakly interacting ions prevail. Our results suggest a predominance of contact ion pairs over long-range coupling of the ion atmosphere and the biomolecule in defining and stabilizing the tertiary structure of tRNA., Comment: 7 pages, 4 figures
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- 2021
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11. Minimal Translations from Synchronous Communication to Synchronizing Locks
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Schmidt-Schauß, Manfred and Sabel, David
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Computer Science - Logic in Computer Science ,F.3.2 ,F.1.2 ,D.3.1 - Abstract
In order to understand the relative expressive power of larger concurrent programming languages, we analyze translations of small process calculi which model the communication and synchronization of concurrent processes. The source language SYNCSIMPLE is a minimalistic model for message passing concurrency while the target language LOCKSIMPLE is a minimalistic model for shared memory concurrency. The former is a calculus with synchronous communication of processes, while the latter has synchronizing mutable locations - called locks - that behave similarly to binary semaphores. The criteria for correctness of translations is that they preserve and reflect may-termination and must-termination of the processes. We show that there is no correct compositional translation from SYNCSIMPLE to LOCKSIMPLE that uses one or two locks, independent from the initialisation of the locks. We also show that there is a correct translation that uses three locks. Also variants of the locks are taken into account with different blocking behavior., Comment: In Proceedings EXPRESS/SOS 2021, arXiv:2108.09624. Author version at 2107.14651
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- 2021
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12. Minimal Translations from Synchronous Communication to Synchronizing Locks (Extended Version)
- Author
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Schmidt-Schauß, Manfred and Sabel, David
- Subjects
Computer Science - Logic in Computer Science - Abstract
In order to understand the relative expressive power of larger concurrent programming languages, we analyze translations of small process calculi which model the communication and synchronization of concurrent processes. The source language SYNCSIMPLE is a minimalistic model for message passing concurrency while the target language LOCKSIMPLE is a minimalistic model for shared memory concurrency. The former is a calculus with synchronous communication of processes, while the latter has synchronizing mutable locations -- called locks -- that behave similarly to binary semaphores. The criteria for correctness of translations is that they preserve and reflect may-termination and must-termination of the processes. We show that there is no correct compositional translation from SYNCSIMPLE to LOCKSIMPLE that uses one or two locks, independent from the initialisation of the locks. We also show that there is a correct translation that uses three locks. Also variants of the locks are taken into account with different blocking behavior.
- Published
- 2021
13. Site-resolved imaging of ultracold fermions in a triangular-lattice quantum gas microscope
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Yang, Jin, Liu, Liyu, Mongkolkiattichai, Jirayu, and Schauss, Peter
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Condensed Matter - Quantum Gases ,Physics - Atomic Physics - Abstract
Quantum gas microscopes have expanded the capabilities of quantum simulation of Hubbard models by enabling the study of spatial spin and density correlations in square lattices. However, quantum gas microscopes have not been realized for fermionic atoms in frustrated geometries. Here, we demonstrate the single-atom resolved imaging of ultracold fermionic $^{6}$Li atoms in a triangular optical lattice with a lattice constant of 1003 nm. The optical lattice is formed by a recycled narrow-linewidth, high-power laser combined with a light sheet to allow for Raman sideband cooling on the $D_1$ line. We optically resolve single atoms on individual lattice sites using a high-resolution objective to collect scattered photons while cooling them close to the two-dimensional ground vibrational level in each lattice site. By reconstructing the lattice occupation, we measure an imaging fidelity of ~98%. Our new triangular lattice microscope platform for fermions clears the path for studying spin-spin correlations, entanglement and dynamics of geometrically frustrated Hubbard systems which are expected to exhibit exotic emergent phenomena including spin liquids and kinetic frustration., Comment: 9 pages, 5 figures, comments welcome!
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- 2021
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14. Nominal Unification and Matching of Higher Order Expressions with Recursive Let
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Schmidt-Schauß, Manfred, Kutsia, Temur, Levy, Jordi, Villaret, Mateu, and Kutz, Yunus
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Computer Science - Logic in Computer Science ,Computer Science - Artificial Intelligence ,I.2.3 - Abstract
A sound and complete algorithm for nominal unification of higher-order expressions with a recursive let is described, and shown to run in nondeterministic polynomial time. We also explore specializations like nominal letrec-matching for expressions, for DAGs, and for garbage-free expressions and determine their complexity. We also provide a nominal unification algorithm for higher-order expressions with recursive let and atom-variables, where we show that it also runs in nondeterministic polynomial time. In addition we prove that there is a guessing strategy for nominal unification with letrec and atom-variable that is a trade-off between exponential growth and non-determinism. Nominal matching with variables representing partial letrec-environments is also shown to be in NP., Comment: 37 pages, 9 figures, This paper is an extended version of the conference publication: Manfred Schmidt-Schau{\ss} and Temur Kutsia and Jordi Levy and Mateu Villaret and Yunus Kutz, Nominal Unification of Higher Order Expressions with Recursive Let, LOPSTR-16, Lecture Notes in Computer Science 10184, Springer, p 328 -344, 2016. arXiv admin note: text overlap with arXiv:1608.03771
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- 2021
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15. Conceptualization and Evaluation of a School Project on Climate Science in the Context of Education for Sustainable Development (ESD)
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Schauss, Mareike and Sprenger, Sandra
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Anchored in the thirteenth of the Sustainable Development Goals (SDG), climate change is one of the key content areas in education for sustainable development. This evaluation study describes a school project that introduces students to scientific work and, more specifically, to scientific research methods in climate research. Using a pre-post design, the evaluation uses a scale measuring epistemological beliefs, as well as two other scales addressing the relevance of climate change in society and career prospects in the field of climate research. The quantitative questionnaire data indicate an increase in future career aspirations in the field of climate research. The qualitative interview data reveal positive changes in the understanding of science and show that an understanding of the nature of science can be promoted.
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- 2019
16. Quench Dynamics of a Fermi Gas with Strong Non-Local Interactions
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Guardado-Sanchez, Elmer, Spar, Benjamin M., Schauss, Peter, Belyansky, Ron, Young, Jeremy T., Bienias, Przemyslaw, Gorshkov, Alexey V., Iadecola, Thomas, and Bakr, Waseem S.
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Condensed Matter - Quantum Gases ,Physics - Atomic Physics - Abstract
We induce strong non-local interactions in a 2D Fermi gas in an optical lattice using Rydberg dressing. The system is approximately described by a $t-V$ model on a square lattice where the fermions experience isotropic nearest-neighbor interactions and are free to hop only along one direction. We measure the interactions using many-body Ramsey interferometry and study the lifetime of the gas in the presence of tunneling, finding that tunneling does not reduce the lifetime. To probe the interplay of non-local interactions with tunneling, we investigate the short-time relaxation dynamics of charge density waves in the gas. We find that strong nearest-neighbor interactions slow down the relaxation. Our work opens the door for quantum simulations of systems with strong non-local interactions such as extended Fermi-Hubbard models., Comment: 12 pages, 6 figures in main text, 3 figures in appendix
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- 2020
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17. Correctly Implementing Synchronous Message Passing in the Pi-Calculus By Concurrent Haskell's MVars
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Schmidt-Schauß, Manfred and Sabel, David
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Computer Science - Programming Languages ,Computer Science - Logic in Computer Science ,D.3.1 ,F.1.2 ,F.3.2 - Abstract
Comparison of concurrent programming languages and correctness of program transformations in concurrency are the focus of this research. As criterion we use contextual semantics adapted to concurrency, where may -- as well as should -- convergence are observed. We investigate the relation between the synchronous pi-calculus and a core language of Concurrent Haskell (CH). The contextual semantics is on the one hand forgiving with respect to the details of the operational semantics, and on the other hand implies strong requirements for the interplay between the processes after translation. Our result is that CH embraces the synchronous pi-calculus. Our main task is to find and prove correctness of encodings of pi-calculus channels by CH's concurrency primitives, which are MVars. They behave like (blocking) 1-place buffers modelling the shared-memory. The first developed translation uses an extra private MVar for every communication.We also automatically generate and check potentially correct translations that reuse the MVars where one MVar contains the message and two additional MVars for synchronization are used to model the synchronized communication of a single channel in the pi-calculus.Our automated experimental results lead to the conjecture that one additional MVar is insufficient., Comment: In Proceedings EXPRESS/SOS 2020, arXiv:2008.12414
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- 2020
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18. Quantum wakes in lattice fermions
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Wampler, Matthew, Schauss, Peter, Kolomeisky, Eugene B, and Klich, Israel
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Condensed Matter - Quantum Gases ,Condensed Matter - Mesoscale and Nanoscale Physics ,Physics - Fluid Dynamics ,Quantum Physics - Abstract
The wake following a vessel in water is a signature interference effect of moving bodies, and, as described by Lord Kelvin, is contained within a constant universal angle. However, wakes may accompany different kinds of moving disturbances in other situations and even in lattice systems. Here, we investigate the effect of moving disturbances on a Fermi lattice gas of ultracold atoms and analyze the novel types of wake patterns that may occur. We show how at half-filling, the wake angles are dominated by the ratio of the hopping energy to the velocity of the disturbance and on the angle of motion relative to the lattice direction. Moreover, we study the difference between wakes left behind a moving particle detector versus that of a moving potential or a moving particle extractor. We show that these scenarios exhibit dramatically different behavior at half-filling, with the "measurement wake" following an idealized detector vanishing, though the motion of the detector does still leaves a trace through a "fluctuation wake." Finally, we discuss the experimental requirements to observe our predictions in ultracold fermionic atoms in optical lattices.
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- 2020
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19. Aqueous Contact Ion Pairs of Phosphate Groups with Na$^+$, Ca$^{2+}$ and Mg$^{2+}$ -- Structural Discrimination by Femtosecond Infrared Spectroscopy and Molecular Dynamics Simulations
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Fingerhut, Benjamin P., Schauss, Jakob, Kundu, Achintya, and Elsaesser, Thomas
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Physics - Chemical Physics - Abstract
The extent of contact and solvent shared ion pairs of phosphate groups with Na$^+$, Ca$^{2+}$ and Mg$^{2+}$ ions in aqueous environment and their relevance for the stability of polyanionic DNA and RNA structures is highly debated. Employing the asymmetric phosphate stretching vibration of dimethyl phosphate (DMP), a model system of the sugar-phosphate backbone of DNA and RNA, we present linear infrared, femtosecond infrared pump-probe and absorptive 2D-IR spectra that report on contact ion pair formation via the presence of blue shifted spectral signatures. Compared to the linear infrared spectra, the nonlinear spectra reveal contact ion pairs with increased sensitivity because the spectra accentuate differences in peak frequency, transition dipole moment strength, and excited state lifetime. The experimental results are corroborated by long time scale MD simulations, benchmarked by density functional simulations on phosphate-ion-water clusters. The microscopic interpretation reveals subtle structural differences of ion pairs formed by the phosphate group and the ions Na$^+$, Ca$^{2+}$ and Mg$^{2+}$. Intricate properties of the solvation shell around the phosphate group and the ion are essential to explain the experimental observations. The present work addresses a challenging to probe topic with the help of a model system and establishes new experimental data of contact ion pair formation, thereby underlining the potential of nonlinear 2D-IR spectroscopy as an analytical probe of phosphate-ion interactions in complex biological systems.
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- 2020
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20. Change of Hydration Patterns upon RNA Melting Probed by Excitations of Phosphate Backbone Vibrations
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Kundu, Achintya, Schauss, Jakob, Fingerhut, Benjamin P., and Elsaesser, Thomas
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Physics - Chemical Physics - Abstract
The water hydration shell has decisive impact on the structural and functional properties of RNA. Changes of RNA structure upon melting and in biochemical processes are accompanied by a change of hydration patterns, a process which is barely characterized. To discern hydration geometries around the backbone phosphate groups of an RNA double helix at the molecular level, we combine two-dimensional infrared spectroscopy of phosphate vibrations with theoretical simulations. There are three distinct coexisting hydration motifs of the RNA A-helix, an ordered chain-like arrangement of water molecules with links between neighboring phosphate groups, separate local hydration shells of up to six water molecules, and hydrated phosphate/counterion contact pairs. RNA disordering upon melting is connected with a transition from predominant ordered water structures to local hydration shells around phosphate units. Structural fluctuations are dominated by librational water motions occurring on a 300 fs time scale, without exchange between hydration motifs.
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- 2020
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21. Application of the adverse outcome pathway concept for investigating developmental neurotoxicity potential of Chinese herbal medicines by using human neural progenitor cells in vitro
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Klose, Jördis, Li, Lu, Pahl, Melanie, Bendt, Farina, Hübenthal, Ulrike, Jüngst, Christian, Petzsch, Patrick, Schauss, Astrid, Köhrer, Karl, Leung, Ping Chung, Wang, Chi Chiu, Koch, Katharina, Tigges, Julia, Fan, Xiaohui, and Fritsche, Ellen
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- 2023
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22. Contact Ion Pairs of Phosphate Groups in Water -- Two-Dimensional Infrared Spectroscopy of Dimethyl-Phosphate and Ab-Initio Simulations
- Author
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Schauss, Jakob, Kundu, Achintya, Fingerhut, Benjamin P., and Elsaesser, Thomas
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Physics - Chemical Physics - Abstract
The interaction of phosphate groups with ions in an aqueous environment has a strong impact on the structure and folding processes of DNA and RNA. The dynamic variety of ionic arrangements, including both contact pairs and water separated ions, and the molecular coupling mechanisms are far from being understood. In a combined experimental and theoretical approach, we address the properties of contact ion pairs of the prototypical system dimethyl-phosphate with Na$^+$, Ca$^{2+}$, and Mg$^{2+}$ ions in water. Linear and femtosecond two-dimensional infrared (2D-IR) spectroscopy of the asymmetric (PO$_2$)$^-$ stretching vibration separates and characterizes the different species via their blue-shifted vibrational signatures and 2D-IR lineshapes. Phosphate-magnesium contact pairs stand out as the most compact geometry while the contact pairs with Ca$^{2+}$ and Na$^+$ display a wider structural variation. Microscopic density functional theory simulations rationalize the observed frequency shifts and reveal distinct differences between the contact geometries.
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- 2019
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23. Optimizing Space of Parallel Processes
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Schmidt-Schauß, Manfred and Dallmeyer, Nils
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Computer Science - Programming Languages ,Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
This paper is a contribution to exploring and analyzing space-improvements in concurrent programming languages, in particular in the functional process-calculus CHF. Space-improvements are defined as a generalization of the corresponding notion in deterministic pure functional languages. The main part of the paper is the O(n*log n) algorithm SpOptN for offline space optimization of several parallel independent processes. Applications of this algorithm are: (i) affirmation of space improving transformations for particular classes of program transformations; (ii) support of an interpreter-based method for refuting space-improvements; and (iii) as a stand-alone offline-optimizer for space (or similar resources) of parallel processes., Comment: In Proceedings WPTE 2018, arXiv:1902.07818
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- 2019
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24. Mitochondrial membrane proteins and VPS35 orchestrate selective removal of mtDNA
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Ayesha Sen, Sebastian Kallabis, Felix Gaedke, Christian Jüngst, Julia Boix, Julian Nüchel, Kanjanamas Maliphol, Julia Hofmann, Astrid C. Schauss, Marcus Krüger, Rudolf J. Wiesner, and David Pla-Martín
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Science - Abstract
Mitochondrial quality control mechanisms prevent damage accumulation, including in mitochondrial DNA (mtDNA). Here, Sen et al. show that altered mtDNA elicits local rearrangements in mitochondrial membrane potential and cristae structure, with mtDNA eliminated through VPS35 endosomes.
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- 2022
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25. Docking and stability defects in mitofusin highlight the proteasome as a potential therapeutic target
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Ira Buntenbroich, Vincent Anton, Daniel Perez-Hernandez, Tânia Simões, Felix Gaedke, Astrid Schauss, Gunnar Dittmar, Jan Riemer, and Mafalda Escobar-Henriques
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Biological sciences ,Genetics ,Molecular biology ,Cell biology ,Science - Abstract
Summary: Defects in mitochondrial fusion are at the base of many diseases. Mitofusins power membrane-remodeling events via self-interaction and GTP hydrolysis. However, how exactly mitofusins mediate fusion of the outer membrane is still unclear. Structural studies enable tailored design of mitofusin variants, providing valuable tools to dissect this stepwise process. Here, we found that the two cysteines conserved between yeast and mammals are required for mitochondrial fusion, revealing two novel steps of the fusion cycle. C381 is dominantly required for the formation of the trans-tethering complex, before GTP hydrolysis. C805 allows stabilizing the Fzo1 protein and the trans-tethering complex, just prior to membrane fusion. Moreover, proteasomal inhibition rescued Fzo1 C805S levels and membrane fusion, suggesting a possible application for clinically approved drugs. Together, our study provides insights into how assembly or stability defects in mitofusins might cause mitofusin-associated diseases and uncovers potential therapeutic intervention by proteasomal inhibition.
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- 2023
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26. Bad metallic transport in a cold atom Fermi-Hubbard system
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Brown, Peter T., Mitra, Debayan, Guardado-Sanchez, Elmer, Nourafkan, Reza, Reymbaut, Alexis, Hébert, Charles-David, Bergeron, Simon, Tremblay, A. -M. S., Kokalj, Jure, Huse, David A., Schauss, Peter, and Bakr, Waseem S.
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Condensed Matter - Quantum Gases - Abstract
Charge transport is a revealing probe of the quantum properties of materials. Strong interactions can blur charge carriers resulting in a poorly understood "quantum soup". Here we study the conductivity of the Fermi-Hubbard model, a testing ground for strong interaction physics, in a clean quantum system - ultracold $^6$Li in a 2D optical lattice. We determine the charge diffusion constant in our system by measuring the relaxation of an imposed density modulation and modeling its decay hydrodynamically. The diffusion constant is converted to a resistivity, which exhibits a linear temperature dependence and exceeds the Mott-Ioffe-Regel limit, two characteristic signatures of a bad metal. The techniques we develop here may be applied to measurements of other transport quantities, including the optical conductivity and thermopower.
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- 2018
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27. Space Improvements and Equivalences in a Functional Core Language
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Schmidt-Schauß, Manfred and Dallmeyer, Nils
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Computer Science - Programming Languages ,F.3.2 - Abstract
We explore space improvements in LRP, a polymorphically typed call-by-need functional core language. A relaxed space measure is chosen for the maximal size usage during an evaluation. It abstracts from the details of the implementation via abstract machines, but it takes garbage collection into account and thus can be seen as a realistic approximation of space usage. The results are: a context lemma for space improving translations and for space equivalences, all but one reduction rule of the calculus are shown to be space improvements, and for the exceptional one we show bounds on the space increase. Several further program transformations are shown to be space improvements or space equivalences in particular the translation into machine expressions is a space equivalence. We also classify certain space-worsening transformations as space-leaks or as space-safe. These results are a step forward in making predictions about the change in runtime space behavior of optimizing transformations in call-by-need functional languages., Comment: In Proceedings WPTE 2017, arXiv:1802.05862
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- 2018
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28. Students' Conceptions of Uncertainties in the Context of Climate Change
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Schauss, Mareike and Sprenger, Sandra
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The issue of uncertainty about climate change as transparently communicated by scientists is integral to climate research. Both concepts - the complexity and the uncertainty of projection data - make climate research an exciting field and confront the population with major challenges. The scientific consensus of anthropogenic climate change is described, but there are also uncertainties, which for example, result from incomplete knowledge, creating tension in the field of climate research. This study provides an empirical contribution to climate change education, which is a central topic in Education for Sustainable Development (ESD), and shows how uncertainties are perceived from the students' perspective. Guided interviews were conducted with high school students using Mayring's approach of deductive category formation. We found interesting results among students in the area of uncertainties in climate modeling. Uncertainties due to limited knowledge about climate change and anthropogenic factors were less mentioned by the students, but they appeared to have much knowledge about the limits of climate modeling.
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- 2021
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29. Mitochondrial membrane proteins and VPS35 orchestrate selective removal of mtDNA
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Sen, Ayesha, Kallabis, Sebastian, Gaedke, Felix, Jüngst, Christian, Boix, Julia, Nüchel, Julian, Maliphol, Kanjanamas, Hofmann, Julia, Schauss, Astrid C., Krüger, Marcus, Wiesner, Rudolf J., and Pla-Martín, David
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- 2022
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30. Probing quench dynamics across a quantum phase transition into a 2D Ising antiferromagnet
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Guardado-Sanchez, Elmer, Brown, Peter T., Mitra, Debayan, Devakul, Trithep, Huse, David A., Schauss, Peter, and Bakr, Waseem S.
- Subjects
Quantum Physics ,Condensed Matter - Quantum Gases ,Physics - Atomic Physics - Abstract
Simulating the real-time evolution of quantum spin systems far out of equilibrium poses a major theoretical challenge, especially in more than one dimension. We experimentally explore the dynamics of a two-dimensional Ising spin system with transverse and longitudinal fields as we quench it across a quantum phase transition from a paramagnet to an antiferromagnet. We realize the system with a near unit-occupancy atomic array of over 200 atoms obtained by loading a spin-polarized band insulator of fermionic lithium into an optical lattice and induce short-range interactions by direct excitation to a low-lying Rydberg state. Using site-resolved microscopy, we probe the correlations in the system after a sudden quench from the paramagnetic state and compare our measurements to exact calculations in the regime where it is possible. We achieve many-body states with longer-range antiferromagnetic correlations by implementing a near-adiabatic quench and study the buildup of correlations as we cross the quantum phase transition at different rates.
- Published
- 2017
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31. Finite-range interacting Ising quantum magnets with Rydberg atoms in optical lattices - From Rydberg superatoms to crystallization
- Author
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Schauss, Peter
- Subjects
Physics - Atomic Physics ,Condensed Matter - Quantum Gases ,Quantum Physics - Abstract
Finite-range interacting spin models are the simplest models to study the effect of beyond nearest-neighbour interactions and access new effects caused by the range of the interactions. Recent experiments have reached the regime of dominant interactions in Ising quantum magnets via optical coupling of trapped neutral atoms to Rydberg states. This approach allows for the tunability of all relevant terms in an Ising Hamiltonian with $1/r^6$ interactions in a transverse and longitudinal field. This review summarizes the recent progress of these implementations in Rydberg lattices with site-resolved detection. The strong correlations in this quantum Ising model have been observed in several experiments up to the point of crystallization. In systems with a diameter small compared to the Rydberg blockade radius, the number of excitations is maximally one in the so-called superatom regime., Comment: 18 pages, 15 figures
- Published
- 2017
- Full Text
- View/download PDF
32. Quantum gas microscopy of an attractive Fermi-Hubbard system
- Author
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Mitra, Debayan, Brown, Peter T., Guardado-Sanchez, Elmer, Kondov, Stanimir S., Devakul, Trithep, Huse, David A., Schauss, Peter, and Bakr, Waseem S.
- Subjects
Condensed Matter - Quantum Gases ,Physics - Atomic Physics ,Quantum Physics - Abstract
The attractive Fermi-Hubbard model is the simplest theoretical model for studying pairing and superconductivity of fermions on a lattice. Although its s-wave pairing symmetry excludes it as a microscopic model for high-temperature superconductivity, it exhibits much of the relevant phenomenology, including a short-coherence length at intermediate coupling and a pseudogap regime with anomalous properties. Here we study an experimental realization of this model using a two-dimensional (2D) atomic Fermi gas in an optical lattice. Our site-resolved measurements on the normal state reveal checkerboard charge-density-wave correlations close to half-filling. A "hidden" SU(2) pseudo-spin symmetry of the Hubbard model at half-filling guarantees superfluid correlations in our system, the first evidence for such correlations in a single-band Hubbard system of ultracold fermions. Compared to the paired atom fraction, we find the charge-density-wave correlations to be a much more sensitive thermometer, useful for optimizing cooling into superfluid phases in future experiments.
- Published
- 2017
- Full Text
- View/download PDF
33. An Environment for Analyzing Space Optimizations in Call-by-Need Functional Languages
- Author
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Dallmeyer, Nils and Schmidt-Schauss, Manfred
- Subjects
Computer Science - Programming Languages ,F.4.1 ,D.3.4 - Abstract
We present an implementation of an interpreter LRPi for the call-by-need calculus LRP, based on a variant of Sestoft's abstract machine Mark 1, extended with an eager garbage collector. It is used as a tool for exact space usage analyses as a support for our investigations into space improvements of call-by-need calculi., Comment: In Proceedings WPTE 2016, arXiv:1701.00233
- Published
- 2017
- Full Text
- View/download PDF
34. Observation of canted antiferromagnetism with ultracold fermions in an optical lattice
- Author
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Brown, Peter T., Mitra, Debayan, Guardado-Sanchez, Elmer, Schauß, Peter, Kondov, Stanimir S., Khatami, Ehsan, Paiva, Thereza, Trivedi, Nandini, Huse, David A., and Bakr, Waseem S.
- Subjects
Condensed Matter - Quantum Gases - Abstract
Understanding the magnetic response of the normal state of the cuprates is considered a key piece in solving the puzzle of their high-temperature superconductivity. The essential physics of these materials is believed to be captured by the Fermi-Hubbard model, a minimal model that has been realized with cold atoms in optical lattices. Here we report on site-resolved measurements of the Fermi-Hubbard model in a spin-imbalanced atomic gas, allowing us to explore the response of the system to large effective magnetic fields. We observe short-range canted antiferromagnetism at half-filling with stronger spin correlations in the direction orthogonal to the magnetization, in contrast with the spin-balanced case where identical correlations are measured for any projection of the pseudospin. The rotational anisotropy of the spin correlators is found to increase with polarization and with distance between the spins. Away from half-filling, the polarization of the gas exhibits non-monotonic behavior with doping for strong interactions, resembling the behavior of the magnetic susceptibility in the cuprates. We compare our measurements to predictions from Determinantal Quantum Monte Carlo (DQMC) and Numerical Linked Cluster Expansion (NLCE) algorithms and find good agreement. Calculations on the doped system are near the limits of these techniques, illustrating the value of cold atom quantum simulations for studying strongly-correlated materials.
- Published
- 2016
- Full Text
- View/download PDF
35. Correction: Winter et al. Z-Disk-Associated Plectin (Isoform 1d): Spatial Arrangement, Interaction Partners, and Role in Filamin C Homeostasis. Cells 2023, 12, 1259
- Author
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Lilli Winter, Ilona Staszewska-Daca, Stefan Zittrich, Fatiha Elhamine, Michaela M. Zrelski, Katy Schmidt, Irmgard Fischer, Christian Jüngst, Astrid Schauss, Wolfgang H. Goldmann, Robert Stehle, and Gerhard Wiche
- Subjects
n/a ,Cytology ,QH573-671 - Abstract
The authors wish to make the following changes to their paper [...]
- Published
- 2023
- Full Text
- View/download PDF
36. Ultrafast transmission electron microscopy using a laser-driven field emitter: femtosecond resolution with a high coherence electron beam
- Author
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Feist, Armin, Bach, Nora, da Silva, Nara Rubiano, Danz, Thomas, Möller, Marcel, Priebe, Katharina E., Domröse, Till, Gatzmann, J. Gregor, Rost, Stefan, Schauss, Jakob, Strauch, Stefanie, Bormann, Reiner, Sivis, Murat, Schäfer, Sascha, and Ropers, Claus
- Subjects
Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed Matter - Materials Science ,Physics - Instrumentation and Detectors - Abstract
We present the development of the first ultrafast transmission electron microscope (UTEM) driven by localized photoemission from a field emitter cathode. We describe the implementation of the instrument, the photoemitter concept and the quantitative electron beam parameters achieved. Establishing a new source for ultrafast TEM, the G\"ottingen UTEM employs nano-localized linear photoemission from a Schottky emitter, which enables operation with freely tunable temporal structure, from continuous wave to femtosecond pulsed mode. Using this emission mechanism, we achieve record pulse properties in ultrafast electron microscopy of 9 {\AA} focused beam diameter, 200 fs pulse duration and 0.6 eV energy width. We illustrate the possibility to conduct ultrafast imaging, diffraction, holography and spectroscopy with this instrument and also discuss opportunities to harness quantum coherent interactions between intense laser fields and free electron beams.
- Published
- 2016
- Full Text
- View/download PDF
37. Nominal Unification of Higher Order Expressions with Recursive Let
- Author
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Schmidt-Schauß, Manfred, Kutsia, Temur, Levy, Jordi, and Villaret, Mateu
- Subjects
Computer Science - Programming Languages ,Computer Science - Logic in Computer Science - Abstract
A sound and complete algorithm for nominal unification of higher-order expressions with a recursive let is described, and shown to run in non-deterministic polynomial time. We also explore specializations like nominal letrec-matching for plain expressions and for DAGs and determine the complexity of corresponding unification problems., Comment: Pre-proceedings paper presented at the 26th International Symposium on Logic-Based Program Synthesis and Transformation (LOPSTR 2016), Edinburgh, Scotland UK, 6-8 September 2016 (arXiv:1608.02534)
- Published
- 2016
- Full Text
- View/download PDF
38. Exploring the many-body localization transition in two dimensions
- Author
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Choi, Jae-yoon, Hild, Sebastian, Zeiher, Johannes, Schauß, Peter, Rubio-Abadal, Antonio, Yefsah, Tarik, Khemani, Vedika, Huse, David A., Bloch, Immanuel, and Gross, Christian
- Subjects
Condensed Matter - Quantum Gases ,Condensed Matter - Disordered Systems and Neural Networks ,Condensed Matter - Statistical Mechanics ,Condensed Matter - Strongly Correlated Electrons - Abstract
One fundamental assumption in statistical physics is that generic closed quantum many-body systems thermalize under their own dynamics. Recently, the emergence of many-body localized systems has questioned this concept, challenging our understanding of the connection between statistical physics and quantum mechanics. Here we report on the observation of a many-body localization transition between thermal and localized phases for bosons in a two-dimensional disordered optical lattice. With our single site resolved measurements we track the relaxation dynamics of an initially prepared out-of-equilibrium density pattern and find strong evidence for a diverging length scale when approaching the localization transition. Our experiments mark the first demonstration and in-depth characterization of many-body localization in a regime not accessible with state-of-the-art simulations on classical computers., Comment: 10 pages and 9 figures
- Published
- 2016
- Full Text
- View/download PDF
39. Phase separation and pair condensation in a spin-imbalanced 2D Fermi gas
- Author
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Mitra, Debayan, Brown, Peter T., Schauß, Peter, Kondov, Stanimir S., and Bakr, Waseem S.
- Subjects
Condensed Matter - Quantum Gases ,Physics - Atomic Physics ,Quantum Physics - Abstract
We study a two-component quasi-two-dimensional Fermi gas with imbalanced spin populations. We probe the gas at different interaction strengths and polarizations by measuring the density of each spin component in the trap and the pair momentum distribution after time of flight. For a wide range of experimental parameters, we observe in-trap phase separation characterized by the appearance of a spin-balanced condensate surrounded by a polarized gas. Our momentum space measurements indicate pair condensation in the imbalanced gas even for large polarizations where phase separation vanishes, pointing to the presence of a polarized pair condensate. Our observation of zero momentum pair condensates in 2D spin-imbalanced gases opens the way to explorations of more exotic superfluid phases that occupy a large part of the phase diagram in lower dimensions.
- Published
- 2016
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- View/download PDF
40. Many-body interferometry of a Rydberg-dressed spin lattice
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Zeiher, Johannes, van Bijnen, Rick, Schauß, Peter, Hild, Sebastian, Choi, Jae-yoon, Pohl, Thomas, Bloch, Immanuel, and Gross, Christian
- Subjects
Condensed Matter - Quantum Gases ,Quantum Physics - Abstract
Ultracold atoms are an ideal platform to study strongly correlated phases of matter in and out of equilibrium. Much of the experimental progress in this field crucially relies on the control of the contact interaction between two atoms. Control of strong long-range interactions between distant ground state atoms has remained a long standing goal, opening the path towards the study of fundamentally new quantum many-body systems including frustrated or topological magnets and supersolids. Optical dressing of ground state atoms by near-resonant laser coupling to Rydberg states has been proposed as a versatile method to engineer such interactions. However, up to now the great potential of this approach for interaction control in a many-body setting has eluded experimental confirmation. Here we report the realisation of coherent Rydberg-dressing in an ultracold atomic lattice gas and directly probe the induced interaction potential using an interferometric technique with single atom sensitivity. We use this approach to implement a two-dimensional synthetic spin lattice and demonstrate its versatility by tuning the range and anisotropy of the effective spin interactions. Our measurements are in remarkable agreement with exact solutions of the many-body dynamics, providing further evidence for the high degree of accurate interaction control in these systems. Finally, we identify a collective many-body decay process, and discuss possible routes to overcome this current limitation of coherence times. Our work marks the first step towards the use of laser-controlled Rydberg interactions for the study of exotic quantum magnets in optical lattices., Comment: 18 pages, 13 figures; Version initially submitted to Nature Physics
- Published
- 2016
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- View/download PDF
41. Examining the incidence of acute stress in pediatric trauma patients
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Eraina Schauss, Kiersten Hawes, Sydnie Roberts, Joseph Mitchell Clayton, Chi Li, Alexandria Littlejohn, Debra Bartelli, Regan Williams, and Mitch Clayton
- Subjects
Surgery ,RD1-811 ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Objective Pediatric patients can be significantly impacted emotionally by exposure to acute trauma which may negatively impact long-term functioning and lead to an increase in overall distress. This study reports on the incidence of acute stress disorder among pediatric trauma patients in a hospital setting in the southeastern region of the USA.Methods Pediatric patient mental health assessments were conducted using the Childhood Stress Disorders Checklist- Short Form (CSDC-SF) as part of a new integrated behavioral health standard of care within the Trauma Services Division of a level 1 pediatric hospital. Mental health consultations occurred at bedside on inpatient hospital admission into trauma services, or at the outpatient hospital clinic after discharge for injuries treated in the emergency department.Results Associations among type of trauma, child age, and sex were explored in a sample of 617 children (58.9% male) aged 2–18 years (Mage=10.27). The sample was primarily ethnic minorities (56.1% black/African-American, 5% Hispanic/Latinx). Fifteen per cent or more of trauma reports were for burns (26%), motor vehicle accident (22.7%), and recreational sports or leisure activity-related injury (17.5%). Sixty-four per cent of children scored ≥1 on the CSDC-SF, indicating symptoms consistent with acute stress disorder. Higher scores were associated with female sex, age, and injury type.Level of evidence Level IV study provides evidence of the link between traumatic injury and mental health symptoms in a pediatric population. Findings highlight the critical need for mental health screening and provision of integrated mental health counseling services at time of acute pediatric trauma.
- Published
- 2022
- Full Text
- View/download PDF
42. Spatially Resolved Detection of a Spin-Entanglement Wave in a Bose-Hubbard Chain
- Author
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Fukuhara, Takeshi, Hild, Sebastian, Zeiher, Johannes, Schauß, Peter, Bloch, Immanuel, Endres, Manuel, and Gross, Christian
- Subjects
Condensed Matter - Quantum Gases ,Quantum Physics - Abstract
Entanglement is an essential property of quantum many-body systems. However, its local detection is challenging and was so far limited to spin degrees of freedom in ion chains. Here we measure entanglement between the spins of atoms located on two lattice sites in a one-dimensional Bose-Hubbard chain which features both local spin- and particle-number fluctuations. Starting with an initially localized spin impurity, we observe an outwards propagating entanglement wave and show quantitatively how entanglement in the spin sector rapidly decreases with increasing particle-number fluctuations in the chain., Comment: 6 pages, 4 figures
- Published
- 2015
- Full Text
- View/download PDF
43. Microscopy of a scalable superatom
- Author
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Zeiher, Johannes, Schauß, Peter, Hild, Sebastian, Macrì, Tommaso, Bloch, Immanuel, and Gross, Christian
- Subjects
Physics - Atomic Physics ,Condensed Matter - Quantum Gases - Abstract
Strong interactions can amplify quantum effects such that they become important on macroscopic scales. Controlling these coherently on a single particle level is essential for the tailored preparation of strongly correlated quantum systems and opens up new prospects for quantum technologies. Rydberg atoms offer such strong interactions which lead to extreme nonlinearities in laser coupled atomic ensembles. As a result, multiple excitation of a Micrometer sized cloud can be blocked while the light-matter coupling becomes collectively enhanced. The resulting two-level system, often called "superatom", is a valuable resource for quantum information, providing a collective Qubit. Here we report on the preparation of two orders of magnitude scalable superatoms utilizing the large interaction strength provided by Rydberg atoms combined with precise control of an ensemble of ultracold atoms in an optical lattice. The latter is achieved with sub shot noise precision by local manipulation of a two-dimensional Mott insulator. We microscopically confirm the superatom picture by in-situ detection of the Rydberg excitations and observe the characteristic square root scaling of the optical coupling with the number of atoms. Furthermore, we verify the presence of entanglement in the prepared states and demonstrate the coherent manipulation of the superatom. Finally, we investigate the breakdown of the superatom picture when two Rydberg excitations are present in the system, which leads to dephasing and a loss of coherence., Comment: 7 pages, 5 figures
- Published
- 2015
- Full Text
- View/download PDF
44. Simulation in the Call-by-Need Lambda-Calculus with Letrec, Case, Constructors, and Seq
- Author
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Schmidt-Schauß, Manfred, Sabel, David, and Machkasova, Elena
- Subjects
Computer Science - Logic in Computer Science - Abstract
This paper shows equivalence of several versions of applicative similarity and contextual approximation, and hence also of applicative bisimilarity and contextual equivalence, in LR, the deterministic call-by-need lambda calculus with letrec extended by data constructors, case-expressions and Haskell's seq-operator. LR models an untyped version of the core language of Haskell. The use of bisimilarities simplifies equivalence proofs in calculi and opens a way for more convenient correctness proofs for program transformations. The proof is by a fully abstract and surjective transfer into a call-by-name calculus, which is an extension of Abramsky's lazy lambda calculus. In the latter calculus equivalence of our similarities and contextual approximation can be shown by Howe's method. Similarity is transferred back to LR on the basis of an inductively defined similarity. The translation from the call-by-need letrec calculus into the extended call-by-name lambda calculus is the composition of two translations. The first translation replaces the call-by-need strategy by a call-by-name strategy and its correctness is shown by exploiting infinite trees which emerge by unfolding the letrec expressions. The second translation encodes letrec-expressions by using multi-fixpoint combinators and its correctness is shown syntactically by comparing reductions of both calculi. A further result of this paper is an isomorphism between the mentioned calculi, which is also an identity on letrec-free expressions., Comment: 50 pages, 11 figures
- Published
- 2015
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- View/download PDF
45. Z-Disk-Associated Plectin (Isoform 1d): Spatial Arrangement, Interaction Partners, and Role in Filamin C Homeostasis
- Author
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Lilli Winter, Ilona Staszewska-Daca, Stefan Zittrich, Fatiha Elhamine, Michaela M. Zrelski, Katy Schmidt, Irmgard Fischer, Christian Jüngst, Astrid Schauss, Wolfgang H. Goldmann, Robert Stehle, and Gerhard Wiche
- Subjects
plectin ,skeletal muscle ,myofibril ,cytolinker ,desmin intermediate filaments ,chaperone-assisted selective autophagy ,Cytology ,QH573-671 - Abstract
Plectin, a highly versatile cytolinker protein, is crucial for myofiber integrity and function. Accordingly, mutations in the human gene (PLEC) cause several rare diseases, denoted as plectinopathies, with most of them associated with progressive muscle weakness. Of several plectin isoforms expressed in skeletal muscle and the heart, P1d is the only isoform expressed exclusively in these tissues. Using high-resolution stimulated emission depletion (STED) microscopy, here we show that plectin is located within the gaps between individual α-actinin-positive Z-disks, recruiting and bridging them to desmin intermediate filaments (Ifs). Loss of plectin in myofibril bundles led to a complete loss of desmin Ifs. Loss of Z-disk-associated plectin isoform P1d led to disorganization of muscle fibers and slower relaxation of myofibrils upon mechanical strain, in line with an observed inhomogeneity of muscle ultrastructure. In addition to binding to α-actinin and thereby providing structural support, P1d forms a scaffolding platform for the chaperone-assisted selective autophagy machinery (CASA) by directly interacting with HSC70 and synpo2. In isoform-specific knockout (P1d-KO) mouse muscle and mechanically stretched plectin-deficient myoblasts, we found high levels of undigested filamin C, a bona fide substrate of CASA. Similarly, subjecting P1d-KO mice to forced swim tests led to accumulation of filamin C aggregates in myofibers, highlighting a specific role of P1d in tension-induced proteolysis activated upon high loads of physical exercise and muscle contraction.
- Published
- 2023
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46. Acinetobacter stercoris sp. nov. isolated from output source of a mesophilic german biogas plant with anaerobic operating conditions
- Author
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Pulami, Dipen, Schauss, Thorsten, Eisenberg, Tobias, Blom, Jochen, Schwengers, Oliver, Bender, Jennifer K., Wilharm, Gottfried, Kämpfer, Peter, and Glaeser, Stefanie P.
- Published
- 2021
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47. Capsazepine (CPZ) Inhibits TRPC6 Conductance and Is Protective in Adriamycin-Induced Nephropathy and Diabetic Glomerulopathy
- Author
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Henning Hagmann, Naghmeh Hassanzadeh Khayyat, Mahsa Matin, Cem Oezel, He Chen, Astrid Schauss, Christoph Schell, Thomas Benzing, Stuart Dryer, and Paul T. Brinkkoetter
- Subjects
glomerular disease ,podocyte ,proteinuria ,oxidative stress ,lipid peroxidation ,Cytology ,QH573-671 - Abstract
Reactive oxygen species (ROS), which excessively arise in diabetes and systemic inflammatory diseases, modify cellular lipids and cellular lipid composition leading to altered biophysical properties of cellular membranes. The impact of lipid peroxidation on transmembrane signaling routes is not yet well studied. The canonical transient receptor potential channel 6 (TRPC6) is implicated in the pathogenesis of several forms of glomerular diseases. TRPC6 is sensitive to membrane stretch and relies on a distinct lipid environment. This study investigates the effect of oxidative alterations to plasma membrane lipids on TRPC6 activity and the function of the glomerular filter. Knockout of the anti-oxidative, lipid modifying enzyme paraoxonase 2 (PON2) leads to altered biophysical properties of glomerular epithelial cells, which are called podocytes. Cortical stiffness, quantified by atomic force microscopy, was largely increased in PON2-deficient cultured podocytes. PON2 deficiency markedly enhanced TRPC6 channel currents and channel recovery. Treatment with the amphiphilic substance capsazepine in micromolar doses reduced cortical stiffness and abrogated TRPC6 conductance. In in vivo studies, capsazepine reduced the glomerular phenotype in the model of adriamycin-induced nephropathy in PON2 knockout mice and wildtype littermates. In diabetic AKITA mice, the progression of albuminuria and diabetic kidney disease was delayed. In summary, we provide evidence that the modification of membrane characteristics affects TRPC6 signaling. These results could spur future research to investigate modification of the direct lipid environment of TRPC6 as a future therapeutic strategy in glomerular disease.
- Published
- 2023
- Full Text
- View/download PDF
48. CD30-Positive Extracellular Vesicles Enable the Targeting of CD30-Negative DLBCL Cells by the CD30 Antibody-Drug Conjugate Brentuximab Vedotin
- Author
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Liudmila Lobastova, Marcus Lettau, Felix Babatz, Thais Dolzany de Oliveira, Phuong-Hien Nguyen, Bianca Alves Pauletti, Astrid C. Schauss, Horst Dürkop, Ottmar Janssen, Adriana F. Paes Leme, Michael Hallek, and Hinrich P. Hansen
- Subjects
tumor microenvironment ,cellular crosstalk ,immune therapy ,antibody-drug conjugate ,extracellular vesicle ,Biology (General) ,QH301-705.5 - Abstract
CD30, a member of the TNF receptor superfamily, is selectively expressed on a subset of activated lymphocytes and on malignant cells of certain lymphomas, such as classical Hodgkin Lymphoma (cHL), where it activates critical bystander cells in the tumor microenvironment. Therefore, it is not surprising that the CD30 antibody-drug conjugate Brentuximab Vedotin (BV) represents a powerful, FDA-approved treatment option for CD30+ hematological malignancies. However, BV also exerts a strong anti-cancer efficacy in many cases of diffuse large B cell lymphoma (DLBCL) with poor CD30 expression, even when lacking detectable CD30+ tumor cells. The mechanism remains enigmatic. Because CD30 is released on extracellular vesicles (EVs) from both, malignant and activated lymphocytes, we studied whether EV-associated CD30 might end up in CD30– tumor cells to provide binding sites for BV. Notably, CD30+ EVs bind to various DLBCL cell lines as well as to the FITC-labeled variant of the antibody-drug conjugate BV, thus potentially conferring the BV binding also to CD30– cells. Confocal microscopy and imaging cytometry studies revealed that BV binding and uptake depend on CD30+ EVs. Since BV is only toxic toward CD30– DLBCL cells when CD30+ EVs support its uptake, we conclude that EVs not only communicate within the tumor microenvironment but also influence cancer treatment. Ultimately, the CD30-based BV not only targets CD30+ tumor cell but also CD30– DLBCL cells in the presence of CD30+ EVs. Our study thus provides a feasible explanation for the clinical impact of BV in CD30– DLBCL and warrants confirming studies in animal models.
- Published
- 2021
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49. Optimizing Space of Parallel Processes
- Author
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Manfred Schmidt-Schauß and Nils Dallmeyer
- Subjects
Mathematics ,QA1-939 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
This paper is a contribution to exploring and analyzing space-improvements in concurrent programming languages, in particular in the functional process-calculus CHF. Space-improvements are defined as a generalization of the corresponding notion in deterministic pure functional languages. The main part of the paper is the O(n*log n) algorithm SpOptN for offline space optimization of several parallel independent processes. Applications of this algorithm are: (i) affirmation of space improving transformations for particular classes of program transformations; (ii) support of an interpreter-based method for refuting space-improvements; and (iii) as a stand-alone offline-optimizer for space (or similar resources) of parallel processes.
- Published
- 2019
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- View/download PDF
50. Intestinal insulin/IGF1 signalling through FoxO1 regulates epithelial integrity and susceptibility to colon cancer
- Author
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Ostermann, A. L., Wunderlich, C. M., Schneiders, L., Vogt, M. C., Woeste, M. A., Belgardt, B. F., Niessen, C. M., Martiny, B., Schauss, A. C., Frommolt, P., Nikolaev, A., Hövelmeyer, N., Sears, R. C., Koch, P. J., Günzel, D., Brüning, J. C., and Wunderlich, F. T.
- Published
- 2019
- Full Text
- View/download PDF
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