104 results on '"Reis K"'
Search Results
2. Initial Experience of Using Diaphragmatic Ultrasound in Individuals With Spinal Cord Injury Who Practice Adapted Sports
- Author
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Acar Silva, J., primary, Reis, K., additional, Souza, L., additional, Sales, R., additional, Barranco, L., additional, Costa, C.H., additional, Lopes, A., additional, and Mafort, T.T., additional
- Published
- 2024
- Full Text
- View/download PDF
3. ENRIQUECIMENTO AMBIENTAL COM DUAS ONÇAS-PINTADAS
- Author
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Adão, F. M., primary, Lima, A. K. F., primary, Joveli, G., primary, Lima, N. L. S., primary, Morais, A. N., primary, and Reis, K. L. S., primary
- Published
- 2022
- Full Text
- View/download PDF
4. TREINAMENTO DE LEIGOS EM PARADA CARDÍACA E RESSUSCITAÇÃO CARDIOPULMONAR: REVISÃO INTEGRATIVA DA LITERATURA
- Author
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Lima, M. F., primary, Sócio, G. B., additional, Perin, M. C., additional, Braga, A. C. L., additional, Lordani, T. H. G., additional, Vilhalva, F. V. M, additional, Silva, O. M., additional, Reis, K. K. S., additional, and Lopes, A. P. T., additional
- Published
- 2022
- Full Text
- View/download PDF
5. Synthesis, characterization, photocatalytic, and antimicrobial activity of ZrO2 nanoparticles and Ag@ZrO2 nanocomposite prepared by the advanced oxidative process/hydrothermal route
- Author
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Nova, C. V., Reis, K. A., Pinheiro, A. L., Dalmaschio, C. J., Chiquito, A. J., Teodoro, M. D., Rodrigues, A. D., Longo, E., and Pontes, F. M.
- Published
- 2021
- Full Text
- View/download PDF
6. PB0970 E-learning Course as a Tool to Improve Awareness on the Management of Cancer Associated Thrombosis at a Single Institution
- Author
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Rothschild, C., primary, Brandäo, A., additional, Reis, K., additional, Nóbrega, T., additional, Diz, M., additional, Pereira, J., additional, and Rocha, V., additional
- Published
- 2023
- Full Text
- View/download PDF
7. BULLYING NA ESCOLA: a percepção dos seus atores
- Author
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FERREIRA, T. A. D., primary, REIS, K. P., additional, and VIANNA, J. A., additional
- Published
- 2020
- Full Text
- View/download PDF
8. Biological treatment of vinasse with yeast and simultaneous production of single-cell protein for feed supplementation
- Author
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dos Reis, K. C., Coimbra, J. M., Duarte, W. F., Schwan, R. F., and Silva, C. F.
- Published
- 2019
- Full Text
- View/download PDF
9. SILAM and MACC reanalysis aerosol data used for simulating the aerosol direct radiative effect with the NWP model HARMONIE for summer 2010 wildfire case in Russia
- Author
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Toll, V., Reis, K., Ots, R., Kaasik, M., Männik, A., Prank, M., and Sofiev, M.
- Published
- 2015
- Full Text
- View/download PDF
10. Exploring the alignment of first-year summative assessments with Bloom's Taxonomy: a longitudinal study
- Author
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dos Reis, K., Swanepoel, C., Yu, D., and Anciano, F.
- Subjects
Revised Bloom's Taxonomy ,assessment ,undergraduate first-year studies - Abstract
The correlation between the level of difficulty of assessments, Bloom's Taxonomy as well as pass rates of courses has been a seriously under-researched area in South Africa. In this study, we proposed the revised Bloom's taxonomy level of difficulty index, before we examined 112 first-year 2017-2019 final and supplementary assessment papers from the Economic and Management Sciences Faculty of a university in Western Cape. The descriptive statistics showed that these assessment papers are different in terms of duration, total marks, type of questions asked as well as pass rates. It was also found that these first-year summative assessments asked questions mainly at levels two (understand) and three (apply) of the revised Bloom's Taxonomy. In addition, the correlation and econometric analysis did not find a strong correlation between the level of difficulty index and pass rates. Nonetheless, the above-mentioned results need to be interpreted with great caution, because strictly speaking, one should also control for differences in other characteristics (e.g., students' personal characteristics, school characteristics and lecture attendance). To conclude, there is no explicit national policy that guides higher education institutions (HEIs) on how to use Bloom's or any other taxonomy to assess students at the appropriate National Qualifications Framework (NQF) level. Hence, our findings suggest that there is a need for a national assessment policy framework to guide HEIs on how to assess undergraduate students at different cognitive levels as required by the NQF.
- Published
- 2022
11. Phenotype Harmonization in the GLIDE2 Oral Health Genomics Consortium
- Author
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Divaris, K., primary, Haworth, S., additional, Shaffer, J.R., additional, Anttonen, V., additional, Beck, J.D., additional, Furuichi, Y., additional, Holtfreter, B., additional, Jönsson, D., additional, Kocher, T., additional, Levy, S.M., additional, Magnusson, P.K.E., additional, McNeil, D.W., additional, Michaëlsson, K., additional, North, K.E., additional, Palotie, U., additional, Papapanou, P.N., additional, Pussinen, P.J., additional, Porteous, D., additional, Reis, K., additional, Salminen, A., additional, Schaefer, A.S., additional, Sudo, T., additional, Sun, Y.Q., additional, Suominen, A.L., additional, Tamahara, T., additional, Weinberg, S.M., additional, Lundberg, P., additional, Marazita, M.L., additional, and Johansson, I., additional
- Published
- 2022
- Full Text
- View/download PDF
12. Phenotype Harmonization in the GLIDE2 Oral Health Genomics Consortium.
- Author
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Divaris, K, Haworth, S, Shaffer, J R, Anttonen, V, Beck, J D, Furuichi, Y, Holtfreter, B, Jönsson, Daniel, Kocher, T, Levy, S M, Magnusson, P K E, McNeil, D W, Michaëlsson, K, North, K E, Palotie, U, Papapanou, P N, Pussinen, P J, Porteous, D, Reis, K, Salminen, A, Schaefer, A S, Sudo, T, Sun, Y Q, Suominen, A L, Tamahara, T, Weinberg, S M, Lundberg, P, Marazita, M L, Johansson, I, Divaris, K, Haworth, S, Shaffer, J R, Anttonen, V, Beck, J D, Furuichi, Y, Holtfreter, B, Jönsson, Daniel, Kocher, T, Levy, S M, Magnusson, P K E, McNeil, D W, Michaëlsson, K, North, K E, Palotie, U, Papapanou, P N, Pussinen, P J, Porteous, D, Reis, K, Salminen, A, Schaefer, A S, Sudo, T, Sun, Y Q, Suominen, A L, Tamahara, T, Weinberg, S M, Lundberg, P, Marazita, M L, and Johansson, I
- Abstract
Genetic risk factors play important roles in the etiology of oral, dental, and craniofacial diseases. Identifying the relevant risk loci and understanding their molecular biology could highlight new prevention and management avenues. Our current understanding of oral health genomics suggests that dental caries and periodontitis are polygenic diseases, and very large sample sizes and informative phenotypic measures are required to discover signals and adequately map associations across the human genome. In this article, we introduce the second wave of the Gene-Lifestyle Interactions and Dental Endpoints consortium (GLIDE2) and discuss relevant data analytics challenges, opportunities, and applications. In this phase, the consortium comprises a diverse, multiethnic sample of over 700,000 participants from 21 studies contributing clinical data on dental caries experience and periodontitis. We outline the methodological challenges of combining data from heterogeneous populations, as well as the data reduction problem in resolving detailed clinical examination records into tractable phenotypes, and describe a strategy that addresses this. Specifically, we propose a 3-tiered phenotyping approach aimed at leveraging both the large sample size in the consortium and the detailed clinical information available in some studies, wherein binary, severity-encompassing, and "precision," data-driven clinical traits are employed. As an illustration of the use of data-driven traits across multiple cohorts, we present an application of dental caries experience data harmonization in 8 participating studies (N = 55,143) using previously developed permanent dentition tooth surface-level dental caries pattern traits. We demonstrate that these clinical patterns are transferable across multiple cohorts, have similar relative contributions within each study, and thus are prime targets for genetic interrogation in the expanded and diverse multiethnic sample of GLIDE2. We anticipate that resul
- Published
- 2022
- Full Text
- View/download PDF
13. Phenotype harmonization in the GLIDE2 oral health genomics consortium
- Author
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Divaris, K. (K.), Haworth, S. (S.), Shaffer, J. (J.R.), Anttonen, V. (V.), Beck, J. (J.D.), Furuichi, Y. (Y.), Holtfreter, B. (B.), Jönsson, D. (D.), Kocher, T. (T.), Levy, S. (S.M.), Magnusson, P. (P.K.E.), McNeil, D. (D.W.), Michaëlsson, K. (K.), North, K. (K.E.), Palotie, U. (U.), Papapanou, P. (P.N.), Pussinen, P. (P.J.), Porteous, D. (D.), Reis, K. (K.), Salminen, A. (A.), Schaefer, A. (A.S.), Sudo, T. (T.), Sun, Y. (Y.Q.), Suominen, A. (A.L.), Tamahara, T. (T.), Weinberg, S. (S.M.), Lundberg, P. (P.), Marazita, M. (M.L.), Johansson, I. (I.), Divaris, K. (K.), Haworth, S. (S.), Shaffer, J. (J.R.), Anttonen, V. (V.), Beck, J. (J.D.), Furuichi, Y. (Y.), Holtfreter, B. (B.), Jönsson, D. (D.), Kocher, T. (T.), Levy, S. (S.M.), Magnusson, P. (P.K.E.), McNeil, D. (D.W.), Michaëlsson, K. (K.), North, K. (K.E.), Palotie, U. (U.), Papapanou, P. (P.N.), Pussinen, P. (P.J.), Porteous, D. (D.), Reis, K. (K.), Salminen, A. (A.), Schaefer, A. (A.S.), Sudo, T. (T.), Sun, Y. (Y.Q.), Suominen, A. (A.L.), Tamahara, T. (T.), Weinberg, S. (S.M.), Lundberg, P. (P.), Marazita, M. (M.L.), and Johansson, I. (I.)
- Abstract
Genetic risk factors play important roles in the etiology of oral, dental, and craniofacial diseases. Identifying the relevant risk loci and understanding their molecular biology could highlight new prevention and management avenues. Our current understanding of oral health genomics suggests that dental caries and periodontitis are polygenic diseases, and very large sample sizes and informative phenotypic measures are required to discover signals and adequately map associations across the human genome. In this article, we introduce the second wave of the Gene-Lifestyle Interactions and Dental Endpoints consortium (GLIDE2) and discuss relevant data analytics challenges, opportunities, and applications. In this phase, the consortium comprises a diverse, multiethnic sample of over 700,000 participants from 21 studies contributing clinical data on dental caries experience and periodontitis. We outline the methodological challenges of combining data from heterogeneous populations, as well as the data reduction problem in resolving detailed clinical examination records into tractable phenotypes, and describe a strategy that addresses this. Specifically, we propose a 3-tiered phenotyping approach aimed at leveraging both the large sample size in the consortium and the detailed clinical information available in some studies, wherein binary, severity-encompassing, and “precision,” data-driven clinical traits are employed. As an illustration of the use of data-driven traits across multiple cohorts, we present an application of dental caries experience data harmonization in 8 participating studies (N = 55,143) using previously developed permanent dentition tooth surface–level dental caries pattern traits. We demonstrate that these clinical patterns are transferable across multiple cohorts, have similar relative contributions within each study, and thus are prime targets for genetic interrogation in the expanded and diverse multiethnic sample of GLIDE2. We anticipate t
- Published
- 2022
14. sj-docx-1-jdr-10.1177_00220345221109775 – Supplemental material for Phenotype Harmonization in the GLIDE2 Oral Health Genomics Consortium
- Author
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Divaris, K., Haworth, S., Shaffer, J.R., Anttonen, V., Beck, J.D., Furuichi, Y., Holtfreter, B., Jönsson, D., Kocher, T., Levy, S.M., Magnusson, P.K.E., McNeil, D.W., Michaëlsson, K., North, K.E., Palotie, U., Papapanou, P.N., Pussinen, P.J., Porteous, D., Reis, K., Salminen, A., Schaefer, A.S., Sudo, T., Sun, Y.Q., Suominen, A.L., Tamahara, T., Weinberg, S.M., Lundberg, P., Marazita, M.L., and Johansson, I.
- Subjects
110599 Dentistry not elsewhere classified ,FOS: Materials engineering ,FOS: Clinical medicine ,91299 Materials Engineering not elsewhere classified - Abstract
Supplemental material, sj-docx-1-jdr-10.1177_00220345221109775 for Phenotype Harmonization in the GLIDE2 Oral Health Genomics Consortium by K. Divaris, S. Haworth, J.R. Shaffer, V. Anttonen, J.D. Beck, Y. Furuichi, B. Holtfreter, D. Jönsson, T. Kocher, S.M. Levy, P.K.E. Magnusson, D.W. McNeil, K. Michaëlsson, K.E. North, U. Palotie, P.N. Papapanou, P.J. Pussinen, D. Porteous, K. Reis, A. Salminen, A.S. Schaefer, T. Sudo, Y.Q. Sun, A.L. Suominen, T. Tamahara, S.M. Weinberg, P. Lundberg, M.L. Marazita and I. Johansson in Journal of Dental Research
- Published
- 2022
- Full Text
- View/download PDF
15. Exploring the alignment of first-year summative assessments with Bloom’s Taxonomy: A longitudinal study
- Author
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dos Reis, K., primary, Swanepoel, C., additional, and Yu, D., additional
- Published
- 2022
- Full Text
- View/download PDF
16. Exploring the influence of students’ Matric Accounting knowledge on the successful completion of a BCom Accounting mainstream degree: A comparative study at a university in the Western Cape
- Author
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Williams, B., primary, dos Reis, K., additional, and Yu, D., additional
- Published
- 2022
- Full Text
- View/download PDF
17. Integrating Computational Methods to Investigate the Macroecology of Microbiomes
- Author
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Mascarenhas, R., Ruziska, F.M., Moreira, E.F., Campos, A.B., Loiola, M., Reis, K., Trindade-Silva, A.E., Barbosa, F.A.S., Salles, L., Menezes, R., Veiga, R., Coutinho, F.H., Dutilh, B.E., Guimaraes, P.R., Jr., Assis, A.P.A., Ara, A., Miranda, J.G.V., Andrade, R.F.S., Vilela, B., Meirelles, P.M., Mascarenhas, R., Ruziska, F.M., Moreira, E.F., Campos, A.B., Loiola, M., Reis, K., Trindade-Silva, A.E., Barbosa, F.A.S., Salles, L., Menezes, R., Veiga, R., Coutinho, F.H., Dutilh, B.E., Guimaraes, P.R., Jr., Assis, A.P.A., Ara, A., Miranda, J.G.V., Andrade, R.F.S., Vilela, B., and Meirelles, P.M.
- Abstract
Contains fulltext : 218139.pdf (publisher's version ) (Open Access), Studies in microbiology have long been mostly restricted to small spatial scales. However, recent technological advances, such as new sequencing methodologies, have ushered an era of large-scale sequencing of environmental DNA data from multiple biomes worldwide. These global datasets can now be used to explore long standing questions of microbial ecology. New methodological approaches and concepts are being developed to study such large-scale patterns in microbial communities, resulting in new perspectives that represent a significant advances for both microbiology and macroecology. Here, we identify and review important conceptual, computational, and methodological challenges and opportunities in microbial macroecology. Specifically, we discuss the challenges of handling and analyzing large amounts of microbiome data to understand taxa distribution and co-occurrence patterns. We also discuss approaches for modeling microbial communities based on environmental data, including information on biological interactions to make full use of available Big Data. Finally, we summarize the methods presented in a general approach aimed to aid microbiologists in addressing fundamental questions in microbial macroecology, including classical propositions (such as "everything is everywhere, but the environment selects") as well as applied ecological problems, such as those posed by human induced global environmental changes.
- Published
- 2019
18. Extruded sorghum (Sorghum bicolor L.) reduces metabolic risk of hepatic steatosis in obese rats consuming a high fat diet
- Author
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SOUSA, A. R. de, MOREIRA, M. E. de C., TOLEDO, R. C. L., BENJAMIN, L. dos A., QUEIROZ, V. A. V., VELOSO, M. P., REIS, K. de S., MARTINO, H. S. D., Andressa Rodrigues de Sousa, Universidade Federal de Viçosa, Maria Eliza de Castro Moreiraa, Universidade Federal de Viçosa, Renata Celi Lopes Toledo, Universidade Federal de Viçosa, Laércio dos Anjos Benjamin, Universidade Federal de Viçosa, VALERIA APARECIDA VIEIRA QUEIROZ, CNPMS, Marcia Paranho Veloso, Universidade Federal de Alfenas, Kassius de Souza Reis, Universidade Federal de Alfenas, and Hércia Stampini Duarte Martino, Universidade Federal de Viçosa.
- Subjects
Esteatose ,Antocianina ,Composto bioativo ,Adipogenética - Abstract
The study investigated the effect of extruded sorghum flour (ESF) in a high fat diet (HFD) on biometric measurements and hepatic lipogenesis. Male Wistar rats were fed a normal diet (AIN-93M), HFD, HFD plus ESF replacing 50% cellulose and 100% corn starch (HFDS50), or HFD plus ESF replacing 100% cellulose and 100% corn starch (HFDS100) for eight weeks. ESF reduced the body mass index and liver weight of obese rats. Additionally, ESF reduced hepatic lipogenesis by increasing adiponectin 2 receptor gene expression and gene and protein expressions of peroxisome proliferator-activated receptor (PPAR), while reducing the gene expression of sterol regulatory element-binding transcription factor 1. Molecular docking analysis revealed the a?nity of ESF compounds (luteolinidin, apigeninidin, 5-methoxy-luteolinidin, and 7-methoxy-apigeninidin) with the PPAR-?receptor. Histological analysis con?rmed the decreased grade of hepatic steatosis in obese rats. These data indicate the potential of ESF to reduce metabolic risk of hepatic steatosis associated with lipogenesis and obesity. Made available in DSpace on 2019-02-22T00:34:23Z (GMT). No. of bitstreams: 1 Extrudedsorghum.pdf: 2221016 bytes, checksum: 6b20773e37800be98e325a9962729a04 (MD5) Previous issue date: 2019-02-21
- Published
- 2018
19. VPA/PLGA microfibers produced by coaxial electrospinning for the treatment of central nervous system injury.
- Author
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Reis, K. P., Sperling, L. E., Teixeira, C., Sommer, L., Colombo, M., Koester, L. S., and Pranke, P.
- Published
- 2020
- Full Text
- View/download PDF
20. Chitosan/Cellulose Nanofibril Nanocomposite and Its Effect on Quality of Coated Strawberries
- Author
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Resende, N. S., primary, Gonçalves, G. A. S., additional, Reis, K. C., additional, Tonoli, G. H. D., additional, and Boas, E. V. B. V., additional
- Published
- 2018
- Full Text
- View/download PDF
21. Biological treatment of vinasse with yeast and simultaneous production of single-cell protein for feed supplementation
- Author
-
dos Reis, K. C., primary, Coimbra, J. M., additional, Duarte, W. F., additional, Schwan, R. F., additional, and Silva, C. F., additional
- Published
- 2018
- Full Text
- View/download PDF
22. Comparison of direct drive and high speed drive concepts for the use in wheel-hub-drives
- Author
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Reis, K., primary and Binder, A., additional
- Published
- 2016
- Full Text
- View/download PDF
23. RhoD is a Golgi component with a role in anterograde protein transport from the ER to the plasma membrane
- Author
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Blom, M., Reis, K., Nehru, V., Blom, Hans, Gad, A. K. B., Aspenström, P., Blom, M., Reis, K., Nehru, V., Blom, Hans, Gad, A. K. B., and Aspenström, P.
- Abstract
RhoD is a member of the Rho GTPase family and it coordinates actin dynamics and membrane trafficking. Activation of RhoD results in formation of filopodia, dissolution of stress fibers, and the subsequent formation of short actin bundles. In addition, RhoD localizes to early endosomes and recycling endosomes, and has a regulatory role in endosome trafficking. In this study, we report on a function of RhoD in the regulation of Golgi homeostasis. We show that manipulation of protein and activation levels of RhoD, as well as of its binding partner WHAMM, result in derailed localization of Golgi stacks. Moreover, vesicle trafficking from the endoplasmic reticulum to the plasma membrane via the Golgi apparatus measured by the VSV-G protein is severely hampered by manipulation of RhoD or WHAMM. In summary, our studies demonstrate a novel role for this member of the Rho GTPases in the regulation of Golgi function., QC 20150609
- Published
- 2015
- Full Text
- View/download PDF
24. PEER MENTORING: ENHANCING ECONOMICS FIRST YEARS' ACADEMIC PERFORMANCE.
- Author
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Dos Reis, K. M. and Yu, D.
- Subjects
ACADEMIC achievement ,MENTORING in education ,HIGHER education ,STUDENT participation ,SCHOOL dropouts - Abstract
South African higher education institutions have been grappling with the high dropout rate, specifically at first year level. Despite universities' attempts to implement various strategies to increase student retention, there is very little or no empirical warrant to validate these attempts of research in the South African context. Hence, the aim of this study is to explore how disciplinespecific peer mentoring impacts first year students' academic performance. The two most significant findings of this study are that firstly, the mean continuous assessment mark of the mentees (73.6) is significantly higher compared to students who were not mentees and, secondly, the mentees' final examination performance was also higher (60.9 versus 52.9). This study highlights the possibilities of using peer mentoring to improve first years' academic performance. The evidence as revealed in the study provides insights into these possibilities. For example, the peer mentees indicated that they the peer mentors weekly motivational messages inspired them to continue with their studies and the continuous support from the peer mentors assisted them to understand the difficult concepts of Economics. While this study did not focus on the peer mentors, we also found that they were willing to participate voluntarily in this programme, as they believed that there are multiple benefits to being a peer mentor. We argue that the implementation of discipline-specific peer mentoring programmes across all disciplines could facilitate student retention and increase the overall pass rate of first year students. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
25. Ultrathin CAD-CAM Ceramic Occlusal Veneers and Anterior Bilaminar Veneers for the Treatment of Moderate Dental Biocorrosion: A 1.5-Year Follow-Up.
- Author
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Resende, T. H., Reis, K. R., Schlichting, L. H., and Magne, P.
- Subjects
DENTAL pathology ,DENTAL ceramics ,THIN films ,THERAPEUTICS - Abstract
Dental biocorrosion can produce a devastating impact on oral health. The restorative phase of the treatment should not cause additional damage of the remaining sound tooth structure. Ultrathin occlusal veneers are a conservative alternative to traditional onlays and complete crowns for the treatment of severe biocorrosive lesions. This strategy is explained in the present case report through a full-mouth rehabilitation of a patient with moderate biocorrosion. Maxillary anterior teeth were restored using the bilaminar technique (lingual direct composite veneers with labial ceramic veneers) and posterior teeth using ultrathin CAD-CAM ceramic occlusal veneers. The technical aspects required for the implementation of this new restorative design are presented with a special emphasis on the control of tooth preparation based on diagnostic wax-up, provisionalization, and the use of CAD-CAM technology. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
26. Chitosan/Cellulose Nanofibril Nanocomposite and Its Effect on Quality of Coated Strawberries.
- Author
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Resende, N. S., Gonçalves, G. A. S., Reis, K. C., Tonoli, G. H. D., and Boas, E. V. B. V.
- Subjects
NANOCOMPOSITE materials ,SCANNING electron microscopy ,THIN films ,WATER vapor ,ANTIOXIDANTS - Abstract
The aim of this study was to develop a chitosan/cellulose nanofibril (CNF) nanocomposite and evaluate its effect on strawberry’s postharvest quality after coating. From the results of color, thickness, and scanning electron microscopy (SEM) and permeability to water vapor analyses, the best film formulation for coating strawberries was determined. Three coating formulations were prepared: 1% chitosan, 1% chitosan + 3% CNF, and 1% chitosan + 5% CNF. The strawberries were immersed in the filmogenic solutions and kept under cold storage (1 ± 1°C). The color of the film was not affected by increased concentration of cellulose nanofibrils; however, the thickness and water vapor permeability were affected by the CNF addition. The coating with the highest CNF concentration performed better in reducing fruit mass and firmness loss. The color was positively influenced by the addition of the coating, regardless of formulation, as well as soluble solid content, PG enzymatic activity, and the fruit appearance. The pH and titratable acidity showed no significant difference among treatments. It was observed that the vitamin C, phenolic compounds, and anthocyanin content, as well as the PAL activity and the antioxidant activity (except for % protection), were affected by chitosan coating, however not by the addition of CNFs. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
27. Downstairs gene flow: the effects of a linear sequence of waterfalls on the only population of the endangered minnow Astyanax xavante
- Author
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Reis, K. V., primary, Venere, P. C., additional, Sampaio, I., additional, Rêgo, P. S., additional, Vallinoto, M., additional, and Souza, I. L., additional
- Published
- 2015
- Full Text
- View/download PDF
28. Genetic Study of Psoriasis Highlights its Close Link with Socioeconomic Status and Affective Symptoms.
- Author
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Heikkilä A, Sliz E, Huilaja L, Reis K, Palta P, Elnahas AG, Reigo A, Esko T, Laisk T, Teder-Laving M, Tasanen K, and Kettunen J
- Subjects
- Humans, Male, Female, Risk Factors, Middle Aged, Adult, Polymorphism, Single Nucleotide, Estonia epidemiology, United Kingdom epidemiology, Psoriasis genetics, Psoriasis epidemiology, Psoriasis psychology, Genome-Wide Association Study, Genetic Predisposition to Disease, Social Class
- Abstract
Psoriasis is an inflammatory skin disease with an estimated heritability of around 70%. Previous GWASs have detected several risk loci for psoriasis. To further improve the understanding of the genetic risk factors impacting the disease, we conducted a discovery GWAS in FinnGen and a subsequent replication and meta-analysis with data from the Estonian Biobank and the UK Biobank; the study sample included 925,649 individuals (22,659 cases and 902,990 controls), the largest sample for psoriasis yet. In addition, we conducted downstream analyses to find out more about psoriasis' cross-trait genetic correlations and causal relationships. We report 6 risk loci, which, to our knowledge, are previously unreported, most of which harbor genes related to NF-κB signaling pathway and overall immunity. Genetic correlations highlight the relationship between psoriasis and smoking, higher body weight, and lower education level. In addition, we report causal relationships between psoriasis and mood symptoms as well as 2-directioned causal relationship between psoriasis and lower education level. Our results provide further knowledge on psoriasis risk factors, which may be useful in the development of future treatment strategies., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
29. Genome-wide meta-analysis of myasthenia gravis uncovers new loci and provides insights into polygenic prediction.
- Author
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Braun A, Shekhar S, Levey DF, Straub P, Kraft J, Panagiotaropoulou GM, Heilbron K, Awasthi S, Meleka Hanna R, Hoffmann S, Stein M, Lehnerer S, Mergenthaler P, Elnahas AG, Topaloudi A, Koromina M, Palviainen T, Asbjornsdottir B, Stefansson H, Skuladóttir AT, Jónsdóttir I, Stefansson K, Reis K, Esko T, Palotie A, Leypoldt F, Stein MB, Fontanillas P, Kaprio J, Gelernter J, Davis LK, Paschou P, Tannemaat MR, Verschuuren JJGM, Kuhlenbäumer G, Gregersen PK, Huijbers MG, Stascheit F, Meisel A, and Ripke S
- Subjects
- Humans, Polymorphism, Single Nucleotide, Age of Onset, Male, Female, Middle Aged, Case-Control Studies, Genetic Loci, Alleles, White People genetics, Adult, Myasthenia Gravis genetics, Genome-Wide Association Study, Multifactorial Inheritance, Genetic Predisposition to Disease
- Abstract
Myasthenia gravis (MG) is a rare autoantibody-mediated disease affecting the neuromuscular junction. We performed a genome-wide association study of 5708 MG cases and 432,028 controls of European ancestry and a replication study in 3989 cases and 226,643 controls provided by 23andMe Inc. We identified 12 independent genome-wide significant hits (P < 5e
-8 ) across 11 loci. Subgroup analyses revealed two of these were associated with early-onset (at age <50) and four with late-onset MG (at age ≥ 50). Imputation of human leukocyte antigen alleles revealed inverse effect sizes for late- and early-onset, suggesting a potential modulatory influence on the time of disease manifestation. We assessed the performance of polygenic risk scores for MG, which significantly predicted disease status in an independent target cohort, explaining 4.21% of the phenotypic variation (P = 5.12e-9 ). With this work, we aim to enhance our understanding of the genetic architecture of MG., Competing Interests: Competing interests The authors declare the following competing interests: A.M. has received speaker or consultancy honoraria or financial research support (paid to his institution) from Alexion Pharmaceuticals, argenx, Axunio, Destin, Grifols, Hormosan Pharma, Janssen, Merck, Octapharma, UCB, and Xcenda. He serves as medical advisory board chairman of the German Myasthenia Gravis Society. A.Th.S., B.Á, H.S., I.J., and K.S. are employees of deCODE/Amgen Inc. F.S. has received speaker’s honoraria from argx and Alexion, as well as honoraria for attending advisory boards for Alexion and UCB Pharma. F.L. is supported by the German Ministry of Education and Research (01GM1908A und 01GM2208), E-Rare Joint Transnational research support (ERA-Net, LE3064/2-1), Stiftung Pathobiochemie of the German Society for Laboratory Medicine and HORIZON MSCA 2022 Doctoral Network 101119457 — IgG4-TREAT and discloses speaker honoraria from Grifols, Teva, Biogen, Bayer, Roche, Novartis, Fresenius, travel funding from Merck, Grifols and Bayer and serving on advisory boards for Roche, Biogen and Alexion. K.H. was formerly employed by and holds stock or stock options in 23andMe, Inc. Murray.S. has in the past 3 years received consulting income from Acadia Pharmaceuticals, Aptinyx, atai Life Sciences, BigHealth, Biogen, Bionomics, BioXcel Therapeutics, Boehringer Ingelheim, Clexio, Delix Therapeutics, Eisai, EmpowerPharm, Engrail Therapeutics, Janssen, Jazz Pharmaceuticals, NeuroTrauma Sciences, PureTech Health, Sage Therapeutics, Sumitomo Pharma, and Roche/Genentech. Dr. Stein has stock options in Oxeia Biopharmaceuticals and EpiVario. He has been paid for his editorial work on Depression and Anxiety (Editor-in-Chief), Biological Psychiatry (Deputy Editor), and UpToDate (Co-Editor-in-Chief for Psychiatry). He has also received research support from NIH, Department of Veterans Affairs, and the Department of Defense. He is on the scientific advisory board for the Brain and Behavior Research Foundation and the Anxiety and Depression Association of America. M.G.H. and J.J.G.M.V. are co-inventors on MuSK-related patents. LUMC, M.G.H., and J.J.G.M.V. receive royalties from these patents. LUMC receives royalties from a MuSK ELISA. M.G.H. is a consultant for argenx. Maike.S. has received speaker’s honoraria and honoraria for attendance at advisory boards from argenx and Alexion. P.F. is employed by and holds stock or stock options in 23andMe, Inc. P.M. has been on the board of HealthNextGen. S.L. has received speaker’s honoraria from Alexion, argenx, Hormosan and UCB and honoraria for attendance at advisory boards from Alexion, argenx, Biogen, HUMA, UCB and Roche. S.H. has received speaker’s honoraria from Alexion, argenx, UCB and Roche and honoraria for attendance at advisory boards from Alexion, argenx and Roche. S.H. is a member of the medical advisory board of the German Myasthenia Society, DMG. M.R.T. reports trial support from argenx and Alexion, consultancies for argenx, HUMA and UCB Pharma and research funding from NMD Pharma, with all reimbursements received by Leiden University Medical Center. He is a member of the European Reference Network for Rare Neuromuscular Diseases (ERN EURO-NMD). The remaining authors declare no competing interests., (© 2024. The Author(s).)- Published
- 2024
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30. Genome-wide meta-analysis conducted in three large biobanks expands the genetic landscape of lumbar disc herniations.
- Author
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Salo V, Määttä J, Sliz E, Reimann E, Mägi R, Reis K, Elhanas AG, Reigo A, Palta P, Esko T, Karppinen J, and Kettunen J
- Subjects
- Humans, Biological Specimen Banks, Estonia epidemiology, Intervertebral Disc Degeneration genetics, Intervertebral Disc Degeneration epidemiology, Lumbar Vertebrae pathology, United Kingdom epidemiology, Genetic Predisposition to Disease, Genome-Wide Association Study, Intervertebral Disc Displacement genetics, Intervertebral Disc Displacement epidemiology, Polymorphism, Single Nucleotide
- Abstract
Given that lumbar disc herniation (LDH) is a prevalent spinal condition that causes significant individual suffering and societal costs, the genetic basis of LDH has received relatively little research. Our aim is to increase understanding of the genetic factors influencing LDH. We perform a genome-wide association analysis (GWAS) of LDH in the FinnGen project and in Estonian and UK biobanks, followed by a genome-wide meta-analysis to combine the results. In the meta-analysis, we identify 41 loci that have not been associated with LDH in prior studies on top of the 23 known risk loci. We detect LDH-associated loci in the vicinity of genes related to inflammation, disc-related structures, and synaptic transmission. Overall, our research contributes to a deeper understanding of the genetic factors behind LDH, potentially paving the way for the development of new therapeutics, prevention methods, and treatments for symptomatic LDH in the future., (© 2024. The Author(s).)
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- 2024
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31. Persistent Depression and Suicidal Ideation in People Living with HIV in Tanzania: A Longitudinal Cohort Study.
- Author
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Willkens M, Fadhil S, Reis K, Mwita M, Ruselu G, Desderius B, Kisigo GA, and Peck R
- Subjects
- Humans, Male, Female, Adult, Longitudinal Studies, Tanzania epidemiology, Prevalence, Middle Aged, Risk Factors, Logistic Models, Suicidal Ideation, HIV Infections psychology, HIV Infections epidemiology, HIV Infections drug therapy, Depression epidemiology, Depression psychology
- Abstract
Suicidal ideation and depression are common in people living with HIV (PLWH) in sub-Saharan Africa, but longitudinal data on their persistence in the modern antiretroviral therapy era are lacking. We examined the prevalence of persistent suicidal ideation and depression symptoms using the PHQ-9 in a well-characterized cohort of PLWH and HIV-uninfected community controls. Multivariable logistic regression models were used to determine the relationship between HIV and persistent depression and suicidal ideation. Persistent suicidal ideation was more common in PLWH but there was no difference in persistent depression by HIV status. Approximately one out of five participants with depression at baseline had persistent depression after 12-24 months and only about one out of four participants reporting suicidal ideation at baseline had persistent suicidal ideation after 12-24 months. HIV was associated with suicidal ideation at baseline. Persistent suicidal ideation was significantly associated with HIV immune non-response (p = 0.022). These findings highlight the need for integration of mental health services into HIV care in sub-Saharan Africa with a focus on suicide prevention., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2024
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32. Distinct and shared genetic architectures of gestational diabetes mellitus and type 2 diabetes.
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Elliott A, Walters RK, Pirinen M, Kurki M, Junna N, Goldstein JI, Reeve MP, Siirtola H, Lemmelä SM, Turley P, Lahtela E, Mehtonen J, Reis K, Elnahas AG, Reigo A, Palta P, Esko T, Mägi R, Palotie A, Daly MJ, and Widén E
- Subjects
- Pregnancy, Female, Humans, Genome-Wide Association Study, Placenta, Diabetes Mellitus, Type 2 genetics, Diabetes, Gestational genetics, Islets of Langerhans
- Abstract
Gestational diabetes mellitus (GDM) is a common metabolic disorder affecting more than 16 million pregnancies annually worldwide
1,2 . GDM is related to an increased lifetime risk of type 2 diabetes (T2D)1-3 , with over a third of women developing T2D within 15 years of their GDM diagnosis. The diseases are hypothesized to share a genetic predisposition1-7 , but few studies have sought to uncover the genetic underpinnings of GDM. Most studies have evaluated the impact of T2D loci only8-10 , and the three prior genome-wide association studies of GDM11-13 have identified only five loci, limiting the power to assess to what extent variants or biological pathways are specific to GDM. We conducted the largest genome-wide association study of GDM to date in 12,332 cases and 131,109 parous female controls in the FinnGen study and identified 13 GDM-associated loci, including nine new loci. Genetic features distinct from T2D were identified both at the locus and genomic scale. Our results suggest that the genetics of GDM risk falls into the following two distinct categories: one part conventional T2D polygenic risk and one part predominantly influencing mechanisms disrupted in pregnancy. Loci with GDM-predominant effects map to genes related to islet cells, central glucose homeostasis, steroidogenesis and placental expression., (© 2024. The Author(s).)- Published
- 2024
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33. Differentiated service delivery framework for people with multidrug-resistant tuberculosis and HIV co-infection.
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Reis K, Wolf A, Perumal R, Seepamore B, Guzman K, Ross J, Cheung K, Amico KR, Brust JCM, Padayatchi N, Friedland G, Naidoo K, Daftary A, Zelnick J, and O'Donnell M
- Abstract
Introduction: For people living with HIV/AIDS, care is commonly delivered through Differentiated Service Delivery (DSD). Although people with multidrug-resistant tuberculosis (MDR-TB) and HIV/AIDS experience severe treatment associated challenges, there is no DSD model to support their treatment. In this study, we defined patterns of medication adherence and characterized longitudinal barriers to inform development of an MDR-TB/HIV DSD framework., Methods: Adults with MDR-TB and HIV initiating bedaquiline (BDQ) and receiving antiretroviral therapy (ART) in KwaZulu-Natal, South Africa, were enrolled and followed through the end of MDR-TB treatment. Electronic dose monitoring devices (EDM) measured BDQ and ART adherence. Longitudinal focus groups were conducted and transcripts analyzed thematically to describe discrete treatment stage-specific and cross-cutting treatment challenges., Results: 283 participants were enrolled and followed through treatment completion (median 17.8 months [IQR 16.5-20.2]). Thirteen focus groups were conducted. Most participants (82.7%, 234/283) maintained high adherence (mean BDQ adherence 95.3%; mean ART adherence 85.5%), but an adherence-challenged subpopulation with <85% cumulative adherence (17.3%, 49/283) had significant declines in mean weekly BDQ adherence from 94.9% to 39.9% (p<0.0001) and mean weekly ART adherence from 83.9% to 26.6% (p<0.0001) over 6 months. Psychosocial, behavioral, and structural obstacles identified in qualitative data were associated with adherence deficits in discrete treatment stages, and identified potential stage specific interventions., Conclusion: A DSD framework for MDR-TB/HIV should intensify support for adherence-challenged subpopulations, provide multi-modal support for adherence across the treatment course and account for psychosocial, behavioral, and structural challenges linked to discrete treatment stages., Competing Interests: The authors declare no conflicts of interest., (Copyright © 2024 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2024
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34. Transcutaneous Electric Nerve Stimulation in Animal Model Studies: From Neural Mechanisms to Biological Effects for Analgesia.
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Tavares Oliveira M, Maciel Santos M, Lucas Mayara da Cruz Reis K, Resende Oliveira L, and DeSantana JM
- Subjects
- Rats, Animals, Rats, Sprague-Dawley, Pain, Pain Management, Hyperalgesia, Models, Animal, Transcutaneous Electric Nerve Stimulation methods
- Abstract
Objective: This systematic and meta-analysis review evaluated the transcutaneous electrical nerve stimulation (TENS)-induced action mechanisms for animal analgesia., Materials and Methods: Two independent investigators identified relevant articles published until February 2021 through a literature review, and a random-effects meta-analysis was performed to synthesize the results., Results: Of the 6984 studies found in the data base search, 53 full-text articles were selected and used in the systematic review. Most studies used Sprague Dawley rats (66.03%). High-frequency TENS was applied to at least one group in 47 studies, and most applications were performed for 20 minutes (64.15%). Mechanical hyperalgesia was analyzed as the primary outcome in 52.83% of the studies and thermal hyperalgesia in 23.07% of studies using a heated surface. More than 50% of the studies showed a low risk of bias on allocation concealment, random housing, selective outcome reporting, and acclimatization before the behavioral tests. Blinding was not performed in only one study and random outcome assessment in another study; acclimatization before the behavioral tests was not performed in just one study. Many studies had an uncertain risk of bias. Meta-analyses indicated no difference between low-frequency and high-frequency TENS with variations among the pain models., Conclusions: This systematic review and meta-analysis suggests that TENS has presented a substantial scientific foundation for its hypoalgesic effect in preclinical studies for analgesia., (Copyright © 2023 International Neuromodulation Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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35. Adaptive evaluation of mHealth and conventional adherence support interventions to optimize outcomes with new treatment regimens for drug-resistant tuberculosis and HIV in South Africa (ADAP-TIV): study protocol for an adaptive randomized controlled trial.
- Author
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Ross J, Perumal R, Wolf A, Zulu M, Guzman K, Seepamore B, Reis K, Nyilana H, Hlathi S, Narasimmulu R, Cheung YKK, Amico KR, Friedland G, Daftary A, Zelnick JR, Naidoo K, and O'Donnell MR
- Subjects
- Adult, Humans, Prospective Studies, Randomized Controlled Trials as Topic, South Africa epidemiology, Treatment Outcome, HIV Infections diagnosis, HIV Infections drug therapy, HIV Infections complications, Tuberculosis, Multidrug-Resistant diagnosis, Tuberculosis, Multidrug-Resistant drug therapy
- Abstract
Background: Highly effective, short-course, bedaquiline-containing treatment regimens for multidrug-resistant tuberculosis (MDR-TB) and integrase strand transfer inhibitor (INSTI)-containing fixed dose combination antiretroviral therapy (ART) have radically transformed treatment for MDR-TB and HIV. However, without advances in adherence support, we may not realize the full potential of these therapeutics. The primary objective of this study is to compare the effect of adherence support interventions on clinical and biological endpoints using an adaptive randomized platform., Methods: This is a prospective, adaptive, randomized controlled trial comparing the effectiveness of four adherence support strategies on a composite clinical outcome in adults with MDR-TB and HIV initiating bedaquiline-containing MDR-TB treatment regimens and receiving ART in KwaZulu-Natal, South Africa. Trial arms include (1) enhanced standard of care, (2) psychosocial support, (3) mHealth using cellular-enabled electronic dose monitoring, and (4) combined mHealth and psychosocial support. The level of support will be titrated using a differentiated service delivery (DSD)-informed assessment of treatment support needs. The composite primary outcome will include survival, negative TB culture, retention in care, and undetectable HIV viral load at month 12. Secondary outcomes will include individual components of the primary outcome and quantitative evaluation of adherence on TB and HIV treatment outcomes., Discussion: This trial will evaluate the contribution of different modes of adherence support on MDR-TB and HIV outcomes with WHO-recommended all-oral MDR-TB regimens and ART in a high-burden operational setting. We will also assess the utility of a DSD framework to pragmatically adjust levels of MDR-TB and HIV treatment support., Trial Registration: ClinicalTrials.gov NCT05633056. Registered on 1 December 2022., (© 2023. The Author(s).)
- Published
- 2023
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36. Effects of Pesticides on Red Rot of Planted Sugarcane.
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Cristina da Silva Reis K, Savario CF, and Hoy JW
- Subjects
- Thiamethoxam, Plant Diseases prevention & control, Plant Diseases microbiology, Edible Grain, Fungicides, Industrial pharmacology, Pesticides pharmacology, Saccharum microbiology, Insecticides pharmacology
- Abstract
Red rot, caused by Colletotrichum falcatum , is an important constraint to sugarcane production. In Louisiana, red rot primarily affects planted seed-cane and is more severe when billets (stalk sections) are planted rather than whole stalks. At planting, application of seed-treatment pesticides, particularly a combination of a fungicide and the insecticide thiamethoxam, has improved stand establishment and increased yields in billet plantings in Louisiana. However, information on the effect of chemicals on disease development is lacking. Greenhouse experiments were conducted to evaluate stalk rot symptom severity and initial plant growth for billets dip-treated with a combination of the fungicides azoxystrobin and propiconazole, thiamethoxam, a combination of both fungicides and the insecticide, and, as a control, untreated billets. Reductions in disease severity recorded for different treatments were similar for billets inoculated with the fungus or exposed to natural inoculum. Disease severity was consistently reduced by the combination treatment, while reductions resulting from treatment with fungicides and insecticide alone were variable. Reductions occurred for both internode and node rot severity. The effects of pesticide treatments on plant growth after 6 weeks were minor; however, there was evidence of disease adversely affecting germination, particularly for nontreated billets exposed to natural inoculum, where germination was reduced by one third. The treatments that reduced disease severity prevented this reduction. The results provide evidence that reduction in disease severity is an important contributor to the stand establishment and yield improvements observed for treated billets in field experiments., Competing Interests: The author(s) declare no conflict of interest.
- Published
- 2023
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37. European and multi-ancestry genome-wide association meta-analysis of atopic dermatitis highlights importance of systemic immune regulation.
- Author
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Budu-Aggrey A, Kilanowski A, Sobczyk MK, Shringarpure SS, Mitchell R, Reis K, Reigo A, Mägi R, Nelis M, Tanaka N, Brumpton BM, Thomas LF, Sole-Navais P, Flatley C, Espuela-Ortiz A, Herrera-Luis E, Lominchar JVT, Bork-Jensen J, Marenholz I, Arnau-Soler A, Jeong A, Fawcett KA, Baurecht H, Rodriguez E, Alves AC, Kumar A, Sleiman PM, Chang X, Medina-Gomez C, Hu C, Xu CJ, Qi C, El-Heis S, Titcombe P, Antoun E, Fadista J, Wang CA, Thiering E, Wu B, Kress S, Kothalawala DM, Kadalayil L, Duan J, Zhang H, Hadebe S, Hoffmann T, Jorgenson E, Choquet H, Risch N, Njølstad P, Andreassen OA, Johansson S, Almqvist C, Gong T, Ullemar V, Karlsson R, Magnusson PKE, Szwajda A, Burchard EG, Thyssen JP, Hansen T, Kårhus LL, Dantoft TM, Jeanrenaud ACSN, Ghauri A, Arnold A, Homuth G, Lau S, Nöthen MM, Hübner N, Imboden M, Visconti A, Falchi M, Bataille V, Hysi P, Ballardini N, Boomsma DI, Hottenga JJ, Müller-Nurasyid M, Ahluwalia TS, Stokholm J, Chawes B, Schoos AM, Esplugues A, Bustamante M, Raby B, Arshad S, German C, Esko T, Milani LA, Metspalu A, Terao C, Abuabara K, Løset M, Hveem K, Jacobsson B, Pino-Yanes M, Strachan DP, Grarup N, Linneberg A, Lee YA, Probst-Hensch N, Weidinger S, Jarvelin MR, Melén E, Hakonarson H, Irvine AD, Jarvis D, Nijsten T, Duijts L, Vonk JM, Koppelmann GH, Godfrey KM, Barton SJ, Feenstra B, Pennell CE, Sly PD, Holt PG, Williams LK, Bisgaard H, Bønnelykke K, Curtin J, Simpson A, Murray C, Schikowski T, Bunyavanich S, Weiss ST, Holloway JW, Min JL, Brown SJ, Standl M, and Paternoster L
- Subjects
- Humans, Genetic Predisposition to Disease genetics, Hispanic or Latino genetics, Black People, Polymorphism, Single Nucleotide, Genome-Wide Association Study, Dermatitis, Atopic genetics
- Abstract
Atopic dermatitis (AD) is a common inflammatory skin condition and prior genome-wide association studies (GWAS) have identified 71 associated loci. In the current study we conducted the largest AD GWAS to date (discovery N = 1,086,394, replication N = 3,604,027), combining previously reported cohorts with additional available data. We identified 81 loci (29 novel) in the European-only analysis (which all replicated in a separate European analysis) and 10 additional loci in the multi-ancestry analysis (3 novel). Eight variants from the multi-ancestry analysis replicated in at least one of the populations tested (European, Latino or African), while two may be specific to individuals of Japanese ancestry. AD loci showed enrichment for DNAse I hypersensitivity and eQTL associations in blood. At each locus we prioritised candidate genes by integrating multi-omic data. The implicated genes are predominantly in immune pathways of relevance to atopic inflammation and some offer drug repurposing opportunities., (© 2023. Springer Nature Limited.)
- Published
- 2023
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38. Adaptive evaluation of mHealth and conventional adherence support interventions to optimize outcomes with new treatment regimens for drug-resistant tuberculosis and HIV in South Africa (ADAP-TIV): Study protocol for an adaptive randomized controlled trial.
- Author
-
Ross JE, Perumal R, Wolf A, Zulu M, Guzman K, Seepamore B, Reis K, Nyilana H, Hlathi S, Narasimmulu R, Cheung YKK, Amico KR, Friedland G, Daftary A, Zelnick J, Naidoo K, and O'Donnell MR
- Abstract
Background: Highly effective, short course, bedaquiline-containing treatment regimens for multidrug-resistant tuberculosis (MDR-TB) and integrase strand transfer inhibitor (INSTI)-containing fixed dose combination antiretroviral therapy (ART) have radically transformed treatment for MDR-TB and HIV. However, without advances in adherence support, we may not realize the full potential of these therapeutics. The primary objective of this study is to compare the effect of adherence support interventions on clinical and biological endpoints using an adaptive randomized platform., Methods: This is a prospective, adaptive, randomized controlled trial comparing the effectiveness of four adherence support strategies on a composite clinical outcome in adults with MDR-TB and HIV initiating bedaquiline-containing MDR-TB treatment regimens and receiving ART in KwaZulu-Natal, South Africa. Trial arms include 1) enhanced standard of care; 2) psychosocial support; 3) mHealth using cellular- enabled electronic dose monitoring; 4) combined mHealth and psychosocial support. The level of support will be titrated using a differentiated service delivery (DSD)-informed assessment of treatment support needs. The composite primary outcome will be include survival, negative TB culture, retention in care and undetectable HIV viral load at month 12. Secondary outcomes will include individual components of the primary outcome and quantitative evaluation of adherence on TB and HIV treatment outcomes., Discussion: This trial will evaluate the contribution of different modes of adherence support on MDR-TB and HIV outcomes with WHO recommended all-oral MDR-TB regimens and ART in a high-burden operational setting. We will also assess the utility of a DSD framework to pragmatically adjust levels of MDR-TB and HIV treatment support., Competing Interests: Competing interests The authors declare that they have no competing interests.
- Published
- 2023
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39. Climate-friendly, health-promoting, and culturally acceptable diets for German adult omnivores, pescatarians, vegetarians, and vegans - a linear programming approach.
- Author
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Masino T, Colombo PE, Reis K, Tetens I, and Parlesak A
- Subjects
- Female, Male, Animals, Humans, Programming, Linear, Diet, Vegetarians, Vegetables, Vegans, Diet, Vegan
- Abstract
Objectives: A frequently suggested approach to reduce greenhouse gas emissions (GHGEs) caused by food production is to reduce the intake of animal products, which can create nutritional deficiencies. This study aimed to identify culturally acceptable nutritional solutions for German adults that are both climate friendly and health promoting., Methods: Linear programming was applied to optimize the food supply for omnivores, pescatarians, vegetarians, and vegans considering nutritional adequacy, health promotion, GHGEs, affordability, and cultural acceptability by approaching German national food consumption., Results: Implementing dietary reference values and omitting meat (products) reduced the GHGEs by ≤52%. The vegan diet was alone in staying below the Intergovernmental Panel on Climate Change (IPCC) threshold of 1.6 kg carbon dioxide equivalents per person per day. The optimized omnivorous diet constrained to meet this goal maintained ≥50% of each baseline food and, on average, deviated from baseline by 36% for women and 64% for men. Butter, milk, meat products, and cheese were reduced by half for both sexes, whereas bread, bakery goods, milk, and meat were reduced mainly for men. The intake of vegetables, cereals, pulses, mushrooms, and fish increased by between 63% and 260% for the omnivores, compared with baseline. Besides the vegan dietary pattern, all optimized diets cost less than the baseline diet., Conclusions: A linear programming approach for optimizing the German habitual diet to be healthy, affordable, and meet the IPCC GHGE threshold was possible for several dietary patterns and appears to be a feasible way forward toward including climate goals into food-based dietary guidelines., (Copyright © 2023 Elsevier Inc. All rights reserved.)
- Published
- 2023
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40. Safety and immunogenicity of the anti-cocaine vaccine UFMG-VAC-V4N2 in a non-human primate model.
- Author
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Sabato B, Augusto PSA, Lima Gonçalves Pereira R, Coutinho Batista Esteves F, Caligiorne SM, Rodrigues Dias Assis B, Apolo Correia Marcelino S, Pires do Espírito Santo L, Dias Dos Reis K, Da Silva Neto L, Goulart G, de Fátima Â, Pierezan F, Toshio Fujiwara R, Castro M, and Garcia F
- Subjects
- Animals, Antibodies, Immunogenicity, Vaccine, Primates, Cocaine adverse effects, Cocaine-Related Disorders therapy, Vaccines
- Abstract
A promising strategy for cocaine addiction treatment is the anti-drug vaccine. These vaccines induce the production of anticocaine antibodies, capable of linking to cocaine, and decrease the passage of cocaine throughout the blood-brain barrier, decreasing drug activity in the brain. Our research group developed a new vaccine candidate, the UFMG-V4N2, to treat cocaine use disorders (CUD) using an innovative carrier based on calixarenes. This study assessed the safety and immunogenicity of the anti-cocaine vaccine UFMG-VAC-V4N2 in a non-human primate toxicity study using single and multiple vaccine doses. The UFMG-VAC-V4N2 yielded only mild effects in the injection site and did not influence the general health, feeding behavior, or hematological, renal, hepatic, or metabolic parameters in the vaccinated marmosets. The anti-cocaine vaccine UFMG-VAC-V4N2 presented a favorable safety profile and induced the expected immune response in a non-human primate model of Callithrix penicillata. This preclinical UFMG-VAC-V4N2 study responds to the criteria required by international regulatory agencies contributing to future anticocaine clinical trials of this anti-cocaine vaccine., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
- Published
- 2023
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41. Author Correction: FinnGen provides genetic insights from a well-phenotyped isolated population.
- Author
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Kurki MI, Karjalainen J, Palta P, Sipilä TP, Kristiansson K, Donner KM, Reeve MP, Laivuori H, Aavikko M, Kaunisto MA, Loukola A, Lahtela E, Mattsson H, Laiho P, Della Briotta Parolo P, Lehisto AA, Kanai M, Mars N, Rämö J, Kiiskinen T, Heyne HO, Veerapen K, Rüeger S, Lemmelä S, Zhou W, Ruotsalainen S, Pärn K, Hiekkalinna T, Koskelainen S, Paajanen T, Llorens V, Gracia-Tabuenca J, Siirtola H, Reis K, Elnahas AG, Sun B, Foley CN, Aalto-Setälä K, Alasoo K, Arvas M, Auro K, Biswas S, Bizaki-Vallaskangas A, Carpen O, Chen CY, Dada OA, Ding Z, Ehm MG, Eklund K, Färkkilä M, Finucane H, Ganna A, Ghazal A, Graham RR, Green EM, Hakanen A, Hautalahti M, Hedman ÅK, Hiltunen M, Hinttala R, Hovatta I, Hu X, Huertas-Vazquez A, Huilaja L, Hunkapiller J, Jacob H, Jensen JN, Joensuu H, John S, Julkunen V, Jung M, Junttila J, Kaarniranta K, Kähönen M, Kajanne R, Kallio L, Kälviäinen R, Kaprio J, Kerimov N, Kettunen J, Kilpeläinen E, Kilpi T, Klinger K, Kosma VM, Kuopio T, Kurra V, Laisk T, Laukkanen J, Lawless N, Liu A, Longerich S, Mägi R, Mäkelä J, Mäkitie A, Malarstig A, Mannermaa A, Maranville J, Matakidou A, Meretoja T, Mozaffari SV, Niemi MEK, Niemi M, Niiranen T, O Donnell CJ, Obeidat ME, Okafo G, Ollila HM, Palomäki A, Palotie T, Partanen J, Paul DS, Pelkonen M, Pendergrass RK, Petrovski S, Pitkäranta A, Platt A, Pulford D, Punkka E, Pussinen P, Raghavan N, Rahimov F, Rajpal D, Renaud NA, Riley-Gillis B, Rodosthenous R, Saarentaus E, Salminen A, Salminen E, Salomaa V, Schleutker J, Serpi R, Shen HY, Siegel R, Silander K, Siltanen S, Soini S, Soininen H, Sul JH, Tachmazidou I, Tasanen K, Tienari P, Toppila-Salmi S, Tukiainen T, Tuomi T, Turunen JA, Ulirsch JC, Vaura F, Virolainen P, Waring J, Waterworth D, Yang R, Nelis M, Reigo A, Metspalu A, Milani L, Esko T, Fox C, Havulinna AS, Perola M, Ripatti S, Jalanko A, Laitinen T, Mäkelä TP, Plenge R, McCarthy M, Runz H, Daly MJ, and Palotie A
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- 2023
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42. FinnGen provides genetic insights from a well-phenotyped isolated population.
- Author
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Kurki MI, Karjalainen J, Palta P, Sipilä TP, Kristiansson K, Donner KM, Reeve MP, Laivuori H, Aavikko M, Kaunisto MA, Loukola A, Lahtela E, Mattsson H, Laiho P, Della Briotta Parolo P, Lehisto AA, Kanai M, Mars N, Rämö J, Kiiskinen T, Heyne HO, Veerapen K, Rüeger S, Lemmelä S, Zhou W, Ruotsalainen S, Pärn K, Hiekkalinna T, Koskelainen S, Paajanen T, Llorens V, Gracia-Tabuenca J, Siirtola H, Reis K, Elnahas AG, Sun B, Foley CN, Aalto-Setälä K, Alasoo K, Arvas M, Auro K, Biswas S, Bizaki-Vallaskangas A, Carpen O, Chen CY, Dada OA, Ding Z, Ehm MG, Eklund K, Färkkilä M, Finucane H, Ganna A, Ghazal A, Graham RR, Green EM, Hakanen A, Hautalahti M, Hedman ÅK, Hiltunen M, Hinttala R, Hovatta I, Hu X, Huertas-Vazquez A, Huilaja L, Hunkapiller J, Jacob H, Jensen JN, Joensuu H, John S, Julkunen V, Jung M, Junttila J, Kaarniranta K, Kähönen M, Kajanne R, Kallio L, Kälviäinen R, Kaprio J, Kerimov N, Kettunen J, Kilpeläinen E, Kilpi T, Klinger K, Kosma VM, Kuopio T, Kurra V, Laisk T, Laukkanen J, Lawless N, Liu A, Longerich S, Mägi R, Mäkelä J, Mäkitie A, Malarstig A, Mannermaa A, Maranville J, Matakidou A, Meretoja T, Mozaffari SV, Niemi MEK, Niemi M, Niiranen T, O Donnell CJ, Obeidat ME, Okafo G, Ollila HM, Palomäki A, Palotie T, Partanen J, Paul DS, Pelkonen M, Pendergrass RK, Petrovski S, Pitkäranta A, Platt A, Pulford D, Punkka E, Pussinen P, Raghavan N, Rahimov F, Rajpal D, Renaud NA, Riley-Gillis B, Rodosthenous R, Saarentaus E, Salminen A, Salminen E, Salomaa V, Schleutker J, Serpi R, Shen HY, Siegel R, Silander K, Siltanen S, Soini S, Soininen H, Sul JH, Tachmazidou I, Tasanen K, Tienari P, Toppila-Salmi S, Tukiainen T, Tuomi T, Turunen JA, Ulirsch JC, Vaura F, Virolainen P, Waring J, Waterworth D, Yang R, Nelis M, Reigo A, Metspalu A, Milani L, Esko T, Fox C, Havulinna AS, Perola M, Ripatti S, Jalanko A, Laitinen T, Mäkelä TP, Plenge R, McCarthy M, Runz H, Daly MJ, and Palotie A
- Subjects
- Humans, Middle Aged, Estonia, Finland, Genetic Predisposition to Disease genetics, Genome-Wide Association Study, Meta-Analysis as Topic, United Kingdom, White People genetics, Disease genetics, Gene Frequency genetics, Phenotype
- Abstract
Population isolates such as those in Finland benefit genetic research because deleterious alleles are often concentrated on a small number of low-frequency variants (0.1% ≤ minor allele frequency < 5%). These variants survived the founding bottleneck rather than being distributed over a large number of ultrarare variants. Although this effect is well established in Mendelian genetics, its value in common disease genetics is less explored
1,2 . FinnGen aims to study the genome and national health register data of 500,000 Finnish individuals. Given the relatively high median age of participants (63 years) and the substantial fraction of hospital-based recruitment, FinnGen is enriched for disease end points. Here we analyse data from 224,737 participants from FinnGen and study 15 diseases that have previously been investigated in large genome-wide association studies (GWASs). We also include meta-analyses of biobank data from Estonia and the United Kingdom. We identified 30 new associations, primarily low-frequency variants, enriched in the Finnish population. A GWAS of 1,932 diseases also identified 2,733 genome-wide significant associations (893 phenome-wide significant (PWS), P < 2.6 × 10-11 ) at 2,496 (771 PWS) independent loci with 807 (247 PWS) end points. Among these, fine-mapping implicated 148 (73 PWS) coding variants associated with 83 (42 PWS) end points. Moreover, 91 (47 PWS) had an allele frequency of <5% in non-Finnish European individuals, of which 62 (32 PWS) were enriched by more than twofold in Finland. These findings demonstrate the power of bottlenecked populations to find entry points into the biology of common diseases through low-frequency, high impact variants., (© 2023. The Author(s).)- Published
- 2023
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43. Changing Demographic Trends in spine trauma: The presentation and outcome of Major Spine Trauma in the elderly.
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Nagassima Rodrigues Dos Reis K, McDonnell JM, Ahern DP, Evans S, Gibbons D, and Butler JS
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- Humans, Aged, Adolescent, Young Adult, Adult, Middle Aged, Accidents, Traffic, Length of Stay, Databases, Factual, Demography, Injury Severity Score, Retrospective Studies, Spinal Injuries diagnosis, Spinal Injuries epidemiology, Spinal Injuries therapy
- Abstract
Introduction: Major trauma has seen a demographic shift in recent years and it is expected that the elderly population will comprise a greater burden on the major trauma service in the near future. However, whether a similar trend exists in those undergoing operative intervention for spinal trauma remains to be elucidated., Aims: To compare the presentation and outcomes of patients ≥65 years of age sustaining spine trauma to those <65 years at a national tertiary referral spine centre., Methods: The local Trauma Audit Research Network (TARN) database was analysed to identify spinal patients referred to our institution, a national tertiary referral centre, between 01/2016 and 05/2019. Patients were divided into a young cohort (16-64 years old) and an elderly cohort (> 64 years old). No explicit distinction was made between major and minor spine trauma cases. Variables analysed included patient demographics, injury severity, mortality, interventions, mechanism of injury and length of hospital stay., Results: A total of 669 patients were admitted of which 480 patients underwent operative intervention for spinal trauma. Within the elderly cohort, this represented 75.3% of cases. Among the younger population, road traffic collisions were the most common mechanism of injury (37.1%), while low falls (<2 m) (57.4%) were the most common mechanism among the older population. Patients ≥65 years old had significantly longer length of stay (21 days [1-194] v 14 days [1-183]) and suffered higher 30-day mortality rates (4.6% [0-12] v 0.97% [0-4])., Conclusion: Orthopaedic spinal trauma in older people is associated with a significantly higher mortality rate as well as a longer duration of hospitalization. Even though severity of injury is similar for both young and old patients, the mechanism of injury for the older population is of typically much lower energy compared to the high energy trauma affecting younger patients., Competing Interests: Conflicts of interest None., (Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2022
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44. What Is the Superior Screw Fixation Technique for Posterior Decompression and Fusion in the Management of Cervical Spondylotic Myelopathy: Pedicle Screw or Lateral Mass Screw?
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Evans S, Nagassima Rodrigues Dos Reis K, McDonnell JM, Ahern DP, Gibbons D, and Butler JS
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- Cervical Vertebrae surgery, Decompression, Humans, Pedicle Screws, Spinal Cord Diseases surgery, Spinal Fusion methods
- Abstract
Competing Interests: The authors declare no conflict of interest.
- Published
- 2022
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45. Going Beyond Rote Auditory Learning: Neural Patterns of Generalized Auditory Learning.
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Heald SLM, Van Hedger SC, Veillette J, Reis K, Snyder JS, and Nusbaum HC
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- Acoustic Stimulation, Auditory Perception, Evoked Potentials, Auditory physiology, Humans, Learning, Phonetics, Speech Perception physiology
- Abstract
The ability to generalize across specific experiences is vital for the recognition of new patterns, especially in speech perception considering acoustic-phonetic pattern variability. Indeed, behavioral research has demonstrated that listeners are able via a process of generalized learning to leverage their experiences of past words said by difficult-to-understand talker to improve their understanding for new words said by that talker. Here, we examine differences in neural responses to generalized versus rote learning in auditory cortical processing by training listeners to understand a novel synthetic talker. Using a pretest-posttest design with EEG, participants were trained using either (1) a large inventory of words where no words were repeated across the experiment (generalized learning) or (2) a small inventory of words where words were repeated (rote learning). Analysis of long-latency auditory evoked potentials at pretest and posttest revealed that rote and generalized learning both produced rapid changes in auditory processing, yet the nature of these changes differed. Generalized learning was marked by an amplitude reduction in the N1-P2 complex and by the presence of a late negativity wave in the auditory evoked potential following training; rote learning was marked only by temporally later scalp topography differences. The early N1-P2 change, found only for generalized learning, is consistent with an active processing account of speech perception, which proposes that the ability to rapidly adjust to the specific vocal characteristics of a new talker (for which rote learning is rare) relies on attentional mechanisms to selectively modify early auditory processing sensitivity., (© 2022 Massachusetts Institute of Technology.)
- Published
- 2022
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46. Sex-dependent correlates of arterial stiffness in Tanzanian adults.
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Karand JC, Reis K, Stephano PF, Gargurevich N, Zhou J, Desderius B, Fadhil S, Ladha Y, Rosengard R, Kowal DR, and Peck RN
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- Adolescent, Adult, Aged, Cardiovascular Diseases etiology, Cardiovascular Diseases physiopathology, Cohort Studies, Cross-Sectional Studies, Female, Humans, Male, Middle Aged, Prospective Studies, Pulse Wave Analysis, Risk Factors, Sex Factors, Tanzania epidemiology, Young Adult, Cardiovascular Diseases epidemiology, Vascular Stiffness physiology
- Abstract
Objective: Arterial stiffness is a known indicator for cardiovascular disease. However, the factors that lead to arterial stiffening have primarily been studied in participants from high-income countries. Here, we examine clinical and lifestyle metrics in relation to arterial stiffness in Tanzanian adults., Methods: We performed pulse wave velocity (PWV), the gold standard measure of arterial stiffness, on 808 Tanzanian adults (ages 18-65) enrolled in a longitudinal cohort studying trends in blood pressure., Results: As expected, PWV was strongly associated with age, blood pressure and sex. We controlled for these factors in our statistical analysis. Lifestyle metrics were compared across multiple PWV quantiles. We found that determinants of PWV varied by sex: in female participants, PWV was associated with common obesity metrics and menopause, while in male participants, PWV was associated with HIV status and duration of anti-retroviral therapy (ART). Further clinical and lifestyle factors such as marriage status and type of occupation were also significantly associated with PWV and moderated by sex., Conclusion: Together, our data demonstrate the importance of studying sex-specific causal pathways for arterial stiffness and of including under-represented populations in these studies., (© 2021 John Wiley & Sons Ltd.)
- Published
- 2021
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47. Expertise Modulates Neural Stimulus-Tracking.
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Brookshire G, Mangelsdorf HH, Sava-Segal C, Reis K, Nusbaum H, Goldin-Meadow S, and Casasanto D
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- Attention, Brain, Humans, Periodicity, Electroencephalography, Speech
- Abstract
How does the brain anticipate information in language? When people perceive speech, low-frequency (<10 Hz) activity in the brain synchronizes with bursts of sound and visual motion. This phenomenon, called cortical stimulus-tracking, is thought to be one way that the brain predicts the timing of upcoming words, phrases, and syllables. In this study, we test whether stimulus-tracking depends on domain-general expertise or on language-specific prediction mechanisms. We go on to examine how the effects of expertise differ between frontal and sensory cortex. We recorded electroencephalography (EEG) from human participants who were experts in either sign language or ballet, and we compared stimulus-tracking between groups while participants watched videos of sign language or ballet. We measured stimulus-tracking by computing coherence between EEG recordings and visual motion in the videos. Results showed that stimulus-tracking depends on domain-general expertise, and not on language-specific prediction mechanisms. At frontal channels, fluent signers showed stronger coherence to sign language than to dance, whereas expert dancers showed stronger coherence to dance than to sign language. At occipital channels, however, the two groups of participants did not show different patterns of coherence. These results are difficult to explain by entrainment of endogenous oscillations, because neither sign language nor dance show any periodicity at the frequencies of significant expertise-dependent stimulus-tracking. These results suggest that the brain may rely on domain-general predictive mechanisms to optimize perception of temporally-predictable stimuli such as speech, sign language, and dance., (Copyright © 2021 Brookshire et al.)
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- 2021
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48. Artificial Intelligence and the Future of Spine Surgery: A Practical Supplement to Modern Spine Care?
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Nagassima Rodrigues Dos Reis K, Evans S, McDonnell JM, Ahern DP, and Butler JS
- Abstract
Competing Interests: The authors declare no conflict of interest.
- Published
- 2021
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49. Nocturnal dipping of heart rate and blood pressure in people with HIV in Tanzania.
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Nolan C, Reis K, Fadhil S, Etyang A, Ezeomah C, Kingery JR, Desderius B, Lee MH, Kapiga S, and Peck RN
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- Adult, Blood Pressure, Blood Pressure Monitoring, Ambulatory, Case-Control Studies, Circadian Rhythm, Heart Rate, Humans, Tanzania epidemiology, HIV Infections complications, HIV Infections epidemiology, Hypertension epidemiology
- Abstract
People with HIV (PWH) have a >2-fold greater risk for development of cardiovascular disease (CVD), which may be associated with abnormalities in 24-h ambulatory blood pressure measurement (ABPM) profile. We conducted a nested case-control study of ABPM in 137 PWH and HIV-uninfected controls with normal and high clinic blood pressure (BP) in Tanzania. Nocturnal non-dipping of heart rate (HR) was significantly more common among PWH than HIV-uninfected controls (p = .01). Nocturnal non-dipping of BP was significantly more common in PWH with normal clinic BP (p = .048). Clinical correlates of nocturnal non-dipping were similar in PWH and HIV-uninfected adults and included higher BMI, higher CD4
+ cell count, and high C-reactive protein for HR and markers of renal disease for BP. In conclusion, nocturnal non-dipping of both BP and HR was more common in PWH but further research is needed to determine causes and consequences of this difference., (© 2021 The Authors. The Journal of Clinical Hypertension published by Wiley Periodicals LLC.)- Published
- 2021
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50. Are Carbon-fiber Implants More Efficacious Than Traditional Metallic Implants for Spine Tumor Surgery?
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McDonnell JM, Nagassima Rodrigues Dos Reis K, Ahern DP, Mahon J, and Butler JS
- Abstract
Competing Interests: The authors declare no conflict of interest.
- Published
- 2021
- Full Text
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