115 results on '"R, OKA"'
Search Results
2. Deep-learning reconstruction to improve image quality of myocardial dynamic CT perfusion: comparison with hybrid iterative reconstruction
- Author
-
M. Takafuji, K. Kitagawa, S. Mizutani, R. Oka, R. Kisou, S. Sakaguchi, K. Ichikawa, D. Izumi, and H. Sakuma
- Subjects
Perfusion ,Deep Learning ,Image Processing, Computer-Assisted ,Humans ,Radiographic Image Interpretation, Computer-Assisted ,Radiology, Nuclear Medicine and imaging ,General Medicine ,Radiation Dosage ,Tomography, X-Ray Computed ,Algorithms - Published
- 2022
3. Arab American Adolescents’ Responses to Perceived Discrimination: A Phenomenological Study
- Author
-
Dorinda J. Carter Andrews, Danielle Balaghi, and Evelyn R. Oka
- Subjects
Psychiatry and Mental health ,Health (social science) ,Religious studies ,Arab americans ,Psychology ,Developmental psychology - Abstract
Racial discrimination is on the rise in the United States. Arab American Muslims is one group that has experienced an increase in perceived racial discrimination. Even less is known about Arab American Muslim Adolescents experiences of coping when faced with racial discrimination. This study aims to highlight the lived experiences of Arab American adolescents’ perceived racial discrimination as it relates to their coping experiences. There were 10 (female=5; male=5) Arab American youth ages 13-17 and identified as Muslim. Participants were recruited using purposive sampling. Using a phenomenological approach, data were collected using semi-structured individual interviews and online journals. Validity was assessed via member checks and triangulation of data using multiple participants and sources. The data were analyzed using interpretive phenomenological analysis, guided by Risk and Resilience theory and Critical Race Theory. Results highlighted three positive and three negative ways participants experienced coping to perceived racial discrimination. Implications of this study can aid psychologists in promoting positive responses to racial discrimination while also helping students recognize negative responses. Understanding the way an adolescent responds provides better insight into their psychological well-being.
- Published
- 2021
- Full Text
- View/download PDF
4. Experiences of discrimination among Black middle school adolescents: A qualitative study
- Author
-
Chimereodo Okoroji and Evelyn R. Oka
- Subjects
Schools ,Adolescent ,Critical race theory ,education ,Context (language use) ,PsycINFO ,Education ,Developmental psychology ,Developmental and Educational Psychology ,Humans ,Psychology ,Students ,Phenomenology (psychology) ,Qualitative Research ,Qualitative research - Abstract
Discrimination is a common experience among racially and ethnically minoritized (REM) youth and often results in negative health and psychological outcomes. However, few studies provide adolescents with opportunities to directly share their discriminatory experiences, especially within the school context. Using a critical race theory framework and phenomenological approach, the present study explored how Black middle school students experienced and responded to discrimination in school settings. Findings revealed that youth experienced both direct and vicarious discrimination at school from multiple sources. Additionally, their responses indicated developmental and adaptive challenges, as well as a nuanced understanding of discrimination in their daily lives. Implications regarding educators' roles in affirming and supporting Black students' experiences are discussed. (PsycInfo Database Record (c) 2021 APA, all rights reserved).
- Published
- 2021
5. Semi-Automatic Classification of Prostate Cancer from Multi-Parametric MR Imaging Using Novel Image Sequences and 3D Convolutional Neural Networks
- Author
-
B, Li, primary, R, Oka, additional, P, Xuan, additional, Y, Yoshimura, additional, and T, Nakaguchi, additional
- Published
- 2021
- Full Text
- View/download PDF
6. The relationship between polypharmacy and recovery of activities of daily living among convalescent stroke patients: A propensity score-matched analysis
- Author
-
Manabu Toyoshima, R. Oka, Eiji Kose, S. Okazoe, Hiroyuki Hayashi, and Y. Shiratsuchi
- Subjects
Polypharmacy ,Rehabilitation hospital ,medicine.medical_specialty ,Rehabilitation ,Activities of daily living ,business.industry ,medicine.medical_treatment ,Retrospective cohort study ,medicine.disease ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Propensity score matching ,medicine ,Physical therapy ,030212 general & internal medicine ,Geriatrics and Gerontology ,Medical prescription ,business ,Gerontology ,Stroke ,030217 neurology & neurosurgery - Abstract
Introduction Polypharmacy induces side effects or drug interaction for elderly patients. Whether polypharmacy negatively affects stroke rehabilitation of patients is unclear in Japan. The aim of this study was to assess the relationship between polypharmacy and recovery of daily activity among convalescent stroke patients. Methods In this retrospective cohort study, we screened 719 stroke patients who were admitted to and discharged from the Sagami Rehabilitation Hospital or the Tsurumaki Onsen Hospital between April 2012 and July 2014 in Kanagawa, Japan. Among 719 patients screened, 509 were excluded because of propensity score matching. The primary outcome was Functional Independence Measure-Motor (FIM-M) effectiveness, and participants were divided according to FIM-M effective scores into the following two groups: non-improvement (105 patients) or improvement of FIM-M effectiveness (105 patients). Results Risk factors associated with non-improvement of FIM-M effectiveness included epilepsy and number of drugs used upon admission. FIM-M effectiveness in the patients in whom five or more drugs were used upon admission was significantly lower than in those in whom one drug was used. Through this finding, we defined the use of five or more drugs as polypharmacy. Drugs with significant differences regarding polypharmacy included antihypertensive and antidiabetic drugs. Conclusions These findings suggested that polypharmacy negatively affects stroke rehabilitation outcomes. Thus, pharmacists should make attempts to respond to individual patient outcomes to optimize prescriptions, which may minimize the brunt of polypharmacy on patient outcomes.
- Published
- 2017
- Full Text
- View/download PDF
7. Comparison of Abnormal Prostate MRI and Histopathology of Prostatic Biopsy after Intravesical BCG Therapy for Non-Muscle Invasive Bladder Cancer
- Author
-
T, Mori, primary, N, Kamiya, additional, N, Hiruta, additional, S, Kato, additional, T, Somoto, additional, R, Oka, additional, T, Utsumi, additional, T, Endo, additional, M, Yano, additional, N, Kitamura, additional, T, Inaoka, additional, and H, Suzuki, additional
- Published
- 2020
- Full Text
- View/download PDF
8. Parent–Child Conflict, Acculturation Gap, Acculturative Stress, and Behavior Problems in Arab American Adolescents
- Author
-
Anisa N. Goforth, Andy V. Pham, and Evelyn R. Oka
- Subjects
Cultural Studies ,Mediation (statistics) ,Social Psychology ,Anthropology ,Cultural orientation ,Arab americans ,Parent/child conflict ,Psychology ,Social psychology ,Acculturation ,Developmental psychology - Abstract
The current study examined how acculturation gap, acculturative stress, parent–child conflict, and behavior problems are related in a sample of Arab American adolescents. Seventy-six parent–child dyads completed questionnaires assessing acculturation, parent–child conflict, and behavior problems. Parents and adolescents reported similar levels of acculturation on American mainstream orientation as well as on Arab heritage orientation. Regression analyses showed that the acculturation gap between parents and children in heritage cultural orientation significantly predicted adolescent behavior problems. Mediation analyses revealed that adolescent-reported parent–child conflict partially mediated the relation between acculturative stress and behavior problems. Parent-reported parent–child conflict partially mediated the relation between the acculturation gap and behavior problems. Current findings highlight the importance of examining adolescents’ and parents’ acculturation as well as the underpinnings of parent–child conflict in Arab American families.
- Published
- 2015
- Full Text
- View/download PDF
9. The usefulness of an application-supported nutritional intervention on non-high-density lipoprotein cholesterol in people with a risk of lifestyle-related diseases.
- Author
-
Noda Y, Kometani M, Nomura A, Noda M, Oka R, Kadono M, and Yoneda T
- Abstract
Lifestyle-related diseases, such as diabetes, are mostly caused by poor lifestyle habits; therefore, modifying these habits is important. In Japan, a system of specific health checkups (SHC) and specific health guidance (SHG) was introduced in 2008. The challenges faced include low retention rates and difficulty in maintaining results. Digital technologies can support self-management and increase patient convenience, although evidence of the usefulness of this technology for SHG is limited. This study evaluated the usefulness of nutritional guidance using a smartphone application (app) added to conventional SHG. We recruited eligible participants for SHG in Japan from November 2018 to March 2020. We assigned them to "Intervention Group: Application-Supported Nutrition Therapy" or "Control Group: Human Nutrition Therapy" based on their desire to use the app. The primary outcome was a change in non-high-density lipoprotein cholesterol (non-HDL-C) levels post-intervention. The secondary outcomes were a change in lipid profile, metabolic indices, and frequency of logins to the app. We assessed 109 participants in two cohorts: 3-month (short-term) and 6-month (long-term). The short-term cohort had 23 intervention and 29 control participants, while the long-term cohort had 35 and 22, respectively. There was a significant improvement in non-HDL-C levels in the short-term intervention group compared to the control group. There was no significant difference in non-HDL-C levels in the long-term groups or at 1 year. There were significant improvements in body weight (BW) in the short-term cohort until 1 year compared within the groups. The retention rate remained high in the short-term cohort (92%) but decreased to 57.8% at 6 months in the long-term cohort. Using an app system to facilitate dietary recordings and guidance for patients at risk of lifestyle-related diseases led to improved lipid levels and BW. These benefits persisted to some extent after 1 year. This app may partially supplement conventional SHG., Competing Interests: In a different study than this one, in which MK is the principal investigator, MK has received free use of the study participants’ applications from Asken inc. Other authors have declared that no competing interests exist., (Copyright: © 2024 Noda et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
- Full Text
- View/download PDF
10. Recapitulating the adenoma-carcinoma sequence by selection of four spontaneous oncogenic mutations in mismatch-repair-deficient human colon organoids.
- Author
-
Mizutani T, Boretto M, Lim S, Drost J, González DM, Oka R, Geurts MH, Begthel H, Korving J, van Es JH, van Boxtel R, and Clevers H
- Subjects
- Humans, Animals, DNA Mismatch Repair, Mice, Colonic Neoplasms genetics, Colonic Neoplasms pathology, Colon pathology, Wnt Signaling Pathway genetics, Tumor Suppressor Protein p53 genetics, Tumor Suppressor Protein p53 metabolism, Carcinogenesis genetics, Organoids pathology, Organoids metabolism, Mutation, Adenoma genetics, Adenoma pathology
- Abstract
Carcinogenesis results from the sequential acquisition of oncogenic mutations that convert normal cells into invasive, metastasizing cancer cells. Colorectal cancer exemplifies this process through its well-described adenoma-carcinoma sequence, modeled previously using clustered regularly interspaced short palindromic repeats (CRISPR) to induce four consecutive mutations in wild-type human gut organoids. Here, we demonstrate that long-term culture of mismatch-repair-deficient organoids allows the selection of spontaneous oncogenic mutations through the sequential withdrawal of Wnt agonists, epidermal growth factor (EGF) agonists and the bone morphogenetic protein (BMP) antagonist Noggin, while TP53 mutations were selected through the addition of Nutlin-3. Thus, organoids sequentially acquired mutations in AXIN1 and AXIN2 (Wnt pathway), TP53, ACVR2A and BMPR2 (BMP pathway) and NRAS (EGF pathway), gaining complete independence from stem cell niche factors. Quadruple-pathway (Wnt, EGF receptor, p53 and BMP) mutant organoids formed solid tumors upon xenotransplantation. This demonstrates that carcinogenesis can be recapitulated in a DNA repair-mutant background through in vitro selection that targets four consecutive cancer pathways., Competing Interests: Competing interests: H.C. is the inventor of several patents related to organoid technology; his full disclosure is given at https://www.uu.nl/staff/JCClevers/ . The other authors declare no competing interests., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
11. DNA mismatch repair controls the mutagenicity of Polymerase ζ-dependent translesion synthesis at methylated guanines.
- Author
-
Tsaalbi-Shtylik A, Mingard C, Räz M, Oka R, Manders F, Van Boxtel R, De Wind N, and Sturla SJ
- Subjects
- Animals, Mice, Mutagenesis, Guanine analogs & derivatives, Guanine metabolism, DNA Damage, DNA Methylation, Fibroblasts metabolism, Fibroblasts drug effects, DNA Replication, DNA metabolism, Translesion DNA Synthesis, DNA Mismatch Repair, DNA-Directed DNA Polymerase metabolism, DNA-Directed DNA Polymerase genetics, Methylnitronitrosoguanidine toxicity
- Abstract
By replicating damaged nucleotides, error-prone DNA translesion synthesis (TLS) enables the completion of replication, albeit at the expense of fidelity. TLS of helix-distorting DNA lesions, that usually have reduced capacity of basepairing, comprises insertion opposite the lesion followed by extension, the latter in particular by polymerase ζ (Pol ζ). However, little is known about involvement of Pol ζ in TLS of non- or poorly-distorting, but miscoding, lesions such as O
6 -methyldeoxyguanosine (O6 -medG). Using purified Pol ζ we describe that the enzyme can misincorporate thymidine opposite O6 -medG and efficiently extend from terminal mismatches, suggesting its involvement in the mutagenicity of O6 -medG. Surprisingly, O6-medG lesions induced by the methylating agent N-methyl-N'-nitro-N-nitrosoguanidine (MNNG) appeared more, rather than less, mutagenic in Pol ζ-deficient mouse embryonic fibroblasts (MEFs) than in wild type MEFs. This suggested that in vivo Pol ζ participates in non-mutagenic TLS of O6 -medG. However, we found that the Pol ζ-dependent misinsertions at O6 -medG lesions are efficiently corrected by DNA mismatch repair (MMR), which masks the error-proneness of Pol ζ. We also found that the MNNG-induced mutational signature is determined by the adduct spectrum, and modulated by MMR. The signature mimicked single base substitution signature 11 in the catalogue of somatic mutations in cancer, associated with treatment with the methylating drug temozolomide. Our results unravel the individual roles of the major contributors to methylating drug-induced mutagenesis. Moreover, these results warrant caution as to the classification of TLS as mutagenic or error-free based on in vitro data or on the analysis of mutations induced in MMR-proficient cells., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF
12. No medication prescription and residential distance from the hospital are important factors associated with nonsurgical weight-loss treatment discontinuance in Japanese patients with high-degree obesity: a retrospective study.
- Author
-
Ohira M, Tsuji S, Watanabe Y, Abe K, Yamaoka S, Nakamura S, Oka R, Tanaka S, Kawagoe N, Yamaguchi T, Nagayama D, Tatsuno I, and Saiki A
- Subjects
- Humans, Retrospective Studies, Male, Female, Japan, Middle Aged, Adult, Obesity therapy, Anti-Obesity Agents therapeutic use, Weight Loss, Aged, Weight Reduction Programs statistics & numerical data, Weight Reduction Programs methods, Patient Dropouts statistics & numerical data, Health Services Accessibility statistics & numerical data, East Asian People, Body Mass Index
- Abstract
Background: Although the percentage of the population with a high degree of obesity (body mass index [BMI] ≥ 35 kg/m
2 ) is low in Japan, the prevalence of obesity-related diseases in patients with high-degree obesity is greater than that in patients with a BMI < 35 kg/m2 . Therefore, treatment for high-degree obesity is important. However, clinical studies have reported that 20-50% of patients with obesity discontinue weight-loss treatment in other countries. The circumstances surrounding antiobesity agents are quite different between Japan and other countries. In this study, we investigated the predictors of treatment discontinuation in Japanese patients with high-degree obesity., Methods: We retrospectively reviewed the medical charts of 271 Japanese patients with high-degree obesity who presented at Toho University Sakura Medical Center for obesity treatment between April 1, 2014, and December 31, 2017. The patients were divided into non-dropout and dropout groups. Patients who discontinued weight-loss treatment within 24 months of the first visit were defined as "dropouts." Multivariate Cox proportional hazards regression analysis and Kaplan-Meier survival analysis were performed to examine the factors predicting treatment withdrawal., Results: Among the 271 patients, 119 (43.9%) discontinued treatment within 24 months of the first visit. The decrease in BMI did not significantly differ between the two groups. No prescription of medication and residential distance from the hospital exceeding 15 km were the top contributors to treatment discontinuation, and the absence of prescription medication was the most important factor. The dropout-free rate was significantly higher in patients with medication prescriptions than in those without and in patients who lived within 15 km of the hospital than in those who lived farther than 15 km from the hospital., Conclusions: No medication prescription and longer residential distance from the hospital were associated with treatment dropout in Japanese patients with high-degree obesity; therefore, the addition of antiobesity medications and telemedicine may be necessary to prevent treatment discontinuation in such patients., (© 2024. The Author(s).)- Published
- 2024
- Full Text
- View/download PDF
13. FOUR-WEEK ORAL ADMINISTRATION OF BALOXAVIR MARBOXIL AS AN ANTI-INFLUENZA VIRUS DRUG SHOWS NO TOXICITY IN CHICKENS.
- Author
-
Miki M, Obara RD, Nishimura K, Shishido T, Ikenaka Y, Oka R, Sato K, Nakayama SMM, Kimura T, Kobayashi A, Aoshima K, Saito K, Hiono T, Isoda N, and Sakoda Y
- Subjects
- Animals, Administration, Oral, Pyridines administration & dosage, Thiepins administration & dosage, Thiepins pharmacology, Male, Influenza in Birds drug therapy, Female, Oxazines, Hydroxybutyrates administration & dosage, Triazines administration & dosage, Chickens, Dibenzothiepins administration & dosage, Antiviral Agents administration & dosage, Antiviral Agents pharmacology, Morpholines administration & dosage, Morpholines pharmacology, Pyridones administration & dosage, Pyridones pharmacology
- Abstract
High pathogenicity avian influenza is an acute zoonotic disease with high mortality in birds caused by a high pathogenicity avian influenza virus (HPAIV). Recently, HPAIV has rapidly spread worldwide and has killed many wild birds, including endangered species. Baloxavir marboxil (BXM), an anti-influenza agent used for humans, was reported to reduce mortality and virus secretion from HPAIV-infected chickens ( Gallus domesticus , order Galliformes) at a dosage of ≥2.5 mg/kg when administered simultaneously with viral challenge. Application of this treatment to endangered birds requires further information on potential avian-specific toxicity caused by repeated exposure to BXM over the long term. To obtain information of potential avian-specific toxicity, a 4-wk oral repeated-dose study of BXM was conducted in chickens ( n = 6 or 7 per group), which are commonly used as laboratory avian species. The study was conducted in reference to the human pharmaceutical guidelines for nonclinical repeated-dose drug toxicity studies to evaluate systemic toxicity and exposure. No adverse changes were observed in any organs examined, and dose proportional increases in systemic exposure to active pharmaceutical ingredients were noted from 12.5 to 62.5 mg/kg per day. BXM showed no toxicity to chickens at doses of up to 62.5 mg/kg per day, at which systemic exposure was approximately 71 times higher than systemic exposure at 2.5 mg/kg, the reported efficacious dosage amount, in HPAIV-infected chickens. These results also suggest that BXM could be considered safe for treating HPAIV-infected endangered birds due to its high safety margin compared with the efficacy dose. The data in this study could contribute to the preservation of endangered birds by using BXM as a means of protecting biodiversity.
- Published
- 2024
- Full Text
- View/download PDF
14. Control of Optical Reflection in Ca 2 MgWO 6 by Co and Mo Doping.
- Author
-
Yamaguchi K, Minagawa K, Oka R, and Masui T
- Abstract
To develop novel inorganic red pigments without harmful elements, we focused on the band structure of Ca
2 (Mg, Co)WO6 and attempted to narrow its bandgap by replacing the W6+ sites in the host structure of Mo6+ . Ca2 Mg1- x Cox W1- y Moy O6 (0.10 ≤ x ≤ 0.30; 0.45 ≤ y ≤ 0.60) samples were synthesized by a sol-gel method using citric acids, and the crystal structure, optical properties, and color of the samples were characterized. The Ca2 Mg1- x Cox W1- y Moy O6 solid solution was successfully formed, which absorbed visible light at wavelengths below 600 nm. In addition, the absorption wavelength shifted to longer wavelengths with increasing Mo6+ content. This is because a new conduction band composed of a Co3d -W5d -Mo4d hybrid orbital was formed by Mo6+ doping to reduce the bandgap energy. Thus, the color of the samples gradually changed from pale orange to dark red, with a hue angle ( h °) of less than 35°. Based on the above results, the optical absorption wavelength of the Ca2 Mg1- x Cox W1- y Moy O6 system can be controlled to change the color by adjusting the bandgap energy.- Published
- 2024
- Full Text
- View/download PDF
15. Performance evaluation of automated scoring for the descriptive similarity response task.
- Author
-
Oka R, Kusumi T, and Utsumi A
- Abstract
We examined whether a machine-learning-based automated scoring system can mimic the human similarity task performance. We trained a bidirectional encoder representations from transformer-model based on the semantic similarity test (SST), which presented participants with a word pair and asked them to write about how the two concepts were similar. In Experiment 1, based on the fivefold cross validation, we showed the model trained on the combination of the responses (N = 1600) and classification criteria (which is the rubric of the SST; N = 616) scored the correct labels with 83% accuracy. In Experiment 2, using the test data obtained from different participants in different timing from Experiment 1, we showed the models trained on the responses alone and the combination of responses and classification criteria scored the correct labels in 80% accuracy. In addition, human-model scoring showed inter-rater reliability of 0.63, which was almost the same as that of human-human scoring (0.67 to 0.72). These results suggest that the machine learning model can reach human-level performance in scoring the Japanese version of the SST., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
16. Utility of Coproporphyrin-I Determination in First-in-Human Study for Early Evaluation of OATP1B Inhibitory Potential Based on Investigation of Ensitrelvir, an Oral SARS-CoV-2 3C-Like Protease Inhibitor.
- Author
-
Watari R, Sawada H, Hashimoto H, Kasai Y, Oka R, Shimizu R, and Matsuzaki T
- Subjects
- Humans, ATP Binding Cassette Transporter, Subfamily G, Member 2, SARS-CoV-2, Protease Inhibitors, Coproporphyrins metabolism, Coproporphyrins pharmacology, Liver-Specific Organic Anion Transporter 1 metabolism, Neoplasm Proteins metabolism, Enzyme Inhibitors, Antiviral Agents pharmacology, Drug Interactions, COVID-19, Anti-Infective Agents, Indazoles, Triazines, Triazoles
- Abstract
Coproporphyrin-I (CP-I) has been investigated as an endogenous biomarker of organic anion transporting polypeptide (OATP) 1B. Here, we determined the CP-I concentrations in a cocktail drug-drug interaction (DDI) study of ensitrelvir to evaluate the OATP1B inhibitory potential because ensitrelvir had increased plasma concentrations of rosuvastatin in this study, raising concerns about breast cancer resistance protein and OATP1B inhibition. Furthermore, CP-I concentrations were compared between active and placebo groups in a first-in-human (FIH) study of ensitrelvir to verify whether the OATP1B inhibitory potential could be estimated at an early drug development stage. In the cocktail DDI study, CP-I did not differ between with/without administration of ensitrelvir, indicating that ensitrelvir has no OATP1B inhibitory effect. Although there were some individual variabilities in CP-I concentrations among the treatment groups in the FIH study, the normalization of CP-I concentrations with pre-dose values minimized these variabilities, suggesting that this normalized method would be helpful for comparing the CP-I from different participants. Finally, we concluded that CP-I concentrations were not affected by ensitrelvir in the FIH study. These results suggested that the CP-I determination in an FIH study and its normalized method can be useful for an early evaluation of the OATP1B-mediated DDI potential in humans., Competing Interests: Declaration of Competing Interest Financial support for the present study was provided by Shionogi & Co., Ltd. All authors are employees of the SHIONOGI Group (Shionogi & Co., Ltd. and Shionogi TechnoAdvance Research & Co., Ltd.)., (Copyright © 2023 American Pharmacists Association. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
17. Hydrolytic activity of yeast oligosaccharyltransferase is enhanced when misfolded proteins accumulate in the endoplasmic reticulum.
- Author
-
Li ST, Hirayama H, Huang C, Matsuda T, Oka R, Yamasaki T, Kohda D, and Suzuki T
- Subjects
- Hydrolysis, Endoplasmic Reticulum, Ubiquitin, Dolichols, Ligases, Oligosaccharides, Polysaccharides, Saccharomyces cerevisiae genetics, Endoplasmic Reticulum-Associated Degradation, Hexosyltransferases, Membrane Proteins
- Abstract
It is known that oligosaccharyltransferase (OST) has hydrolytic activity toward dolichol-linked oligosaccharides (DLO), which results in the formation of free N-glycans (FNGs), i.e. unconjugated oligosaccharides with structural features similar to N-glycans. The functional importance of this hydrolytic reaction, however, remains unknown. In this study, the hydrolytic activity of OST was characterized in yeast. It was shown that the hydrolytic activity of OST is enhanced in ubiquitin ligase mutants that are involved in endoplasmic reticulum-associated degradation. Interestingly, this enhanced hydrolysis activity is completely suppressed in asparagine-linked glycosylation (alg) mutants, bearing mutations related to the biosynthesis of DLO, indicating that the effect of ubiquitin ligase on OST-mediated hydrolysis is context-dependent. The enhanced hydrolysis activity in ubiquitin ligase mutants was also found to be canceled upon treatment of the cells with dithiothreitol, a reagent that potently induces protein unfolding in the endoplasmic reticulum (ER). Our results clearly suggest that the hydrolytic activity of OST is enhanced under conditions in which the formation of unfolded proteins is promoted in the ER in yeast. The possible role of FNGs on protein folding is discussed., (© 2023 Federation of European Biochemical Societies.)
- Published
- 2024
- Full Text
- View/download PDF
18. Body Roundness Index Is Better Correlated with Insulin Sensitivity than Body Shape Index in Young and Middle-Aged Japanese Persons.
- Author
-
Murai N, Saito N, Oka R, Nii S, Nishikawa H, Suzuki A, Kodama E, Iida T, Mikura K, Imai H, Hashizume M, Tadokoro R, Sugisawa C, Iizaka T, Otsuka F, Ishibashi S, and Nagasaka S
- Subjects
- Male, Middle Aged, Humans, Adult, Body Mass Index, Obesity diagnosis, Risk Factors, Japan, Anthropometry, Waist Circumference, Insulin Resistance, Glucose Intolerance diagnosis
- Abstract
Aims: The present study aimed to clarify the relationships between novel and traditional anthropometric indices and insulin sensitivity (SI) in young and middle-aged Japanese persons with normal glucose tolerance (NGT), and middle-aged Japanese persons with NGT and glucose intolerance. Methods: Plasma glucose and insulin levels were measured in 1270 young (age <40 years) and 2153 middle-aged persons with NGT ( n = 1531) and glucose intolerance ( n = 622) during a 75-g oral glucose tolerance test. Height (Ht), weight, and waist circumference (WC) were measured. The body mass index (BMI), WC, and the WC/Ht ratio were used as traditional anthropometric indices. A body shape index (ABSI) and the body roundness index (BRI) were calculated as novel indices. Indices of SI (Matsuda index and 1/homeostasis model assessment of insulin resistance) were calculated and compared with anthropometric indices. Results: The ABSI showed a weak correlation with SI indices in all groups. The BRI showed almost the same correlation with SI indices as the BMI, WC, and WC/Ht in all groups. The inverse correlation between each of the anthropometric indices other than ABSI and SI indices was weak in young persons, at 0.16-0.27 (Spearman's ρ values), but strong in middle-aged persons, at 0.38-1.00. On receiver-operating characteristic (ROC) curve analysis for detection of insulin resistance, the ABSI had a lower area under the ROC curve (AUC) than the other anthropometric indices, and the BRI and the WC/Ht ratio showed similar AUCs. The AUCs for the BRI and WC/Ht ratio were the highest in middle-aged men with NGT and glucose intolerance. Conclusions: The BRI, not the ABSI, was better correlated with SI in young and middle-aged Japanese persons. The BRI and WC/Ht ratio were comparable in their correlations with SI and the detection of insulin resistance in the participants of the present study.
- Published
- 2024
- Full Text
- View/download PDF
19. Progress in Oligometastatic Prostate Cancer: Emerging Imaging Innovations and Therapeutic Approaches.
- Author
-
Oka R, Utsumi T, Noro T, Suzuki Y, Iijima S, Sugizaki Y, Somoto T, Kato S, Endo T, Kamiya N, and Suzuki H
- Abstract
Prostate cancer (PCa) exhibits a spectrum of heterogeneity, from indolent to highly aggressive forms, with approximately 10-20% of patients experiencing metastatic PCa. Oligometastatic PCa, characterized by a limited number of metastatic lesions in specific anatomical locations, has gained attention due to advanced imaging modalities. Although patients with metastatic PCa typically receive systemic therapy, personalized treatment approaches for oligometastatic PCa are emerging, including surgical and radiotherapeutic interventions. This comprehensive review explores the latest developments in the field of oligometastatic PCa, including its biological mechanisms, advanced imaging techniques, and relevant clinical studies. Oligometastatic PCa is distinct from widespread metastases and presents challenges in patient classification. Imaging plays a crucial role in identifying and characterizing oligometastatic lesions, with new techniques such as prostate-specific membrane antigen positron emission tomography demonstrating a remarkable efficacy. The management strategies encompass cytoreductive surgery, radiotherapy targeting the primary tumor, and metastasis-directed therapy for recurrent lesions. Ongoing clinical trials are evaluating the effectiveness of these approaches. Oligometastatic PCa occupies a unique position between locally advanced and high-volume metastatic diseases. While a universally accepted definition and standardized diagnostic criteria are still evolving, emerging imaging technologies and therapeutic strategies hold promise for improving the patient outcomes in this intermediate stage of PCa.
- Published
- 2024
- Full Text
- View/download PDF
20. [Changes in the residence of elderly people after hospitalization in the Integrated Community Care Ward].
- Author
-
Kondo T, Kawashima K, Nakamichi J, Nakayama E, Kubota M, Maeda I, Nakashima T, Obata N, Fukushima M, and Oka R
- Subjects
- Humans, Aged, Aged, 80 and over, Male, Female, Retrospective Studies, Patient Discharge, Activities of Daily Living, Community Health Services, Hospitalization
- Abstract
Aim: When elderly people return to their daily lives after inpatient treatment, they may be offered a chance to change the residence to which they are accustomed. The present study clarified the changes in the residence of elderly patients through an Integrated Community Care Ward (ICCW)., Subjects and Methods: Patients were admitted to and discharged from the ICCW (53 beds) of Hospital A, located in a city with a population of 30,000 and an aging rate of 37%, for 2 years from April 1, 2018, to March 31, 2020. Patients ≥65 years old were included in the study. We conducted a retrospective survey of information recorded in the electronic medical record system and collected information on activities of daily living, medical procedures at the time of discharge, residence before and after hospitalization, and intentions regarding discharge destination within seven days of hospitalization., Results: Of the 735 patients ≥65 years old who were admitted to the ICCW, 608 were included, excluding 127 patients admitted for scheduled surgeries. The average age was 82.9 years old, with 52% being over 85 years and 26% being over 90 years old. Of the 465 people hospitalized from home, 64% were discharged, 23% changed to a facility or hospital, and the remaining 13% died. More than 80% of the 143 discharged from facilities or hospitals returned to facilities, but 36 (25%) were discharged to a different facility from before admission. Of the 404 patients who were admitted from home and discharged alive, independence in eating, independence in movement, and having family members living with them were independently related factors for achieving discharge home. Regarding the intended discharge destination within 7 days after hospitalization, of the 246 hospitalized patients who wished to be discharged home, 56 said they wanted to be discharged to a facility or hospital, showing a discrepancy of 23%., Conclusions: Many elderly people changed their residences after admission to the ICCW. While coordinating disagreements within families as well as navigating medical and nursing care constraints, dialogue across multiple professions should be continued to help elderly patients live their own lives.
- Published
- 2024
- Full Text
- View/download PDF
21. Eu 3+ Site Distribution and Local Distortion of Photoluminescent Ca 3 WO 6 :(Eu 3+ , K + ) Double Perovskites as High-Color-Purity Red Phosphors.
- Author
-
Otsuka T, Oka R, and Hayakawa T
- Abstract
In this study, Eu
3+ and K+ co-doped Ca3 WO6 double perovskite, a high-color-purity red phosphor, is quantitatively investigated using synchrotron X-ray diffraction Rietveld refinement, energy dispersive X-ray spectroscopy, and high-resolution PL spectroscopy. The Eu3+ fluorescence line-narrowing (FLN) results, used to estimate the Eu3+ occupation at given sites (so-called A and B sites) in the host crystal (A2 BMO6 ; A, B = Ca; M = W), reveal that the Eu3+ ions have a twin distribution in both the A and B sites with high asymmetry ratios of ΛA = 9.7 and ΛB = 10.7, respectively. More interestingly, at lower Eu3+ doping levels, the ions are predominantly located at the B sites (≈75%), indicating that the high color purity of Ca3 WO6 :(Eu3+ , K+ ) is mainly caused by the high asymmetry ratios of the Eu3+ sites. Rietveld refinement combined with the FLN technique provides more reliable results for increasing the Eu3+ substitution at the A site with Eu3+ and K+ doping concentrations, which lower the lattice energy of Ca3 WO6 :(Eu3+ , K+ ). The structural distortions owing to K+ co-doping in terms of the quadratic elongation and bond-angle variance exhibit good correlations with the Ca(Eu)O12 A-site cuboctahedra and Ca(Eu)O6 B-site octahedra, partially accounting for the higher Λ values., (© 2023 The Authors. Advanced Science published by Wiley-VCH GmbH.)- Published
- 2023
- Full Text
- View/download PDF
22. Laparoscopic adrenalectomy for adrenal tumors with endocrine activity: Perioperative management pathways for reduced complications and improved outcomes.
- Author
-
Utsumi T, Iijima S, Sugizaki Y, Mori T, Somoto T, Kato S, Oka R, Endo T, Kamiya N, and Suzuki H
- Subjects
- Humans, Adrenalectomy adverse effects, Hydrocortisone, Retrospective Studies, Cushing Syndrome etiology, Cushing Syndrome surgery, Pheochromocytoma surgery, Adrenal Gland Neoplasms complications, Paraganglioma surgery, Paraganglioma complications, Hypertension etiology, Hyperaldosteronism surgery, Hyperaldosteronism complications, Laparoscopy adverse effects
- Abstract
The major adrenal tumors with endocrine activity are primary aldosteronism, Cushing's syndrome/mild autonomous cortisol secretion, and pheochromocytoma/paraganglioma. Excessive aldosterone secretion in primary aldosteronism causes cardiovascular, renal, and other organ damage in addition to hypertension and hypokalemia. Cortisol hypersecretion in Cushing's syndrome/mild autonomous cortisol secretion causes obesity, hypertension, impaired glucose tolerance, and cardiometabolic syndrome. Massive secretion of catecholamines in pheochromocytoma/paraganglioma causes hypertension and cerebrocardiovascular disease due to rapid blood pressure fluctuation. Moreover, pheochromocytoma multi-system crisis is a feared and possibly fatal presentation of pheochromocytoma/paraganglioma. Thus, adrenal tumors with endocrine activity are considered an indication for adrenalectomy, and perioperative management is very important. They have a risk of perioperative complications, either due to direct hemodynamic effects of the hormone hypersecretion or due to hormone-related comorbidities. In the last decades, deliberate preoperative evaluation and advanced perioperative management have significantly reduced complications and improved outcomes. Furthermore, improvements in anesthesia and surgical techniques with the feasibility of laparoscopic adrenalectomy have contributed to reduced morbidity and mortality. However, there are still several challenges to be considered in the perioperative care of these patients. There are very few data available prospectively to guide clinical management, due to the rarity of adrenal tumors with endocrine activity. Therefore, most guidelines are based on retrospective data analyses or small case series. In this review, the latest knowledge is summarized, and practical pathways to reduce perioperative complications and improve outcomes in adrenal tumors with endocrine activity are presented., (© 2023 The Japanese Urological Association.)
- Published
- 2023
- Full Text
- View/download PDF
23. Color Controllable Inorganic Pigments with Ce 3+ as a Color Source.
- Author
-
Yamaguchi K, Shobu Y, Oka R, and Masui T
- Abstract
The Ba
2 RE1- x Cex TaO6 (RE = La, Gd, Y; 0 ≤ x ≤ 1) pigments were synthesized by a conventional solid-state reaction method to develop environmentally friendly reddish inorganic pigments. The host was the double-perovskite-type Ba2 RETaO6 (RE: rare-earth elements), and the color source was Ce3+ . All Ba2 RE1- x Cex TaO6 samples were obtained in a single-phase form as solid solutions. Rietveld refinement analysis of the Ba2 RETaO6 (RE = La, Ce, Gd, and Y) samples revealed that the average bond length between RE3+ and O depends on the ionic radius of RE3+ , and the shorter the RE-O length, the stronger the crystal field surrounding Ce3+ . A photon energy at the maximum 4f-5d absorption of Ce3+ depended on the weighted average ionic radius ( rRE ) at the RE3+ site (i.e., the crystal field energy around the Ce3+ ions). In response to this phenomenon, the sample color was changed in order to orange, red, pink, and violet with a decrease in the rRE value, and a hue angle ( h °) was roughly linearly related to that. For validation of the tendency, we demonstrated the synthesis and characterization of Ba2 La0.5- y Yy Ce0.5 TaO6 to obtain a more reddish color. As we exactly expected, a more reddish color was obtained while maintaining a high C value. Furthermore, the h ° values for y = 0.1 and 0.2 were in good agreement with our estimation. In light of the above results, by controlling the intensity of the crystal field surrounding Ce3+ and/or the concentration of Ce3+ , the optical absorption wavelength and absorption intensity of the Ba2 RE1- x Cex TaO6 system can be changed to adjust the color.- Published
- 2023
- Full Text
- View/download PDF
24. Local Structural Investigation of Near-Infrared-Reflective Black Ca 2 (Mn,Ti)O 4 Pigments Using Synchrotron Radiation X-Ray and Density Functional Theory Calculations.
- Author
-
Oka R and Hayakawa T
- Abstract
Layered perovskite black Ca
2 (Mn,Ti)O4 ceramics were studied by using synchrotron radiation X-rays (SRX) and density functional theory (DFT) calculations to investigate the valence states of the cations, average/local structures, and electronic states. The crystallographic data were obtained by the Rietveld refinement of the obtained synchrotron radiation X-ray powder diffraction patterns. X-ray absorption near edge structure (XANES) spectroscopy measurements revealed that the ratios of Mn4+ and Ti4+ were about 82 and 95%, respectively, in all samples, and the Mn/Ti valences were not affected by the introduction of Ti4+ . In addition, two pre-edge peaks were observed in the Mn-XANES spectra, but their peak positions and intensities were affected by doping with Ti4+ , indicating that the symmetry of the MnO6 octahedra was changed. A comparison of the atomic distances estimated from the Rietveld analysis and radial distribution function (RDF) revealed that there were large differences between the M-M distances (M = Mn, Ti). Therefore, XANES simulations were carried out to obtain models of the local structure. The experimental and theoretical data indicate that the Mn atoms were configured in a zigzagging arrangement, and the distortion of the MnO6 octahedra increased with the increase in the degree of Ti4+ doping. The origin of the changes to the pre-edge peaks was not only the crystal field strength around Mn but also the symmetry of the MnO6 octahedra.- Published
- 2023
- Full Text
- View/download PDF
25. Evaluation of Drug-Drug Interactions of Ensitrelvir, a SARS-CoV-2 3CL Protease Inhibitor, With Transporter Substrates Based on In Vitro and Clinical Studies.
- Author
-
Shimizu R, Matsuzaki T, Oka R, Sonoyama T, Fukuhara T, Kuwata A, Matsuo Y, and Kubota R
- Subjects
- Humans, ATP Binding Cassette Transporter, Subfamily G, Member 2 metabolism, SARS-CoV-2, Rosuvastatin Calcium pharmacokinetics, Protease Inhibitors, Neoplasm Proteins metabolism, Membrane Transport Proteins metabolism, Drug Interactions, ATP Binding Cassette Transporter, Subfamily B, Member 1 metabolism, Digoxin pharmacokinetics, Enzyme Inhibitors, Organic Cation Transporter 1, Biological Transport, Solute Carrier Organic Anion Transporter Family Member 1B3 metabolism, COVID-19, Organic Anion Transporters, Metformin pharmacokinetics
- Abstract
Drug-drug interaction potentials of ensitrelvir, a novel oral inhibitor of 3C-like protease of severe acute respiratory syndrome coronavirus 2, for drug transporters were evaluated by in vitro and clinical studies. The target drug transporters assessed were P-glycoprotein (P-gp), breast cancer resistance protein (BCRP), organic anion transporting polypeptide (OATP) 1B1, OATP1B3, organic anion transporter (OAT) 1, OAT3, organic cation transporter (OCT) 1, OCT2, and multidrug and toxin extrusion 1 and 2K. In vitro study revealed that ensitrelvir is a substrate for P-gp and BCRP and inhibits P-gp, BCRP, OATP1B1, OATP1B3, OCT1, and OAT3. Based on these results, a clinical drug-drug interaction study to evaluate the effect of ensitrelvir on the pharmacokinetics of P-gp, BCRP, OATP1B1, OATP1B3, and OCT1 substrates was conducted with a cocktail approach using digoxin (P-gp substrate), rosuvastatin (BCRP, OATP1B1, and OATP1B3 substrate), and metformin (OCT1 substrate). The cocktail was administered first, and after the washout period, the cocktail was coadministered with 500 mg of ensitrelvir. No treatment-emergent adverse events were observed. Pharmacokinetic analyses demonstrated that the ratios (90% confidence intervals) of "cocktail with ensitrelvir" to "cocktail without ensitrelvir" for maximum plasma concentration and area under the plasma concentration-time curve were, respectively, 2.17 (1.72-2.73) and 1.31 (1.13-1.52) for digoxin, 1.97 (1.73-2.25) and 1.65 (1.47-1.84) for rosuvastatin, and 1.03 (0.91-1.16) and 1.02 (0.94-1.11) for metformin. The results indicate that the exposure levels of digoxin and rosuvastatin increased when coadministered with ensitrelvir, but those of metformin were not changed. In conclusion, ensitrelvir has an impact on the exposure levels of P-gp, BCRP, OATP1B1, and OATP1B3 substrates., (© 2023 The Authors. The Journal of Clinical Pharmacology published by Wiley Periodicals LLC on behalf of American College of Clinical Pharmacology.)
- Published
- 2023
- Full Text
- View/download PDF
26. Investigation on the Usefulness of Photodynamic Diagnosis-assisted Targeted Bladder Biopsy: Japanese Real-world Study.
- Author
-
Arai T, Sazuka T, Oka R, Tsukamoto R, Sato H, Goto Y, Imamura Y, Sakamoto S, and Ichikawa T
- Subjects
- Humans, East Asian People, Aminolevulinic Acid, Biopsy, Photosensitizing Agents, Urinary Bladder pathology, Urinary Bladder Neoplasms pathology
- Abstract
Background/aim: Photodynamic diagnosis (PDD)-assisted transurethral resection of a bladder tumor (PDD-TURBT) in a patient receiving 5-aminolevulinic acid improved the detection of micro- and flat lesions of the bladder. This study used real-world data in Japan to examine the diagnostic accuracy of PDD-assisted targeted biopsies and white-light (WL) random biopsies and reevaluated the necessity of random biopsies., Patients and Methods: A total of 133 patients diagnosed with bladder cancer who underwent TURBT from April 2020 to March 2022 were included in the study. Biopsy specimens obtained from 407 flat lesions or normal-like lesions, excluding biopsies from elevated lesions and TUR specimens, were used to analyze diagnostic accuracy in PDD and WL findings., Results: The respective sensitivities, specificities, and negative predictive values of PDD vs. WL findings were 81.4% vs. 54.0% (p=0.0039), 70.4% vs. 81.4% (p=0.0012), and 96.4% vs. 90.6% (p=0.0144), indicating that PDD was useful for a diagnosis of exclusion. Combining the PDD and WL findings improved the detection of malignant flat lesions. Ten (PDD-positive and WL-negative) specimens from 9 patients were diagnosed as malignant. The results of PDD-assisted targeted biopsy provided an accurate assessment of the risk classification for recurrence and progression of non-muscle invasive bladder cancer (NMIBC) as defined by the Japanese Urological Association (JUA) guidelines., Conclusion: For NMIBC treatment, a more accurate diagnosis is important for postoperative treatment decisions. PDD-assisted targeted biopsy may be necessary and sufficient for diagnosis of flat lesions in patients with bladder cancer for treatment decision making based on JUA risk classification., (Copyright © 2023 International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
27. Crystallization of heavy fermions via epitaxial strain in spinel LiV 2 O 4 thin film.
- Author
-
Niemann U, Wu YM, Oka R, Hirai D, Wang Y, Suyolcu YE, Kim M, van Aken PA, and Takagi H
- Abstract
The mixed-valent spinel LiV
2 O4 is known as the first oxide heavy-fermion system. There is a general consensus that a subtle interplay of charge, spin, and orbital degrees of freedom of correlated electrons plays a crucial role in the enhancement of quasi-particle mass, but the specific mechanism has remained yet elusive. A charge-ordering (CO) instability of V3+ and V4+ ions that is geometrically frustrated by the V pyrochlore sublattice from forming a long-range CO down to T = 0 K has been proposed as a prime candidate for the mechanism. Here, we uncover the hidden CO instability by applying epitaxial strain on single-crystalline LiV2 O4 thin films. We find a crystallization of heavy fermions in a LiV2 O4 film on MgO, where a charge-ordered insulator comprising of a stack of V3+ and V4+ layers along [001], the historical Verwey-type ordering, is stabilized by the in-plane tensile and out-of-plane compressive strains from the substrate. Our discovery of the [001] Verwey-type CO, together with previous realizations of a distinct [111] CO, evidence the close proximity of the heavy-fermion state to degenerate CO states mirroring the geometrical frustration of the V pyrochlore lattice, which supports the CO instability scenario for the mechanism behind the heavy-fermion formation.- Published
- 2023
- Full Text
- View/download PDF
28. In Vivo Antiviral Activity of Baloxavir against PA/I38T-Substituted Influenza A Viruses at Clinically Relevant Doses.
- Author
-
Kuroda T, Fukao K, Yoshida S, Oka R, Baba K, Ando Y, Taniguchi K, Noshi T, and Shishido T
- Subjects
- Humans, Animals, Mice, Antiviral Agents pharmacology, Antiviral Agents therapeutic use, Oseltamivir pharmacology, Oseltamivir therapeutic use, Oxazines pharmacology, Pyridines pharmacology, Influenza A Virus, H3N2 Subtype, Drug Resistance, Viral, Nucleotidyltransferases, Phosphates, Influenza A virus, Influenza A Virus, H1N1 Subtype, Thiepins pharmacology, Thiepins therapeutic use, Influenza, Human
- Abstract
Although the prevalence of polymerase acidic (PA)/I38T strains of influenza virus with reduced susceptibility to baloxavir acid is low, there is a possibility of emergence under selective pressure. Furthermore, the virus may be transmitted between humans. We investigated the in vivo efficacy of baloxavir acid and oseltamivir phosphate against influenza A subtypes H1N1, H1N1pdm09, and H3N2, with PA/I38T substitution, at doses simulating human plasma concentrations. A pharmacokinetic/pharmacodynamic analysis was performed to strengthen the validity of the findings and the applicability in a clinical setting. Although the antiviral effect of baloxavir acid was attenuated in mice infected with PA/I38T-substituted viral strains compared with the wild type (WT), baloxavir acid significantly reduced virus titers at higher-but clinically relevant-doses. The virus titer reduction with baloxavir acid (30 mg/kg subcutaneous single dose) was comparable to that of oseltamivir phosphate (5 mg/kg orally twice daily) against H1N1 and H1N1pdm09 PA/I38T strains in mice, as well as the H3N2 PA/I38T strain in hamsters. Baloxavir acid demonstrated an antiviral effect against PA/I38T-substituted strains, at day 6, with no further viral rebound. In conclusion, baloxavir acid demonstrated dose-dependent antiviral effects comparable to that of oseltamivir phosphate, even though the degree of lung virus titer reduction was diminished in animal models infected with PA/I38T-substituted strains.
- Published
- 2023
- Full Text
- View/download PDF
29. Efficacy comparison of 3CL protease inhibitors ensitrelvir and nirmatrelvir against SARS-CoV-2 in vitro and in vivo.
- Author
-
Kuroda T, Nobori H, Fukao K, Baba K, Matsumoto K, Yoshida S, Tanaka Y, Watari R, Oka R, Kasai Y, Inoue K, Kawashima S, Shimba A, Hayasaki-Kajiwara Y, Tanimura M, Zhang Q, Tachibana Y, Kato T, and Shishido T
- Subjects
- Cricetinae, Animals, Humans, Protease Inhibitors therapeutic use, Antiviral Agents pharmacology, Antiviral Agents therapeutic use, SARS-CoV-2, COVID-19
- Abstract
Objectives: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has become established in the human population, making the need to develop safe and effective treatments critical. We have developed the small-molecule antiviral ensitrelvir, which targets the 3C-like (3CL) protease of SARS-CoV-2. This study evaluated the in vitro and in vivo efficacy of ensitrelvir compared with that of another SARS-CoV-2 3CL PI, nirmatrelvir., Methods: Cultured cells, BALB/cAJcl mice and Syrian hamsters were infected with various SARS-CoV-2 strains, including the ancestral strain WK-521, mouse-adapted SARS-CoV-2 (MA-P10) strain, Delta strain and Omicron strain. Ensitrelvir efficacy was compared with that of nirmatrelvir. Effective concentrations were determined in vitro based on virus-induced cytopathic effects, viral titres and RNA levels. Lung viral titres, nasal turbinate titres, body-weight changes, and animal survival were also monitored., Results: Ensitrelvir and nirmatrelvir showed comparable antiviral activity in multiple cell lines. Both ensitrelvir and nirmatrelvir reduced virus levels in the lungs of mice and the nasal turbinates and lungs of hamsters. However, ensitrelvir demonstrated comparable or better in vivo efficacy than that of nirmatrelvir when present at similar or slightly lower unbound-drug plasma concentrations., Conclusions: Direct in vitro and in vivo efficacy comparisons of 3CL PIs revealed that ensitrelvir demonstrated comparable in vitro efficacy to that of nirmatrelvir in cell culture and exhibited equal to or greater in vivo efficacy in terms of unbound-drug plasma concentration in both animal models evaluated. The results suggest that ensitrelvir may become an important resource for treating individuals infected with SARS-CoV-2., (© The Author(s) 2023. Published by Oxford University Press on behalf of British Society for Antimicrobial Chemotherapy.)
- Published
- 2023
- Full Text
- View/download PDF
30. The preoperative M2BPGi score predicts operative difficulty and the incidence of postoperative complications in laparoscopic liver resection.
- Author
-
Fuji T, Kojima T, Kajioka H, Sakamoto M, Oka R, Katayama T, Narahara Y, and Niguma T
- Subjects
- Humans, Incidence, Retrospective Studies, Hepatectomy, Liver Cirrhosis surgery, Postoperative Complications surgery, Length of Stay, Liver Neoplasms surgery, Laparoscopy, Carcinoma, Hepatocellular surgery
- Abstract
Background: Liver fibrosis or cirrhosis frequently makes parenchymal transection more difficult, but the difficulty score of laparoscopic liver resection (LLR), including the IWATE criteria, does not include a factor related to liver fibrosis. Therefore, this study aimed to evaluate M2BPGi as a predictor of the difficulty of parenchymal transection and the incidence of postoperative complications in LLR., Methods: Data from 54 patients who underwent laparoscopic partial liver resection (LLR-P) and 24 patients who underwent laparoscopic anatomical liver resection between 2017 and 2019 in our institution were retrospectively analyzed. All cases were classified according to M2BPGi scores, and reserve liver function, intraoperative blood loss, and postoperative complications were compared among these groups., Results: Sixteen cases (29.6%) were M2BPGi negative (cut-off index < 1.0), 25 cases (46.3%) were 1+ (1.0 ≤ cut-off index < 3.0), and 13 cases (24.1%) were 2+ (cut-off index ≥ 3.0). M2BPGi-positive cases had significantly worse hepatic reserve function (K-ICG: 0.16 vs 0.14 vs 0.08, p < 0.0001). Intraoperative bleeding was significantly greater in M2BPGi-positive cases [50 ml vs 150 ml vs 200 ml, M2BPGi (-) or (1+) vs M2BPGi (2+), p = 0.045]. Postoperative complications (Clavien-Dindo ≥ II) were significantly more frequent in M2BPGi-positive cases [0% vs 4% vs 33%, M2BPGi (-) or (1+) vs M2BPGi (2+), p = 0.001]., Conclusion: M2BPGi could predict surgical difficulty and complications in LLR-P. In particular, it might be better not to select M2BPGi (2+) cases as teaching cases because of the massive bleeding during parenchymal transection., (© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2023
- Full Text
- View/download PDF
31. Deep-learning reconstruction to improve image quality of myocardial dynamic CT perfusion: comparison with hybrid iterative reconstruction.
- Author
-
Takafuji M, Kitagawa K, Mizutani S, Oka R, Kisou R, Sakaguchi S, Ichikawa K, Izumi D, and Sakuma H
- Subjects
- Algorithms, Humans, Image Processing, Computer-Assisted methods, Perfusion, Radiation Dosage, Radiographic Image Interpretation, Computer-Assisted methods, Tomography, X-Ray Computed methods, Deep Learning
- Published
- 2022
- Full Text
- View/download PDF
32. Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms.
- Author
-
Bertrums EJM, Rosendahl Huber AKM, de Kanter JK, Brandsma AM, van Leeuwen AJCN, Verheul M, van den Heuvel-Eibrink MM, Oka R, van Roosmalen MJ, de Groot-Kruseman HA, Zwaan CM, Goemans BF, and van Boxtel R
- Subjects
- Child, Hematopoietic Stem Cells pathology, Humans, Multiple Myeloma chemically induced, Multiple Myeloma genetics, Mutation, Neoplasms complications, Neoplasms drug therapy, Neoplasms genetics, Phylogeny, Antineoplastic Agents adverse effects, Antineoplastic Agents therapeutic use, Neoplasms, Second Primary chemically induced, Neoplasms, Second Primary genetics, Neoplasms, Second Primary pathology
- Abstract
Childhood cancer survivors are confronted with various chronic health conditions like therapy-related malignancies. However, it is unclear how exposure to chemotherapy contributes to the mutation burden and clonal composition of healthy tissues early in life. Here, we studied mutation accumulation in hematopoietic stem and progenitor cells (HSPC) before and after cancer treatment of 24 children. Of these children, 19 developed therapy-related myeloid neoplasms (t-MN). Posttreatment HSPCs had an average mutation burden increase comparable to what treatment-naïve cells accumulate during 16 years of life, with excesses up to 80 years. In most children, these additional mutations were induced by clock-like processes, which are also active during healthy aging. Other patients harbored mutations that could be directly attributed to treatments like platinum-based drugs and thiopurines. Using phylogenetic inference, we demonstrate that most t-MN in children originate after the start of treatment and that leukemic clones become dominant during or directly after chemotherapy exposure., Significance: Our study shows that chemotherapy increases the mutation burden of normal blood cells in cancer survivors. Only few drugs damage the DNA directly, whereas in most patients, chemotherapy-induced mutations are caused by processes similar to those present during normal aging. This article is highlighted in the In This Issue feature, p. 1825., (©2022 The Authors; Published by the American Association for Cancer Research.)
- Published
- 2022
- Full Text
- View/download PDF
33. The number of topic-attributed features affects speakers' metaphor production.
- Author
-
Oka R, Yanaoka K, and Kusumi T
- Subjects
- Female, Humans, Language, Comprehension physiology, Metaphor
- Abstract
This study examined whether or not the number of topic-attributed features affects the speakers' use of metaphor production rather than literal expressions. Across two experiments, participants were asked to produce an expression that best paraphrased a given sentence. The number of features attributed to each topic was manipulated: one feature ("Her sarcasm hurts people"), two features ("Her sarcasm hurts people and is sharp"), and three features ("Her sarcasm hurts people, is sharp, and is piercing to the heart"). Participants' responses were classified into nominal metaphor/simile, literal, other metaphor/simile, and others. In both Experiment 1 and Experiment 2, participants' nominal metaphor responses (e.g., "Her sarcasm is a knife") increased with the number of topic-vehicles that shared significant features in a given sentence. These results suggest that the number of topic-attributed features affects participants' preference for the use of metaphorical expressions. We discussed the results based on the compactness hypothesis (Ortony, Educational Theory, 25: 45-53, 1975) of metaphor production., (© 2022. The Psychonomic Society, Inc.)
- Published
- 2022
- Full Text
- View/download PDF
34. Hepatic Steatosis and High-Normal Fasting Glucose as Risk Factors for Incident Prediabetes.
- Author
-
Aizawa T, Nakasone Y, Murai N, Oka R, Nagasaka S, Yamashita K, Sakuma T, and Kiyosawa K
- Abstract
Context: The role of hepatic steatosis (HS) in the initial stages of developing type 2 diabetes remains unclear., Objective: We aimed to clarify the impact of HS indexed by Fatty Liver Index (FLI) and high-normal fasting plasma glucose (FPG) as risk factors for incident prediabetes in a nonobese cohort., Methods: Data from 1125 participants with ADA-defined normal glucose metabolism (median age 52 years; BMI 23.1 kg/m
2 ) were used for retrospective analysis. In the entire population, correlation between normal FPG and FLI was evaluated by multiple regression adjusted for age and sex. Follow-up data from 599 participants in whom 75-g OGTT was repeated 3.7 years later showed that 169 developed prediabetes. This was analyzed by the multivariate Cox proportional hazards model., Results: In the entire population, FLI was positively correlated with FPG ( P < 0.01): mean FLI increased from 15.8 at FPG 4.2 mmol/L to 31.6 at FPG 5.5 mmol/L. Analysis of the 599 participants (2061 person-years) by Cox model, adjusted for sex, age, family history of diabetes, ISIMATSUDA , and Stumvoll-1, clarified an increased risk of prediabetes with high-normal FPG and FLI. Risk was increased 2.2 times with FLI ≥ 16.5 vs FLI < 16.5, P < 0.001, and increased 2.1 times in participants with FPG ≥ 5.3 mmol/L, P < 0.001. Cutoff values (unadjusted) were obtained by ROC at the point of the largest Youden's index using the entire range of the variables., Conclusion: Even among nonobese individuals, HS indexed by FLI and a high-normal FPG (≥ 5.3 mmol/L) are risk factors for prediabetes, independently from insulin., (© The Author(s) 2022. Published by Oxford University Press on behalf of the Endocrine Society.)- Published
- 2022
- Full Text
- View/download PDF
35. Novel near-infrared reflective black inorganic pigment based on cerium vanadate.
- Author
-
Moriomoto T, Oka R, Minagawa K, and Masui T
- Abstract
Gd
3+ -doped cerium vanadates, Ce1- x Gdx VO4 (0 ≤ x ≤ 0.30), were synthesized as near-infrared (NIR) reflective black pigments by a conventional solid-state reaction method. Crystal structure, particle size, optical properties, and color of the samples were characterized. The Ce1- x Gdx VO4 (0 ≤ x ≤ 0.30) samples were obtained in a single-phase form and the lattice volume decreased with increasing Gd3+ concentration. Optical absorption below 630 nm was observed in all samples, which corresponded to the charge-transfer transition between Ce4f and V3d orbitals. The absorption spectrum of Ce1- x Gdx VO4 was shifted to the longer wavelength side as the Gd3+ content increased, because of the increase in the crystal field around V5+ due to the lattice shrinkage. As a result, the sample color gradually changed from dark brown to black with increasing Gd3+ content. Among the samples synthesized in this study, Ce0.80 Gd0.20 VO4 absorbed visible light with wavelengths shorter than 650 nm and exhibited the darkest color. Furthermore, this black pigment showed a sufficient NIR reflectance value ( R = 66.3%), which was higher than those of the commercially available products ( R < 50%)., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2022
- Full Text
- View/download PDF
36. Raman Spectroscopic Investigation and Electronic State Calculation for Ca 2 (Mn,Ti)O 4 Black Pigments with High Near-Infrared (NIR) Reflectivity.
- Author
-
Oka R and Hayakawa T
- Abstract
Layered perovskite A
2 B O4 compounds were studied by a combination of X-ray powder diffraction (XRD) analysis, Raman spectroscopy, and density functional theory (DFT) calculations. Ti4+ -doped Ca2 MnO4 ceramics with high near-infrared (NIR) reflectivity were selected as a test case. After elucidating their crystal structures ( I 41 / acd ) by XRD analysis, Raman spectroscopy was applied. Raman peaks were observed at approximately 178, 290, 330, 463, 500, and 562 cm-1 , which were confirmed by DFT calculations, and were in modes identical to those reported for Sr2 IrO4 in the same space group. An additional peak was observed at approximately 780 cm-1 for the Ti4+ -doped samples, indicating that a silent A2g mode was activated by doping with Ti4+ , similar to the A1g (breathing) mode found in B -site-substituted simple perovskite and B -site-ordered double perovskite structures. The XRD patterns of the doped samples did not exhibit any additional X-ray reflections, except for the pattern typical of nondoped Ca2 MnO4 . Thus, these results were attributed to the presence of the Ti-Ti correlation with a certain distance. The calculated band gap energies of Ca2 MnO4 and Ca2 Mn0.75 Ti0.25 O4 were approximately 1.8 eV, which was in reasonable agreement with the experimental value. The DFT calculations also revealed that one of the factors contributing to the enhancement of NIR reflectivity upon introduction of Ti4+ ions is the reduced density of states (DOS) near the Fermi level.- Published
- 2022
- Full Text
- View/download PDF
37. Improvement of ixekizumab-related interstitial pneumonia following its discontinuation in a patient with psoriatic arthritis
- Author
-
Oka R, Inoue T, Hashimoto A, Tsuruta N, Nagase K, and Sugita K
- Subjects
- Antibodies, Monoclonal, Humanized adverse effects, Humans, Treatment Outcome, Arthritis, Psoriatic drug therapy, Dermatologic Agents adverse effects, Lung Diseases, Interstitial chemically induced, Lung Diseases, Interstitial drug therapy
- Published
- 2022
- Full Text
- View/download PDF
38. Association of Plasma Xanthine Oxidoreductase with Arterial Stiffness in Type 2 Diabetes with Liver Dysfunction.
- Author
-
Ohira M, Tanaka S, Watanabe Y, Nakamura S, Oka R, Yamaguchi T, Ban N, Saiki A, Ishihara N, Murano T, Murase T, Nakamura T, and Tatsuno I
- Subjects
- Humans, Xanthine, Xanthine Dehydrogenase, Atherosclerosis, Diabetes Mellitus, Type 2 complications, Liver Diseases, Vascular Stiffness
- Abstract
Background: Type 2 diabetes is a risk factor for atherosclerosis. Oxidative stress, which is a causative factor in insulin resistance, leads to atherosclerosis in patients with diabetes. Xanthine oxidoreductase (XOR) is an enzyme that catalyzes the oxidation of hypoxanthine to xanthine and xanthine to uric acid and is related to oxidative stress. We aimed to examine the influence of plasma XOR activity on arterial stiffness in patients with type 2 diabetes., Methods: In total, 458 patients with type 2 diabetes not receiving antihyperuricemic agents were enrolled and their clinical parameters including plasma XOR activity and the cardio-ankle vascular index (CAVI) were measured. Patients were divided into the liver dysfunction and absence of liver dysfunction groups. Multiple regression analysis was performed., Results: The median plasma XOR activity level was 64.3 pmol/h/mL (33.3-147.3 pmol/h/mL). Plasma XOR activity was correlated significantly and positively with aspartate transaminase and alanine transaminase (ρ > 0.5). The level of plasma XOR activity in the liver dysfunction group was eight-fold higher than that in the absence of liver dysfunction group. A significant positive correlation was observed between plasma XOR activity and the CAVI only in the liver dysfunction group (ρ = 0.3968, P < 0.0043). Multiple regression models demonstrated that plasma XOR activity was an independent predictor of the CAVI in the liver dysfunction group (P = 0.0055)., Conclusions: Our results suggest that plasma XOR activity is associated with arterial stiffness and may have a role in atherosclerosis development in patients with type 2 diabetes and liver dysfunction., Competing Interests: Declaration of Competing Interest The author has no financial or other conflicts of interest to disclose., (Copyright © 2021 Southern Society for Clinical Investigation. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
39. MutationalPatterns: the one stop shop for the analysis of mutational processes.
- Author
-
Manders F, Brandsma AM, de Kanter J, Verheul M, Oka R, van Roosmalen MJ, van der Roest B, van Hoeck A, Cuppen E, and van Boxtel R
- Subjects
- DNA Mutational Analysis, DNA Repair, Humans, Mutation, Mutation Accumulation, Genome, Human, Neoplasms genetics
- Abstract
Background: The collective of somatic mutations in a genome represents a record of mutational processes that have been operative in a cell. These processes can be investigated by extracting relevant mutational patterns from sequencing data., Results: Here, we present the next version of MutationalPatterns, an R/Bioconductor package, which allows in-depth mutational analysis of catalogues of single and double base substitutions as well as small insertions and deletions. Major features of the package include the possibility to perform regional mutation spectra analyses and the possibility to detect strand asymmetry phenomena, such as lesion segregation. On top of this, the package also contains functions to determine how likely it is that a signature can cause damaging mutations (i.e., mutations that affect protein function). This updated package supports stricter signature refitting on known signatures in order to prevent overfitting. Using simulated mutation matrices containing varied signature contributions, we showed that reliable refitting can be achieved even when only 50 mutations are present per signature. Additionally, we incorporated bootstrapped signature refitting to assess the robustness of the signature analyses. Finally, we applied the package on genome mutation data of cell lines in which we deleted specific DNA repair processes and on large cancer datasets, to show how the package can be used to generate novel biological insights., Conclusions: This novel version of MutationalPatterns allows for more comprehensive analyses and visualization of mutational patterns in order to study the underlying processes. Ultimately, in-depth mutational analyses may contribute to improved biological insights in mechanisms of mutation accumulation as well as aid cancer diagnostics. MutationalPatterns is freely available at http://bioconductor.org/packages/MutationalPatterns ., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
40. Human induced pluripotent stem cells display a similar mutation burden as embryonic pluripotent cells in vivo .
- Author
-
Hasaart KAL, Manders F, Ubels J, Verheul M, van Roosmalen MJ, Groenen NM, Oka R, Kuijk E, Lopes SMCS, and Boxtel RV
- Abstract
Induced pluripotent stem cells (iPSCs) hold great promise for regenerative medicine, but genetic instability is a major concern. Embryonic pluripotent cells also accumulate mutations during early development, but how this relates to the mutation burden in iPSCs remains unknown. Here, we directly compared the mutation burden of cultured iPSCs with their isogenic embryonic cells during human embryogenesis. We generated developmental lineage trees of human fetuses by phylogenetic inference from somatic mutations in the genomes of multiple stem cells, which were derived from different germ layers. Using this approach, we characterized the mutations acquired pre-gastrulation and found a rate of 1.65 mutations per cell division. When cultured in hypoxic conditions, iPSCs generated from fetal stem cells of the assessed fetuses displayed a similar mutation rate and spectrum. Our results show that iPSCs maintain a genomic integrity during culture at a similar degree as their pluripotent counterparts do in vivo ., Competing Interests: The authors declare no competing interests., (© 2022 The Authors.)
- Published
- 2022
- Full Text
- View/download PDF
41. Risk assessment of multi-factorial complications after transrectal ultrasound-guided prostate biopsy: a single institutional retrospective cohort study.
- Author
-
Utsumi T, Endo T, Sugizaki Y, Mori T, Somoto T, Kato S, Oka R, Yano M, Kamiya N, and Suzuki H
- Subjects
- Biopsy, Humans, Male, Retrospective Studies, Risk Assessment, Prostate diagnostic imaging, Ultrasonography, Interventional
- Abstract
Background: Transrectal ultrasound-guided prostate biopsy (TRUSPB) is widely used to diagnose prostate cancer (PCa). The aim of this study was to evaluate the risk of multi-factorial complications (febrile genitourinary tract infection (GUTI), rectal bleeding, and urinary retention) after TRUSPB., Methods: N = 2053 patients were Japanese patients undergoing transrectal or transperineal TRUSPB for suspicious of PCa. To assess risk of febrile GUTI adequately, the patients were divided into four groups: low-risk patients before starting a rectal culture, low-risk patients after starting a rectal culture, high-risk patients, and patients undergoing transperineal TRUSPB. Furthermore, to identify risk of rectal bleeding and urinary retention, patients were divided into transrectal and transperineal group., Results: Febrile GUTI significantly decreased owing to risk classification. The frequency of rectal bleeding was 1.43% (transrectal: 25/1742), while it did not happen in transperineal group. The patients with rectal bleeding had a significantly lower body mass index (BMI) (P < 0.01). The frequency of urinary retention was 5.57% (transrectal: 97/1742), while it did not happen in transperineal group. The patients with urinary retention had a significantly higher prostate-specific antigen (PSA) (P = 0.01) in transrectal group., Conclusions: Risk classification, rectal swab culture, and selected antimicrobial prophylaxis for transrectal TRUSPB were extremely effective to reduce the risk of febrile GUTI. Furthermore, lower BMI and higher PSA were novel clinical predictors for rectal bleeding and urinary retention, respectively. When urologists perform transrectal TRUSPB to their patients, they can correctly understand and explain each complication risk to their patients based on these novel risk factors., (© 2021. Japan Society of Clinical Oncology.)
- Published
- 2021
- Full Text
- View/download PDF
42. Molecular characterization of Barrett's esophagus at single-cell resolution.
- Author
-
Busslinger GA, de Barbanson B, Oka R, Weusten BLA, de Maat M, van Hillegersberg R, Brosens LAA, van Boxtel R, van Oudenaarden A, and Clevers H
- Subjects
- Adenocarcinoma genetics, Barrett Esophagus diagnosis, Biomarkers, Biopsy, Chromosomal Instability, Epithelium, Esophagus, Gene Expression, Humans, Hyperplasia pathology, Mutation, Sequence Analysis, DNA, Exome Sequencing, Barrett Esophagus genetics, Barrett Esophagus pathology, Single-Cell Analysis methods
- Abstract
Barrett's esophagus (BE) is categorized, based on morphological appearance, into different stages, which correlate with the risk of developing esophageal adenocarcinoma. More advanced stages are more likely to acquire chromosomal instabilities, but stage-specific markers remain elusive. Here, we performed single-cell DNA-sequencing experiments (scDNAseq) with fresh BE biopsies. Dysplastic BE cells frequently contained chromosomal instability (CIN) regions, and these CIN cells carried mutations corresponding to the COSMIC mutational signature SBS17, which were not present in biopsy-matched chromosomally stable (CS) cells or patient-matched nondiseased control cells. CS cells were predominantly found in nondysplastic BE biopsies. The single-base substitution (SBS) signatures of all CS BE cells analyzed were indistinguishable from those of nondiseased esophageal or gastric cells. Single-cell RNA-sequencing (scRNAseq) experiments with BE biopsies identified two sets of marker genes which facilitate the distinction between columnar BE epithelium and nondysplastic/dysplastic stages. Moreover, histological validation confirmed a correlation between increased CLDN2 expression and the presence of dysplastic BE stages. Our scDNAseq and scRNAseq datasets, which are a useful resource for the community, provide insight into the mutational landscape and gene expression pattern at different stages of BE development.
- Published
- 2021
- Full Text
- View/download PDF
43. Novel Orange Color Pigments Based on La 3 LiMnO 7 .
- Author
-
Oka R, Koyama JI, Morimoto T, and Masui T
- Abstract
La
3 LiMn1- x Tix O7 (0 ≤ x ≤ 0.05) samples were synthesized by a solid-state reaction method, and a single-phase form was observed for the samples in the range of x ≤ 0.03. Crystal structure, optical properties, and color of the La3 LiMn1- x Tix O7 (0 ≤ x ≤ 0.03) samples were characterized. Strong optical absorption was observed at a wavelength between 400 and 550 nm, and a shoulder absorption peak also appeared around 690 nm in all samples; orange colors were also exhibited. Among the samples synthesized, the most brilliant orange color was obtained at La3 LiMn0.97 Ti0.03 O7 . The redness ( a *) and yellowness ( b *) values of this pigment were higher than those of the commercially available orange pigments. Therefore, the orange color of this pigment is brighter than those of the commercial products. Since the La3 LiMn0.97 Ti0.03 O pigment is composed of non-toxic elements, it could be a new environmentally friendly inorganic orange pigment.- Published
- 2021
- Full Text
- View/download PDF
44. Antiviral treatment causes a unique mutational signature in cancers of transplantation recipients.
- Author
-
de Kanter JK, Peci F, Bertrums E, Rosendahl Huber A, van Leeuwen A, van Roosmalen MJ, Manders F, Verheul M, Oka R, Brandsma AM, Bierings M, Belderbos M, and van Boxtel R
- Subjects
- Antiviral Agents therapeutic use, Humans, Transplant Recipients, Antiviral Agents adverse effects, Cytomegalovirus Infections drug therapy, Hematopoietic Stem Cell Transplantation, Mutation, Neoplasms genetics
- Abstract
Genetic instability is a major concern for successful application of stem cells in regenerative medicine. However, the mutational consequences of the most applied stem cell therapy in humans, hematopoietic stem cell transplantation (HSCT), remain unknown. Here we characterized the mutation burden of hematopoietic stem and progenitor cells (HSPCs) of human HSCT recipients and their donors using whole-genome sequencing. We demonstrate that the majority of transplanted HSPCs did not display altered mutation accumulation. However, in some HSCT recipients, we identified multiple HSPCs with an increased mutation burden after transplantation. This increase could be attributed to a unique mutational signature caused by the antiviral drug ganciclovir. Using a machine learning approach, we detected this signature in cancer genomes of individuals who received HSCT or solid organ transplantation earlier in life. Antiviral treatment with nucleoside analogs can cause enhanced mutagenicity in transplant recipients, which may ultimately contribute to therapy-related carcinogenesis., Competing Interests: Declaration of interests A.R.H., A.v.L., and R.v.B. are named as inventors on a patent application filed resulting from this work., (Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
45. Mothers' and health workers' exposure to breastmilk substitutes promotions in Abidjan, Côte d'Ivoire.
- Author
-
Emerson J, Kouassi F, Oka Kouamé R, Damey FN, Cisse AS, and Tharaney M
- Subjects
- Adolescent, Breast Feeding, Child, Cote d'Ivoire, Female, Humans, Infant, Marketing, Milk, Human, Mothers
- Abstract
Marketing of breastmilk substitutes (BMS) continues to undermine breastfeeding globally, and low income countries experiencing rapid economic growth are especially vulnerable as expanding BMS markets. The objective of the study was to understand the prevalence of exposure to BMS promotions among mothers of children 0-23 months, the frequency and type of contacts between BMS companies and health workers and the presence of educational/informational materials and branded equipment associated with such companies in health facilities in Abidjan using the World Health Organization's NetCode protocol. The methods included structured interviews with health workers and mothers and observations of equipment/materials in a sample of 42 facilities, 330 mothers and 129 health workers. Descriptive statistics were produced, and chi-squared tests were used to assess differences by child age and facility type. Forty-three per cent of mothers were advised to feed BMS products in the past 6 months, with a significantly higher percentage of mothers of older children (6-23 months) advised compared to infants 0-5 months. Two thirds (66%) of mothers had seen promotions outside of facilities. Among health workers, 63% were contacted by BMS companies, and only 8% were familiar with the International Code of Marketing of BMS. Differences were found between public/private facilities in the types of requests BMS companies made to health workers. Strong actions are needed in Côte d'Ivoire to prevent BMS promotion in the health system, including increasing health workers' knowledge of the International Code and national regulations, monitoring violations and reaching mothers and families to promote optimal breastfeeding practices., (© 2021 The Authors. Maternal & Child Nutrition published by John Wiley & Sons Ltd.)
- Published
- 2021
- Full Text
- View/download PDF
46. High presepsin concentrations in bile and its marked elevation in biliary tract diseases: A retrospective analysis.
- Author
-
Yamaguchi T, Ohira M, Kawagoe N, Nakamura S, Tanaka S, Oka R, Watanabe Y, Sato Y, Nagayama D, Saiki A, Matsuzawa Y, Bujo H, Terai K, Hiruta N, Tatsuno I, Nakaseko C, Kikuchi H, Matsuoka K, Yokota H, and Shimizu N
- Subjects
- Bile, Biomarkers, Humans, Lipopolysaccharide Receptors, Peptide Fragments, Retrospective Studies, Biliary Tract Diseases diagnosis, Sepsis diagnosis
- Abstract
Background: Presepsin is a diagnostic and prognostic biomarker of both bacterial infection and sepsis; however, elevated presepsin levels have also been observed without sepsis. We conducted several analyses to evaluate the clinical laboratory parameters affecting presepsin levels., Method: We analyzed the association between sequential organ failure assessment (SOFA) scores and plasma presepsin levels and then analyzed clinical laboratory parameters in 567 patients with univariate and multivariate regression analysis and analysis of covariance (ANCOVA). We also determined presepsin in the bile of 11 patients and examined the presepsin immunostaining in liver., Results: Spearman's rank correlation analysis with log
e change revealed that presepsin levels were closely associated with loge -transformed SOFA score (ρ = 0.541), alkaline phosphatase (ALP); (ρ = 0.454) and gamma-glutamyl transferase; (ρ = 0.505). Multivariate regression analysis revealed that loge -transformed SOFA score (β-coefficient = 0.316), ALP level (β-coefficient = 0.380), and creatinine level (β-coefficient = 0.290) independently and significantly affected loge presepsin levels. ANCOVA revealed that presepsin levels were significantly higher in patients with hepatobiliary disease. Patients who presented with dilatation of the bile ducts and elevated ALP levels or total bilirubin levels exhibited high presepsin levels in the bile. Presepsin production in liver Kupffer cells was also confirmed by immunostaining., Conclusion: Presepsin levels is correlated with the elevation of biliary enzymes in patients without renal dysfunction or sepsis. Additionally, presepsin exists with high concentrations in the bile and is positive in Kupffer cells., (Copyright © 2021. Published by Elsevier B.V.)- Published
- 2021
- Full Text
- View/download PDF
47. Defects in 8-oxo-guanine repair pathway cause high frequency of C > A substitutions in neuroblastoma.
- Author
-
van den Boogaard ML, Oka R, Hakkert A, Schild L, Ebus ME, van Gerven MR, Zwijnenburg DA, Molenaar P, Hoyng LL, Dolman MEM, Essing AHW, Koopmans B, Helleday T, Drost J, van Boxtel R, Versteeg R, Koster J, and Molenaar JJ
- Subjects
- Adenine metabolism, Child, Cytosine metabolism, DNA Damage, DNA Glycosylases genetics, DNA Glycosylases metabolism, Female, Guanine metabolism, Guanosine genetics, Guanosine metabolism, Humans, Male, Mutagenesis, Neoplasm Recurrence, Local genetics, Neuroblastoma metabolism, Oxidative Stress, Polymorphism, Single Nucleotide genetics, DNA Repair genetics, Guanosine analogs & derivatives, Neuroblastoma genetics
- Abstract
Neuroblastomas are childhood tumors with frequent fatal relapses after induction treatment, which is related to tumor evolution with additional genomic events. Our whole-genome sequencing data analysis revealed a high frequency of somatic cytosine > adenine (C > A) substitutions in primary neuroblastoma tumors, which was associated with poor survival. We showed that increased levels of C > A substitutions correlate with copy number loss (CNL) of OGG1 or MUTYH Both genes encode DNA glycosylases that recognize 8-oxo-guanine (8-oxoG) lesions as a first step of 8-oxoG repair. Tumor organoid models with CNL of OGG1 or MUTYH show increased 8-oxoG levels compared to wild-type cells. We used CRISPR-Cas9 genome editing to create knockout clones of MUTYH and OGG1 in neuroblastoma cells. Whole-genome sequencing of single-cell OGG1 and MUTYH knockout clones identified an increased accumulation of C > A substitutions. Mutational signature analysis of these OGG1 and MUTYH knockout clones revealed enrichment for C > A signatures 18 and 36, respectively. Clustering analysis showed that the knockout clones group together with tumors containing OGG1 or MUTYH CNL. In conclusion, we demonstrate that defects in 8-oxoG repair cause accumulation of C > A substitutions in neuroblastoma, which contributes to mutagenesis and tumor evolution., Competing Interests: The authors declare no competing interest., (Copyright © 2021 the Author(s). Published by PNAS.)
- Published
- 2021
- Full Text
- View/download PDF
48. Mutation signatures of pediatric acute myeloid leukemia and normal blood progenitors associated with differential patient outcomes.
- Author
-
Brandsma AM, Bertrums EJM, van Roosmalen MJ, Hofman DA, Oka R, Verheul M, Manders F, Ubels J, Belderbos ME, and van Boxtel R
- Subjects
- Bone Marrow pathology, Child, Hematopoiesis, Hematopoietic Stem Cells pathology, Humans, Mutation, Young Adult, Leukemia, Myeloid, Acute genetics
- Abstract
Acquisition of oncogenic mutations with age is believed to be rate limiting for carcinogenesis. However, the incidence of leukemia in children is higher than in young adults. Here we compare somatic mutations across pediatric acute myeloid leukemia (pAML) patient-matched leukemic blasts and hematopoietic stem and progenitor cells (HSPCs), as well as HSPCs from age-matched healthy donors. HSPCs in the leukemic bone marrow have limited genetic relatedness and share few somatic mutations with the cell-of-origin of the malignant blasts, suggesting polyclonal hematopoiesis in pAML patients. Compared to normal HSPCs, a subset of pAML cases harbored more somatic mutations and a distinct composition of mutational process signatures. We hypothesize these cases might have arisen from a more committed progenitor. This subset had better outcomes than pAML cases with mutation burden comparable to age-matched healthy HSPCs. Our study provides insights into the etiology and patient stratification of pAML., Competing Interests: Declaration of interests Authors declare no competing interests.
- Published
- 2021
- Full Text
- View/download PDF
49. Evaluating CRISPR-based prime editing for cancer modeling and CFTR repair in organoids.
- Author
-
Geurts MH, de Poel E, Pleguezuelos-Manzano C, Oka R, Carrillo L, Andersson-Rolf A, Boretto M, Brunsveld JE, van Boxtel R, Beekman JM, and Clevers H
- Subjects
- Alleles, Amino Acid Substitution, Animals, Epithelial Cells metabolism, Genetic Therapy methods, Hepatocytes metabolism, Humans, Sequence Analysis, DNA, CRISPR-Cas Systems, Cystic Fibrosis Transmembrane Conductance Regulator genetics, Gene Editing, Mutation, Oncogenes genetics, Organoids
- Abstract
Prime editing is a recently reported genome editing tool using a nickase-cas9 fused to a reverse transcriptase that directly synthesizes the desired edit at the target site. Here, we explore the use of prime editing in human organoids. Common TP53 mutations can be correctly modeled in human adult stem cell-derived colonic organoids with efficiencies up to 25% and up to 97% in hepatocyte organoids. Next, we functionally repaired the cystic fibrosis CFTR-F508del mutation and compared prime editing to CRISPR/Cas9-mediated homology-directed repair and adenine base editing on the CFTR-R785* mutation. Whole-genome sequencing of prime editing-repaired organoids revealed no detectable off-target effects. Despite encountering varying editing efficiencies and undesired mutations at the target site, these results underline the broad applicability of prime editing for modeling oncogenic mutations and showcase the potential clinical application of this technique, pending further optimization., (© 2021 Geurts et al.)
- Published
- 2021
- Full Text
- View/download PDF
50. Patient-derived organoids model cervical tissue dynamics and viral oncogenesis in cervical cancer.
- Author
-
Lõhmussaar K, Oka R, Espejo Valle-Inclan J, Smits MHH, Wardak H, Korving J, Begthel H, Proost N, van de Ven M, Kranenburg OW, Jonges TGN, Zweemer RP, Veersema S, van Boxtel R, and Clevers H
- Subjects
- Animals, Carcinogenesis, Epithelium, Female, Humans, Mice, Organoids, Papillomaviridae, Uterine Cervical Neoplasms
- Abstract
Cervical cancer is a common gynecological malignancy often caused by high-risk human papillomavirus. There is a paucity of human-derived culture systems to study the cervical epithelium and the cancers derived thereof. Here we describe a long-term culturing protocol for ecto- and endocervical epithelia that generates 3D organoids that stably recapitulate the two tissues of origin. As evidenced for HSV-1, organoid-based cervical models may serve to study sexually transmitted infections. Starting from Pap brush material, a small biobank of tumoroids derived from affected individuals was established that retained the causative human papillomavirus (HPV) genomes. One of these uniquely carried the poorly characterized HPV30 subtype, implying a potential role in carcinogenesis. The tumoroids displayed differential responses to common chemotherapeutic agents and grew as xenografts in mice. This study describes an experimental platform for cervical (cancer) research and for future personalized medicine approaches., Competing Interests: Declaration of interests H.C. is an inventor on several patents involving adult stem cell-based organoid technology. His full declaration is given at https://www.uu.nl/staff/JCClevers/., (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.