23 results on '"Ponzio, F"'
Search Results
2. A Novel Proof-of-concept Framework for the Exploitation of ConvNets on Whole Slide Images
- Author
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Mascolini, A., primary, Puzzo, S., additional, Incatasciato, G., additional, Ponzio, F., additional, Ficarra, E., additional, and Di Cataldo, S., additional
- Published
- 2020
- Full Text
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3. Enhanced ionic mobility in Organic Ionic Plastic Crystal – Dendrimer solid electrolytes
- Author
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Greene, G.W., Ponzio, F., Iranipour, N., Zhu, H., Seeber, A., Forsyth, M., and Howlett, P.C.
- Published
- 2015
- Full Text
- View/download PDF
4. METHOD AND SYSTEM FOR DETECTING VOLUNTARY BINARY RESPONSES BY ANALYZING THE PUPIL DIAMETER OF A SUBJECT
- Author
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Roatta, S., De'Sperati, C, Mesin, L, Pasian, V, Ponzio, F., S., Roatta, De'Sperati, C, Mesin, L, Pasian, V, and Ponzio, F.
- Published
- 2019
5. Low-cost pupillometry for human-computer interface
- Author
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Goddi, A, Ponzio, F, Ficarra, E, di Cataldo, S, and Roatta, S.
- Published
- 2018
6. 2017 OH7
- Author
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Laux, U., Stecklum, B., Bacci, P., Maestripieri, M., Carotta, M., Tesi, L., Fagioli, G., Bonomi, R., Jaeger, M., Prosperi, E., Vollmann, W., Spoto, F., Dennefeld, M., Thuillot, W., Bouquillon, S., Taris, F., Carlucci, T., Barache, C., Fumagalli, A., Sicoli, P., Testa, A., Balam, D. D., Wiggins, P., Ikari, Y., Gilio, R., Ponzio, F., Gallotti, R., Belmonte, A., Carbognani, A., Camarasa, J., Hidas, A., Hug, G., Fornas, G., Carreno, A., Birtwhistle, P., Tinella, V., Nicolini Astronomical Robotic Observatory, N. A. R. O., Sárneczky, K., Ordasi, A., Hudin, L., Denneau, L., Heinze, A., Weiland, H., Stalder, B., Tonry, J., Jacques, C., Pimentel, E., Barros, J., Wells, G., Leuty, J., Bamberger, D., Thüringer Landessternwarte Tautenburg (TLS), Laboratoire de Mécanique, Modélisation et Procédés Propres (M2P2), Centre National de la Recherche Scientifique (CNRS)-École Centrale de Marseille (ECM)-Aix Marseille Université (AMU), Department of Computer Science [Verona] (UNIVR | DI), University of Verona (UNIVR), Institut d'Astrophysique de Paris (IAP), Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC), Institut de Mécanique Céleste et de Calcul des Ephémérides (IMCCE), Centre National de la Recherche Scientifique (CNRS)-Université de Lille-Observatoire de Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC), Systèmes de Référence Temps Espace (SYRTE), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire de Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), University of Auckland [Auckland], Astronomical Observatory of the Autonomous Region of the Aosta Valley (OAVDA), Laboratoire d'Ingénierie des Matériaux (LIM), Centre National de la Recherche Scientifique (CNRS), Konkoly Observatory, Research Centre for Astronomy and Earth Sciences [Budapest], Hungarian Academy of Sciences (MTA)-Hungarian Academy of Sciences (MTA), Laboratoire de l'Accélérateur Linéaire (LAL), and Centre National de la Recherche Scientifique (CNRS)-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Université Paris-Sud - Paris 11 (UP11)
- Subjects
[PHYS]Physics [physics] ,[PHYS.ASTR]Physics [physics]/Astrophysics [astro-ph] - Abstract
International audience; Available from the Minor Planet Center.
- Published
- 2017
7. Procedimento e sistema per la rilevazione di risposte binarie tramite analisi del diametro pupillare di un soggetto
- Author
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Roatta, S, De'Sperati, C, Mesin, L, Paisan, V, and Ponzio, F
- Published
- 2017
8. Unsteadiness and transition to turbulence in woven spacer filled channels for Membrane Distillation
- Author
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Ciofalo, M, primary, Ponzio, F, additional, Tamburini, A, additional, Cipollina, A, additional, and Micale, G, additional
- Published
- 2017
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9. Ionic transport through a composite structure of N-ethyl-N-methylpyrrolidinium tetrafluoroborate organic ionic plastic crystals reinforced with polymer nanofibres.
- Author
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Iranipour, N., Gunzelmann, D. J., Seeber, A., Vongsvivut, J., Doherty, C., Ponzio, F., O'Dell, L. A., Hollenkamp, A. F., Forsyth, M., and Howlett, P. C.
- Abstract
The incorporation of polyvinylidene difluoride (PVDF) electrospun nanofibres within N-ethyl-N-methylpyrrolidinium tetrafluoroborate, [C
2 mpyr][BF4 ] was investigated with a view to fabricating self-standing membranes for various electrochemical device applications, in particular lithium metal batteries. Significant improvement in mechanical properties and ionic conduction was demonstrated in a previous study, which also demonstrated the remarkably high performance of the lithium-doped composite material in a device. We now seek a fundamental understanding of the role of fibres within the matrix of the plastic crystal, which is essential for optimizing device performance through fine-tuning of the composite material properties. The focus of the current study is therefore a thorough investigation of the phase behaviour and conduction behaviour of the pure and the lithium-doped (as LiBF4 ) plastic crystal, with and without incorporation of polymer nanofibres. Analysis of the structure of the plastic crystal, including the effects of lithium ions and the incorporation of PVDF fibres, was conducted by means of synchrotron XRD. Ion dynamics were evaluated using VT solid-state NMR spectroscopy. ATR-FTIR spectroscopy was employed to gain insights into the molecular interactions of doped lithium ions and/or the PVDF nanofibres in the matrix of the [C2 mpyr][BF4 ] composites. Preliminary measurements using PALS were conducted to probe structural defects within the pure materials. It was found that ion transport within the plastic crystal was significantly altered by doping with lithium ions due to the precipitation of a second phase in the structure. The incorporation of the fibres activated more mobile sites in the systems, but restricted ion mobility with different trends being observed for each ion species in each crystalline phase. In the presence of the fibres a strong interaction observed between the Li ion and the pyrrolidinium ring disappeared and formation of the second phase was prevented. As a result, an increased number of mobile lithium ions are released into the solid solution structure of the matrix, simultaneously removing the blocking effect of the second phase. Thus, ion conduction was remarkably improved within the Li-doped composite compared to the neat Li-doped plastic crystal. [ABSTRACT FROM AUTHOR]- Published
- 2015
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10. Oxidant Control of Polydopamine Surface Chemistry in Acids: A Mechanism-Based Entry to Superhydrophilic-Superoleophobic Coatings
- Author
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Marco d'Ischia, Julien Barthes, Jérôme Bour, Vincent Ball, Florian Ponzio, Marc Michel, Joseph Hemmerlé, Philippe Bertani, Biomatériaux et Bioingénierie (BB), Université de Strasbourg (UNISTRA)-Matériaux et nanosciences d'Alsace (FMNGE), Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM), Ponzio, F., Barthès, J., Bour, J., Michel, M., Bertani, P., Hemmerlé, J., D'Ischia, Marco, and Ball, V.
- Subjects
Chemical analysi ,Oxidant ,Surface chemistry Acidic condition ,Reaction mechanism ,General Chemical Engineering ,education ,Neurophysiology ,Mechanism based ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Coating ,chemistry.chemical_compound ,Technological applications ,Superhydrophilicity ,Chemical oxidation ,Oxidation ,Materials Chemistry ,Efficient surface ,Organic chemistry ,Ammonium ,Deposition ,Hydrophilicity ,Amine ,Oxidation condition ,Autoxidation ,Sodium periodate ,Periodate ,[CHIM.MATE]Chemical Sciences/Material chemistry ,General Chemistry ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Homogeneous deposition ,Sodium sulfate ,chemistry ,Chemical engineering ,Super-hydrophilic ,Surface modification ,Biocompatibility ,0210 nano-technology - Abstract
Efficient surface functionalization with polydopamine (PDA) films can be easily achieved on virtually any object via single immersion in slightly basic dopamine solutions. In such conditions, however, poor homogeneity, low thickness, and long time of reaction are usually the major limitations. Herein, we report a rational entry to the control of PDA deposition via chemical oxidation under slightly acidic conditions (pH 5.0) ensuring inhibition of uncontrolled autoxidation processes to gain insight about the reaction mechanism and the impact of oxidation conditions on PDA structure. Comparative chemical analysis of dopamine oxidation with three different oxidants (ammonium peroxodisulfate, sodium periodate, and copper sulfate) revealed significant differences in the reaction course and allowed selection of periodate for the fast and homogeneous deposition of PDA films with thickness never before reported. Notably, PDA coatings with unprecedented superhydrophilic/superoleophobic properties were obtained under conditions of high periodate concentration due to degradation of quinone units to yield carboxyl functions. Moreover, these films still present biocompatibility and metal cation reduction properties. Overall, these results provide a novel rational methodology to tailor PDA coatings for technological applications based on periodate control over dopamine polymerization and postsynthetic functional group modification.
- Published
- 2016
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11. Unsteadiness and transition to turbulence in woven spacer filled channels for Membrane Distillation
- Author
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Michele Ciofalo, Andrea Cipollina, Francesco Nicolò Ponzio, Gdm Micale, Alessandro Tamburini, Ciofalo, M., Ponzio, F., Tamburini, A., Cipollina, A., and Micale, G.
- Subjects
History ,Flow (psychology) ,Thermodynamics ,02 engineering and technology ,Computational fluid dynamics ,Education ,Physics::Fluid Dynamics ,symbols.namesake ,020401 chemical engineering ,Liquid crystal ,0204 chemical engineering ,business.industry ,Turbulence ,Chemistry ,Oscillation ,Spacer-filled channels, CFD, membrane distillation, turbulence, RANS, DNS ,Reynolds number ,Mechanics ,021001 nanoscience & nanotechnology ,Computer Science Applications ,Heat transfer ,symbols ,0210 nano-technology ,Reynolds-averaged Navier–Stokes equations ,business - Abstract
To characterize the performance of Membrane Distillation (MD) modules, channels filled with woven spacers were investigated by Computational Fluid Dynamics (including Direct Numerical Simulations and the use of the SST k-Ï turbulence model) and by parallel experiments with Thermochromic Liquid Crystals. The cases considered here regard mutually orthogonal filaments with a spacer pitch to channel height ratio P/H=2, two spacer orientations θ with respect to the main flow (0° and 45°), and bulk Reynolds numbers Re from â¼200 to â¼2000, an interval of great interest in practical MD applications. For both values of θ, CFD predicted steady-state flow for Re up to â¼300, and chaotic flow for Re larger than â¼400. In the intermediate range Reâ300-400, periodic flow regimes were predicted for both orientations. These regimes were of particular interest and complexity, as they exhibited a slow global oscillation of the flow superimposed on high order harmonics corresponding to fast local oscillations. Experiments confirmed the appearance of unsteadiness for Re>â¼300. Heat transfer and friction were little affected by unsteadiness and exhibited a smooth behaviour with Re. The agreement with the experimental results was good using DNS, and acceptable using RANS.
- Published
- 2017
12. Experimental and computational investigation of heat transfer in channels filled by woven spacers
- Author
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Alessandro Tamburini, Giorgio Micale, Francesco Nicolò Ponzio, Andrea Cipollina, Michele Ciofalo, Ponzio, F., Tamburini, A., Cipollina, A., Micale, G., and Ciofalo, M.
- Subjects
Settore ING-IND/26 - Teoria Dello Sviluppo Dei Processi Chimici ,Materials science ,Settore ING-IND/25 - Impianti Chimici ,Computational Fluid Dynamics ,Digital image processing ,Membrane Distillation ,Thermochromic Liquid Crystals ,Woven spacer ,Flow (psychology) ,02 engineering and technology ,Heat transfer coefficient ,Computational fluid dynamics ,Computational Fluid Dynamic ,symbols.namesake ,020401 chemical engineering ,0204 chemical engineering ,Fluid Flow and Transfer Processes ,Settore ING-IND/24 - Principi Di Ingegneria Chimica ,Thermochromic Liquid Crystal ,Turbulence ,business.industry ,Mechanical Engineering ,Reynolds number ,Mechanics ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Aspect ratio (image) ,Heat transfer ,symbols ,0210 nano-technology ,business - Abstract
Models of woven-type spacer-filled channels were investigated by Computational Fluid Dynamics (CFD) and parallel experiments in order to characterize the performance of Membrane Distillation (MD) modules. The case of overlapped spacers was analysed in a companion paper. Experiments were based on a non-intrusive technique using Thermochromic Liquid Crystals (TLC) and digital image processing, and provided the distribution of the local convective heat transfer coefficient on a thermally active wall. CFD simulations ranged from steady-state conditions to unsteady and early turbulent flow, covering a Reynolds number interval of great practical interest in real MD applications. A specific spacer aspect ratio (pitch-to-channel height ratio of 2) and two different spacer orientations with respect to the main flow (0° and 45°) were considered. Among the existing studies on spacer-filled channels, this is one of the first dealing with woven spacers, and one of the very few in which local experimental and computational heat transfer results are compared. Results suggest a convenience in adopting the 45° orientation for applications that can be operated at very low Reynolds numbers, since convenience decreases as the Reynolds number increases.
- Published
- 2017
13. The Current Diagnostic Performance of MRI-Based Radiomics for Glioma Grading: A Meta-Analysis.
- Author
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De Maria L, Ponzio F, Cho HH, Skogen K, Tsougos I, Gasparini M, Zeppieri M, Ius T, Ugga L, Panciani PP, Fontanella MM, Brinjikji W, and Agosti E
- Subjects
- Humans, Neuroimaging standards, Neuroimaging methods, Radiomics, Glioma diagnostic imaging, Glioma pathology, Magnetic Resonance Imaging standards, Magnetic Resonance Imaging methods, Brain Neoplasms diagnostic imaging, Brain Neoplasms pathology, Neoplasm Grading
- Abstract
Background: Multiple radiomics models have been proposed for grading glioma using different algorithms, features, and sequences of magnetic resonance imaging. The research seeks to assess the present overall performance of radiomics for grading glioma., Methods: A systematic literature review of the databases Ovid MEDLINE PubMed, and Ovid EMBASE for publications published on radiomics for glioma grading between 2012 and 2023 was performed. The systematic review was carried out following the criteria of Preferred Reporting Items for Systematic Reviews and Meta-Analysis., Results: In the meta-analysis, a total of 7654 patients from 40 articles, were assessed. R-package mada was used for modeling the joint estimates of specificity (SPE) and sensitivity (SEN). Pooled event rates across studies were performed with a random-effects meta-analysis. The heterogeneity of SPE and SEN were based on the χ2 test. Overall values for SPE and SEN in the differentiation between high-grade gliomas (HGGs) and low-grade gliomas (LGGs) were 84% and 91%, respectively. With regards to the discrimination between World Health Organization (WHO) grade 4 and WHO grade 3, the overall SPE was 81% and the SEN was 89%. The modern non-linear classifiers showed a better trend, whereas textural features tend to be the best-performing (29%) and the most used., Conclusions: Our findings confirm that present radiomics' diagnostic performance for glioma grading is superior in terms of SEN and SPE for the HGGs vs. LGGs discrimination task when compared to the WHO grade 4 vs. 3 task., Competing Interests: The authors declare no conflict of interest., (© 2024 The Author(s). Published by IMR Press.)
- Published
- 2024
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14. Radiomics for differentiation of gliomas from primary central nervous system lymphomas: a systematic review and meta-analysis.
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Garaba A, Aslam N, Ponzio F, Panciani PP, Brinjikji W, Fontanella M, and De Maria L
- Abstract
Background and Objective: Numerous radiomics-based models have been proposed to discriminate between central nervous system (CNS) gliomas and primary central nervous system lymphomas (PCNSLs). Given the heterogeneity of the existing models, we aimed to define their overall performance and identify the most critical variables to pilot future algorithms., Methods: A systematic review of the literature and a meta-analysis were conducted, encompassing 12 studies and a total of 1779 patients, focusing on radiomics to differentiate gliomas from PCNSLs. A comprehensive literature search was performed through PubMed, Ovid MEDLINE, Ovid EMBASE, Web of Science, and Scopus databases. Overall sensitivity (SEN) and specificity (SPE) were estimated. Event rates were pooled using a random-effects meta-analysis, and the heterogeneity was assessed using the χ2 test., Results: The overall SEN and SPE for differentiation between CNS gliomas and PCNSLs were 88% (95% CI = 0.83 - 0.91) and 87% (95% CI = 0.83 - 0.91), respectively. The best-performing features were the ones extracted from the Gray Level Run Length Matrix (GLRLM; ACC 97%), followed by those obtained from the Neighboring Gray Tone Difference Matrix (NGTDM; ACC 93%), and shape-based features (ACC 91%). The 18F-FDG-PET/CT was the best-performing imaging modality (ACC 97%), followed by the MRI CE-T1W (ACC 87% - 95%). Most studies applied a cross-validation analysis (92%)., Conclusion: The current SEN and SPE of radiomics to discriminate CNS gliomas from PCNSLs are high, making radiomics a helpful method to differentiate these tumor types. The best-performing features are the GLRLM, NGTDM, and shape-based features. The 18F-FDG-PET/CT imaging modality is the best-performing, while the MRI CE-T1W is the most used., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2024 Garaba, Aslam, Ponzio, Panciani, Brinjikji, Fontanella and De Maria.)
- Published
- 2024
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15. Radiomics for Differentiation of Pediatric Posterior Fossa Tumors: A Meta-Analysis and Systematic Review of the Literature.
- Author
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Garaba A, Ponzio F, Grasso EA, Brinjikji W, Fontanella MM, and De Maria L
- Abstract
Purpose: To better define the overall performance of the current radiomics-based models for the discrimination of pediatric posterior fossa tumors., Methods: A comprehensive literature search of the databases PubMed, Ovid MEDLINE, Ovid EMBASE, Web of Science, and Scopus was designed and conducted by an experienced librarian. We estimated overall sensitivity (SEN) and specificity (SPE). Event rates were pooled across studies using a random-effects meta-analysis, and the χ
2 test was performed to assess the heterogeneity., Results: Overall SEN and SPE for differentiation between MB, PA, and EP were found to be promising, with SEN values of 93% (95% CI = 0.88-0.96), 83% (95% CI = 0.66-0.93), and 85% (95% CI = 0.71-0.93), and corresponding SPE values of 87% (95% CI = 0.82-0.90), 95% (95% CI = 0.90-0.98) and 90% (95% CI = 0.84-0.94), respectively. For MB, there is a better trend for LR classifiers, while textural features are the most used and the best performing (ACC 96%). As for PA and EP, a synergistic employment of LR and NN classifiers, accompanied by geometrical or morphological features, demonstrated superior performance (ACC 94% and 96%, respectively)., Conclusions: The diagnostic performance is high, making radiomics a helpful method to discriminate these tumor types. In the forthcoming years, we expect even more precise models.- Published
- 2023
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16. Cigarette Smoking and Intracranial Aneurysms: A Pilot Analysis of SNPs in the CYP2A6 Gene in the Italian Population.
- Author
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Ferrari E, Cornali C, Fiorindi A, Agosti E, Gallone S, Rubino E, Ponzio F, Fontanella MM, and De Maria L
- Subjects
- Humans, Polymorphism, Single Nucleotide genetics, Risk Factors, Italy epidemiology, Cytochrome P-450 CYP2A6 genetics, Cigarette Smoking adverse effects, Cigarette Smoking epidemiology, Cigarette Smoking genetics, Intracranial Aneurysm epidemiology, Intracranial Aneurysm genetics
- Abstract
Background: Cigarette smoking is a modifiable risk factor associated with formation and rupture of intracranial aneurysms (IAs). Cytochrome P450 2A6 (CYP2A6) is the main enzyme implied in catabolism of nicotine and xenobiotics, giving rise to oxidative stress products. Our study investigated the associations between specific single-nucleotide polymorphisms (SNPs) in the CYP2A6 gene and the presence of sporadic IAs in a cluster of Italian patients, as well as their rupture regarding cigarette smoking habit., Methods: Three hundred and thirty-one Italian patients with sporadic IAs were recruited in a single institution. We recorded data on clinical onset with subarachnoid hemorrhage (SAH) and smoking habit. Genetic analysis was performed with a standard procedure on peripheral blood samples: CYP2A6 ∗1B2, CYP2A6 ∗2, and CYP2A6 ∗14 SNPs were analyzed in the study group along with 150 healthy control subjects. Statistical analysis was conducted according to genetic association study guidelines., Results: In the patient cohort, the frequency of aSAH was significantly higher in current smokers (P < 0.001; OR=17.45), regardless of the pattern of CYP2A6 SNPs. There was a correlation between IA rupture and cigarette smoking in patients with the heterozygous CYP2A6 ∗1B2 allele (P < 0.001; OR=15.47). All patients carrying the heterozygous CYP2A6 ∗14 allele had an aSAH event (100%), regardless of smoking habit, although this correlation was not statistically significant (P = 1)., Conclusions: According to our findings, a cigarette smoker carrying a fully active CYP2A6 enzyme (heterozygous ∗1B2 allele) may have an increased risk of IA rupture compared to those with functionally less active variants: further investigation on a larger sample is needed to verify this result. The role of the heterozygous CYP2A6 ∗14 allele in aSAH is yet to be clarified., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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17. Improving CNNs classification with pathologist-based expertise: the renal cell carcinoma case study.
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Ponzio F, Descombes X, and Ambrosetti D
- Subjects
- Pregnancy, Humans, Female, Pathologists, Neural Networks, Computer, Carcinoma, Renal Cell, Kidney Neoplasms diagnosis, Adenoma, Oxyphilic
- Abstract
The prognosis of renal cell carcinoma (RCC) malignant neoplasms deeply relies on an accurate determination of the histological subtype, which currently involves the light microscopy visual analysis of histological slides, considering notably tumor architecture and cytology. RCC subtyping is therefore a time-consuming and tedious process, sometimes requiring expert review, with great impact on diagnosis, prognosis and treatment of RCC neoplasms. In this study, we investigate the automatic RCC subtyping classification of 91 patients, diagnosed with clear cell RCC, papillary RCC, chromophobe RCC, or renal oncocytoma, through deep learning based methodologies. We show how the classification performance of several state-of-the-art Convolutional Neural Networks (CNNs) are perfectible among the different RCC subtypes. Thus, we introduce a new classification model leveraging a combination of supervised deep learning models (specifically CNNs) and pathologist's expertise, giving birth to a hybrid approach that we termed ExpertDeepTree (ExpertDT). Our findings prove ExpertDT's superior capability in the RCC subtyping task, with respect to traditional CNNs, and suggest that introducing some expert-based knowledge into deep learning models may be a valuable solution for complex classification cases., (© 2023. Springer Nature Limited.)
- Published
- 2023
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18. Exploiting generative self-supervised learning for the assessment of biological images with lack of annotations.
- Author
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Mascolini A, Cardamone D, Ponzio F, Di Cataldo S, and Ficarra E
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- Animals, Cell Count, Chlorocebus aethiops, Humans, SARS-CoV-2, Supervised Machine Learning, COVID-19, Image Processing, Computer-Assisted methods
- Abstract
Motivation: Computer-aided analysis of biological images typically requires extensive training on large-scale annotated datasets, which is not viable in many situations. In this paper, we present Generative Adversarial Network Discriminator Learner (GAN-DL), a novel self-supervised learning paradigm based on the StyleGAN2 architecture, which we employ for self-supervised image representation learning in the case of fluorescent biological images., Results: We show that Wasserstein Generative Adversarial Networks enable high-throughput compound screening based on raw images. We demonstrate this by classifying active and inactive compounds tested for the inhibition of SARS-CoV-2 infection in two different cell models: the primary human renal cortical epithelial cells (HRCE) and the African green monkey kidney epithelial cells (VERO). In contrast to previous methods, our deep learning-based approach does not require any annotation, and can also be used to solve subtle tasks it was not specifically trained on, in a self-supervised manner. For example, it can effectively derive a dose-response curve for the tested treatments., Availability and Implementation: Our code and embeddings are available at https://gitlab.com/AlesioRFM/gan-dl StyleGAN2 is available at https://github.com/NVlabs/stylegan2 ., (© 2022. The Author(s).)
- Published
- 2022
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19. Review: the potential impact of surface crystalline states of titanium for biomedical applications.
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Barthes J, Ciftci S, Ponzio F, Knopf-Marques H, Pelyhe L, Gudima A, Kientzl I, Bognár E, Weszl M, Kzhyshkowska J, and Vrana NE
- Subjects
- Anti-Bacterial Agents pharmacology, Crystallization, Implants, Experimental, Surface Properties, Biomedical Technology methods, Titanium chemistry
- Abstract
In many biomedical applications, titanium forms an interface with tissues, which is crucial to ensure its long-term stability and safety. In order to exert control over this process, titanium implants have been treated with various methods that induce physicochemical changes at nano and microscales. In the past 20 years, most of the studies have been conducted to see the effect of topographical and physicochemical changes of titanium surface after surface treatments on cells behavior and bacteria adhesion. In this review, we will first briefly present some of these surface treatments either chemical or physical and we explain the biological responses to titanium with a specific focus on adverse immune reactions. More recently, a new trend has emerged in titanium surface science with a focus on the crystalline phase of titanium dioxide and the associated biological responses. In these recent studies, rutile and anatase are the major two polymorphs used for biomedical applications. In the second part of this review, we consider this emerging topic of the control of the crystalline phase of titanium and discuss its potential biological impacts. More in-depth analysis of treatment-related surface crystalline changes can significantly improve the control over titanium/host tissue interface and can result in considerable decreases in implant-related complications, which is currently a big burden on the healthcare system.
- Published
- 2018
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20. Robust Alginate-Catechol@Polydopamine Free-Standing Membranes Obtained from the Water/Air Interface.
- Author
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Ponzio F, Le Houerou V, Zafeiratos S, Gauthier C, Garnier T, Jierry L, and Ball V
- Subjects
- Air, Glucuronic Acid chemistry, Hexuronic Acids chemistry, Particle Size, Surface Properties, Alginates chemistry, Catechols chemistry, Indoles chemistry, Polymers chemistry, Water chemistry
- Abstract
The formation of polydopamine composite membranes at the water/air interface using different chemical strategies is reported. The use of either small molecules (urea, pyrocatechol) or polymers paves the way to understand which kind of compounds can be used for the formation of PDA-composite free-standing membranes produced at the water/air interface. On the basis of these screening results, we have found that alginate grafted with catechol groups allows the formation of robust free-standing films with asymmetric composition, stimuli-responsiveness, and self-healing properties. The stickiness of these membranes depends on the relative humidity, and its adhesion behavior on PDMS was characterized using the JKR method. Thus, alginate-catechol polydopamine films appear as a new class of PDA composites, mechanically robust through covalent cross-linking and based on fully biocompatible constituting partners. These results open the door to potential applications in the biomedical field.
- Published
- 2017
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21. Kinetics of deposition and stability of pyrocatechol -FeIII coordinated films.
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Meyer C, Ponzio F, Mathieu E, and Ball V
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- Electrochemical Techniques, Electrodes, Kinetics, Microscopy, Electron, Scanning, Spectrophotometry, Ultraviolet, Catechols chemistry, Ferric Compounds chemistry
- Abstract
Metal coordination between polyphenols and metal cations like Fe
3+ allows to produce conformal homogeneous and robust coatings on a vast variety of materials. The deposition kinetics and the stability of the obtained films are however only poorly investigated. In the present article it is shown that rough, granular but pinhole free coatings up to 50nm in thickness can be obtained in a one pot manner using pyrocatechol (Pyr)/Fe3+ mixtures at different stoichiometries (with Fe3+ /Pyr ratios equal to 0.55 or 1.10) provided the deposition time is extended up to 24h. More importantly, we show that these films are dissolved upon oxidation of Pyr in cyclic voltammetry experiments. When the films deposited during short durations are rinsed with buffer and subsequently re-exposed to Pyr containing solution, they undergo partial dissolution most probably through a ligand exchange process. Such a dissolution process does not occur anymore in the same conditions, when the deposition time is increased above 5h. All Pyr-Fe3+ based films can be stabilized by a post-deposition of a polyelectrolyte multilayer film based on the alternated adsorption of poly(allylamine hydrochloride) and the sodium salt of poly(styrene sulfonate). The deposition of 5 bilayers of these polyelectrolytes allows suppressing the dissolution of Pyr-Fe3+ based films produced for short deposition times., (Copyright © 2016 Elsevier B.V. All rights reserved.)- Published
- 2017
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22. Composite films of polydopamine-Alcian Blue for colored coating with new physical properties.
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Ponzio F, Bour J, and Ball V
- Subjects
- Oxidation-Reduction, Alcian Blue chemistry, Indoles chemistry, Membranes, Artificial, Polymers chemistry
- Abstract
Polydopamine (PDA) coatings appear as a universal functionalization methodology allowing to coat the surface of almost all kinds of known materials with a conformal, stable, robust and reactive material. Relatively few investigations were dedicated to the incorporation of other molecules in PDA coatings during their deposition from dopamine solutions under oxidative conditions. Herein we rely on the assumption that the basic building blocks of PDA could be porphyrin like tetramers (as well as higher order oligomers) of 5,6-dihydroxyindole and we investigate the influence of a cationic Cu(II) phtalocyanine, namely Alcian Blue (AB), on the deposition kinetics and on the properties of PDA films. We demonstrate that AB is indeed incorporated in the PDA films to yield a composite PDA-AB coating displaying the optical features of both PDA and AB. The amount of incorporated dye depends on its concentration in solution. The obtained PDA-AB films have a smaller thickness than their related PDA counterparts, a different morphology and a higher permeability to the anionic hexacyanoferrate redox probe. In addition, the incorporation of AB in the films is not homogeneous through their thickness as inferred by means of X-ray photoelectron spectroscopy. The reason for this interesting finding is discussed on the basis of the interactions between AB and PDA as well as on the basis of the structure of PDA films., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
23. Stable Bioactive Enzyme-Containing Multilayer Films Based on Covalent Cross-Linking from Mussel-Inspired Adhesives.
- Author
-
Longo J, Garnier T, Mateescu M, Ponzio F, Schaaf P, Jierry L, and Ball V
- Subjects
- Animals, Bivalvia chemistry, Bivalvia physiology, Cross-Linking Reagents chemistry, Enzyme Assays, Equipment Reuse, Freeze Drying, Glucuronic Acid chemistry, Hexuronic Acids chemistry, Kinetics, Periodic Acid chemistry, Adhesives chemistry, Alginates chemistry, Alkaline Phosphatase chemistry, Biomimetic Materials chemistry, Catechols chemistry, Enzymes, Immobilized chemistry
- Abstract
The use of immobilized enzymes is mandatory for the easy separation of the enzyme, the unreacted substrates, and the obtained products to allow repeated enzymatic assays without cumbersome purification steps. The immobilization procedure is however critical to obtain a high fraction of active enzyme. In this article, we present an enzyme immobilization strategy based on a catechol functionalized alginate. We demonstrate that alkaline phosphatase (ALP) remains active in multilayered films made with alginate modified with catechol moieties (AlgCat) for long duration, that is, up to 7 weeks, provided the multilayered architecture is cross-linked with sodium periodate. This cross-linking reaction allows to create covalent bonds between the amino groups of ALP and the quinone group carried by the modified alginate. In the absence of cross-linking, the enzymatic activity is rapidly lost and this reduction is mainly due to enzyme desorption. We also show that NaIO4 cross-linked (AlgCat-Alp)n films can be freeze-dried and reused at least 3 weeks later without lost in enzymatic activity.
- Published
- 2015
- Full Text
- View/download PDF
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