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The reality for conservation of biodiversity across our planet is that all ecosystems are modified by humans in some way or another. Thus, biodiversity conservation needs to be implemented in multifunctional landscapes. In this paper we use a fascinating coffee-dominated landscape in southwest Ethiopia as our lens to derive general lessons for biodiversity conservation in a post-wild world. Considering a hierarchy of scales from genes to multi-species interactions and social-ecological system contexts, we focus on (i) threats to the genetic diversity of crop wild relatives, (ii) the mechanisms behind trade-offs between biodiversity and agricultural yields, (iii) underexplored species interactions suppressing pest and disease levels, (iv) how the interactions of climate change and land-use change sometimes provide opportunities for restoration, and finally, (v) how to work closely with stakeholders to identify scenarios for sustainable development. The story on how the ecology and evolution of coffee within its indigenous distribution shape biodiversity conservation from genes to social-ecological systems can inspire us to view other landscapes with fresh eyes. The ubiquitous presence of human-nature interactions demands proactive, creative solutions to foster biodiversity conservation not only in remote protected areas but across entire landscapes inhabited by people.

Continued pressure and transformation of land-use by humans are key drivers of biodiversity and ecosystem services (ES) loss. To determine the sustainability of possible future land-use practices, it is important to anticipate likely future changes to biodiversity and ES. This can help stakeholders and decision-makers to understand and assess the viability of current development policies and design alternative future pathways. Focusing on a biodiversity hotspot in southwestern Ethiopia, we considered four future land-use scenarios (namely: ‘Gain over grain’, ‘Coffee and conservation’, ‘Mining green gold’ and ‘Food first’ scenarios) that were developed in an earlier project via participatory scenario planning. We modelled and mapped the spatial distribution of six ES (erosion control, carbon storage, coffee production, crop production, livestock feed, and woody-plant richness) for the current landscape and the four scenarios. Our results show that potential ES changes differed strongly across the scenarios. Changes were strongest for land-use scenarios involving large-scale agricultural intensification; and changes were not uniformly distributed across the landscape. Smallholder farmers specializing on cash crops (‘Gain over grain’ scenario) would likely cause little change to ES generation, but major losses in ES would result from expanding either food or coffee production (‘Mining green gold’ and ‘Food first’). Finally, the ‘Coffee and conservation’ scenario appears to be the most sustainable scenario because it would secure diverse ES for the long term. Our findings provide valuable input for decision-makers and stakeholders and could help to identify sustainable land-use options.

Conventional wisdom states that genetic variation reduces disease levels in plant populations. Nevertheless, crop species have been subject to a gradual loss of genetic variation through selection for specific traits during breeding, thereby increasing their vulnerability to biotic stresses such as pathogens. We explored how genetic variation in Arabica coffee sites in southwestern Ethiopia was related to the incidence of four major fungal diseases. Sixty sites were selected along a gradient of management intensity, ranging from nearly wild to intensively managed coffee stands. We used genotyping-by-sequencing of pooled leaf samples (pool-GBS) derived from 16 individual coffee shrubs in each of the 60 sites to assess the variation in genetic composition (multivariate: reference allele frequency) and genetic diversity (univariate: mean expected heterozygosity) between sites. We found that genetic composition had a clear spatial pattern and that genetic diversity was higher in less managed sites. The incidence of the four fungal diseases was related to the genetic composition of the coffee stands, but in a specific way for each disease. In contrast, genetic diversity was only related to the within-site variation of coffee berry disease, but not to the mean incidence of any of the four diseases across sites. Given that fungal diseases are major challenges of Arabica coffee in its native range, our findings that genetic composition of coffee sites impacted the major fungal diseases may serve as baseline information to study the molecular basis of disease resistance in coffee. Overall, our study illustrates the need to consider both host genetic composition and genetic diversity when investigating the genetic basis for variation in disease levels.

The multifunctional role of shade trees for conservation of biodiversity and ecosystem services in natural forests and agroforests is well documented, yet we lack insights into the impact of shade tree species identity on pest and disease dynamics on agroforestry crops such as coffee and cacao, and its implications for management. We conducted two surveys on the impact of shade tree species identity and canopy cover on pests, diseases and a fungal hyperparasite on Arabica coffee in southwestern Ethiopia, which is one of the areas of origin of Arabica coffee. One survey was in a commercial plantation, and the other along a management gradient from only little managed coffee growing in the natural forest to intensively managed commercial plantations. To link these findings to current shade tree selection criteria, we complemented these surveys by interviews with farmers and managers. Shade tree species identity left a weak imprint on insect pest levels, and insect pests levels differed strongly in the strength and direction of their response to canopy cover. In contrast to the insect pests, the incidence of coffee leaf rust and its hyperparasite, as well as coffee berry disease, differed among shade tree species, with particularly high levels of coffee leaf rust and the hyperparasite underneath the canopy of the shade trees Acacia abyssinica and Croton macrostachyus, and coffee berry disease underneath the canopy of Acacia abyssinica and Polyscias fulva. Smallholder farmers used many criteria for selecting shade trees, such as leaf traits and competition for soil moisture, but low priority is given to the effect of shade tree species identity on pests and diseases. Our findings help to understand spatial variation in pest and disease dynamics in natural forests and agroforests, and may inform the selection of shade tree species by coffee producers and thereby contribute to ecologically-informed pest and disease management. Importantly, our finding highlight the potent

Tropical agroforestry systems provide farmers with resources for their livelihoods, but are also well-recognized as refuges for biodiversity. However, the relationship between yield and biodiversity might be negative in these systems, reflecting a potential trade-off between managing for increased yield or biodiversity. The potential for synergies will depend partly on the shape of the biodiversity–yield relationship, where a concave relationship suggests a faster decline in biodiversity with increasing yields than a linear or convex shape. We studied the relationship between biodiversity (plant species richness and composition) and coffee yield along a gradient of management in south-western Ethiopia, coffee's native range. We inventoried species richness and community compoasition of woody plants, herbaceous plants and bryophytes at 60 sites. We also measured coffee management-related variables and assessed coffee yield for 3 consecutive years at each site. Species richness of woody plants had a concave relationship with coffee yield, that is, tree richness declined fast initially before levelling out at higher yields, whereas there was no relationship between coffee yield and species richness of herbaceous plants or bryophytes. Species composition of woody plants, herbaceous plants and bryophytes all had a concave relationship with coffee yield. From a methodological perspective, we found that multi-year data on yield were necessary to reliably assess the relationship between biodiversity and yield, and that the number of coffee shrubs or coffee dominance were poor proxies for yield when trying to capture the biodiversity–yield relationship. Synthesis and applications. The concave relationship between biodiversity components (species richness and composition) and yield suggests that there is a strong conflict between the goals of increasing production and conserving biodiversity. However, it is important to recognize that this pattern is largely driven by the ver

Low-altitude lakes in eastern Africa have long been investigated and have provided valuable information about the Late Quaternary paleohydrological evolution, such as the African Humid Period. However, records often suffer from poor age control, resolution, and/or ambiguous proxy interpretation, and only little focus has been put on high-altitude regions despite their sensitivity to global, regional, and local climate change phenomena. Here we report on Last Glacial environmental fluctuations at about 4000 m asl on the Sanetti Plateau in the Bale Mountains (SE Ethiopia), based on biogeochemical and palynological analyses of laminated lacustrine sediments. After deglaciation at about 18 cal kyr BP, a steppe-like herb-rich grassland with maximum Chenopodiaceae/Amaranthaceae and Plantago existed. Between 16.6 and 15.7 cal kyr BP, conditions were dry with a desiccation layer at ~ 16.3 cal kyr BP, documenting a temporary phase of maximum aridity on the plateau. While that local event lasted for only a few decades, concentrations of various elements (e.g. Zr, HF, Nb, Nd, and Na) started to increase and reached a maximum at ~ 15.8–15.7 cal kyr BP. We interpret those elements to reflect allochthonous, aeolian dust input via dry northerly winds and increasingly arid conditions in the lowlands. We suggest an abrupt versus delayed response at high and low altitudes, respectively, in response to Northern Hemispheric cooling events (the Heinrich Event 1). The delayed response at low altitudes might be caused by slow negative vegetation and monsoon feedbacks that make the ecosystem somewhat resilient. At ~ 15.7 cal kyr BP, our record shows an abrupt onset of the African Humid Period, almost 1000 years before the onset of the Bølling–Allerød warming in the North-Atlantic region, and about 300 years earlier than in the Lake Tana region. Erica pollen increased significantly between 14.4 and 13.6 cal kyr BP in agreement with periodically wet and regionally warm conditions. Similarly