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The most accurate calculation of nitrate concentration from the ultraviolet (UV) absorption spectrum of seawater requires that the absorption signal due to bromide in seawater be removed before nitrate concentrations are computed. Recent work suggests that the UV absorption spectrum of bromide in seawater has a pressure dependence. Neglect of this signal could add a bias when nitrate concentrations at high pressure are computed from UV measurements. Laboratory tests were conducted to determine the pressure dependence of the bromide absorption in seawater. Our results confirm the existence of a pressure coefficient in the bromide spectrum. The percentage change in bromide molar absorptivity is wavelength and temperature independent. The effect of pressure on the absorptivity of sea salt (ESW), which is dominated by bromide ion, can therefore be calculated as ESW pressure=ESW 1 dbar∗ (1 – 0.0 26 ∗ Pressure (dbar)/1000) The correction amounts to an error of around 0.95 μM nitrate at 1000 dbar. The pressure correction should be used in the calculations of nitrate concentrations from UV absorption spectra at high pressures. more...

The Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) program has begun deploying a large array of biogeochemical sensors on profiling floats in the Southern Ocean. As of February 2016, 86 floats have been deployed. Here the focus is on 56 floats with quality-controlled and adjusted data that have been in the water at least 6 months. The floats carry oxygen, nitrate, pH, chlorophyll fluorescence, and optical backscatter sensors. The raw data generated by these sensors can suffer from inaccurate initial calibrations and from sensor drift over time. Procedures to correct the data are defined. The initial accuracy of the adjusted concentrations is assessed by comparing the corrected data to laboratory measurements made on samples collected by a hydrographic cast with a rosette sampler at the float deployment station. The long-term accuracy of the corrected data is compared to the GLODAPv2 data set whenever a float made a profile within 20 km of a GLODAPv2 station. Based on these assessments, the fleet average oxygen data are accurate to 1 +/- 1%, nitrate to within 0.5 +/- 0.5 mu mol kg(-1), and pH to 0.005 +/- 0.007, where the error limit is 1 standard deviation of the fleet data. The bio-optical measurements of chlorophyll fluorescence and optical backscatter are used to estimate chlorophyll a and particulate organic carbon concentration. The particulate organic carbon concentrations inferred from optical backscatter appear accurate to with 35 mg C m(-3) or 20%, whichever is larger. Factors affecting the accuracy of the estimated chlorophyll a concentrations are evaluated. more...

Equimolar Tris (2-amino-2-hydroxymethyl-propane-1,3-diol) buffer prepared in artificial seawater media is a widely accepted pH standard for oceanographic pH measurements, though its change in pH over pressure is largely unknown. The change in volume (Δ V ) of dissociation reactions can be used to estimate the effects of pressure on the dissociation constant of weak acid and bases. The Δ V of Tris in seawater media of salinity 35 (Δ V Tris ⁎ ) was determined between 10 and 30 °C using potentiometry. The potentiometric cell consisted of a modified high pressure tolerant Ion Sensitive Field Effect Transistor pH sensor and a Chloride-Ion Selective Electrode directly exposed to solution. The effects of pressure on the potentiometric cell were quantified in aqueous HCl solution prior to measurements in Tris buffer. The experimentally determined Δ V Tris ⁎ were fitted to the equation Δ V Tris ⁎ = 4.528 + 0.04912 t where t is temperature in Celsius; the resultant fit agreed to experimental data within uncertainty of the measurements, which was estimated to be 0.9 cm − 3 mol − 1 . Using the results presented here, change in pH of Tris buffer due to pressure can be constrained to better than 0.003 at 200 bar, and can be expressed as: ∆ pH Tris = − 4.528 + 0.04912 t P ln 10 RT . where T is temperature in Kelvin, R is the universal gas constant (83.145 cm 3 bar K − 1 mol − 1 ), and P is gauge pressure in bar. On average, pH of Tris buffer changes by approximately − 0.02 at 200 bar. more...

Six profiling floats equipped with nitrate and oxygen sensors were deployed at Ocean Station P in the Gulf of Alaska. The resulting six calendar years and 10 float years of nitrate and oxygen data were used to determine an average annual cycle for net community production (NCP) in the top 35 m of the water column. NCP became positive in February as soon as the mixing activity in the surface layer began to weaken, but nearly 3 months before the traditionally defined mixed layer began to shoal from its winter time maximum. NCP displayed two maxima, one toward the end of May and another in August with a summertime minimum in June corresponding to the historical peak in mesozooplankton biomass. The average annual NCP was determined to be 1.5 ± 0.6 mol C m−2 yr−1 using nitrate and 1.5 ± 0.7 mol C m−2 yr−1 using oxygen. The results from oxygen data proved to be quite sensitive to the gas exchange model used as well as the accuracy of the oxygen measurement. Gas exchange models optimized for carbon dioxide flux generally ignore transport due to gas exchange through the injection of bubbles, and these models yield NCP values that are two to three time higher than the nitrate-based estimates. If nitrate and oxygen NCP rates are assumed to be related by the Redfield model, we show that the oxygen gas exchange model can be optimized by tuning the exchange terms to reproduce the nitrate NCP annual cycle. more...

A recent analysis of full water column hydrographic data revealed a pH-dependent discrepancy between spectrophotometrically measured pH using purified meta-cresol purple and pH calculated from dissolved inorganic carbon (DIC) and total alkalinity (TA). The discrepancy (pHspec – pHTA,DIC) is approximately −0.018 and 0.014 at pH 7.4 and 8.2, respectively. This discrepancy has a wide range of implications for marine inorganic carbon measurements, such as establishing robust calibration protocols for pH sensors operating on profiling floats. Here, we conducted a series of lab based experiments to assess the magnitude of pH-dependent errors for spectrophotometric pH measurements in seawater by directly comparing its performance to pH measured by an Ion Sensitive Field Effect Transistor (ISFET) pH sensor known to have Nernstian behavior. Natural seawater was titrated with high CO2 seawater while simultaneously measuring pH using spectrophotometry and an ISFET sensor over a large range in pH (7–8.5) and temperature (5–30 °C). The two pH measurements were consistent to better than ±0.003 (range) at all temperatures except at 5 and 10 °C and very low and high pH, where discrepancies were as large as ±0.005. These results demonstrate that pH-dependent errors in spectrophotometric pH measurements can be rejected as the cause of the pH-dependent discrepancy between pHspec and pHTA,DIC. The cause of this discrepancy is thus likely due to our incomplete understanding of the marine inorganic carbon model that could include errors in thermodynamic constants, concentrations of major ions in seawater, systematic biases in measurements of TA or DIC, or contributions of organic compounds that are not accounted for in the definition of total alkalinity. This should be a research priority for the inorganic carbon community. more...

Widespread contamination of surface water with nitrate-nitrogen (NO3-N) has led to increasing regulatory pressure to minimize NO3-N release from agricultural operations. We evaluated the use of wood chip denitrification bioreactors to remove NO3-N from tile drain effluent on two vegetable farms in Monterey County. Across several years of operation, denitrification in the bioreactors reduced NO3-N concentration by an average of 8 to 10 milligrams per liter (mg L−1) per day during the summer and approximately 5 mg L−1 per day in winter. However, due to the high NO3-N concentration in the tile drainage (60 to 190 mg L−1), water discharged from the bioreactors still contained NO3-N far above the regulatory target of < 10 mg L−1. Carbon enrichment (applying soluble carbon to stimulate denitrifying bacteria) using methanol as the carbon source substantially increased denitrification, both in laboratory experiments and in the on-farm bioreactors. Using a carbon enrichment system in which methanol was proportionally injected based on tile drainage NO3-N concentration allowed nearly complete NO3-N removal with minimal adverse environmental effects. more...

Increasing atmospheric carbon dioxide is driving a long-term decrease in ocean pH which is superimposed on daily to seasonal variability. These changes impact ecosystem processes, and they serve as a record of ecosystem metabolism. However, the temporal variability in pH is observed at only a few locations in the ocean because a ship is required to support pH observations of sufficient precision and accuracy. This paper describes a pressure tolerant Ion Sensitive Field Effect Transistor pH sensor that is based on the Honeywell Durafet ISFET die. When combined with a AgCl pseudoreference sensor that is immersed directly in seawater, the system is capable of operating for years at a time on platforms that cycle from depths of several km to the surface. The paper also describes the calibration scheme developed to allow calibrated pH measurements to be derived from the activity of HCl reported by the sensor system over the range of ocean pressure and temperature. Deployments on vertical profiling platforms enable self-calibration in deep waters where pH values are stable. Measurements with the sensor indicate that it is capable of reporting pH with an accuracy of 0.01 or better on the total proton scale and a precision over multiyear periods of 0.005. This system enables a global ocean observing system for ocean pH. more...