14 results on '"Loyn, R"'
Search Results
2. Fire responses by bird guilds and species in heathy dry forests in central Victoria, Australia
- Author
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Kuchinke, D, di Stefano, J, Loyn, R, Gell, P, Palmer, G, Kuchinke, D, di Stefano, J, Loyn, R, Gell, P, and Palmer, G
- Published
- 2023
3. Identifying cost-effective recovery actions for a critically endangered species
- Author
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Pritchard, RA, Kelly, EL, Biggs, JR, Everaardt, AN, Loyn, R, Magrath, MJL, Menkhorst, P, Hogg, CJ, Geary, William, Pritchard, RA, Kelly, EL, Biggs, JR, Everaardt, AN, Loyn, R, Magrath, MJL, Menkhorst, P, Hogg, CJ, and Geary, William
- Abstract
Threatened species managers are often required to make swift decisions in the face of considerable uncertainty. We tested a structured approach for evaluating conservation options for the critically endangered orange-bellied parrot. The Orange-bellied Parrot Recovery Team provides advice to government agencies to inform the allocation of a limited number of captive-bred birds to different release scenarios. Using a structured expert elicitation approach, we determined that scenarios where more fledglings were released were more cost-effective compared to other options. Following this finding in 2019, the recovery team adjusted plans and allocated additional birds to fledgling release, a response that contributed to an increase in wild birds migrating in 2020 and 2021. The challenges facing orange-bellied parrot conservation, including limitations in animals, time and resources, and high uncertainty, are common for threatened species recovery programs. Here we show that a structured process can help managers grapple with these complex trade-offs to make timely decisions.
- Published
- 2022
4. The conservation impacts of ecological disturbance: Time-bound estimates of population loss and recovery for fauna affected by the 2019-2020 Australian megafires
- Author
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Nolan, R, Legge, S, Rumpff, L, Woinarski, JCZ, Whiterod, NS, Ward, M, Southwell, DG, Scheele, BC, Nimmo, DG, Lintermans, M, Geyle, HM, Garnett, ST, Hayward-Brown, B, Ensbey, M, Ehmke, G, Ahyong, ST, Blackmore, CJ, Bower, DS, Brizuela-Torres, D, Burbidge, AH, Burns, PA, Butler, G, Catullo, R, Chapple, DG, Dickman, CR, Doyle, KE, Ferris, J, Fisher, D, Gallagher, R, Gillespie, GR, Greenlees, MJ, Hohnen, R, Hoskin, CJ, Hunter, D, Jolly, C, Kennard, M, King, A, Kuchinke, D, Law, B, Lawler, I, Lawler, S, Loyn, R, Lunney, D, Lyon, J, MacHunter, J, Mahony, M, Mahony, S, McCormack, RB, Melville, J, Menkhorst, P, Michael, D, Mitchell, N, Mulder, E, Newell, D, Pearce, L, Raadik, TA, Rowley, JJL, Sitters, H, Spencer, R, Valavi, R, West, M, Wilkinson, DP, Zukowski, S, Nolan, R, Legge, S, Rumpff, L, Woinarski, JCZ, Whiterod, NS, Ward, M, Southwell, DG, Scheele, BC, Nimmo, DG, Lintermans, M, Geyle, HM, Garnett, ST, Hayward-Brown, B, Ensbey, M, Ehmke, G, Ahyong, ST, Blackmore, CJ, Bower, DS, Brizuela-Torres, D, Burbidge, AH, Burns, PA, Butler, G, Catullo, R, Chapple, DG, Dickman, CR, Doyle, KE, Ferris, J, Fisher, D, Gallagher, R, Gillespie, GR, Greenlees, MJ, Hohnen, R, Hoskin, CJ, Hunter, D, Jolly, C, Kennard, M, King, A, Kuchinke, D, Law, B, Lawler, I, Lawler, S, Loyn, R, Lunney, D, Lyon, J, MacHunter, J, Mahony, M, Mahony, S, McCormack, RB, Melville, J, Menkhorst, P, Michael, D, Mitchell, N, Mulder, E, Newell, D, Pearce, L, Raadik, TA, Rowley, JJL, Sitters, H, Spencer, R, Valavi, R, West, M, Wilkinson, DP, and Zukowski, S
- Abstract
Aim: After environmental disasters, species with large population losses may need urgent protection to prevent extinction and support recovery. Following the 2019–2020 Australian megafires, we estimated population losses and recovery in fire-affected fauna, to inform conservation status assessments and management. Location: Temperate and subtropical Australia. Time period: 2019–2030 and beyond. Major taxa: Australian terrestrial and freshwater vertebrates; one invertebrate group. Methods: From > 1,050 fire-affected taxa, we selected 173 whose distributions substantially overlapped the fire extent. We estimated the proportion of each taxon’s distribution affected by fires, using fire severity and aquatic impact mapping, and new distribution mapping. Using expert elicitation informed by evidence of responses to previous wildfires, we estimated local population responses to fires of varying severity. We combined the spatial and elicitation data to estimate overall population loss and recovery trajectories, and thus indicate potential eligibility for listing as threatened, or uplisting, under Australian legislation. Results: We estimate that the 2019–2020 Australian megafires caused, or contributed to, population declines that make 70–82 taxa eligible for listing as threatened; and another 21–27 taxa eligible for uplisting. If so-listed, this represents a 22–26% increase in Australian statutory lists of threatened terrestrial and freshwater vertebrates and spiny crayfish, and uplisting for 8–10% of threatened taxa. Such changes would cause an abrupt worsening of underlying trajectories in vertebrates, as measured by Red List Indices. We predict that 54–88% of 173 assessed taxa will not recover to pre-fire population size within 10 years/three generations. Main conclusions: We suggest the 2019–2020 Australian megafires have worsened the conservation prospects for many species. Of the 91 taxa recommended for listing/uplisting consideration, 84 are now under formal review
- Published
- 2022
5. The conservation impacts of ecological disturbance: Time-bound estimates of population loss and recovery for fauna affected by the 2019–2020 Australian megafires
- Author
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Legge, S., Rumpff, L., Woinarski, J.C.Z., Whiterod, N.S., Ward, M., Southwell, D.G., Scheele, B.C., Nimmo, D.G., Lintermans, M., Geyle, H.M., Garnett, S.T., Hayward-Brown, B., Ensbey, M., Ehmke, G., Ahyong, S.T., Blackmore, C.J., Bower, D.S., Brizuela-Torres, Diego, Burbidge, A.H., Burns, P.A., Butler, G., Catullo, R., Chapple, D.G., Dickman, C.R., Doyle, K.E., Ferris, J., Fisher, D., Gallagher, R., Gillespie, G.R., Greenlees, M.J., Hohnen, R., Hoskin, C.J., Hunter, D., Jolly, C., Kennard, M., King, A., Kuchinke, D., Law, B., Lawler, I., Lawler, S., Loyn, R., Lunney, D., Lyon, J., MacHunter, J., Mahony, M., Mahony, S., McCormack, R.B., Melville, J., Menkhorst, P., Michael, D., Mitchell, M., Mulder, E., Newell, D., Pearce, L., Raadik, T.A., Rowley, J.J.L., Sitters, H., Spencer, R., Valavi, R., West, M., Wilkinson, D.P., Zukowski, S., Legge, S., Rumpff, L., Woinarski, J.C.Z., Whiterod, N.S., Ward, M., Southwell, D.G., Scheele, B.C., Nimmo, D.G., Lintermans, M., Geyle, H.M., Garnett, S.T., Hayward-Brown, B., Ensbey, M., Ehmke, G., Ahyong, S.T., Blackmore, C.J., Bower, D.S., Brizuela-Torres, Diego, Burbidge, A.H., Burns, P.A., Butler, G., Catullo, R., Chapple, D.G., Dickman, C.R., Doyle, K.E., Ferris, J., Fisher, D., Gallagher, R., Gillespie, G.R., Greenlees, M.J., Hohnen, R., Hoskin, C.J., Hunter, D., Jolly, C., Kennard, M., King, A., Kuchinke, D., Law, B., Lawler, I., Lawler, S., Loyn, R., Lunney, D., Lyon, J., MacHunter, J., Mahony, M., Mahony, S., McCormack, R.B., Melville, J., Menkhorst, P., Michael, D., Mitchell, M., Mulder, E., Newell, D., Pearce, L., Raadik, T.A., Rowley, J.J.L., Sitters, H., Spencer, R., Valavi, R., West, M., Wilkinson, D.P., and Zukowski, S.
- Abstract
Aim After environmental disasters, species with large population losses may need urgent protection to prevent extinction and support recovery. Following the 2019–2020 Australian megafires, we estimated population losses and recovery in fire-affected fauna, to inform conservation status assessments and management. Location Temperate and subtropical Australia. Time period 2019–2030 and beyond. Major taxa Australian terrestrial and freshwater vertebrates; one invertebrate group. Methods From > 1,050 fire-affected taxa, we selected 173 whose distributions substantially overlapped the fire extent. We estimated the proportion of each taxon’s distribution affected by fires, using fire severity and aquatic impact mapping, and new distribution mapping. Using expert elicitation informed by evidence of responses to previous wildfires, we estimated local population responses to fires of varying severity. We combined the spatial and elicitation data to estimate overall population loss and recovery trajectories, and thus indicate potential eligibility for listing as threatened, or uplisting, under Australian legislation. Results We estimate that the 2019–2020 Australian megafires caused, or contributed to, population declines that make 70–82 taxa eligible for listing as threatened; and another 21–27 taxa eligible for uplisting. If so-listed, this represents a 22–26% increase in Australian statutory lists of threatened terrestrial and freshwater vertebrates and spiny crayfish, and uplisting for 8–10% of threatened taxa. Such changes would cause an abrupt worsening of underlying trajectories in vertebrates, as measured by Red List Indices. We predict that 54–88% of 173 assessed taxa will not recover to pre-fire population size within 10 years/three generations. Main conclusions We suggest the 2019–2020 Australian megafires have worsened the conservation prospects for many species. Of the 91 taxa recommended for listing/uplisting consideration, 84 a
- Published
- 2022
6. Prescribed burn severity has minimal effect on common bird species in a fire-prone forest ecosystem
- Author
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Kuchinke, D, Di Stefano, J, Sitters, H, Loyn, R, Gell, P, Palmer, G, Kuchinke, D, Di Stefano, J, Sitters, H, Loyn, R, Gell, P, and Palmer, G
- Abstract
Prescribed burning is widely used to mitigate the effects of severe fires across the landscape and to maintain biodiversity. Just like wildfires, the severity of prescribed burns can vary; this study was an opportunistic investigation. In one fortnight during autumn months of 2012, several prescribed burns were carried out in heathy-dry forests of central Victoria, Australia. We used measurements of canopy scorch, bark burn and ground cover burn to calculate a severity score for each site. The severity scores across sites ranged from low (2.5) to high (10). A before-after control-impact (BACI) design was utilised to model the potential impacts of fire and fire severity on birds. We used generalised linear mixed models (GLMM’s), and incorporated first- and second-year post-fire spring/summer observations from 2012 to 2014, against bird data from observations carried out in 2010. The total combined abundances of individual species showed that broadly, bird abundance rebounded to pre-burn levels by the second spring post-fire. There was little response detected in either species richness or turnover. The muted turnover result aligns to other studies that indicate a scarcity of early-successional-stage species in eucalyptus forests and woodlands that rapidly regenerate post-fire. Ten individual species were also examined, and only one species, the White-throated Treecreeper (Cormobates leucophaea), responded to both fire and its severity. The BACI design was informative in illustrating that while the forest birds were resilient to small-scale prescribed burns of any severity, abundances in general may have been in decline, a result aligning with the years of reduced rainfall in the region.
- Published
- 2020
7. Metrics of progress in the understanding and management of threats to Australian birds
- Author
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Garnett, S. T., primary, Butchart, S. H. M., additional, Baker, G. B., additional, Bayraktarov, E., additional, Buchanan, K. L., additional, Burbidge, A. A., additional, Chauvenet, A. L. M., additional, Christidis, L., additional, Ehmke, G., additional, Grace, M., additional, Hoccom, D. G., additional, Legge, S. M., additional, Leiper, I., additional, Lindenmayer, D. B., additional, Loyn, R. H., additional, Maron, M., additional, McDonald, P., additional, Menkhorst, P., additional, Possingham, H. P., additional, Radford, J., additional, Reside, A. E., additional, Watson, D. M., additional, Watson, J. E. M., additional, Wintle, B., additional, Woinarski, J. C. Z., additional, and Geyle, H. M., additional
- Published
- 2018
- Full Text
- View/download PDF
8. Vertebrates and plants show common responses to forest fires and climate gradients but species, scale and data type matter
- Author
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Kelly, L, Haslem, A, Leonard, S, Bassett, M, Bennett, A, Bruce, M, Clarke, M, Chia, E, Christie, F, Di Stefano, J, Holland, G, Loyn, R, MacHunter, J, McCarthy, M, Pung, A, Robinson, N, Sitters, H, Swan, M, YORK, A, Kelly, L, Haslem, A, Leonard, S, Bassett, M, Bennett, A, Bruce, M, Clarke, M, Chia, E, Christie, F, Di Stefano, J, Holland, G, Loyn, R, MacHunter, J, McCarthy, M, Pung, A, Robinson, N, Sitters, H, Swan, M, and YORK, A
- Published
- 2017
9. Fire regimes and environmental gradients shape vertebrate and plant distributions in temperate eucalypt forests
- Author
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Kelly, LT, Haslem, A, Holland, GJ, Leonard, SWJ, MacHunter, J, Bassett, M, Bennett, AF, Bruce, MJ, Chia, EK, Christie, FJ, Clarke, MF, Di Stefano, J, Loyn, R, McCarthy, MA, Pung, A, Robinson, N, Sitters, H, Swan, M, York, A, Kelly, LT, Haslem, A, Holland, GJ, Leonard, SWJ, MacHunter, J, Bassett, M, Bennett, AF, Bruce, MJ, Chia, EK, Christie, FJ, Clarke, MF, Di Stefano, J, Loyn, R, McCarthy, MA, Pung, A, Robinson, N, Sitters, H, Swan, M, and York, A
- Abstract
Fire is a global driver of ecosystem structure, function, and change. Problems common to fire scientists and managers worldwide include a limited knowledge of how multiple taxonomic groups within a given ecosystem respond to recurrent fires, and how interactions between fire regimes and environmental gradients influence biodiversity. We tested six hypotheses relating to fire regimes and environmental gradients in forest ecosystems using data on birds (493 sites), mammals (175 sites), and vascular plants (615 sites) systematically collected in dry eucalypt forests in southeastern Australia. We addressed each of these hypotheses by fitting species distribution models which differed in the environmental variables used, the spatial extent of the data, or the type of response data. We found (1) as predicted, fire interacted with environmental gradients and shaped species distributions, but there was substantial variation between species; (2) multiple characteristics of fire regimes influenced the distribution of forest species; (3) common to vertebrates and plants was a strong influence of temperature and rainfall gradients, but contrary to predictions, inter‐fire interval was the most influential component of the fire regime on both taxonomic groups; (4) mixed support for the hypothesis that fire would be a stronger influence on species occurrence at a smaller spatial extent; only for vertebrates did scale have an effect in the direction expected; (5) as predicted, vertebrates closely associated with direct measures of habitat structure were those most strongly influenced by fire regimes; and (6) the modeled fire responses for birds were sensitive to the use of either presence–absence or abundance data. These results underscore the important insights that can be gained by modeling how fire regimes, not just fire events, influence biota in forests. Our work highlights the need for management of fire regimes to be complemented by an understanding of the underlying environ
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- 2017
10. Foothills Fire and Biota
- Author
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Leonard, S, Bruce, M, Christie, F, Di Stefano, J, Haslem, A, Holland, G, Kelly, L, Loyn, R, MacHunter, J, Rumpff, L, Stamation, K, Bennett, A, Clarke, M, YORK, A, Leonard, S, Bruce, M, Christie, F, Di Stefano, J, Haslem, A, Holland, G, Kelly, L, Loyn, R, MacHunter, J, Rumpff, L, Stamation, K, Bennett, A, Clarke, M, and YORK, A
- Published
- 2016
11. Presence and antimicrobial resistance profiles of Escherichia coli, Enterococcusspp. and Salmonellasp. in 12 species of Australian shorebirds and terns.
- Author
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Smith HG, Bean DC, Clarke RH, Loyn R, Larkins JA, Hassell C, and Greenhill AR
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- Animals, Anti-Bacterial Agents pharmacology, Australia epidemiology, Birds microbiology, Drug Resistance, Bacterial genetics, Escherichia coli, Feces microbiology, Humans, Charadriiformes, Escherichia coli Infections epidemiology, Escherichia coli Infections microbiology, Escherichia coli Infections veterinary
- Abstract
Antibiotic resistance is an ongoing threat to both human and animal health. Migratory birds are a potential vector for the spread of novel pathogens and antibiotic resistance genes. To date, there has been no comprehensive study investigating the presence of antibiotic resistance (AMR) in the bacteria of Australian shorebirds or terns. In the current study, 1022 individual birds representing 12 species were sampled across three states of Australia (Victoria, South Australia, and Western Australia) and tested for the presence of phenotypically resistant strains of three bacteria with potential to be zoonotic pathogens; Escherichia coli, Enterococcusspp., and Salmonellasp. In total, 206 E. coli, 266 Enterococcusspp., and 20 Salmonellasp. isolates were recovered, with AMR detected in 42% of E. coli, 85% of Enterococcusspp., and 10% of Salmonellasp. Phenotypic resistance was commonly detected to erythromycin (79% of Enterococcusspp.), ciprofloxacin (31% of Enterococcusspp.) and streptomycin (21% of E. coli). Resident birds were more likely to carry AMR bacteria than migratory birds (p ≤ .001). Bacteria isolated from shorebirds and terns are commonly resistant to at least one antibiotic, suggesting that wild bird populations serve as a potential reservoir and vector for AMR bacteria. However, globally emerging phenotypes of multidrug-resistant bacteria were not detected in Australian shorebirds. This study provides baseline data of the carriage of AMR bacteria in Australian shorebirds and terns., (© 2022 The Authors. Zoonoses and Public Health published by Wiley-VCH GmbH.)
- Published
- 2022
- Full Text
- View/download PDF
12. Draft Genome Sequences of Four Citrobacter Isolates Recovered from Wild Australian Shorebirds.
- Author
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Smith HGP, Bean DC, Pitchers W, Valcanis M, Clarke RH, Loyn R, Hassell CJ, and Greenhill AR
- Abstract
Citrobacter is a ubiquitous bacterial genus whose members inhabit a variety of niches. Some species are clinically important for both antimicrobial resistance (AMR) carriage and as the cause of nosocomial infections. Surveillance of Citrobacter species in the environment can provide indicators of the spread of AMR genes outside clinical spaces. In this study, we present draft genome sequences of four Citrobacter isolates obtained from three species of wild Australian shorebirds., (Copyright © 2021 Smith et al.)
- Published
- 2021
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13. Salmonella enterica Serovar Hvittingfoss in Bar-Tailed Godwits (Limosa lapponica) from Roebuck Bay, Northwestern Australia.
- Author
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Smith HG, Bean DC, Hawkey J, Clarke RH, Loyn R, Larkins JA, Hassell C, Valcanis M, Pitchers W, and Greenhill AR
- Subjects
- Animals, Bird Diseases microbiology, Female, Incidence, Male, Prevalence, Salmonella Infections, Animal microbiology, Serogroup, Western Australia epidemiology, Bird Diseases epidemiology, Charadriiformes, Salmonella Infections, Animal epidemiology, Salmonella enterica isolation & purification
- Abstract
Salmonella enterica serovar Hvittingfoss is an important foodborne serotype of Salmonella , being detected in many countries where surveillance is conducted. Outbreaks can occur, and there was a recent multistate foodborne outbreak in Australia. S Hvittingfoss can be found in animal populations, though a definitive animal host has not been established. Six species of birds were sampled at Roebuck Bay, a designated Ramsar site in northwestern Australia, resulting in 326 cloacal swabs for bacterial culture. Among a single flock of 63 bar-tailed godwits ( Limosa lapponica menzbieri ) caught at Wader Spit, Roebuck Bay, in 2018, 17 (27%) were culture positive for Salmonella All other birds were negative for Salmonella The isolates were identified as Salmonella enterica serovar Hvittingfoss. Phylogenetic analysis revealed a close relationship between isolates collected from godwits and the S Hvittingfoss strain responsible for a 2016 multistate foodborne outbreak originating from tainted cantaloupes (rock melons) in Australia. While it is not possible to determine how this strain of S Hvittingfoss was introduced into the bar-tailed godwits, these findings show that wild Australian birds are capable of carrying Salmonella strains of public health importance. IMPORTANCE Salmonella is a zoonotic pathogen that causes gastroenteritis and other disease presentations in both humans and animals. Serovars of S. enterica commonly cause foodborne disease in Australia and globally. In 2016-2017, S Hvittingfoss was responsible for an outbreak that resulted in 110 clinically confirmed human cases throughout Australia. The origin of the contamination that led to the outbreak was never definitively established. Here, we identify a migratory shorebird, the bar-tailed godwit, as an animal reservoir of S Hvittingfoss. These birds were sampled in northwestern Australia during their nonbreeding period. The presence of a genetically similar S Hvittingfoss strain circulating in a wild bird population, 2 years after the 2016-2017 outbreak and ∼1,500 km from the suspected source of the outbreak, demonstrates a potentially unidentified environmental reservoir of S Hvittingfoss. While the birds cannot be implicated in the outbreak that occurred 2 years prior, this study does demonstrate the potential role for wild birds in the transmission of this important foodborne pathogen., (Copyright © 2020 American Society for Microbiology.)
- Published
- 2020
- Full Text
- View/download PDF
14. Avian influenza infection dynamics under variable climatic conditions, viral prevalence is rainfall driven in waterfowl from temperate, south-east Australia.
- Author
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Ferenczi M, Beckmann C, Warner S, Loyn R, O'Riley K, Wang X, and Klaassen M
- Subjects
- Animals, Feces virology, Influenza in Birds virology, Population Density, Prevalence, Seasons, Victoria epidemiology, Animals, Wild, Ducks, Influenza A virus physiology, Influenza in Birds epidemiology, Rain
- Abstract
Understanding Avian Influenza Virus (AIV) infection dynamics in wildlife is crucial because of possible virus spill over to livestock and humans. Studies from the northern hemisphere have suggested several ecological and environmental drivers of AIV prevalence in wild birds. To determine if the same drivers apply in the southern hemisphere, where more irregular environmental conditions prevail, we investigated AIV prevalence in ducks in relation to biotic and abiotic factors in south-eastern Australia. We sampled duck faeces for AIV and tested for an effect of bird numbers, rainfall anomaly, temperature anomaly and long-term ENSO (El-Niño Southern Oscillation) patterns on AIV prevalence. We demonstrate a positive long term effect of ENSO-related rainfall on AIV prevalence. We also found a more immediate response to rainfall where AIV prevalence was positively related to rainfall in the preceding 3-7 months. Additionally, for one duck species we found a positive relationship between their numbers and AIV prevalence, while prevalence was negatively or not affected by duck numbers in the remaining four species studied. In Australia largely non-seasonal rainfall patterns determine breeding opportunities and thereby influence bird numbers. Based on our findings we suggest that rainfall influences age structures within populations, producing an influx of immunologically naïve juveniles within the population, which may subsequently affect AIV infection dynamics. Our study suggests that drivers of AIV dynamics in the northern hemisphere do not have the same influence at our south-east Australian field site in the southern hemisphere due to more erratic climatological conditions.
- Published
- 2016
- Full Text
- View/download PDF
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