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All animals, including you, need oxygen to breathe. Many kinds of tiny microorganisms (microbes) also need oxygen. But some microbes have a superpower: they can breathe a different element called nitrogen! This means they can live in areas where there is no oxygen. But where are these areas? We wanted to figure out where these superpowered nitrogen-breathing microbes live in the ocean. In this article, we describe how we found a new way to estimate these areas. We made a map of the world that points out the areas in the deep ocean where nitrogen-breathing microbes are likely to live. Our work will help us to understand the role that nitrogen-breathing microbes play in the regulation of Earth’s climate.

The expansive gyres of the subtropical ocean account for a significant fraction of global organic carbon export from the upper ocean. In the gyre interior, vertical mixing and the heaving of nutrient-rich waters into the euphotic layer sustain local productivity, in turn depleting the layers below. However, the nutrient pathways by which these subeuphotic layers are themselves replenished remain unclear. Using a global, eddy-permitting simulation of ocean physics and biogeochemistry, we quantify nutrient resupply mechanisms along and across density surfaces, including the contribution of eddy-scale motions that are challenging to observe. We find that mesoscale eddies (10 to 100 km) flux nutrients from the shallow flanks of the gyre into the recirculating interior, through time-varying motions along density surfaces. The subeuphotic layers are ultimately replenished in approximately equal contributions by this mesoscale eddy transport and the remineralization of sinking particles. The mesoscale eddy resupply is most important in the lower thermocline for the whole subtropical region but is dominant at all depths within the gyre interior. Subtropical gyre productivity may therefore be sustained by a nutrient relay, where the lateral transport resupplies nutrients to the thermocline and allows vertical exchanges to maintain surface biological production and carbon export.

Anaerobic microbial activity in the ocean causes losses of bioavailable nitrogen and emission of nitrous oxide to the atmosphere, but its predictability at global scales remains limited. Resource ratio theory suggests that anaerobic activity becomes sustainable when the ratio of oxygen to organic matter supply is below the ratio required by aerobic metabolisms. Here, we demonstrate the relevance of this framework at the global scale using three-dimensional ocean datasets, providing a new interpretation of existing observations. Evaluations of the location and extent of anoxic zones and a diagnostic rate of pelagic nitrogen loss are consistent with previous estimates. However, we demonstrate that a threshold based on substrate-supply fluxes is qualitatively different from a threshold based solely on the ambient oxygen concentration. This implies that use of the flux-based threshold in global biogeochemical models can result in different predictions of anaerobic activity and nitrogen loss.

© 2021. The Authors. Anaerobic microbial activity in the ocean causes losses of bioavailable nitrogen and emission of nitrous oxide to the atmosphere, but its predictability at global scales remains limited. Resource ratio theory suggests that anaerobic activity becomes sustainable when the ratio of oxygen to organic matter supply is below the ratio required by aerobic metabolisms. Here, we demonstrate the relevance of this framework at the global scale using three-dimensional ocean datasets, providing a new interpretation of existing observations. Evaluations of the location and extent of anoxic zones and a diagnostic rate of pelagic nitrogen loss are consistent with previous estimates. However, we demonstrate that a threshold based on substrate-supply fluxes is qualitatively different from a threshold based solely on the ambient oxygen concentration. This implies that use of the flux-based threshold in global biogeochemical models can result in different predictions of anaerobic activity and nitrogen loss.

The Southern Ocean plays a pivotal role in climate change by exchanging heat and carbon, and provides the primary window for the global deep ocean to communicate with the atmosphere. There has been a widespread focus on explaining atmospheric CO2 changes in terms of changes in wind forcing in the Southern Ocean. Here, we develop a dynamically-motivated metric, the residual upwelling, that measures the primary effect of Southern Ocean dynamics on atmospheric CO2 on centennial to millennial timescales by determining the communication with the deep ocean. The metric encapsulates the combined, net effect of winds and air–sea buoyancy forcing on both the upper and lower overturning cells, which have been invoked as explaining atmospheric CO2 changes for the present day and glacial-interglacial changes. The skill of the metric is assessed by employing suites of idealized ocean model experiments, including parameterized and explicitly simulated eddies, with online biogeochemistry and integrated for 10,000 years to equilibrium. Increased residual upwelling drives elevated atmospheric CO2 at a rate of typically 1–1.5 parts per million/106 m3 s−1 by enhancing the communication between the atmosphere and deep ocean. This metric can be used to interpret the long-term effect of Southern Ocean dynamics on the natural carbon cycle and atmospheric CO2, alongside other metrics, such as involving the proportion of preformed nutrients and the extent of sea ice cover.