114 results on '"Karlsson, G."'
Search Results
2. Design of a Canted-cosine-theta orbit corrector for the High Luminosity LHC
- Author
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Pepitone, K., Kirby, G., Ruber, R., Ahl, A., Canale, M., Dugic, I., Gentini, L., Johansson, M., Karlsson, G., Kovacikova, J., Lindström, J., Olsson, A., and Olvegård, M.
- Subjects
Physics - Accelerator Physics - Abstract
The High Luminosity LHC requires dipole orbit correctors grouped in double aperture magnet assemblies. They provide a field of 3.1 T at 100 A in an aperture of 70 mm. The current standard design is a classical cosine-theta layout made with ribbon cable. However, the electric insulation of the ribbon cable is not radiation-resistant enough to withstand the radiation load expected in the coming years of LHC operation. A new design, based on a radiation-resistant cable with polyimide insulator, that can replace the existing orbit correctors at their end-of-life, is needed. The challenge is to design a magnet that fits directly into the existing positions and that can operate with the same busbars, passive quench protection, and power supplies as existing magnets. We propose a self-protected canted-cosine-theta (CCT) design. We take the opportunity to explore new concepts for the CCT design to produce a cost-effective and high-quality design with a more sustainable use of resources. The new orbit corrector design meets high requirements on the field quality while keeping within the same mechanical volume and maximum excitation current. A collaboration of Swedish universities and Swedish industry has been formed for the development and production of a prototype magnet following a concurrent engineering (CE) methodology to reduce the time needed to produce a functional CCT magnet. The magnet has a 1 m long CCT dipole layout consisting of two coils. The superconductor is a commercially available 0.33 mm wire with polyimide insulation in a 6-around-1 cable. The channels in the coil formers, that determine the CCT layout, allow for 2 x 5 cable layers. A total of 70 windings makes that the coil current can be kept below 100 A. We will present the detailed design and preliminary quench simulations.
- Published
- 2022
- Full Text
- View/download PDF
3. Atmospheric deposition and soil water chemistry in Swedish forests since 1985 – Effects of reduced emissions of sulphur and nitrogen
- Author
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Pihl Karlsson, G., Akselsson, C., Hellsten, S., and Karlsson, P.E.
- Published
- 2024
- Full Text
- View/download PDF
4. Optimization of droplet digital PCR assays for the type-specific detection and quantification of five HPV genotypes, including additional data on viral loads of nine different HPV genotypes in cervical carcinomas
- Author
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Malin, Kaliff, Louise, Bohr Mordhorst, Gisela, Helenius, Mats, Karlsson G., and Gabriella, Lillsunde-Larsson
- Published
- 2021
- Full Text
- View/download PDF
5. Modeling Results of the Quench Behavior of a Nb-Ti Canted-Cosine-Theta Corrector Magnet for LHC
- Author
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Bagni, Tommaso, Ahl, A., Almström, M., Canale, M., Dugic, I., Emilsson, F., Gentini, L., Haralanova, V., Johansson, M., Karlsson, G., Kennborn, B., Kirby, G., Kovacikova, J., Lindström, J., Pepitone, Kevin, Pettersson, Mikael, Olsson, A., Ruber, Roger, Santiago-Kern, Rocio, Svanberg, Carl, Olvegård, Maja, Bagni, Tommaso, Ahl, A., Almström, M., Canale, M., Dugic, I., Emilsson, F., Gentini, L., Haralanova, V., Johansson, M., Karlsson, G., Kennborn, B., Kirby, G., Kovacikova, J., Lindström, J., Pepitone, Kevin, Pettersson, Mikael, Olsson, A., Ruber, Roger, Santiago-Kern, Rocio, Svanberg, Carl, and Olvegård, Maja
- Abstract
A newly designed superconducting magnet of the Canted-Cosine-Theta (CCT) type was developed as a result of a collaboration between Swedish universities (Uppsala and Linneaus) and Swedish industries. This magnet was designed to function as a replacement of the present LHC orbit corrector magnets, which are approaching their end of life due to the radiation load. As a result, the new CCT magnet was developed to be more radiation tolerant and to constitute a one-to-one replacement to the currently installed version, which is a 1 m long 70 mm double aperture dipole magnet. The final magnet, which is currently under construction, will be tested at FREIA laboratory at Uppsala University and generate a magnetic field of 3.3 T and an integrated field of 2.8 Tm at about 85 A. To examine the magnet quench behavior and to identify a suitable quench protection system, the 3D electro-magnetic and thermal behavior of the coil was modeled using the RAT-Raccoon software. Based on the simulation results, a Metrosil varistor was selected to protect the magnet during the test. In this article, we report the results of the numerical analysis. The magnet model is equipped with a spot heater to initialize the quench and the temperature and voltages are monitored during the avalanche effect. The simulated current decay and the hot-spot temperature are analyzed with a focus on the impact of quench-back on the magnet protection.
- Published
- 2024
- Full Text
- View/download PDF
6. Total deposition of inorganic nitrogen to Norway spruce forests – Applying a surrogate surface method across a deposition gradient in Sweden
- Author
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Karlsson, P.E., Pihl Karlsson, G., Hellsten, S., Akselsson, C., Ferm, M., and Hultberg, H.
- Published
- 2019
- Full Text
- View/download PDF
7. Wet deposition of ammonium, nitrate and non-sea-salt sulphate in Sweden 1955 through 2017
- Author
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Ferm, M., Granat, L., Engardt, M., Pihl Karlsson, G., Danielsson, H., Karlsson, P.E., and Hansen, K.
- Published
- 2019
- Full Text
- View/download PDF
8. Modeling Results of the Quench Behavior of a Nb-Ti Canted-Cosine-Theta Corrector Magnet for LHC
- Author
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Bagni, T., Ahl, A., Almstrom, M., Canale, M., Dugic, I., Emilsson, F., Gentini, L., Haralanova, V., Johansson, M., Karlsson, G., Kennborn, B., Kirby, G., Kovacikova, J., Lindstrom, J., Pepitone, K., Pettersson, M., Olsson, A., Ruber, R., Santiago Kern, Rocio, Svanberg, C., and Olvegard, M.
- Abstract
A newly designed superconducting magnet of the Canted-Cosine-Theta (CCT) type was developed as a result of a collaboration between Swedish universities (Uppsala and Linneaus) and Swedish industries. This magnet was designed to function as a replacement of the present LHC orbit corrector magnets, which are approaching their end of life due to the radiation load. As a result, the new CCT magnet was developed to be more radiation tolerant and to constitute a one-to-one replacement to the currently installed version, which is a 1 m long 70 mm double aperture dipole magnet. The final magnet, which is currently under construction, will be tested at FREIA laboratory at Uppsala University and generate a magnetic field of 3.3 T and an integrated field of 2.8 Tm at about 85 A. To examine the magnet quench behavior and to identify a suitable quench protection system, the 3D electro-magnetic and thermal behavior of the coil was modeled using the RAT-Raccoon software. Based on the simulation results, a Metrosil varistor was selected to protect the magnet during the test. In this article, we report the results of the numerical analysis. The magnet model is equipped with a spot heater to initialize the quench and the temperature and voltages are monitored during the avalanche effect. The simulated current decay and the hot-spot temperature are analyzed with a focus on the impact of quench-back on the magnet protection.
- Published
- 2024
- Full Text
- View/download PDF
9. Design and Fabrication of a Canted-Cosine-Theta Double Aperture Orbit Corrector Dipole for the LHC
- Author
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Pepitone, K., primary, Kirby, G., additional, Olvegard, M., additional, Ahl, A., additional, Almstrom, M., additional, Dugic, I., additional, Emilsson, F., additional, Haralanova, V., additional, Johansson, M., additional, Karlsson, G., additional, Kennborn, B., additional, Kovacikova, J., additional, Lindstrom, J., additional, Olsson, A., additional, Pettersson, M., additional, and Ruber, R., additional
- Published
- 2023
- Full Text
- View/download PDF
10. Design and Fabrication of a Canted-Cosine-Theta Double Aperture Orbit Corrector Dipole for the LHC
- Author
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Pepitone, Kevin, Kirby, G., Olvegård, Maja, Ahl, A., Almström, M., Dugic, I., Emilsson, F., Haralanova, V., Johansson, M., Karlsson, G., Kennborn, B., Kovacikova, J., Lindström, J., Olsson, A., Pettersson, Mikael, Ruber, Roger, Pepitone, Kevin, Kirby, G., Olvegård, Maja, Ahl, A., Almström, M., Dugic, I., Emilsson, F., Haralanova, V., Johansson, M., Karlsson, G., Kennborn, B., Kovacikova, J., Lindström, J., Olsson, A., Pettersson, Mikael, and Ruber, Roger
- Abstract
A prototype CCT dipole magnet developed by a collaboration between Swedish universities, Swedish industry and CERN will be tested at Uppsala University. This 1 m long double-aperture magnet can provide a field strength of 3.3 T at 85 A in a 70 mm aperture with an integrated field of 2.8 Tm. It is intended to replace the current LHC orbit corrector magnets which are reaching the end of their expected life due to the radiation load. The new magnet is designed to handle the radiation dose of the upgrade to the high-luminosity LHC, which will deliver about ten times the current radiation dose. It must therefore be more resistant to radiation and meet strict requirements in terms of electrical insulation while matching the original field quality and self-protective capability, mechanical volume, and maximum excitation current. This paper will present the latest of the design and manufacturing work, including the results of simulations of the mechanical field and the mechanical stress. Details of the various tests performed before machining the parts are also presented.
- Published
- 2023
- Full Text
- View/download PDF
11. Modeling Results of the Quench Behavior of a Nb-Ti Canted-Cosine-Theta Corrector Magnet for LHC.
- Author
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Bagni, T., primary, Ahl, A., additional, Almström, M., additional, Canale, M., additional, Dugic, I., additional, Emilsson, F., additional, Gentini, L., additional, Haralanova, V., additional, Johansson, M., additional, Karlsson, G., additional, Kennborn, B., additional, Kirby, G., additional, Kovacikova, J., additional, Lindström, J., additional, Pepitone, K., additional, Pettersson, M., additional, Olsson, A., additional, Ruber, R., additional, Kern, R. Santiago, additional, Svanberg, C., additional, and Olvegård, M., additional
- Published
- 2023
- Full Text
- View/download PDF
12. Design of a Canted-Cosine-Theta Orbit Corrector for the High Luminosity LHC
- Author
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Pepitone, K., primary, Kirby, G., additional, Ruber, R., additional, Ahl, A., additional, Canale, M., additional, Dugic, I., additional, Gentini, L., additional, Johansson, M., additional, Karlsson, G., additional, Kovacikova, J., additional, Lindstrom, J., additional, Olsson, A., additional, and Olvegard, M., additional
- Published
- 2022
- Full Text
- View/download PDF
13. Increase in admission rates and symptom severity of childhood and adolescent anorexia nervosa in Europe during the COVID-19 pandemic: data from specialized eating disorder units in different European countries
- Author
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Gilsbach, S, Plana, M, Castro-Fornieles, J, Gatta, M, Karlsson, G, Flamarique, I, Raynaud, J, Riva, A, Solberg, A, van Elburg, A, Wentz, E, Nacinovich, R, Herpertz-Dahlmann, B, Gilsbach, Susanne, Plana, Maria Teresa, Castro-Fornieles, Josefina, Gatta, Michela, Karlsson, Gunilla Paulson, Flamarique, Itziar, Raynaud, Jean-Philippe, Riva, Anna, Solberg, Anne-Line, van Elburg, Annemarie A, Wentz, Elisabet, Nacinovich, Renata, Herpertz-Dahlmann, Beate, Gilsbach, S, Plana, M, Castro-Fornieles, J, Gatta, M, Karlsson, G, Flamarique, I, Raynaud, J, Riva, A, Solberg, A, van Elburg, A, Wentz, E, Nacinovich, R, Herpertz-Dahlmann, B, Gilsbach, Susanne, Plana, Maria Teresa, Castro-Fornieles, Josefina, Gatta, Michela, Karlsson, Gunilla Paulson, Flamarique, Itziar, Raynaud, Jean-Philippe, Riva, Anna, Solberg, Anne-Line, van Elburg, Annemarie A, Wentz, Elisabet, Nacinovich, Renata, and Herpertz-Dahlmann, Beate
- Abstract
Background: The COVID-19 pandemic, associated with confinement and social isolation, seems to have impacted the course of many mental disorders in children and adolescents. An increase in hospital admission rates for juvenile anorexia nervosa (AN) has been documented in many regions of the world. However, data from Europe are scarce. Methods: We asked clinicians in specialized eating disorder units in hospitals of maximum care in France, Germany, Italy, Spain, Sweden, and the Netherlands to report on (i) overall (inpatient and outpatient) and (ii) inpatient admission rates for adolescents with AN during 2019 and 2020. Additionally, a modified version of the COVID Isolation Eating Scale (CIES) was used to assess the child and adolescent psychiatrists’ estimations of a possible increase in symptom severity in children and adolescents with AN during the COVID-19 pandemic and to (iii) inquire about the contributing factors perceived by the caring professionals. Results: Four out of six representatives of European hospitals described a higher rate of overall admissions during the pandemic. Three hospitals out of six reported an increase in inpatient admissions, and two centres had constant high numbers of admissions of both outpatients and inpatients. The clinicians perceived a higher symptom severity in 2020 than in 2019, especially involving more frequent use of social media, longer duration of exercising, and more restrictive eating. They supposed an increase in social media consumption, a perceived “loss of control”, and a lack of in-person assessments and weight controls as the main contributing factors for the deterioration in AN numbers and symptomatology. Conclusions: The COVID-19 pandemic seems to have had a deep impact on symptom severity in AN, which is mirrored by a large increase in admission rates across Europe. An increase in exercise, social media consumption, a perceived “loss of control”, and a lack of face-to-face health care seem to have contributed t
- Published
- 2022
14. Design of a Canted-Cosine-Theta Orbit Corrector for the High Luminosity LHC
- Author
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Pepitone, Kevin, Kirby, G., Ruber, Roger, Ahl, A., Canale, M., Dugic, I, Gentini, L., Johansson, M., Karlsson, G., Kovacikova, J., Lindstrom, J., Olsson, A., Olvegård, Maja, Pepitone, Kevin, Kirby, G., Ruber, Roger, Ahl, A., Canale, M., Dugic, I, Gentini, L., Johansson, M., Karlsson, G., Kovacikova, J., Lindstrom, J., Olsson, A., and Olvegård, Maja
- Abstract
The High Luminosity LHC requires dipole orbit correctors grouped in double aperture magnet assemblies. They provide a field of 3.1 T at 100 A in an aperture of 70 mm. The current standard design is a classical cosine-theta layout made with ribbon cable. However, the electric insulation of this cable is not radiation-resistant enough to withstand the radiation load expected in the coming years of LHC operation. A new design, based on a cable with polyimide insulator, that can replace the existing orbit correctors, is needed. The challenge is to design a magnet that fits directly into the existing positions and that can operate with the same busbars, passive quench protection, and power supplies. The new orbit corrector design meets high requirements on the field quality while keeping within the same mechanical volume and maximum excitation current. A collaboration of Swedish universities and Swedish industry has been formed for the development and production of a prototype magnet following a concurrent engineering methodology to reduce the time needed to produce a CCT magnet. The magnet has a 1 m long CCT dipole layout consisting of two coils. The superconductor is a commercially available 0.33 mm wire with polyimide insulation in a 6-around-1 cable. The channels in the coil formers, that determine the CCT layout, allow for 2 x 5 cable layers. A total of 70 windings makes that the coil current can be kept below 100 A. We will present the detailed design and preliminary quench simulations.
- Published
- 2022
- Full Text
- View/download PDF
15. Intrapartum transfer of oxytocin across the human placenta:An ex vivo perfusion experiment
- Author
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Nathan, Nina O, Hedegaard, M., Karlsson, G., Knudsen, Lisbeth E., Mathiesen, Line, Nathan, Nina O, Hedegaard, M., Karlsson, G., Knudsen, Lisbeth E., and Mathiesen, Line
- Published
- 2022
16. Numerical study of heat transfer, flow fields, turbulent length scales, and anisotropy in corrugated heat exchanger channels
- Author
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Karlsson, G., primary, Fureby, C., additional, Wang, L., additional, Norberg, C., additional, Holm, M., additional, and Strömer, F., additional
- Published
- 2022
- Full Text
- View/download PDF
17. sj-doc-1-msj-10.1177_13524585221076717 ��� Supplemental material for Effect of siponimod on magnetic resonance imaging measures of neurodegeneration and myelination in secondary progressive multiple sclerosis: Gray matter atrophy and magnetization transfer ratio analyses from the EXPAND phase 3 trial
- Author
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Arnold, Douglas L, Piani-Meier, Daniela, Bar-Or, Amit, Benedict, Ralph HB, Cree, Bruce AC, Giovannoni, Gavin, Gold, Ralf, Vermersch, Patrick, Arnould, Sophie, Dahlke, Frank, Hach, Thomas, Ritter, Shannon, Karlsson, G��ril, Kappos, Ludwig, and Fox, Robert J
- Subjects
FOS: Clinical medicine ,111702 Aged Health Care ,FOS: Health sciences ,110904 Neurology and Neuromuscular Diseases - Abstract
Supplemental material, sj-docx-1-msj-10.1177_13524585221076717 for Effect of siponimod on magnetic resonance imaging measures of neurodegeneration and myelination in secondary progressive multiple sclerosis: Gray matter atrophy and magnetization transfer ratio analyses from the EXPAND phase 3 trial by Douglas L Arnold, Daniela Piani-Meier, Amit Bar-Or, Ralph HB Benedict, Bruce AC Cree, Gavin Giovannoni, Ralf Gold, Patrick Vermersch, Sophie Arnould, Frank Dahlke, Thomas Hach, Shannon Ritter, G��ril Karlsson, Ludwig Kappos and Robert J Fox in Multiple Sclerosis Journal
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- 2022
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18. 322 Intrapartum transfer of oxytocin across the human placenta: An ex vivo perfusion experiment
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Nathan, N., primary, Hedegaard, M., additional, Karlsson, G., additional, Knudsen, L., additional, and Mathiesen, L., additional
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- 2022
- Full Text
- View/download PDF
19. Twenty years of nitrogen deposition to Norway spruce forests in Sweden
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Karlsson, P.E., primary, Akselsson, C., additional, Hellsten, S., additional, and Karlsson, G. Pihl, additional
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- 2021
- Full Text
- View/download PDF
20. Optimization of droplet digital PCR assays for the type-specific detection and quantification of five HPV genotypes, including additional data on viral loads of nine different HPV genotypes in cervical carcinomas
- Author
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Bohr Mordhorst Louise, Karlsson G. Mats, Lillsunde-Larsson Gabriella, Kaliff Malin, and Helenius Gisela
- Subjects
0301 basic medicine ,Oncology ,medicine.medical_specialty ,Genotype ,Coefficient of variation ,030106 microbiology ,Uterine Cervical Neoplasms ,Biology ,Polymerase Chain Reaction ,03 medical and health sciences ,Virology ,Internal medicine ,Cytology ,medicine ,Humans ,Digital polymerase chain reaction ,Papillomaviridae ,Cervical cancer ,Carcinoma ,Papillomavirus Infections ,Viral Load ,medicine.disease ,biology.organism_classification ,030104 developmental biology ,DNA, Viral ,Cohort ,Female ,Viral load - Abstract
The droplet digital PCR (ddPCR) system enables high-sensitivity detection of nucleic acids and direct absolute quantification of the targets. The aim of this research was to evaluate this system for viral load (VL) analysis of the human papillomavirus (HPV) genotypes HPV31, 35, 39, 51 and 56 measured in number of viral particles per cell. The sample types used for the optimization of the ddPCR assay were formalin-fixed paraffin-embedded (FFPE) tissues and cervical liquid cytology samples. The presently optimized ddPCR assays, together with assays optimized previously for HPV16, 18, 33 and 45, with the same ddPCR method, were used for the VL analysis of cervical tumor samples. Results published previously on the present study cohort showed that women with a cervical tumor containing multiple high-risk HPV genotypes had a worse prognosis compared to women with single-genotype-infected tumors. The VL was therefore analyzed in this study for the same cohort, as a possible explanatory factor to the prognostic differences. The results of the optimization part of the study, with analysis of VL using ddPCR in DNA from varying sample types (FFPE and liquid cytology samples), showed that each of the five assays demonstrated good inter- and intra-assay means with a coefficient of variation (CV) under 8% and 6% respectably. The cohort results showed no difference in VL between tumors with multiple and single HPV infections, and therefore did most likely not constitute a contributing factor for prognostic differences observed previously. However, tumors from women aged 60 years or older or containing certain HPV genotypes and genotype genera were associated with a higher VL.
- Published
- 2021
- Full Text
- View/download PDF
21. Human Primary Airway Basal Cells Display a Continuum of Molecular Phases from Health to Disease in Chronic Obstructive Pulmonary Disease.
- Author
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Wijk, Sofia C., Prabhala, Pavan, Michaliková, Barbora, Sommarin, Mikael, Doyle, Alexander, Lang, Stefan, Kanzenbach, Karina, Tufvesson, Ellen, Lindstedt, Sandra, Leigh, Nicholas D., Karlsson, G€oran, Bjermer, Leif, Westergren-Thorsson, Gunilla, and Magnusson, Mattias
- Subjects
AIRWAY (Anatomy) ,RESPIRATION ,OBSTRUCTIVE lung diseases ,LUNG diseases ,RESPIRATORY obstructions - Abstract
Airway basal cells are crucial for regeneration of the human lung airway epithelium and are believed to be important contributors to chronic obstructive pulmonary disease (COPD) and other lung disorders. To reveal how basal cells contribute to disease and to discover novel therapeutic targets, these basal cells need to be further characterized. In this study, we optimized a flow cytometry-based cell sorting protocol for primary human airway basal cells dependent on cell size and NGFR (nerve-growth factor receptor) expression. The basal cell population was found to be molecularly and functionally heterogeneous, in contrast to cultured basal cells. In addition, significant differences were found, such as KRT14 expression exclusively existing in cultured cells. Also, colony-forming capacity was significantly increased in cultured cells showing a clonal enrichment in vitro. Next, by single-cell RNA sequencing on primary basal cells from healthy donors and patients with Global Initiative for Chronic Obstructive Lung Disease stage IV COPD, the gene expression revealed a continuum ranging from healthy basal cell signatures to diseased basal cell phenotypes. We identified several upregulated genes that may indicate COPD, such as stress response-related genes GADD45B and AHSA1, together with with genes involved in the response to hypoxia, such as CITED2 and SOD1. Taken together, the presence of healthy basal cells in stage IV COPD demonstrates the potential for regeneration through the discovery of novel therapeutic targets. In addition, we show the importance of studying primary basal cells when investigating disease mechanisms as well as for developing future cell-based therapies in the human lung. !! [ABSTRACT FROM AUTHOR]
- Published
- 2021
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22. A meta-analysis of the relation between therapeutic alliance and treatment outcome in eating disorders
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Graves, T.A., Tabri, N., Thompson-Brenner, H., Franko, D.L., Eddy, K.T., Bourion-Bedes, S., Brown, A., Constantino, M.J., Flückiger, C., Forsberg, S., Isserlin, L., Couturier, J., Paulson Karlsson, G., Mander, J., Teufel, M., Mitchell, J.E., Crosby, R.D., Prestano, C., Satir, D.A., Simpson, S., Sly, R., Lacey, J.H., Stiles-Shields, C., Tasca, G.A., Waller, G., Zaitsoff, S.L., Rienecke, R., Le Grange, D., Thomas, J.J., University of Zurich, and Thomas, Jennifer J
- Subjects
Adult ,Male ,Cognitive Behavioral Therapy ,10093 Institute of Psychology ,Medizin ,Professional-Patient Relations ,Feeding and Eating Disorders ,2738 Psychiatry and Mental Health ,Psychiatry and Mental health ,Treatment Outcome ,Humans ,Female ,Cooperative Behavior ,150 Psychology - Abstract
The therapeutic alliance has demonstrated an association with favorable psychotherapeutic outcomes in the treatment of eating disorders (EDs). However, questions remain about the inter-relationships between early alliance, early symptom improvement, and treatment outcome. We conducted a meta-analysis on the relations among these constructs, and possible moderators of these relations, in psychosocial treatments for EDs. Twenty studies met inclusion criteria and supplied sufficient supplementary data. Results revealed small-to-moderate effect sizes, βs = 0.13 to 0.22 (p
- Published
- 2017
23. Map-Aided Multi-Level Indoor Vehicle Positioning
- Author
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Fritsche, Carsten, Karlsson, G Rickard, Noren, Olle, Gustafsson, Fredrik, Fritsche, Carsten, Karlsson, G Rickard, Noren, Olle, and Gustafsson, Fredrik
- Abstract
In this paper, an indoor vehicle multi-level positioning algorithm is proposed that makes use of an indoor map, as well as dead-reckoning sensor information that is available in every car. A particle filter framework is used for online optimal Bayesian vehicle positioning with indoor-outdoor transitions. The method is validated experimentally in two indoor multi-level car parks. The achieved results indicate that accurate indoor positioning is possible already today without relying on expensive technology such as e.g. laser scanners or additional hardware., Funding Agencies|Wallenberg Autonomous System Program (WASP); Swedish Research Council; Excellence Center at Linkoping and Lund in Information Technology (ELLIIT)
- Published
- 2017
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24. Orales Fingolimod (FTYP720) versus Placebo bei primär progredienter Multipler Sklerose: Studiendesign einer Phase III-Studie
- Author
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Meergans, M, Karlsson, G, and Wiendl, H
- Published
- 2024
- Full Text
- View/download PDF
25. Socialtjänsten ska inte fungera som angivare
- Author
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Svensson, Jessika, Jönsson, Jessica H., Israelsson, Magnus, Kamali, Masoud, Kaffrell-Lindahl, Angelika, Espvall, Majen, Blid, Mats, Miller, Emelie, Andoh-Appiah, Charlotte, Mårtenson, Anneli, Calbucura, Jorge, Thörn, Carina, Engqvist, Ulf, Hoppstadius, Helena, Jonsson, Ummmis, Östman, Caroline, Karlsson-G, Sofie, Hedman, Åsa-Helena, Svensson, Jessika, Jönsson, Jessica H., Israelsson, Magnus, Kamali, Masoud, Kaffrell-Lindahl, Angelika, Espvall, Majen, Blid, Mats, Miller, Emelie, Andoh-Appiah, Charlotte, Mårtenson, Anneli, Calbucura, Jorge, Thörn, Carina, Engqvist, Ulf, Hoppstadius, Helena, Jonsson, Ummmis, Östman, Caroline, Karlsson-G, Sofie, and Hedman, Åsa-Helena
- Published
- 2016
26. Living with the long-term consequences 11-13 years after stroke: A phenomenological study
- Author
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Erikson, A, primary, Karlsson, G, additional, and Tham, K, additional
- Published
- 2016
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27. Heavy metal and nitrogen concentrations in mosses are declining across Europe whilst some “hotspots” remain in 2010
- Author
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Harmens, H., Norris, D.A., Sharps, K., Mills, G., Alber, R., Aleksiayenak, Y., Blum, O., Cucu-Man, S.-M., Dam, M., De Temmerman, L., Ene, A., Fernández, J.A., Martinez-Abaigar, J., Frontasyeva, M., Godzik, B., Jeran, Z., Lazo, P., Leblond, S., Liiv, S., Magnússon, S.H., Maňkovská, B., Phil Karlsson, G., Piispanen, J., Poikolainen, J., Santamaria, J.M., Skudnik, M., Spiric, Z., Stafilov, T., Steinnes, E., Stihi, C., Suchara, I., Thöni, L., Todoran, R., Yurukova, L., Zechmeister, H.G., Harmens, H., Norris, D.A., Sharps, K., Mills, G., Alber, R., Aleksiayenak, Y., Blum, O., Cucu-Man, S.-M., Dam, M., De Temmerman, L., Ene, A., Fernández, J.A., Martinez-Abaigar, J., Frontasyeva, M., Godzik, B., Jeran, Z., Lazo, P., Leblond, S., Liiv, S., Magnússon, S.H., Maňkovská, B., Phil Karlsson, G., Piispanen, J., Poikolainen, J., Santamaria, J.M., Skudnik, M., Spiric, Z., Stafilov, T., Steinnes, E., Stihi, C., Suchara, I., Thöni, L., Todoran, R., Yurukova, L., and Zechmeister, H.G.
- Abstract
In recent decades, naturally growing mosses have been used successfully as biomonitors of atmospheric deposition of heavy metals and nitrogen. Since 1990, the European moss survey has been repeated at five-yearly intervals. In 2010, the lowest concentrations of metals and nitrogen in mosses were generally found in northern Europe, whereas the highest concentrations were observed in (south-)eastern Europe for metals and the central belt for nitrogen. Averaged across Europe, since 1990, the median concentration in mosses has declined the most for lead (77%), followed by vanadium (55%), cadmium (51%), chromium (43%), zinc (34%), nickel (33%), iron (27%), arsenic (21%, since 1995), mercury (14%, since 1995) and copper (11%). Between 2005 and 2010, the decline ranged from 6% for copper to 36% for lead; for nitrogen the decline was 5%. Despite the Europe-wide decline, no changes or increases have been observed between 2005 and 2010 in some (regions of) countries.
- Published
- 2015
28. Exceedance of critical loads and of critical limits impacts tree nutrition across Europe
- Author
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Waldner, P., Thimonier, A., Graf Pannatier, E., Etzold, S., Schmitt, María, Marchetto, A., Rautio, P., Derome, K., Nieminen, T. M., Nevalainen, S., Lindroos, A. J., Merilä, P., Kindermann, G., Neumann, M., Cools, N., de Vos, B., Roskams, P., Verstraeten, A., Hansen, Karine, Pihl Karlsson, G., Dietrich, H. P., Raspe, S., Fischer, R., Lorenz, Martin, Iost, S., Granke, O., Sanders, T. G. M., Michel, A., Nagel, H. D., Scheuschner, T., Simončič, P., von Wilpert, K., Meesenburg, H., Fleck, S., Benham, S., Vanguelova, E., Clarke, N., Ingerslev, M., Vesterdal, L., Gundersen, P., Stupak, I., Jonard, M., Potočić, N., Minaya, Mayte, Waldner, P., Thimonier, A., Graf Pannatier, E., Etzold, S., Schmitt, María, Marchetto, A., Rautio, P., Derome, K., Nieminen, T. M., Nevalainen, S., Lindroos, A. J., Merilä, P., Kindermann, G., Neumann, M., Cools, N., de Vos, B., Roskams, P., Verstraeten, A., Hansen, Karine, Pihl Karlsson, G., Dietrich, H. P., Raspe, S., Fischer, R., Lorenz, Martin, Iost, S., Granke, O., Sanders, T. G. M., Michel, A., Nagel, H. D., Scheuschner, T., Simončič, P., von Wilpert, K., Meesenburg, H., Fleck, S., Benham, S., Vanguelova, E., Clarke, N., Ingerslev, M., Vesterdal, L., Gundersen, P., Stupak, I., Jonard, M., Potočić, N., and Minaya, Mayte
- Abstract
Key message Exceedance of critical limits in soil solution samples was more frequent in intensively monitored forest plots across Europe with critical loads for acidity and eutrophication exceeded compared to other plots from the same network. Elevated inorganic nitrogen concentrations in soil solution tended to be related to less favourable nutritional status. Context Forests have been exposed to elevated atmospheric deposition of acidifying and eutrophying sulphur and nitrogen compounds for decades. Critical loads have been identified, below which damage due to acidification and eutrophication are not expected to occur. Aims We explored the relationship between the exceedance of critical loads and inorganic nitrogen concentration, the base cation to aluminium ratio in soil solutions, as well as the nutritional status of trees. Methods We used recent data describing deposition, elemental concentrations in soil solution and foliage, as well as the level of damage to foliage recorded at forest plots of the ICP Forests intensive monitoring network across Europe. Results Critical loads for inorganic nitrogen deposition were exceeded on about a third to half of the forest plots. Elevated inorganic nitrogen concentrations in soil solution occurred more frequently among these plots. Indications of nutrient imbalances, such as low magnesium concentration in foliage or discolouration of needles and leaves, were seldom but appeared more frequently on plots where the critical limits for soil solution were exceeded. Conclusion The findings support the hypothesis that elevated nitrogen and sulphur deposition can lead to imbalances in tree nutrition. © 2015, The Author(s).
- Published
- 2015
29. Structure of the N-terminal domain of the metalloprotease PrtV from Vibrio cholerae
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Persson, C., primary, Mayzel, M., additional, Edwin, A., additional, Wai, S.N., additional, Ohman, A., additional, Sauer-Eriksson, A.E., additional, and Karlsson, G., additional
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- 2015
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30. OP69 – 2651: Safety and effect of fingolimod on no evidence of disease activity (NEDA-4) in young adult patients with relapsing-remitting multiple sclerosis
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Bajer-Kornek, B., primary, Ghezzi, A., additional, Karlsson, G., additional, Häering, D., additional, Gärtner, J., additional, Chitnis, T., additional, Pohl, D., additional, and Putzki, N., additional
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- 2015
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31. Heavy metal and nitrogen concentrations in mosses are declining across Europe whilst some “hotspots” remain in 2010
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Harmens, H., primary, Norris, D.A., additional, Sharps, K., additional, Mills, G., additional, Alber, R., additional, Aleksiayenak, Y., additional, Blum, O., additional, Cucu-Man, S.-M., additional, Dam, M., additional, De Temmerman, L., additional, Ene, A., additional, Fernández, J.A., additional, Martinez-Abaigar, J., additional, Frontasyeva, M., additional, Godzik, B., additional, Jeran, Z., additional, Lazo, P., additional, Leblond, S., additional, Liiv, S., additional, Magnússon, S.H., additional, Maňkovská, B., additional, Karlsson, G. Pihl, additional, Piispanen, J., additional, Poikolainen, J., additional, Santamaria, J.M., additional, Skudnik, M., additional, Spiric, Z., additional, Stafilov, T., additional, Steinnes, E., additional, Stihi, C., additional, Suchara, I., additional, Thöni, L., additional, Todoran, R., additional, Yurukova, L., additional, and Zechmeister, H.G., additional
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- 2015
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32. Increase in admission rates and symptom severity of childhood and adolescent anorexia nervosa in Europe during the COVID-19 pandemic: data from specialized eating disorder units in different European countries
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Gilsbach, Susanne, Plana, Maria Teresa, Castro Fornieles, Josefina, Gatta, Michela, Paulson Karlsson, Gunilla, Flamarique, Itziar, Raynaud, Jean-Philippe, Riva, Anna, Solberg, Anne-Line, van Elburg, Annemarie A., Wentz, Elisabet, Renata, Nacinovich, Herpertz-Dahlmann, Beate, Leerstoel Engelhard, Experimental psychopathology, Gilsbach, S, Plana, M, Castro-Fornieles, J, Gatta, M, Karlsson, G, Flamarique, I, Raynaud, J, Riva, A, Solberg, A, van Elburg, A, Wentz, E, Nacinovich, R, and Herpertz-Dahlmann, B
- Subjects
Hospital admission and discharge ,Anorèxia nerviosa ,COVID-19 ,COVID-19 pandemic ,Anorexia nervosa ,Ingressos i altes en els hospitals ,Hospital admission ,Europe ,Psychiatry and Mental health ,ddc:610 ,Pediatrics, Perinatology, and Child Health ,Europa ,Hospital admissions - Abstract
Child and adolescent psychiatry and mental health 16(1), 46 (2022). doi:10.1186/s13034-022-00482-x, Published by Biomed Central, London
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- 2022
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33. Toward Predicting Motion Sickness Using Virtual Reality and a Moving Platform Assessing Brain, Muscles, and Heart Signals
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Marco Recenti, Carlo Ricciardi, Romain Aubonnet, Ilaria Picone, Deborah Jacob, Halldór Á. R. Svansson, Sólveig Agnarsdóttir, Gunnar H. Karlsson, Valdís Baeringsdóttir, Hannes Petersen, Paolo Gargiulo, Recenti, M., Ricciardi, C., Aubonnet, R., Picone, I., Jacob, D., Svansson, H. A. R., Agnarsdottir, S., Karlsson, G. H., Baeringsdottir, V., Petersen, H., and Gargiulo, P.
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motion sickne ,Histology ,Brain activity and meditation ,Computer science ,lcsh:Biotechnology ,0206 medical engineering ,Biomedical Engineering ,Bioengineering ,02 engineering and technology ,Virtual reality ,Electroencephalography ,postural control ,03 medical and health sciences ,0302 clinical medicine ,lcsh:TP248.13-248.65 ,sea sickness ,medicine ,heart rate ,Seasickness ,Beta wave ,electroencephalogram – EEG ,Original Research ,Vestibular system ,medicine.diagnostic_test ,business.industry ,Bioengineering and Biotechnology ,Pattern recognition ,electromyography – EMG ,sea sickne ,medicine.disease ,020601 biomedical engineering ,Motion sickness ,machine learning ,motion sickness ,Feature (computer vision) ,virtual reality ,Artificial intelligence ,business ,030217 neurology & neurosurgery ,Biotechnology - Abstract
Motion sickness (MS) and postural control (PC) conditions are common complaints among those who passively travel. Many theories explaining a probable cause for MS have been proposed but the most prominent is the sensory conflict theory, stating that a mismatch between vestibular and visual signals causes MS. Few measurements have been made to understand and quantify the interplay between muscle activation, brain activity, and heart behavior during this condition. We introduce here a novel multimetric system called BioVRSea based on virtual reality (VR), a mechanical platform and several biomedical sensors to study the physiology associated with MS and seasickness. This study reports the results from 28 individuals: the subjects stand on the platform wearing VR goggles, a 64-channel EEG dry-electrode cap, two EMG sensors on the gastrocnemius muscles, and a sensor on the chest that captures the heart rate (HR). The virtual environment shows a boat surrounded by waves whose frequency and amplitude are synchronized with the platform movement. Three measurement protocols are performed by each subject, after each of which they answer the Motion Sickness Susceptibility Questionnaire. Nineteen parameters are extracted from the biomedical sensors (5 from EEG, 12 from EMG and, 2 from HR) and 13 from the questionnaire. Eight binary indexes are computed to quantify the symptoms combining all of them in the Motion Sickness Index (IMS). These parameters create the MS database composed of 83 measurements. All indexes undergo univariate statistical analysis, with EMG parameters being most significant, in contrast to EEG parameters. Machine learning (ML) gives good results in the classification of the binary indexes, finding random forest to be the best algorithm (accuracy of 74.7 for IMS). The feature importance analysis showed that muscle parameters are the most relevant, and for EEG analysis, beta wave results were the most important. The present work serves as the first step in identifying the key physiological factors that differentiate those who suffer from MS from those who do not using the novel BioVRSea system. Coupled with ML, BioVRSea is of value in the evaluation of PC disruptions, which are among the most disturbing and costly health conditions affecting humans.
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- 2021
34. Twenty years of nitrogen deposition to Norway spruce forests in Sweden.
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Karlsson, P.E., Akselsson, C., Hellsten, S., and Pihl Karlsson, G.
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- 2022
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35. Single-cell multiomics analysis of chronic myeloid leukemia links cellular heterogeneity to therapy response.
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Warfvinge R, Geironson Ulfsson L, Dhapola P, Safi F, Sommarin M, Soneji S, Hjorth-Hansen H, Mustjoki S, Richter J, Thakur RK, and Karlsson G
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- Humans, Neoplastic Stem Cells metabolism, Neoplastic Stem Cells drug effects, Neoplastic Stem Cells pathology, Retrospective Studies, Male, Female, Gene Expression Profiling, Middle Aged, Multiomics, Leukemia, Myelogenous, Chronic, BCR-ABL Positive drug therapy, Leukemia, Myelogenous, Chronic, BCR-ABL Positive genetics, Leukemia, Myelogenous, Chronic, BCR-ABL Positive pathology, Single-Cell Analysis methods, Protein Kinase Inhibitors pharmacology, Protein Kinase Inhibitors therapeutic use
- Abstract
The advent of tyrosine kinase inhibitors (TKIs) as treatment of chronic myeloid leukemia (CML) is a paradigm in molecularly targeted cancer therapy. Nonetheless, TKI-insensitive leukemia stem cells (LSCs) persist in most patients even after years of treatment and are imperative for disease progression as well as recurrence during treatment-free remission (TFR). Here, we have generated high-resolution single-cell multiomics maps from CML patients at diagnosis, retrospectively stratified by BCR::ABL1
IS (%) following 12 months of TKI therapy. Simultaneous measurement of global gene expression profiles together with >40 surface markers from the same cells revealed that each patient harbored a unique composition of stem and progenitor cells at diagnosis. The patients with treatment failure after 12 months of therapy had a markedly higher abundance of molecularly defined primitive cells at diagnosis compared to the optimal responders. The multiomic feature landscape enabled visualization of the primitive fraction as a mixture of molecularly distinct BCR::ABL1+ LSCs and BCR::ABL1- hematopoietic stem cells (HSCs) in variable ratio across patients, and guided their prospective isolation by a combination of CD26 and CD35 cell surface markers. We for the first time show that BCR::ABL1+ LSCs and BCR::ABL1- HSCs can be distinctly separated as CD26+ CD35- and CD26- CD35+ , respectively. In addition, we found the ratio of LSC/HSC to be higher in patients with prospective treatment failure compared to optimal responders, at diagnosis as well as following 3 months of TKI therapy. Collectively, this data builds a framework for understanding therapy response and adapting treatment by devising strategies to extinguish or suppress TKI-insensitive LSCs., Competing Interests: RW, LG, FS, MS, SS, RT No competing interests declared, PD, GK Is a board member and has equity in Nygen Analytics AB, HH Received honoraria from Pfizer, Novartis, BMS, and Incyte, SM Received honoraria and research funding from BMS, research funding from Novartis, Janpix, and honoraria from Dren Bio, JR Received honoraria and research funding from Novartis and Bristol-Myers Squibb (BMS) and honoraria from Ariad, (© 2023, Warfvinge et al.)- Published
- 2024
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36. Trends in mercury, lead and cadmium concentrations in 27 European streams and rivers: 2000-2020.
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Eklöf K, von Brömssen C, Huser B, Åkerblom S, Augustaitis A, Veiteberg Braaten HF, de Wit HA, Dirnböck T, Elustondo D, Grandin U, Holubová A, Kleemola S, Krám P, Lundin L, Löfgren S, Markensten H, Moldan F, Pihl Karlsson G, Rönnback P, Valinia S, and Vuorenmaa J
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- Europe, Mercury analysis, Cadmium analysis, Lead analysis, Rivers chemistry, Environmental Monitoring methods, Water Pollutants, Chemical analysis
- Abstract
Temporal trends for concentrations of mercury (Hg), lead (Pb) and cadmium (Cd) were evaluated from year 2000-2020 in 20 (Hg), 23 (Pb) and 11 (Cd) watercourses in remote forest catchments in Europe. Decreasing trends were observed in 15% (Hg), 39% (Pb) and 45% (Cd) of the watercourses during the period of evaluation. Decreasing trends were mainly observed between 2000 and 2005 for Hg and between 2000 and 2015 for Pb and Cd. For the last five years of the studied time period (2015-2020), more watercourses showed significant increasing, rather than decreasing Hg, Pb and Cd trends. This was interpreted as a legacy effect of metals still retained in catchment soils. The overall negative trends during the earlier part of the study period were likely driven by declining deposition of metals over Europe, especially for Pb and Cd. Other changes related to metal transport and chemistry may have contributed to the observed trends as well, including recovery from acidification and the ongoing browning of surface waters at northern latitudes. Here we found that organic carbon could explain the seasonal variation in Hg and Pb, but was not related the interannual trends. This study highlights the need for long-term monitoring and robust statistical methods that can detect multidirectional, long-term change in water chemistry., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2024
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37. Insights into mechanisms of MALT1 allostery from NMR and AlphaFold dynamic analyses.
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Wallerstein J, Han X, Levkovets M, Lesovoy D, Malmodin D, Mirabello C, Wallner B, Sun R, Sandalova T, Agback P, Karlsson G, Achour A, Agback T, and Orekhov V
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- Allosteric Regulation, Humans, Magnetic Resonance Spectroscopy methods, Nuclear Magnetic Resonance, Biomolecular, Protein Conformation, Mutation, Molecular Dynamics Simulation, Mucosa-Associated Lymphoid Tissue Lymphoma Translocation 1 Protein metabolism, Mucosa-Associated Lymphoid Tissue Lymphoma Translocation 1 Protein chemistry, Mucosa-Associated Lymphoid Tissue Lymphoma Translocation 1 Protein genetics
- Abstract
Mucosa-associated lymphoid tissue lymphoma-translocation protein 1 (MALT1) is an attractive target for the development of modulatory compounds in the treatment of lymphoma and other cancers. While the three-dimensional structure of MALT1 has been previously determined through X-ray analysis, its dynamic behaviour in solution has remained unexplored. We present here dynamic analyses of the apo MALT1 form along with the E549A mutation. This investigation used NMR
15 N relaxation and NOE measurements between side-chain methyl groups. Our findings confirm that MALT1 exists as a monomer in solution, and demonstrate that the domains display semi-independent movements in relation to each other. Our dynamic study, covering multiple time scales, along with the assessment of conformational populations by Molecular Dynamic simulations, Alpha Fold modelling and PCA analysis, put the side chain of residue W580 in an inward position, shedding light at potential mechanisms underlying the allosteric regulation of this enzyme., (© 2024. The Author(s).)- Published
- 2024
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38. The structure of the second CysD domain of MUC2 and role in mucin organization by transglutaminase-based cross-linking.
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Recktenwald CV, Karlsson G, Garcia-Bonete MJ, Katona G, Jensen M, Lymer R, Bäckström M, Johansson MEV, Hansson GC, and Trillo-Muyo S
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- Humans, Models, Molecular, Cysteine metabolism, Cysteine chemistry, Amino Acid Sequence, Protein Multimerization, Cross-Linking Reagents chemistry, Cross-Linking Reagents metabolism, Mucin-2 metabolism, Mucin-2 chemistry, Transglutaminases metabolism, Transglutaminases chemistry, Protein Domains
- Abstract
The MUC2 mucin protects the colonic epithelium by a two-layered mucus with an inner attached bacteria-free layer and an outer layer harboring commensal bacteria. CysD domains are 100 amino-acid-long sequences containing 10 cysteines that separate highly O-glycosylated proline, threonine, serine (PTS) regions in mucins. The structure of the second CysD, CysD2, of MUC2 is now solved by nuclear magnetic resonance. CysD2 shows a stable stalk region predicted to be partly covered by adjacent O-glycans attached to neighboring PTS sequences, whereas the CysD2 tip with three flexible loops is suggested to be well exposed. It shows transient dimer interactions at acidic pH, weakened at physiological pH. This transient interaction can be stabilized in vitro and in vivo by transglutaminase 3-catalyzed isopeptide bonds, preferring a specific glutamine residue on one flexible loop. This covalent dimer is modeled suggesting that CysD domains act as connecting hubs for covalent stabilization of mucins to form a protective mucus., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
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- 2024
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39. Single-cell analysis of immune recognition in chronic myeloid leukemia patients following tyrosine kinase inhibitor discontinuation.
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Huuhtanen J, Adnan-Awad S, Theodoropoulos J, Forstén S, Warfvinge R, Dufva O, Bouhlal J, Dhapola P, Duàn H, Laajala E, Kasanen T, Klievink J, Ilander M, Jaatinen T, Olsson-Strömberg U, Hjorth-Hansen H, Burchert A, Karlsson G, Kreutzman A, Lähdesmäki H, and Mustjoki S
- Subjects
- Humans, Hepatitis A Virus Cellular Receptor 2, Protein Kinase Inhibitors pharmacology, Protein Kinase Inhibitors therapeutic use, Single-Cell Analysis, Tyrosine Kinase Inhibitors, Leukemia, Myelogenous, Chronic, BCR-ABL Positive pathology
- Abstract
Immunological control of residual leukemia cells is thought to occur in patients with chronic myeloid leukemia (CML) that maintain treatment-free remission (TFR) following tyrosine kinase inhibitor (TKI) discontinuation. To study this, we analyzed 55 single-cell RNA and T cell receptor (TCR) sequenced samples (scRNA+TCRαβ-seq) from patients with CML (n = 13, N = 25), other cancers (n = 28), and healthy (n = 7). The high number and active phenotype of natural killer (NK) cells in CML separated them from healthy and other cancers. Most NK cells in CML belonged to the active CD56
dim cluster with high expression of GZMA/B, PRF1, CCL3/4, and IFNG, with interactions with leukemic cells via inhibitory LGALS9-TIM3 and PVR-TIGIT interactions. Accordingly, upregulation of LGALS9 was observed in CML target cells and TIM3 in NK cells when co-cultured together. Additionally, we created a classifier to identify TCRs targeting leukemia-associated antigen PR1 and quantified anti-PR1 T cells in 90 CML and 786 healthy TCRβ-sequenced samples. Anti-PR1 T cells were more prevalent in CML, enriched in bone marrow samples, and enriched in the mature, cytotoxic CD8 + TEMRA cluster, especially in a patient maintaining TFR. Our results highlight the role of NK cells and anti-PR1 T cells in anti-leukemic immune responses in CML., (© 2023. The Author(s).)- Published
- 2024
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40. Concurrent stem- and lineage-affiliated chromatin programs precede hematopoietic lineage restriction.
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Safi F, Dhapola P, Warsi S, Sommarin M, Erlandsson E, Ungerbäck J, Warfvinge R, Sitnicka E, Bryder D, Böiers C, Thakur RK, and Karlsson G
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- 2023
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41. The Development of Ofatumumab, a Fully Human Anti-CD20 Monoclonal Antibody for Practical Use in Relapsing Multiple Sclerosis Treatment.
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Hauser SL, Kappos L, Bar-Or A, Wiendl H, Paling D, Williams M, Gold R, Chan A, Milo R, Das Gupta A, Karlsson G, Sullivan R, Graham G, Merschhemke M, Häring DA, and Vermersch P
- Abstract
The importance of B cells in multiple sclerosis (MS) has been demonstrated through the advent of B-cell-depleting anti-CD20 antibody therapies. Ofatumumab is the first fully human anti-CD20 monoclonal antibody (mAb) developed and tested for subcutaneous (SC) self-administration at monthly doses of 20 mg, and has been approved in the US, UK, EU, and other regions and countries worldwide for the treatment of relapsing MS. The development goal of ofatumumab was to obtain a highly efficacious anti-CD20 therapy, with a safety and tolerability profile that allows for self-administration by MS patients at home and a positive benefit-risk balance for use in the broad relapsing MS population. This development goal was enabled by the unique binding site, higher affinity to B cells, and higher potency of ofatumumab compared to previous anti-CD20 mAbs; these properties of ofatumumab facilitate rapid B-cell depletion and maintenance with a low dose at a low injection volume (20 mg/0.4 ml). The high potency in turn enables the selective targeting of B cells that reside in the lymphatic system via subcutaneous (SC) administration. Through a comprehensive dose-finding program in two phase 2 studies (one intravenous and one SC) and model simulations, it was found that safety and tolerability can be further improved, and the risk of systemic injection-related reactions (IRRs) minimized, by avoiding doses ≥ 30 mg, and by reaching initial and rapid B-cell depletion via stepwise weekly administration of ofatumumab at Weeks 0, 1, and 2 (instead of a single high dose). Once near-complete B-cell depletion is reached, it can be maintained by monthly doses of 20 mg/0.4 ml. Indeed, in phase 3 trials (ASCLEPIOS I/II), rapid and sustained near-complete B-cell depletion (largely independent of body weight, race and other factors) was observed with this dosing regimen, which resulted in superior efficacy of ofatumumab versus teriflunomide on relapse rates, disability worsening, neuronal injury (serum neurofilament light chain), and imaging outcomes. Likely due to its fully human nature, ofatumumab has a low immunogenic risk profile-only 2 of 914 patients receiving ofatumumab in ASCLEPIOS I/II developed anti-drug antibodies-and this may also underlie the infrequent IRRs (20% with ofatumumab vs. 15% with the placebo injection in the teriflunomide arm) that were mostly (99.8%) mild to moderate in severity. The overall rates of infections and serious infections in patients treated with ofatumumab were similar to those in patients treated with teriflunomide (51.6% vs. 52.7% and 2.5% vs. 1.8%, respectively). The benefit-risk profile of ofatumumab was favorable compared to teriflunomide in the broad RMS population, and also in the predefined subgroups of both recently diagnosed and/or treatment-naïve patients, as well as previously disease-modifying therapy-treated patients. Interim data from the ongoing extension study (ALITHIOS) have shown that long-term treatment with ofatumumab up to 4 years is well-tolerated in RMS patients, with no new safety risks identified. In parallel to the phase 3 trials in which SC administration was carried out with a pre-filled syringe, an autoinjector pen for more convenient self-administration of the ofatumumab 20 mg dose was developed and is available for use in clinical practice., (© 2023. The Author(s).)
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- 2023
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42. Efficacy and safety of four-year ofatumumab treatment in relapsing multiple sclerosis: The ALITHIOS open-label extension.
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Hauser SL, Zielman R, Das Gupta A, Xi J, Stoneman D, Karlsson G, Robertson D, Cohen JA, and Kappos L
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- Humans, Recurrence, Multiple Sclerosis, Multiple Sclerosis, Relapsing-Remitting drug therapy, Multiple Sclerosis, Relapsing-Remitting pathology
- Abstract
Background: Ofatumumab has demonstrated superior efficacy and favorable safety for up to 2.5 years versus teriflunomide in relapsing multiple sclerosis (RMS)., Objective: Further characterize efficacy and safety of ofatumumab in RMS., Methods: Efficacy set: patients randomized to ofatumumab/teriflunomide in ASCLEPIOS I/II (core). Safety set: patients who received ⩾ 1 dose of ofatumumab in ASCLEPIOS I/II, APLIOS, APOLITOS (all core), or ALITHIOS (umbrella open-label extension). Patients received continuous ofatumumab or were newly switched from teriflunomide. Data cut-off: 25 September 2021., Results: In the efficacy set ( n = 1882), the continuous ofatumumab group had a low annualized relapse rate (ARR 0.05 (95% confidence interval: 0.04-0.07)), low numbers of gadolinium-enhancing (Gd+) T1 lesions (0.01 lesions/scan) and fewer new/enlarging T2 lesions (annualized rate 0.08). Overall, 78.8% met three-parameter "no evidence of disease activity" criteria through 4 years. Switching from teriflunomide led to reduced ARR, risk of confirmed disability worsening (CDW), new/enlarging T2 lesions, Gd+ T1 lesions, and serum neurofilament light chain. In the continuous and newly switched ofatumumab groups, cumulative 3- and 6-month CDW rates remained low. In the safety set ( n = 1969), the most frequently reported adverse events were infections and infestations (58.35%). No new safety signals were identified., Conclusion: Ofatumumab has a favorable longer-term benefit-risk profile in RMS., Trial Registry: ALITHIOS (NCT03650114): https://clinicaltrials.gov/ct2/show/NCT03650114., Competing Interests: Declaration of conflicting interestsThe author(s) declared the following potential conflicts of interest with respect to the research, authorship, and/or publication of this article: All support for the present manuscript (e.g. funding, provision of study materials, medical writing, article processing charges) and the studies were sponsored and funded by Novartis Pharma AG, Basel, Switzerland. Novartis Pharma AG supported the development of this manuscript, provided data analyses according to the direction of the authors, and provided funding for medical writing support. Open access fee was paid by Novartis. Medical writing support for the development of this publication, under the direction of the authors, was provided by James Currie (BSc, Hons; PhD.), Laura Crocker (BMedSci, Hons), and Philippa Lloyd (BSc, Hons) of Ashfield MedComms, an Inizio company, and was funded by Novartis Pharma AG. Stephen L Hauser currently serves on the scientific advisory board of ACCURE, Alector, Annexon, board of directors of Neurona, and has previously consulted for BD, Moderna, and NGM Bio. Dr Hauser also has received travel reimbursement and writing support from F. Hoffmann-La Roche and Novartis AG for anti-CD20-therapy-related meetings and presentations. Grants: NIH/NINDS (R35NS111644) and Valhalla Foundation; within the past 36 months, no longer active: National Multiple Sclerosis Society (RR 2005-A-13). Ronald Zielman is a full-time employee of Novartis. Ayan Das Gupta is a paid and permanent employee of Novartis. Jing Xi is an employee of Novartis. Dee Stoneman is a full-time employee of Novartis. Goeril Karlsson is a full-time salaried employee of Novartis. Derrick Robertson declares grants or contracts from Anokion, Atara Biotherapeutics, Biogen, GW Pharmaceuticals, Novartis, PRIME CME, TG Therapeutics, CorEvitas, EMD Serono, Genentech, Janssen, PCORI and Sanofi; consulting fees from Biogen, Genentech, EMD Serono, Janssen, Bristol Myers Squibb, Horizon, Novartis, Sanofi, TG Therapeutics, Alexion, Greenwich Biosciences and Mallinckrodt; payment or honoraria for lectures, presentations, speakers bureaus, manuscript writing or educational events from Biogen, EMD Serono, Genentech, TG Therapeutics, Bristol Myers Squibb, Janssen, PRIME CME, Sanofi, Alexion and Horizon. Jeffrey A Cohen declares consulting fees from Biogen, Convelo, EMD Serono, Gaossamer Gio, Mylan and PSA; Leadership or fiduciary role in other board, society, committee or advocacy group, paid or unpaid for ACTRIMS; other financial or non-financial interests for Sage—serving as an Editor of Mult Scler J. Ludwig Kappos declares grants or contracts from any entity (payments made to institution) from Novartis, Roche, and Innosuisse; consulting fees (payments made to institution) from AurigaVision AG, Bayer AG, df-mp Molnia & Pohlman, Genentech, Glaxo Smith Kline, Janssen LLC, Japan Tobacco Inc., Merck, Novartis, Roche, Senda Biosciences Inc., Shionogi BV, Wellmera AG; payment or honoraria for lectures, presentations, speakers bureaus, manuscript writing or educational events (payments made to institution) from BMS, Celgene, Janssen Pharmaceuticals, Merck, Novartis and Roche; support for attending meetings and/or travel (payments made to institution) from MH Consulting, Österreichische Gesellschaft für Neurologie, Novartis Biocieˆncias S.A. and Eli Lilly; participation on a Data Safety Monitoring Board or Advisory Board (AB, payments made to institution) from Actelion, Merck Healthcare KGaA, Novartis, Roche, Sanofi and TG Therapeutics and (DSMB, payments made to institution) from Minoryx Therapeutics S.L. and Santhera Pharmaceuticals; leadership or fiduciary role in other board, society, committee or advocacy group paid or unpaid from Neurostatus-UHB AG—Supervisory Board (unpaid), payment to institution; (charitable) Foundation Clinical Neuroimmunology and Neuroscience Basel (“RC2NB”)—CEO (employment by University Hospital Basel); MAGNBIMS Steering Committee, EUROPEAN CHARCOT FOUNDATION (Board membership)—no payment.
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- 2023
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43. Single-cell multiomics of human fetal hematopoiesis define a developmental-specific population and a fetal signature.
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Sommarin MNE, Olofzon R, Palo S, Dhapola P, Soneji S, Karlsson G, and Böiers C
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- Adult, Humans, Child, Hematopoietic Stem Cells metabolism, Bone Marrow metabolism, Hematopoiesis genetics, Multiomics, Leukemia metabolism
- Abstract
Knowledge of human fetal blood development and how it differs from adult blood is highly relevant to our understanding of congenital blood and immune disorders and childhood leukemia, of which the latter can originate in utero. Blood formation occurs in waves that overlap in time and space, adding to heterogeneity, which necessitates single-cell approaches. Here, a combined single-cell immunophenotypic and transcriptional map of first trimester primitive blood development is presented. Using CITE-seq (cellular indexing of transcriptomes and epitopes by sequencing), the molecular profile of established immunophenotype-gated progenitors was analyzed in the fetal liver (FL). Classical markers for hematopoietic stem cells (HSCs), such as CD90 and CD49F, were largely preserved, whereas CD135 (FLT3) and CD123 (IL3R) had a ubiquitous expression pattern capturing heterogenous populations. Direct molecular comparison with an adult bone marrow data set revealed that the HSC state was less frequent in FL, whereas cells with a lymphomyeloid signature were more abundant. An erythromyeloid-primed multipotent progenitor cluster was identified, potentially representing a transient, fetal-specific population. Furthermore, differentially expressed genes between fetal and adult counterparts were specifically analyzed, and a fetal core signature was identified. The core gene set could separate subgroups of acute lymphoblastic leukemia by age, suggesting that a fetal program may be partially retained in specific subgroups of pediatric leukemia. Our detailed single-cell map presented herein emphasizes molecular and immunophenotypic differences between fetal and adult blood cells, which are of significance for future studies of pediatric leukemia and blood development in general., (© 2023 by The American Society of Hematology. Licensed under Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0), permitting only noncommercial, nonderivative use with attribution. All other rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
44. Central Versus Peripheral Drug Exposure Ratio, a Key Differentiator for Siponimod Over Fingolimod?
- Author
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Bigaud M, Ramseier P, Tisserand S, Lang M, Urban B, Beerli C, and Karlsson G
- Abstract
Introduction: Siponimod, a potent and selective sphingosine-1-phosphate (S1P
1,5 ) agonist, is the only therapeutic agent that has shown efficacy against disability progression, decline in cognitive processing speed, total brain volume loss, gray matter atrophy and signs of demyelination in patients with secondary progressive multiple sclerosis (SPMS). Although the pathophysiology of progression in SPMS and primary progressive MS (PPMS) is thought to be similar, fingolimod, the prototype S1P1,3,45 agonist, failed to show efficacy against disability progression in PPMS. Differentiating siponimod from fingolimod at the level of their central effects is believed to be the key to a better understanding of the underlying characteristics that could make siponimod uniquely efficacious in progressive MS (PMS)., Methods: Here, we compared the central vs. peripheral dose-dependent drug exposures for siponimod and fingolimod in healthy mice and mice with experimental autoimmune encephalomyelitis (EAE)., Results: Siponimod treatment achieved dose-dependent efficacy and dose-proportional increases in steady-state drug blood levels, with a central nervous system (CNS)/blood drug-exposure ratio (CNS/blood DER) of ~ 6 in both healthy and EAE mice. In contrast, fingolimod treatments achieved dose-proportional increases in fingolimod and fingolimod-phosphate blood levels, with respectiveCNS/blood DER that were markedly increased (≥ threefold) in EAE vs. healthy mice., Conclusion: If proven to have translational value, these observations would suggest thatCNS/blood DER may be a key differentiator for siponimod over fingolimod for clinical efficacy in PMS., (© 2023. The Author(s).)- Published
- 2023
- Full Text
- View/download PDF
45. When complications arise during birth: LBTQ people's experiences of care.
- Author
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Klittmark S, Malmquist A, Karlsson G, Ulfsdotter A, Grundström H, and Nieminen K
- Subjects
- Pregnancy, Infant, Newborn, Female, Humans, Gender Identity, Sexual Behavior, Parturition, Transgender Persons psychology, Sexual and Gender Minorities
- Abstract
Objective: To explore the care experiences of lesbian, bisexual, transgender, and queer (LBTQ) people during births where complications have arisen., Design: Data were collected through semi-structured interviews with self-identified LBTQ people who had experienced obstetrical and/or neonatal complications., Setting: Interviews were conducted in Sweden., Participants: A total of 22 self-identified LBTQ people participated. 12 had experienced birth complications as the birth parent and ten as the non-birth parent., Findings: Most participants had felt invalidated as an LBTQ family. Separation of the family due to complications elevated the number of hetero/cisnormative assumptions, as new encounters with healthcare professionals increased. Dealing with normative assumptions was particularly difficult in stressful and vulnerable situations. A majority of the birth parents experienced disrespectful treatment from healthcare professionals that violated their bodily integrity. Most participants experienced lack of vital information and emotional support, and expressed that the LBTQ identity made it harder to ask for help., Conclusions: Disrespectful treatment and deficiencies in care contributed to negative experiences when complications arose during birth. Trusting care relationships are important to protect the birth experience in case of complications. Validation of the LBTQ identity and access to emotional support for both birth and non-birth parents are crucial for preventing negative birth experiences., Implications for Practice: To reduce minority stress and create conditions for a trusting relationship, healthcare professionals should specifically validate the LBTQ identity, strive for continuity of carer and zero separation of the LBTQ family. Healthcare professionals should make extensive efforts to transfer LBTQ related information between wards., Competing Interests: Declaration of Competing Interests The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2023
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- View/download PDF
46. Insulin thermostability in a real-world setting.
- Author
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Pendsey S, James S, Garrett TJ, Nord AB, Pendsey S, Malmodin D, Karlsson G, Maniam J, Atkinson MA, Forsander G, and Ogle GD
- Subjects
- Humans, Hypoglycemic Agents therapeutic use, Insulin therapeutic use, Diabetes Mellitus, Type 2 drug therapy
- Abstract
Competing Interests: JM and GDO work for the Life for a Child programme at Diabetes NSW & ACT, which does receive non-salary support from Eli Lilly. MAA reports cooperation (consultative, educational, and research) with companies and entities (CodeBio, Diamyd Medical, Endsulin, IM therapeutics, and Repitoire) interested in type 1 diabetes prevention and reversal (not directly insulin thermostability), as well as receiving an independent award from the Novo Nordisk Foundation. MAA is also President of Insulin for Life USA. All other authors declare no competing interests.
- Published
- 2023
- Full Text
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47. Temporal multimodal single-cell profiling of native hematopoiesis illuminates altered differentiation trajectories with age.
- Author
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Konturek-Ciesla A, Dhapola P, Zhang Q, Säwén P, Wan H, Karlsson G, and Bryder D
- Subjects
- Humans, Aged, Cell Lineage genetics, Cell Differentiation, Aging genetics, Hematopoiesis genetics, Hematopoietic Stem Cells
- Abstract
Aging negatively affects hematopoiesis, with consequences for immunity and acquired blood cell disorders. Although impairments in hematopoietic stem cell (HSC) function contribute to this, the in vivo dynamics of such changes remain obscure. Here, we integrate extensive longitudinal functional assessments of HSC-specific lineage tracing with single-cell transcriptome and epitope profiling. In contrast to recent suggestions from single-cell RNA sequencing alone, our data favor a defined structure of HSC/progenitor differentiation that deviates substantially from HSC-derived hematopoiesis following transplantation. Native age-dependent attrition in HSC differentiation manifests as drastically reduced lymphoid output through an early lymphoid-primed progenitor (MPP Ly-I). While in vitro activation fails to rescue lymphoid differentiation from most aged HSCs, robust lymphopoiesis can be achieved by culturing elevated numbers of candidate HSCs. Therefore, our data position rare chronologically aged HSC clones, fully competent at producing lymphoid offspring, as a prime target for approaches aimed to improve lymphopoiesis in the elderly., Competing Interests: Declaration of interests The authors declare no competing interest., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
48. In vitro clonal multilineage differentiation of distinct murine hematopoietic progenitor populations.
- Author
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Safi F, Dhapola P, Erlandsson E, Ulfsson LG, Calderón AS, Böiers C, and Karlsson G
- Subjects
- Animals, Mice, Cell Differentiation genetics, Coculture Techniques, Hematopoietic Stem Cells
- Abstract
Here we describe an in vitro co-culture system that can differentiate hematopoietic progenitor populations to all major hematopoietic lineages at clonal level. We present both a sensitive single-cell switch-culture system as well as a less laborious alternative barcoding protocol more convenient for larger cell numbers. Importantly, generation of all lineages from single long-term hematopoietic stem cells are described, following 21 days of culture. This protocol represents an efficient tool for validation experiments for single-cell genomics data. For complete details on the use and execution of this protocol, please refer to Safi et al. (2022).
1 ., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2023
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49. Identification of phenotypically, functionally, and anatomically distinct stromal niche populations in human bone marrow based on single-cell RNA sequencing.
- Author
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Li H, Bräunig S, Dhapolar P, Karlsson G, Lang S, and Scheding S
- Subjects
- Humans, Stem Cell Niche physiology, Bone Marrow Cells metabolism, Hematopoiesis genetics, Sequence Analysis, RNA, RNA metabolism, Bone Marrow physiology, Hematopoietic Stem Cells metabolism
- Abstract
Hematopoiesis is regulated by the bone marrow (BM) stroma. However, cellular identities and functions of the different BM stromal elements in humans remain poorly defined. Based on single-cell RNA sequencing (scRNAseq), we systematically characterized the human non-hematopoietic BM stromal compartment and we investigated stromal cell regulation principles based on the RNA velocity analysis using scVelo and studied the interactions between the human BM stromal cells and hematopoietic cells based on ligand-receptor (LR) expression using CellPhoneDB. scRNAseq led to the identification of six transcriptionally and functionally distinct stromal cell populations. Stromal cell differentiation hierarchy was recapitulated based on RNA velocity analysis and in vitro proliferation capacities and differentiation potentials. Potential key factors that might govern the transition from stem and progenitor cells to fate-committed cells were identified. In situ localization analysis demonstrated that different stromal cells were localized in different niches in the bone marrow. In silico cell-cell communication analysis further predicted that different stromal cell types might regulate hematopoiesis through distinct mechanisms. These findings provide the basis for a comprehensive understanding of the cellular complexity of the human BM microenvironment and the intricate stroma-hematopoiesis crosstalk mechanisms, thus refining our current view on human hematopoietic niche organization., Competing Interests: HL, SB, PD, GK, SL, SS No competing interests declared, (© 2023, Li et al.)
- Published
- 2023
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50. Schlafen2 is a regulator of quiescence in adult murine hematopoietic stem cells.
- Author
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Warsi S, Dahl M, Smith EMK, Rydstrom A, Mansell E, Sigurdsson V, Sjoberg J, Soneji S, Rorby E, Siva K, Grahn THM, Liu Y, Blank U, Karlsson G, and Karlsson S
- Subjects
- Animals, Mice, Bone Marrow, Cell Differentiation genetics, Cell Proliferation, Hematopoiesis, Hematopoietic Stem Cells metabolism, Cell Cycle Proteins genetics
- Abstract
Even though hematopoietic stem cells (HSC) are characterized by their ability to self-renew and differentiate, they primarily reside in quiescence. Despite the immense importance of this quiescent state, its maintenance and regulation is still incompletely understood. Schlafen2 (Slfn2) is a cytoplasmic protein known to be involved in cell proliferation, differentiation, quiescence, interferon response, and regulation of the immune system. Interestingly, Slfn2 is highly expressed in primitive hematopoietic cells. In order to investigate the role of Slfn2 in the regulation of HSC we have studied HSC function in the elektra mouse model, where the elektra allele of the Slfn2 gene contains a point mutation causing loss of function of the Slfn2 protein. We found that homozygosity for the elektra allele caused a decrease of primitive hematopoietic compartments in murine bone marrow. We further found that transplantation of elektra bone marrow and purified HSC resulted in a significantly reduced regenerative capacity of HSC in competitive transplantation settings. Importantly, we found that a significantly higher fraction of elektra HSC (as compared to wild-type HSC) were actively cycling, suggesting that the mutation in Slfn2 increases HSC proliferation. This additionally caused an increased amount of apoptotic stem and progenitor cells. Taken together, our findings demonstrate that dysregulation of Slfn2 results in a functional deficiency of primitive hematopoietic cells, which is particularly reflected by a drastically impaired ability to reconstitute the hematopoietic system following transplantation and an increase in HSC proliferation. This study thus identifies Slfn2 as a novel and critical regulator of adult HSC and HSC quiescence.
- Published
- 2022
- Full Text
- View/download PDF
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