12 results on '"Jun yuan Li"'
Search Results
2. The complete mitochondrial genome of a new deep-sea hagfish Eptatretus sp. Nan-Hai (Myxinidae: Eptatretus) from the South China Sea
- Author
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Chun-Ang Lian, Jun-Yuan Li, Fang-Chao Zhu, Jun Li, and Li-Sheng He
- Subjects
mitochondrial genome ,deep sea ,hagfish ,Genetics ,QH426-470 - Abstract
In this study, the complete mitochondrial DNA sequence of a hagfish Eptatretus sp. Nan-Hai from a depth of 1000 m is presented. The complete sequence was determined using next-generation sequencing and long PCRs. The mitochondrial genome of Eptatretus sp. Nan-Hai is 17,538 bps in size and composed of 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and one control region (D-loop). The base composition of mitochondrial genome is biased toward A + T content, at 67.21%, with GC skew of −0.35 and AT skew of −0.03. A phylogenetic tree revealed that within the genus Eptatretus, Eptatretus sp. Nan-Hai is closely related to Eptatretus atami.
- Published
- 2020
- Full Text
- View/download PDF
3. Ontogeny reversal and phylogenetic analysis of Turritopsis sp.5 (Cnidaria, Hydrozoa, Oceaniidae), a possible new species endemic to Xiamen, China
- Author
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Jun-yuan Li, Dong-hui Guo, Peng-cheng Wu, and Li-sheng He
- Subjects
Turritopsis ,Reverse development ,Medusa ,Hydroid ,China ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Ontogeny reversal, as seen in some cnidarians, is an unprecedented phenomenon in the animal kingdom involving reversal of the ordinary life cycle. Three species of Turritopsis have been shown to be capable of inverted metamorphosis, a process in which the pelagic medusa transforms back into a juvenile benthic polyp stage when faced with adverse conditions. Turritopsis sp.5 is a species of Turritopsis collected from Xiamen, China which presents a similar ability, being able to reverse its life cycle if injured by mechanical stress. Phylogenetic analysis based on both 16S rDNA and cytochrome c oxidase subunit I (COI) genetic barcodes shows that Turritopsis sp.5 is phylogenetically clustered in a clade separate from other species of Turritopsis. The genetic distance between T. sp.5 and the Japanese species T. sp.2 is the shortest, when measured by the Kimura 2-Parameter metric, and the distance to the New Zealand species T. rubra is the largest. An experimental assay on the induction of reverse development in this species was initiated by cutting medusae into upper and lower parts. We show, for the first time, that the two dissected parts have significantly different potentials to transform into polyps. Also, a series of morphological changes of the reversed life cycle can be recognised, including medusa stage, contraction stage I, contraction stage II, cyst, cyst with stolons, and polyp. The discovery of species capable of reverse ontogeny caused by unfavorable conditions adds to the available systems with which to study the cell types that contribute to the developmental reversal and the molecular mechanisms of the directional determination of ontogeny.
- Published
- 2018
- Full Text
- View/download PDF
4. Centrifuge study on behavior of rigid pile composite foundation under embankment in soft soil
- Author
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Shan-dai Xu, Xiao-nan Gong, Jia-jin Zhou, Jian-lin Yu, Jun-yuan Li, and Ri-qing Xu
- Subjects
geography ,Centrifuge ,geography.geographical_feature_category ,Settlement (structural) ,010102 general mathematics ,0211 other engineering and technologies ,Foundation (engineering) ,02 engineering and technology ,Geotechnical Engineering and Engineering Geology ,01 natural sciences ,Earth and Planetary Sciences (miscellaneous) ,Geotechnical engineering ,Vertical displacement ,Bearing capacity ,0101 mathematics ,Pile ,Levee ,Failure mode and effects analysis ,Geology ,021101 geological & geomatics engineering - Abstract
The rigid pile composite foundation is widely used in highway projects in soft soil area as it can effectively increase the bearing capacity and stability of the foundation. While the research on the behavior and failure mode of rigid pile composite foundation under embankment is not enough, instability failure of rigid pile composite foundation often occurs in practical projects. This paper presents a centrifuge model test to investigate the load transfer mechanism, settlement characteristic and failure mode of rigid pile composite foundation under embankment. The test results show that: the soil displacement of different region in rigid pile composite foundation was different, obvious vertical displacement occurred in the soil under the center of embankment and the horizontal displacement was very small in this region; both vertical and horizontal displacement occurred in the soil under the shoulder of embankment; and obvious horizontal displacement occurred in the soil under the slope toe of embankment; moreover, ground heave also occurred near the slope toe of embankment. The soil displacement in rigid pile composite foundation had a large influence on the stress characteristic and failure mode of rigid piles, the compressive failure and bending failure would probably occur for the piles under the center and shoulder of the embankment, respectively, and the tension-bending failure would probably occur for the piles under the slope toe of embankment. The different failure modes of piles at different regions should be considered in the design of rigid pile composite foundation under embankment. The test results can be used to improve the design method for rigid pile composite foundation under embankment in practical projects.
- Published
- 2020
- Full Text
- View/download PDF
5. Associations of estimated glomerular filtration rate and blood urea nitrogen with incident coronary heart disease: the Dongfeng-Tongji Cohort Study
- Author
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Kuai Yu, Jun Yuan Li, Haijing Jiang, Xinwen Min, Handong Yang, Huanqian Chen, and Tangchun Wu
- Subjects
Adult ,Male ,medicine.medical_specialty ,Renal function ,lcsh:Medicine ,Coronary Disease ,030204 cardiovascular system & hematology ,Risk Assessment ,Article ,Blood Urea Nitrogen ,03 medical and health sciences ,0302 clinical medicine ,Asian People ,Internal medicine ,medicine ,Humans ,Prospective Studies ,030212 general & internal medicine ,Prospective cohort study ,lcsh:Science ,Blood urea nitrogen ,Aged ,Multidisciplinary ,business.industry ,Incidence ,Hazard ratio ,lcsh:R ,Middle Aged ,medicine.disease ,Confidence interval ,Surgery ,Heart failure ,Cohort ,Cardiology ,Female ,lcsh:Q ,business ,Glomerular Filtration Rate ,Cohort study - Abstract
Estimated glomerular filtration rate (eGFR) has been reported to be associated with risk of incident coronary heart disease (CHD), and blood urea nitrogen (BUN) has been shown to be a strong predictor of mortality in patients with heart failure (HF). However, such epidemiological evidence from Chinese population was still limited. We used Cox proportional-hazards regression models to investigate the associations of eGFR and BUN with risk of incident CHD in the prospective Dongfeng-Tongji (DFTJ) cohort. After fully adjusted for potential confounders, a 10-unit decline in eGFR was associated with higher risk for CHD (hazard ratio [HR] 1.05, 95% confidence interval [CI] 1.01–1.09); compared with individuals with normal eGFR levels (eGFR ≥ 90 ml/min per 1.73 m2), individuals with a mild-to-severe eGFR decline (15 to 60 ml/min per 1.73 m2) were at significantly greater risk for CHD (HR 1.25, 95% CI 1.05–1.48; P = 0.011). Compared with individuals in the lowest tertile of BUN, those in the highest tertile were at significantly greater risk for CHD (HR 1.17, 95% CI 1.03–1.33; P = 0.014). In conclusion, a mild-to-severe decline in eGFR or a raised level of BUN might be associated with increased risk of incident CHD in middle-aged and elderly Chinese populations.
- Published
- 2017
- Full Text
- View/download PDF
6. The complete mitochondrial genome of the largest amphipod, Alicella gigantea: Insight into its phylogenetic relationships and deep sea adaptive characters
- Author
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Zeng-lei Song, Li-Sheng He, Jun-yuan Li, and Guoyong Yan
- Subjects
Mitochondrial DNA ,Aquatic Organisms ,RNA, Mitochondrial ,02 engineering and technology ,Biology ,Biochemistry ,Genome ,Arthropod Proteins ,Mitochondrial Proteins ,03 medical and health sciences ,Structural Biology ,Phylogenetics ,Animals ,Amphipoda ,Molecular Biology ,Gene ,Phylogeny ,030304 developmental biology ,0303 health sciences ,Phylogenetic tree ,Gigantea ,Hadal zone ,General Medicine ,Gene rearrangement ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Adaptation, Physiological ,Evolutionary biology ,Genome, Mitochondrial ,0210 nano-technology - Abstract
Alicella gigantea (Alicelloidae) is a scavenger with the largest body size among amphipods. It is a participant in the foodweb of deepsea ecosystem and distributed with vast bathymetric and geographic ranges. In this study, the mitochondrial genome of A. gigantea was completely assembled and characterized. The complete sequence has a total length of 16,851 bp, comprising the usual eukaryotic components, with 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and 2 noncoding control regions (CRs). The gene rearrangement and reverse nucleotide strand bias of its mitochondrial genome are similar to those observed in the deepsea amphipod Eurythenes maldoror (Eurytheneidae), but different from the characters of Halice sp. MT-2017 (Dexaminoidea), an inhabitant of a deeper environment. Phylogenetic analysis indicates that A. gigantea occupies the basal branch of deepsea species—E. maldoror and Hirondellea gigas. This phylogeny supports the hypothesis that the evolution of hadal amphipods has undergone a transition from the abyssal depth. Compared to 41 available shallow water equivalents, the four accessible mitochondrial genomes from the deep sea, including the one produced in this study, show significantly fewer charged amino acids in the 13 PCGs, which suggests an adaption to the deepsea environment.
- Published
- 2019
7. Characterization of the mitochondrial genome of an ancient amphipod Halice sp. MT-2017 (Pardaliscidae) from 10,908 m in the Mariana Trench
- Author
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Cong Zeng, Guoyong Yan, Jun-yuan Li, and Li-Sheng He
- Subjects
0301 basic medicine ,Mitochondrial DNA ,Time Factors ,lcsh:Medicine ,Biology ,Genome ,Article ,Evolution, Molecular ,03 medical and health sciences ,0302 clinical medicine ,RNA, Transfer ,Phylogenetics ,Animals ,Amphipoda ,Amino Acids ,lcsh:Science ,Codon ,Gene ,Ecosystem ,Phylogeny ,Gene Rearrangement ,Base Composition ,Multidisciplinary ,lcsh:R ,Genetic Variation ,Pardaliscidae ,Bayes Theorem ,Hadal zone ,Gene rearrangement ,Ribosomal RNA ,biology.organism_classification ,Genes, Mitochondrial ,030104 developmental biology ,RNA, Ribosomal ,Evolutionary biology ,Genome, Mitochondrial ,Mutation ,lcsh:Q ,030217 neurology & neurosurgery - Abstract
Small amphipods (Halice sp. MT-2017) with body length Halice sp. shared the usual gene components of metazoans, comprising 13 protein coding genes (PCGs), 22 transfer RNAs (tRNAs), and 2 ribosomal RNAs (rRNAs). The arrangement of these genes, however, differed greatly from that of other amphipods. Of the 15 genes that were rearranged with respect to the pancrustacean gene pattern, 12 genes (2 PCGs, 2 rRNAs, and 8 tRNAs) were both translocated and strand-reversed. In contrast, the mitochondrial genomes in other amphipods never show so many reordered genes, and in most instances, only tRNAs were involved in strand-reversion-coupled translocation. Other characteristics, including reversed strand nucleotide composition bias, relatively higher composition of non-polar amino acids, and lower evolutionary rate, were also identified. Interestingly, the latter two features were shared with another hadal amphipod, Hirondellea gigas, suggesting their possible associations with the adaptation to deep-sea extreme habitats. Overall, our data provided a useful resource for future studies on the evolutionary and adaptive mechanisms of hadal faunas.
- Published
- 2019
- Full Text
- View/download PDF
8. The complete mitochondrial genome of a new deep-sea hagfish Eptatretus sp. Nan-Hai (Myxinidae: Eptatretus) from the South China Sea
- Author
-
Jun Li, Fang-Chao Zhu, Li-Sheng He, Jun-yuan Li, and Chun-Ang Lian
- Subjects
0106 biological sciences ,0301 basic medicine ,endocrine system ,Mitochondrial DNA ,South china ,hagfish ,Biology ,Eptatretus ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Deep sea ,03 medical and health sciences ,Complete sequence ,030104 developmental biology ,Mitochondrial genome ,Evolutionary biology ,deep sea ,biology.animal ,Genetics ,Molecular Biology ,Mitogenome Announcement ,Hagfish ,Sequence (medicine) ,Research Article - Abstract
In this study, the complete mitochondrial DNA sequence of a hagfish Eptatretus sp. Nan-Hai from a depth of 1000 m is presented. The complete sequence was determined using next-generation sequencing and long PCRs. The mitochondrial genome of Eptatretus sp. Nan-Hai is 17,538 bps in size and composed of 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and one control region (D-loop). The base composition of mitochondrial genome is biased toward A + T content, at 67.21%, with GC skew of −0.35 and AT skew of −0.03. A phylogenetic tree revealed that within the genus Eptatretus, Eptatretus sp. Nan-Hai is closely related to Eptatretus atami.
- Published
- 2020
9. Comparative Sonographic Study of Cerebral Hemodynamic Differences and Changes After Oxygen Therapy in Healthy Youths of Different Ethnicities in Tibet
- Author
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Yong Zha, Yun You Duan, Shu Zhen Xu, Jia Wang, Ciugene F. Bbu, and Li Jun Yuan Li
- Subjects
Male ,Middle Cerebral Artery ,medicine.medical_specialty ,Adolescent ,Ultrasonography, Doppler, Transcranial ,medicine.medical_treatment ,Cerebral arteries ,Hemodynamics ,Brain Edema ,Tibet ,Young Adult ,Internal medicine ,Oxygen therapy ,Ethnicity ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Vertebral Artery ,Pulsed doppler ,Radiological and Ultrasound Technology ,business.industry ,Oxygen Inhalation Therapy ,Hypoxia (medical) ,Resistive index ,Ultrasonography, Doppler, Pulsed ,Cerebral hemodynamics ,Cerebrovascular Circulation ,Reference values ,Physical therapy ,Cardiology ,Female ,medicine.symptom ,business ,Carotid Artery, Internal - Abstract
The purpose of this study was to sonographically assess the cerebral hemodynamic differences and changes after oxygen therapy in healthy youths of different ethnicities in Tibet.Sixty-six healthy young Han visitors and 29 healthy young Tibetan residents were divided into 4 groups. Basic information was collected. Pulsed Doppler sonography was used to record the cerebral hemodynamic parameters for the internal carotid, vertebral, and middle cerebral arteries. The participants were then instructed to inhale oxygen, and basic information and cerebral hemodynamic parameters were recorded at 1, 2, 4, and 8 minutes, respectively. Differences in these parameters between groups were analyzed.In comparisons of the flow parameters between sex-matched groups, the mean resistive index values for the internal carotid, vertebral, and middle cerebral arteries in the Han groups were significantly lower than those in the Tibetan groups (P. 05). The mean peak systolic velocity, end-diastolic velocity, and mean velocity values for the middle cerebral artery in the Han groups were significantly higher than those in the Tibetan groups (P.05). After oxygen uptake, there were no significant differences in the mean arterial oxygen saturation, heart rate, mean velocity, and resistive index values between the male groups, and similar changes were found for the arterial oxygen saturation and peak systolic velocity values between female groups after 8 minutes of oxygen uptake (P.05).Sonography is a useful modality for noninvasive and real-time detection of changes in cerebral hemodynamics and can provide reference values for the prevention and treatment of cerebrovascular diseases.
- Published
- 2015
- Full Text
- View/download PDF
10. Ontogeny reversal and phylogenetic analysis of Turritopsis sp.5 (Cnidaria, Hydrozoa, Oceaniidae), a possible new species endemic to Xiamen, China
- Author
-
Peng-cheng Wu, Li-sheng He, Dong-hui Guo, and Jun-yuan Li
- Subjects
0106 biological sciences ,0301 basic medicine ,Cnidaria ,Hydroid ,China ,Ontogeny ,media_common.quotation_subject ,Reverse development ,Zoology ,lcsh:Medicine ,Marine Biology ,010603 evolutionary biology ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Medusa ,Metamorphosis ,Clade ,Hydrozoa ,media_common ,Taxonomy ,biology ,Phylogenetic tree ,General Neuroscience ,Turritopsis ,Cytochrome c oxidase subunit I ,lcsh:R ,General Medicine ,biology.organism_classification ,030104 developmental biology ,General Agricultural and Biological Sciences ,Developmental Biology - Abstract
Ontogeny reversal, as seen in some cnidarians, is an unprecedented phenomenon in the animal kingdom involving reversal of the ordinary life cycle. Three species of Turritopsis have been shown to be capable of inverted metamorphosis, a process in which the pelagic medusa transforms back into a juvenile benthic polyp stage when faced with adverse conditions. Turritopsis sp.5 is a species of Turritopsis collected from Xiamen, China which presents a similar ability, being able to reverse its life cycle if injured by mechanical stress. Phylogenetic analysis based on both 16S rDNA and cytochrome c oxidase subunit I (COI) genetic barcodes shows that Turritopsis sp.5 is phylogenetically clustered in a clade separate from other species of Turritopsis. The genetic distance between T. sp.5 and the Japanese species T. sp.2 is the shortest, when measured by the Kimura 2-Parameter metric, and the distance to the New Zealand species T. rubra is the largest. An experimental assay on the induction of reverse development in this species was initiated by cutting medusae into upper and lower parts. We show, for the first time, that the two dissected parts have significantly different potentials to transform into polyps. Also, a series of morphological changes of the reversed life cycle can be recognised, including medusa stage, contraction stage I, contraction stage II, cyst, cyst with stolons, and polyp. The discovery of species capable of reverse ontogeny caused by unfavorable conditions adds to the available systems with which to study the cell types that contribute to the developmental reversal and the molecular mechanisms of the directional determination of ontogeny.
- Published
- 2018
11. Centrifugal Model Tests on Working Behavior of Composite Foundation Reinforced by Rigid Piles with Caps Under Embankment
- Author
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Xiao-nan Gong, Ri-qing Xu, Jun-yuan Li, Jia-Nan Zhong, and Jian-lin Yu
- Subjects
Pore water pressure ,Centrifuge ,geography ,geography.geographical_feature_category ,Deformation (mechanics) ,Settlement (structural) ,Foundation (engineering) ,Geotechnical engineering ,Compression (physics) ,Levee ,Failure mode and effects analysis ,Geology - Abstract
Centrifuge model tests are carried out to study the composite foundation under embankment which is reinforced by rigid piles with caps on the layered ground that the upper layer was soft clay and the lower layer was stiff sand. Variable acceleration loading method, constant acceleration loading method and gasbag loading method are applied to simulate the construction process, operation process and failure process of embankment. Working behavior, which including displacement of embankment and ground, internal force and deformation of piles in different position, soil stress and pore water pressure between piles, and failure modes of composite foundation are analyzed. Results show that the ground deformation is presented as settlement, horizontal displacement and toe heave. The pile-soil stress ratio in the middle of embankment (25.0) is greater than that in slope shoulder (17.4). Failure modes of piles in different position under embankment are different. To the piles under the middle of embankment, the most likely failure mode is compression failure. The piles under slope shoulder may be subjected to press-bending failure or overturning failure, and the piles under slope toe may occur tension-bending failure or overturning failure.
- Published
- 2018
- Full Text
- View/download PDF
12. Comparative analysis of the gut microbial communities between two dominant amphipods from the Challenger Deep, Mariana Trench
- Author
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Xiang-yu Cheng, Guoyong Yan, Li-Sheng He, Yong Wang, and Jun-yuan Li
- Subjects
Tenericutes ,Challenger Deep ,biology ,Phylum ,Zoology ,Hadal zone ,Aquatic Science ,Oceanography ,biology.organism_classification ,Genus ,bacteria ,Proteobacteria ,Psychrobacter ,Relative species abundance - Abstract
The gut microbiota is contributable to the adaptation and health of deep-sea organisms and has been revealed to be affected by many factors, especially the host species and diet. Here, we employed high-throughput sequencing of 16S rDNA to compare the gut microbial composition and diversity of two hadal amphipod species, Hirondellea gigas and Halice sp. MT-2017, which are predominant inhabitants in the Challenger Deep. Results showed that Tenericutes and Proteobacteria were the most abundant phyla, occupying more than 50% of total phyla, across all the specimens. At genus level, “Candidatus Hepatoplasma” was overall dominant, followed by Psychromonas in H. gigas and Psychrobacter in Halice sp. MT-2017 respectively. Notably, though two hadal amphipod species shared the same predominant symbiont of genus “Ca. Hepatoplasma”, they were classified into two different OTUs, which suggested that the colonization of symbionts were host-specific. Moreover, in terms of species relative abundance, alpha-diversity and beta-diversity, there was still a significant divergence of gut microbiota between two hadal amphipod species, which dwelled in the same extreme environment. Altogether, the results dropped a hint to the importance of symbiont genus of “Ca. Hepatoplasma” to amphipod survival in the hadal zone.
- Published
- 2019
- Full Text
- View/download PDF
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