216 results on '"Hughes JM"'
Search Results
2. Effect of midazolam on the quality and duration of anaesthetic recovery in healthy dogs undergoing elective ovariohysterectomy or castration
- Author
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Kropf, Josephine and Hughes, JM Lynne
- Published
- 2019
- Full Text
- View/download PDF
3. Investigating the Potential Utility of Environmental DNA to Provide a Relative Abundance Index for the Depleted Teleost, Mulloway, Argyrosomus japonicus
- Author
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Rourke, ML, Broadhurst, MK, Fowler, AM, Wilkes Walburn, J, Hughes, JM, Fielder, DS, DiBattista, JD, Furlan, EM, Rourke, ML, Broadhurst, MK, Fowler, AM, Wilkes Walburn, J, Hughes, JM, Fielder, DS, DiBattista, JD, and Furlan, EM
- Abstract
Non-invasive, low-cost methods for censusing depleted fish populations are being prioritised among many jurisdictions worldwide. Collecting environmental DNA (eDNA) could offer one such option for augmenting fish population assessments. However, candidate species need to be carefully selected because species-specific DNA shedding and decay rates are affected by many biotic and abiotic factors that may influence relative abundance estimates. In this study, we sought to ascertain if the eDNA of a depleted Australian teleost, mulloway, Argyrosomus japonicus, reflects its weight under controlled aquaria conditions. With four experiments, we investigated the relationships between mulloway eDNA concentrations and their weight tank−1 as a function of: (1) time post-tank establishment; (2) water temperatures (within the species’ tolerance range); (3) stocking densities; and (4) among individual, similar-sized fish. The concentrations of eDNA in tanks stabilised after six days, and a positive relationship was found between fish weight and eDNA concentration, despite some variability in shedding rates by similar-sized fish. There was also a positive effect of water temperature on eDNA concentrations, which reinforces the need to control for such abiotic factors. We conclude that there is strong utility in applying eDNA concentrations as an index of relative abundance for mulloway under controlled conditions, which justifies future field-based investigations.
- Published
- 2023
4. Poor utility of environmental DNA for estimating the biomass of a threatened freshwater teleost; but clear direction for future candidate assessments
- Author
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Rourke, ML, Walburn, JW, Broadhurst, MK, Fowler, AM, Hughes, JM, Fielder, DS, DiBattista, JD, Furlan, EM, Rourke, ML, Walburn, JW, Broadhurst, MK, Fowler, AM, Hughes, JM, Fielder, DS, DiBattista, JD, and Furlan, EM
- Abstract
Environmental DNA (eDNA) can potentially facilitate estimating the abundance of teleosts and might therefore be used for stock assessments. Nevertheless, relationships are species-specific—reflecting several abiotic and biotic factors that require understanding prior to ongoing research investment. Here, we investigated potential relationships between eDNA concentrations and the weights of an endemic and threatened Australian teleost, Murray cod, Maccullochella peelii to determine if eDNA could be used to estimate biomass. Three controlled aquaria experiments using juvenile fish were conducted to investigate the time to eDNA stabilisation in tanks following stocking (aquaria experiment 1), and then if water temperature (aquaria experiment 2) and/or fish weight (aquaria experiment 3) explained variability among eDNA concentrations in tanks. In aquaria experiment 1, eDNA concentrations stabilised nine days after stocking, but there were no significant effects of water temperature or fish weight in aquaria experiments 2 and 3. The latter result was verified during a mesocosm experiment using brood stock held in semi-natural outdoor ponds. During a fourth aquaria experiment (experiment 4), ten similar-sized juveniles were held under identical conditions in individual replicate tanks, with significant variability in eDNA concentrations that was not explained by individual fish weights. When all aquaria data were collectively assessed, there was a significant (but not useful) quadratic relationship between eDNA concentrations and fish weight. We conclude eDNA is not suitable for estimating the weight/biomass of Murray cod. Assessing the suitability of future candidate species might benefit from similar initial aquaria experiments under controlled conditions to test the independence of individual fish weight on variability among eDNA concentrations in tanks.
- Published
- 2023
5. Integrating recreational fishing into harvest strategies: Linking data with objectives
- Author
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Weltersbach, S, Fowler, AM, Ochwada-Doyle, FA, Dowling, NA, Folpp, H, Hughes, JM, Lowry, MB, Lyle, JM, Lynch, TP, Miles, NG, Chick, RC, Weltersbach, S, Fowler, AM, Ochwada-Doyle, FA, Dowling, NA, Folpp, H, Hughes, JM, Lowry, MB, Lyle, JM, Lynch, TP, Miles, NG, and Chick, RC
- Abstract
Recreational fishing (RF) is a popular pastime resulting in substantial fish mortality in many regions. Yet inclusion of RF in fishery harvest strategies is limited, because the sector's objectives are poorly understood, as are the data required to track their performance. To address this, we reviewed RF data sources available from a region of globally high participation (New South Wales [NSW], Australia) and evaluated their utility for RF-specific performance indicators within harvest strategies. We then linked these data sources to RF objectives they may be used to monitor. A total of 21 RF data sources were identified in NSW over the past two decades, spanning all major aquatic environments and 146 fished species. Numerous data sources were available to monitor ecological objectives, providing time-series and potential reference points for key indicators such as catch-per-unit-effort. Few data sources were available for social, economic, and institutional objectives, consistent with a global paucity of these data. We found that most social objectives of RF lie outside the scope of traditional harvest strategies, although some are linked to underlying ecological performance. Harvest strategy performance for RF will depend on the relative importance of social objectives and whether these can be achieved by controlling harvest.
- Published
- 2022
6. Robust environmental DNA assay development and validation: A case study with two vulnerable Australian fish
- Author
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Wilkes Walburn, J, Rourke, ML, Furlan, E, DiBattista, JD, Broadhurst, MK, Fowler, AM, Hughes, JM, Fielder, S, Wilkes Walburn, J, Rourke, ML, Furlan, E, DiBattista, JD, Broadhurst, MK, Fowler, AM, Hughes, JM, and Fielder, S
- Abstract
Analysis of environmental (e)DNA can facilitate an understanding of the presence and distribution of aquatic species. However, eDNA detection using quantitative PCR requires validated and standardized species-specific assay designs. This study presents two eDNA assays to detect Murray cod, Maccullochella peelii, and mulloway, Argyrosomus japonicus (two ecologically vulnerable Australian species), based on small fragments of the mitochondrial 12S ribosomal RNA gene. A comprehensive description of species-specific assay development, from assay design to testing in silico, in vitro and in situ, has been included to guide effective assay design and validation in future studies. The results indicate that the assay was species specific for M. peelii within its natural distribution. However, the assay also amplified genomic DNA from two allopatric and endangered congeners (Maccullochella ikei and Maccullochella mariensis), thus potentially facilitating their eDNA detection elsewhere. In contrast, the A. japonicus assay was highly species specific with no amplification among close relatives. Both target-species assays are highly sensitive to as few as four and 10 copies per PCR reaction, respectively. This study has demonstrated that the assays assessed are effective tools for detecting the targeted species in situ from environmental DNA samples, which will assist efforts to conserve and manage their stocks.
- Published
- 2022
7. Environmental DNA (eDNA) as a tool for assessing fish biomass: A review of approaches and future considerations for resource surveys
- Author
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Rourke, ML, Fowler, AM, Hughes, JM, Broadhurst, MK, DiBattista, JD, Fielder, S, Wilkes Walburn, J, Furlan, EM, Rourke, ML, Fowler, AM, Hughes, JM, Broadhurst, MK, DiBattista, JD, Fielder, S, Wilkes Walburn, J, and Furlan, EM
- Abstract
Environmental DNA (eDNA) has revolutionized our ability to identify the presence and distributions of terrestrial and aquatic organisms. Recent evidence suggests the concentration of eDNA could also provide a rapid, cost-effective indicator of abundance and/or biomass for fisheries stock assessments. Globally, fisheries resources are under immense pressure, and their sustainable harvest requires accurate information on the sizes of fished stocks. However, in many cases the required information remains elusive because of a reliance on imprecise or costly fishery-dependent and independent data. Here, we review the literature describing relationships between eDNA concentrations and fish abundance and/or biomass, as well as key influencing factors, as a precursor to determining the broader utility of eDNA for monitoring fish populations. We reviewed 63 studies published between 2012 and 2020 and found 90% identified positive relationships between eDNA concentrations and the abundance and/or biomass of focal species. Key influencing biotic factors included the taxon examined as well as their body size, distribution, reproduction, and migration. Key abiotic factors mostly comprised hydrological processes affecting the dispersal and persistence of eDNA, especially water flow and temperature, although eDNA collection methods were also influential. The cumulative influence of these different factors likely explains the substantial variability observed in eDNA concentrations, both within and among studies. Nevertheless, there is considerable evidence to support using eDNA as an ancillary tool for assessing fish population abundance and/or biomass across discrete spatio-temporal scales, following preliminary investigations to determine species- and context-specific factors influencing the eDNA abundance/biomass relationship. Advantages of eDNA monitoring relative to other approaches include reduced costs, increased efficiencies, and nonlethal sampling.
- Published
- 2022
8. Movement patterns of an iconic recreational fish species, mulloway (Argyrosomus japonicus), revealed by cooperative citizen-science tagging programs in coastal eastern Australia
- Author
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Hughes, JM, Meadows, NM, Stewart, J, Booth, DJ, Fowler, AM, Hughes, JM, Meadows, NM, Stewart, J, Booth, DJ, and Fowler, AM
- Published
- 2022
9. Community-based citizen science projects can support the distributional monitoring of fishes
- Author
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DiBattista, JD, West, KM, Hay, AC, Hughes, JM, Fowler, AM, and McGrouther, MA
- Subjects
05 Environmental Sciences, 06 Biological Sciences, 07 Agricultural and Veterinary Sciences ,Marine Biology & Hydrobiology - Abstract
Effective conservation and fisheries management requires data to capture demographic processes and range limits for each species to maximize population health and productivity. This need is constrained by limited funding and resources, particularly for countries with large land areas and coastlines as well as expansive exclusive economic zones. This imbalance means that monitoring efforts are often focused on targets of commercial and recreational fishing, which results in incomplete distributional records for non-target, small-bodied, and/or cryptic species. Community-based citizen science projects offer one potential alternative for scientists and fisheries managers needing this type of information but lacking sufficient resources to gather it. This study investigated whether data sourced from an online citizen science project (iNaturalist: Australasian Fishes) can assist in the distributional monitoring of a subset of fish species. Given the regional focus of this citizen science project, distributional data in the form of occurrence records for abundant, protected, and threatened fish species as assessed by the International Union for Conservation of Nature in Australia and New Zealand were explored. Data for important commercial and recreational fishery targets in New South Wales were also explored, as a case study of a large jurisdiction with extensive monitoring requirements. The occurrence records for some of these categories of fishes were well represented in the quality-filtered citizen science data set, particularly endemic fishes whose threat status had not yet been assessed and species not currently under any form of management. Despite gaps in coverage between major urban centres, citizen science data for the best represented endemic fishes were qualitatively comparable to the available geographic distributions for these species. We suggest that quality-filtered citizen science data can in fact be used to improve taxonomic representation and the geographic breadth of species monitoring with increased participation.
- Published
- 2021
10. Multiple spawning events promote increased larval dispersal of a predatory fish in a western boundary current
- Author
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Schilling, HT, Everett, JD, Smith, JA, Stewart, J, Hughes, JM, Roughan, M, Kerry, C, Suthers, IM, Schilling, HT, Everett, JD, Smith, JA, Stewart, J, Hughes, JM, Roughan, M, Kerry, C, and Suthers, IM
- Abstract
Transport of larvae by ocean currents is an important dispersal mechanism for many species. The timing and location of spawning can have a large influence on settlement location. Shifts in the known spawning habitat of fish, whether due to climate or the discovery of new spawning stock, can influence the distribution of juveniles and our understanding of connectivity. The globally distributed species; Pomatomus saltatrix, is one such example where a previously unrecognised summer spawning event and a more southern latitudinal extent was recently reported for the southwest Pacific population. Although restrictions are in place to protect the traditional spawning event, the importance of the newly recognised summer spawning event is uncertain. Here, we investigate larval dispersal of P. saltatrix using particle tracking simulations to identify the contributions of the different spawning events to settlement. By modelling dispersal of larvae released in northern and mid-latitude regions over the Austral spring and summer, we show that the newly recognised mid-latitude summer spawning event contributes over 50% of the larvae reaching southern latitudes. This is due to a reduced (1–2 days) pelagic larval duration (associated with temperature), resulting in reduced larval mortality, and the seasonal (summer) strengthening of the East Australian Current (EAC) transporting particles ~50 km further south. These findings demonstrate that in dynamic boundary current systems such as the EAC, the final settlement location of larvae that are transported by ocean currents can vary considerably depending on the timing and location of spawning and that multiple spawning events are important for maximum dispersal.
- Published
- 2020
11. Statement in support of the scientists, public health professionals, and medical professionals of China combatting COVID-19
- Author
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Calisher, C, Carroll, D, Colwell, R, Corley, RB, Daszak, P, Drosten, C, Enjuanes, L, Farrar, JM, Field, H, Golding, J, Gorbalenya, A, Haagmans, B, Hughes, JM, Karesh, WB, Keusch, GT, Lam, SK, Lubroth, J, Mackenzie, JS, Madoff, L, Mazet, J, Palese, P, Perlman, S, Poon, L, Roizman, B, Sail, L, Subbarao, K, Turner, M, Calisher, C, Carroll, D, Colwell, R, Corley, RB, Daszak, P, Drosten, C, Enjuanes, L, Farrar, JM, Field, H, Golding, J, Gorbalenya, A, Haagmans, B, Hughes, JM, Karesh, WB, Keusch, GT, Lam, SK, Lubroth, J, Mackenzie, JS, Madoff, L, Mazet, J, Palese, P, Perlman, S, Poon, L, Roizman, B, Sail, L, Subbarao, K, and Turner, M
- Published
- 2020
12. The influence of rainfall on recruitment success and commercial catch for the large sciaenid, Argyrosomus japonicus, in eastern Australia.
- Author
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Stewart, J, Hughes, JM, Stanley, C, Fowler, AM, Stewart, J, Hughes, JM, Stanley, C, and Fowler, AM
- Abstract
Freshwater flows into estuaries influence fish populations through effects on recruitment, growth and mortality. We compared year class strength of a large sciaenid Argyrosomus japonicus with rainfall through a 16-year period in southeastern Australia, to understand the influence of freshwater input on this estuary-dependent and depleted population. Relative year class strength, estimated by back-calculating age composition data from commercial fishery landings, was positively related to rainfall within estuarine catchments (R2 = 52%). Commercial estuarine landings from a separate 29-year dataset were positively related to rainfall two and three years earlier (R2 = 21% and 44%, respectively). Year class strength of a key prey species, the penaeid prawn Metapenaeus macleayi, was also related to year class strength of A. japonicus (R2 = 39%), suggesting that rainfall influences recruitment of A. japonicus by affecting food availability. Several years of above average rainfall may be required to promote recruitment substantial enough to rebuild the population.
- Published
- 2020
13. Reduced exploitation is associated with an altered sex ratio and larger length at maturity in southwest Pacific (east Australian) Pomatomus saltatrix
- Author
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Schilling, HT, Smith, JA, Stewart, J, Everett, JD, Hughes, JM, Suthers, IM, Schilling, HT, Smith, JA, Stewart, J, Everett, JD, Hughes, JM, and Suthers, IM
- Abstract
Pomatomus saltatrix is an important recreational fishing species with seven major populations worldwide. The reproductive biology of the southwest Pacific Ocean (east Australian) population is uncertain, with both an extended spawning and multiple spawning periods previously hypothesised. Here we demonstrate an altered sex ratio biased towards females and a larger length at 50% maturity (L50) compared to those recorded for the population 40 years ago, before comprehensive management strategies were implemented. We also report a second, previously undescribed, late-summer spawning event which was identified by analysing patterns in a gonadosomatic index across the whole population and an historical larval fish database. P. saltatrix are capable of spawning multiple times per season with estimates of batch fecundity ranging from 99,488 to 1,424,425 eggs per fish. When combined with the length frequency distribution of the population, the majority of eggs (64%) were shown to be produced by fish ≤40 cm fork length (FL). L50 was estimated at 30.2 and 31.5 cm FL for male and female P. saltatrix respectively, 4 cm larger than 40 years ago. The sex ratio of the population was found to have significantly shifted over the last 40 years from an equal sex ratio to a female dominated population (1.58 females:1 male). These dramatic alterations to the sex ratio and L50 highlights the value of monitoring the reproductive biology of exploited fish populations to ensure that management plans remain appropriate.
- Published
- 2019
14. The influence of ontogenetic diet variation on consumption rate estimates: A marine example
- Author
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Lawson, CL, Suthers, IM, Smith, JA, Schilling, HT, Stewart, J, Hughes, JM, Brodie, S, Lawson, CL, Suthers, IM, Smith, JA, Schilling, HT, Stewart, J, Hughes, JM, and Brodie, S
- Abstract
Consumption rates are the foundation of trophic ecology, yet bioenergetics models used to estimate these rates can lack realism by not incorporating the ontogeny of diet. We constructed a bioenergetics model of a marine predatory fish (tailor, Pomatomus saltatrix) that incorporated high-resolution ontogenetic diet variation, and compared consumption estimates to those derived from typical bioenergetics models that do not consider ontogenetic diet variation. We found tailor consumption was over-or under-estimated by ~5-25% when only including the most common prey item. This error was due to a positive relationship between mean prey energy density and predator body size. Since high-resolution diet data isn't always available, we also simulated how increasing dietary information progressively influenced consumption rate estimates. The greatest improvement in consumption rate estimates occurred when diet variation of 2-3 stanzas (1-2 juvenile stanzas, and adults) was included, with at least 5-6 most common prey types per stanza. We recommend increased emphasis on incorporating the ontogeny of diet and prey energy density in consumption rate estimates, especially for species with spatially segregated life stages or variable diets. A small-moderate increase in the resolution of dietary information can greatly benefit the accuracy of estimated consumption rates. We present a method of incorporating variable prey energy density into bioenergetics models.
- Published
- 2018
15. Evaluating estuarine nursery use and life history patterns of Pomatomus saltatrix in eastern Australia
- Author
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Schilling, HT, Reis-Santos, P, Hughes, JM, Smith, JA, Everett, JD, Stewart, J, Gillanders, BM, Suthers, IM, Schilling, HT, Reis-Santos, P, Hughes, JM, Smith, JA, Everett, JD, Stewart, J, Gillanders, BM, and Suthers, IM
- Abstract
Estuaries provide important nursery habitats for juvenile fish, but many species move between estuarine and coastal habitats throughout their life. We used otolith chemistry to evaluate the use of estuaries and the coastal marine environment by juvenile Pomatomus saltatrix in eastern Australia. Otolith chemical signatures of juveniles from 12 estuaries, spanning 10° of latitude, were characterised using laser ablation-inductively coupled plasma-mass spectrometry. Based upon multivariate otolith elemental signatures, fish collected from most estuaries could not be successfully discriminated from one another. This was attributed to the varying influence of marine water on otolith elemental composition in fish from all estuaries. Using a reduced number of estuarine groups, the multivariate juvenile otolith elemental signatures and univariate Sr:Ca ratio suggest that between 24 and 52% of adult P. saltatrix had a juvenile period influenced by the marine environment. Elemental profiles across adult (age-1) otoliths highlighted a variety of life history patterns, not all consistent with a juvenile estuarine phase. Furthermore, the presence of age-0 juveniles in coastal waters was confirmed from historical length-frequency data from coastal trawls. Combining multiple lines of evidence suggests considerable plasticity in juvenile life history for P. saltatrix in eastern Australia through their utilisation of both estuarine and coastal nurseries. Knowledge of juvenile life history is important for the management of coastal species of commercial and recreational importance such as P. saltatrix.
- Published
- 2018
16. Monitoring age-related trends in genomic diversity of Australian lungfish
- Author
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Schmidt, DJ, Fallon, S, Roberts, DT, Espinoza, T, McDougall, A, Brooks, SG, Kind, PK, Bond, NR, Kennard, MJ, Hughes, JM, Schmidt, DJ, Fallon, S, Roberts, DT, Espinoza, T, McDougall, A, Brooks, SG, Kind, PK, Bond, NR, Kennard, MJ, and Hughes, JM
- Abstract
An important challenge for conservation science is to detect declines in intraspecific diversity so that management action can be guided towards populations or species at risk. The lifespan of Australian lungfish (Neoceratodus forsteri) exceeds 80 years, and human impacts on breeding habitat over the last half century may have impeded recruitment, leaving populations dominated by old postreproductive individuals, potentially resulting in a small and declining breeding population. Here, we conduct a "single-sample" evaluation of genetic erosion within contemporary populations of the Australian lungfish. Genetic erosion is a temporal decline in intraspecific diversity due to factors such as reduced population size and inbreeding. We examined whether young individuals showed signs of reduced genetic diversity and/or inbreeding using a novel bomb radiocarbon dating method to age lungfish nonlethally, based on 14 C ratios of scales. A total of 15,201 single nucleotide polymorphic (SNP) loci were genotyped in 92 individuals ranging in age from 2 to 77 years old. Standardized individual heterozygosity and individual inbreeding coefficients varied widely within and between riverine populations, but neither was associated with age, so perceived problems with recruitment have not translated into genetic erosion that could be considered a proximate threat to lungfish populations. Conservation concern has surrounded Australian lungfish for over a century. However, our results suggest that long-lived threatened species can maintain stable levels of intraspecific variability when sufficient reproductive opportunities exist over the course of a long lifespan.
- Published
- 2018
17. Evaluating estuarine nursery use and life history patterns of Pomatomus saltatrix in eastern Australia
- Author
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Schilling, HT, primary, Reis-Santos, P, additional, Hughes, JM, additional, Smith, JA, additional, Everett, JD, additional, Stewart, J, additional, Gillanders, BM, additional, and Suthers, IM, additional
- Published
- 2018
- Full Text
- View/download PDF
18. Patterns and trends in marine population connectivity research
- Author
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Bryan-Brown, DN, primary, Brown, CJ, additional, Hughes, JM, additional, and Connolly, RM, additional
- Published
- 2017
- Full Text
- View/download PDF
19. Latitudinal and ontogenetic variation in the diet of a pelagic mesopredator (Pomatomus saltatrix), assessed with a classification tree analysis
- Author
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Schilling, HT, Hughes, JM, Smith, JA, Everett, JD, Stewart, J, Suthers, IM, Schilling, HT, Hughes, JM, Smith, JA, Everett, JD, Stewart, J, and Suthers, IM
- Abstract
Pelagic mesopredators are abundant in many marine ecosystems and exert strong top-down influence on food webs. We explored the dietary niche of Pomatomus saltatrix in eastern Australia, using a classification tree analysis to identify key factors driving diet variation. P. saltatrix was shown to be an opportunistic generalist predator which exhibited increased baitfish consumption, and decreased crustacean consumption, with increasing size. The classification tree analysis showed that body size and latitude had the greatest influence on the diet of P. saltatrix, with significant ontogenetic diet shifts occurring at 8 and 30 cm fork length (FL). While piscivory is evident in the majority of P. saltatrix diets by ~8 cm FL, crustaceans are almost entirely absent from the diet after ~30 cm FL. The importance of latitude was likely related to the broad-scale oceanography in the study region, including the East Australian Current and its separation from the continental shelf. The classification tree analysis is a powerful framework for identifying important variables in diet composition.
- Published
- 2017
20. Pattern of breathing and gas exchange following oral almitrine bismesylate in patients with chronic obstructive pulmonary disease
- Author
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Stradling, JR, Nicholl, CG, Cover, D, Davies, EE, Hughes, JM, and Pride, NB
- Abstract
Almitrine bismesylate (100 mg orally) significantly raised PaO2 and lowered PaCO2 in six patients with chronic obstructive pulmonary disease, compared to placebo, when they were breathing air or 28% oxygen. The estimated ideal alveolar arterial PO2 difference (AaDO2) was less after almitrine bismesylate compared to placebo, when patients were breathing either air or 28% oxygen. After almitrine bismesylate overall ventilation breathing air increased by 10% but this did not reach statistical significance. During 28% oxygen breathing, almitrine bismesylate hardly altered overall ventilation but the inspiratory duty cycle (TI/TTOT) decreased and mean inspiratory flow rate (VT/TI) increased compared to placebo. These changes were significant on a paired T test (P less than 0.05). The improvement in AaDO2 correlated with the rise in VT/TI (r = 0.67, P = 0.02) and thus we suggest that changes in both volume and pattern of breathing might explain the improved gas exchange in the lung after almitrine bismesylate .
- Published
- 2016
21. Species distributions represent intraspecific genetic diversity of freshwater fish in conservation assessments
- Author
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Hermoso, V, Kennard, MJ, Schmidt, DJ, Bond, N, Huey, JA, Mondol, RK, Jamandre, BW, Hughes, JM, Hermoso, V, Kennard, MJ, Schmidt, DJ, Bond, N, Huey, JA, Mondol, RK, Jamandre, BW, and Hughes, JM
- Abstract
Summary Accounting for genetic diversity and evolutionary processes has long been recognised as an important goal in conservation planning. However, because genetic data are often lacking, surrogate approaches are widely used. Few studies have, however, assessed the capacity of surrogate data, such as higher taxonomic levels (e.g. species distributions) to portray intraspecific genetic diversity. Here, we contrast conservation plans based on traditional species distribution data, with those derived from intraspecific genetic data for a smaller subset of species, both using freshwater fish in northern Australia. We modelled the spatial distribution of 46 species and intraspecific genetic diversity within four common species. We then identified priority areas for conservation using both data sets and evaluated the extent to which solutions obtained from species distribution data portrayed genetic diversity. We found that genetic diversity could be adequately represented within priority areas identified using species distribution data, even at low conservation targets and for species with complex genetic structure. However, this was only true when using the entire fish community (i.e. all 46 species). In contrast, a substantial component of the genetic structure would not be represented in conservation priority areas when using a subset of species. Our results have important implications for the use of surrogates for genetic diversity in conservation planning. Sufficient genetic diversity might be represented in conservation priority areas by including a broad range of species with distributions ranging from common to rare elements in the community in the prioritisation analyses. We recommend focusing on improving accuracy of data on species distributions to reduce uncertainties in conservation recommendations derived from commission and omission errors, to avoid misuse of limited conservation funds and potential failure of conservation practice.
- Published
- 2016
22. Validation Of A Self-monitoring Tool For Use In Post-concussion Syndrome Therapy
- Author
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Powierza Cs, Kevin A. Carneiro, Hughes Jm, Jason P. Mihalik, and Clark
- Subjects
Pediatrics ,medicine.medical_specialty ,020205 medical informatics ,Post-concussion syndrome ,business.industry ,Physical Therapy, Sports Therapy and Rehabilitation ,02 engineering and technology ,medicine.disease ,03 medical and health sciences ,0302 clinical medicine ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,Self-monitoring ,Physical therapy ,Orthopedics and Sports Medicine ,030212 general & internal medicine ,business - Published
- 2016
23. G29 An education programme to enhance undergraduate pre-registration nursing students’ skills in recognising and responding to acutely ill/injured children and young people: an evaluation
- Author
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Rogers, SC, primary and Hughes, JM, additional
- Published
- 2015
- Full Text
- View/download PDF
24. Exploring dysfunctional barrier phenotypes associated with glaucoma using a human pluripotent stem cell-based model of the neurovascular unit.
- Author
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Lavekar SS, Hughes JM, Gomes C, Huang KC, Harkin J, Canfield SG, and Meyer JS
- Subjects
- Humans, Endothelial Cells metabolism, Retinal Ganglion Cells, Phenotype, Cell Differentiation physiology, Membrane Transport Proteins metabolism, Cell Cycle Proteins metabolism, Cells, Cultured, Glaucoma physiopathology, Astrocytes metabolism, Pluripotent Stem Cells
- Abstract
Glaucoma is a neurodegenerative disease that results in the degeneration of retinal ganglion cells (RGCs) and subsequent loss of vision. While RGCs are the primary cell type affected in glaucoma, neighboring cell types selectively modulate RGCs to maintain overall homeostasis. Among these neighboring cell types, astrocytes, microvascular endothelial cells (MVECs), and pericytes coordinate with neurons to form the neurovascular unit that provides a physical barrier to limit the passage of toxic materials from the blood into neural tissue. Previous studies have demonstrated that these barrier properties may be compromised in the progression of glaucoma, yet mechanisms by which this happens have remained incompletely understood. Thus, the goals of this study were to adapt a human pluripotent stem cell (hPSC)-based model of the neurovascular unit to the study of barrier integrity relevant to glaucoma. To achieve this, hPSCs were differentiated into the cell types that contribute to this barrier, including RGCs, astrocytes, and MVECs, then assembled into an established Transwell
® -insert model. The ability of these cell types to contribute to an in vitro barrier model was tested for their ability to recapitulate characteristic barrier properties. Results revealed that barrier properties of MVECs were enhanced when cultured in the presence of RGCs and astrocytes compared to MVECs cultured alone. Conversely, the versatility of this system to model aspects of barrier dysfunction relevant to glaucoma was tested using an hPSC line with a glaucoma-specific Optineurin (E50K) mutation as well as a paired isogenic control, where MVECs then exhibited reduced barrier integrity. To identify factors that could result in barrier dysfunction, results revealed an increased expression of TGFβ2 in glaucoma-associated OPTN(E50K) astrocytes, indicating a potential role for TGFβ2 in disease manifestation. To test this hypothesis, we explored the ability to modulate exogenous TGFβ2 in both isogenic control and OPTN(E50K) experimental conditions. Collectively, the results of this study indicated that the repurposing of this in vitro barrier model for glaucoma reliably mimicked some aspects of barrier dysfunction, and may serve as a platform for drug discovery, as well as a powerful in vitro model to test the consequences of barrier dysfunction upon RGCs in glaucoma., Competing Interests: Declarations Ethics approval and consent to participate Not applicable. Consent for publication Not applicable. Competing interests The authors declare no competing interests., (© 2024. The Author(s).)- Published
- 2024
- Full Text
- View/download PDF
25. SOS1 Inhibition Enhances the Efficacy of KRASG12C Inhibitors and Delays Resistance in Lung Adenocarcinoma.
- Author
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Daley BR, Sealover NE, Finniff BA, Hughes JM, Sheffels E, Gerlach D, Hofmann MH, Kostyrko K, LaMorte JP, Linke A, Beckley Z, Frank AM, Lewis RE, Wilkerson MD, Dalgard C, and Kortum RL
- Abstract
The clinical effectiveness of KRASG12C inhibitors (G12Ci) is limited both by intrinsic and acquired resistance, necessitating the development of combination approaches. Here, we identified targeting proximal receptor tyrosine kinase (RTK) signaling using the SOS1 inhibitor (SOS1i) BI-3406 as a strategy to improve responses to G12Ci treatment. SOS1i enhanced the efficacy of G12Ci and limited rebound RTK/ERK signaling to overcome intrinsic/adaptive resistance, but this effect was modulated by SOS2 protein levels. G12Ci drug tolerant persister (DTP) cells showed up to a 3-fold enrichment of tumor initiating cells (TIC), suggestive of a sanctuary population of G12Ci resistant cells. SOS1i re-sensitized DTPs to G12Ci and inhibited G12C-induced TIC enrichment. Co-mutation of the tumor suppressor KEAP1 limited the clinical effectiveness of G12Ci, and KEAP1 and STK11 deletion increased TIC frequency and accelerated the development of acquired resistance to G12Ci, consistent with clinical G12Ci resistance seen with these co-mutations. Treatment with SOS1i both delayed acquired G12Ci resistance and limited the total number of resistant colonies regardless of KEAP1 and STK11 mutational status. Together, these data suggest that targeting SOS1 could be an effective strategy to both enhance G12Ci efficacy and prevent G12Ci resistance regardless of co-mutations.
- Published
- 2024
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26. Protocol for modeling acquired resistance to targeted therapeutics in adherent and suspension cancer cell lines via in situ resistance assay.
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Sealover NE, Hughes JM, Theard PL, Chatterjee D, Linke AJ, Finniff BA, Daley BR, Lewis RE, and Kortum RL
- Abstract
Acquired resistance to oncogene-targeted therapies is the major driver of mortality for patients with cancer. Here, we present a 6-to-16-week assay to model the development of acquired resistance in adherent and suspension cancer cell lines. We describe steps for determining therapeutic dose, assaying acquired resistance, and testing combination therapies. This protocol is a high-throughput, cost-effective, and scalable method to model acquired drug resistance to established and newly developed therapies. For complete details on the use and execution of this protocol, please refer to Sealover et al.
1 and Theard et al.2 ., Competing Interests: Declaration of interests The authors declare no competing interests., (Published by Elsevier Inc.)- Published
- 2024
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27. Site-initiated adaptations in the implementation of an evidence-based inpatient walking program.
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Hughes JM, Choate AL, Meyer C, Kappler CB, Wang V, Allen KD, Van Houtven CH, Hastings SN, and Zullig LL
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- Humans, United States, Aged, Male, Female, Inpatients, Hospitals, Veterans, United States Department of Veterans Affairs, Veterans, Program Evaluation, Walking
- Abstract
Background: There is increasing recognition of the importance of maximizing program-setting fit in scaling and spreading effective programs. However, in the context of hospital-based mobility programs, there is limited information on how settings could consider local context and modify program characteristics or implementation activities to enhance fit. To fill this gap, we examined site-initiated adaptations to STRIDE, a hospital-based mobility program for older Veterans, at eight Veterans Affairs facilities across the United States., Methods: STRIDE was implemented at eight hospitals in a stepped-wedge cluster randomized trial. During the pre-implementation phase, sites were encouraged to adapt program characteristics to optimize implementation and align with their hospital's resources, needs, and culture. Recommended adaptations included those related to staffing models, marketing, and documentation. To assess the number and types of adaptations, multiple data sources were reviewed, including implementation support notes from site-level support calls and group-based learning collaborative sessions. Adaptations were classified based on the Framework for Reporting Adaptations and Modifications-Enhanced (FRAME), including attention to what was adapted, when, why, and by whom. We reviewed the number and types of adaptations across sites that did and did not sustain STRIDE, defined as continued program delivery during the post-implementation period., Results: A total of 25 adaptations were reported and classified across seven of the eight sites. Adaptations were reported across five areas: program documentation (n = 13), patient eligibility criteria (n = 5), program enhancements (n = 3), staffing model (n = 2), and marketing and recruitment (n = 2). More than one-half of adaptations were planned. Adaptations were common in both sustaining and non-sustaining sites., Conclusions: Adaptations were common within a program designed with flexible implementation in mind. Identifying common areas of planned and unplanned adaptations within a flexible program such as STRIDE may contribute to more efficient and effective national scaling. Future research should evaluate the relationship between adaptations and program implementation., (Published 2024. This article is a U.S. Government work and is in the public domain in the USA.)
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- 2024
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28. Age-related differences in how the shape of alpha and beta oscillations change during reaction time tasks.
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Opie GM, Hughes JM, and Puri R
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- Humans, Female, Male, Adult, Young Adult, Middle Aged, Aged, Principal Component Analysis, Aging physiology, Reaction Time physiology, Beta Rhythm physiology, Alpha Rhythm physiology
- Abstract
While the shape of cortical oscillations is increasingly recognised to be physiologically and functionally informative, its relevance to the aging motor system has not been established. We therefore examined the shape of alpha and beta band oscillations recorded at rest, as well as during performance of simple and go/no-go reaction time tasks, in 33 young (23.3 ± 2.9 years, 27 females) and 27 older (60.0 ± 5.2 years, 23 females) adults. The shape of individual oscillatory cycles was characterised using a recently developed pipeline involving empirical mode decomposition, before being decomposed into waveform motifs using principal component analysis. This revealed four principal components that were uniquely influenced by task and/or age. These described specific dimensions of shape and tended to be modulated during the reaction phase of each task. Our results suggest that although oscillation shape is task-dependent, the nature of this effect is altered by advancing age, possibly reflecting alterations in cortical activity. These outcomes demonstrate the utility of this approach for understanding the neurophysiological effects of ageing., Competing Interests: Declaration of Competing Interest None, (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2024
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29. Hypothalamic-pituitary-ovarian axis suppression is common among women during US Army Basic Combat Training.
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Popp KL, Bozzini BN, Reynoso M, Coulombe J, Guerriere KI, Proctor SP, Castellani CM, Walker LA, Zurinaga N, Kuhn K, Foulis SA, Bouxsein ML, Hughes JM, and Santoro N
- Subjects
- Humans, Female, Prospective Studies, Young Adult, Ovary physiology, Luteinizing Hormone blood, Follicle Stimulating Hormone blood, Body Composition physiology, United States, Menstrual Cycle physiology, Adult, Menstruation physiology, Physical Conditioning, Human physiology, Military Personnel, Hypothalamo-Hypophyseal System physiology, Progesterone blood, Estradiol blood
- Abstract
Objective: Less than half of servicewomen report loss of menses during initial military training. However, self-reported menstrual status may not accurately reflect hypothalamic-pituitary-ovarian (HPO) axis suppression and may underestimate reproductive health consequences of military training. Our aim was to characterise HPO axis function during US Army Basic Combat Training (BCT) in non-hormonal contraceptive-using women and explore potential contributors to HPO axis suppression., Methods: In this 10-week prospective observational study, we enrolled multi-ethnic women entering BCT. Trainees provided daily first-morning voided urine, and weekly blood samples during BCT. Urinary luteinising hormone, follicle stimulating hormone, and metabolites of estradiol and progesterone were measured by chemiluminescent assays (Siemens Centaur XP) to determine hormone patterns and luteal activity. We measured body composition, via dual-energy X-ray absorptiometry, at the beginning and end of BCT., Results: Trainees (n=55) were young (mean (95% CI): 22 (22, 23) years) with average body mass index (23.9 (23.1, 24.7) kg/m
2 ). Most trainees (78%) reported regular menstrual cycles before BCT. During BCT, 23 (42%) trainees reported regular menses. However, only seven trainees (12.5%) had menstrual cycles with evidence of luteal activity (ELA) (ie, presumed ovulation), all with shortened luteal phases. 41 trainees (75%) showed no ELA (NELA), and 7 (12.5%) were categorised as indeterminant. Overall, women gained body mass and lean mass, but lost fat mass during BCT. Changes in body mass and composition appear unrelated to luteal activity., Conclusions: Our findings reveal profound HPO axis suppression with NELA in the majority of women during BCT. This HPO axis suppression occurs among women who report normal menstrual cycles., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2024. No commercial re-use. See rights and permissions. Published by BMJ.)- Published
- 2024
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30. Non-Steroidal Anti-Inflammatory Drugs Do Not Affect the Bone Metabolic Response to Exercise.
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Staab JS, Sczuroski CE, Gwin JA, Geddis AV, Hughes JM, and Roberts BM
- Abstract
Purpose: Non-steroidal anti-inflammatory drugs (NSAID) are associated with increased stress fracture risk, potentially due to inhibiting the adaptive bone formation responses to exercise. This study investigated if a single, maximal dose of three different NSAIDs alters bone formation biomarker response to strenuous exercise., Methods: In a randomized, counter-balanced order, 12 participants (10 male, 2 female), performed four bouts of plyometric jumps, each separated by at least one week. Two hours before exercise, participants consumed either placebo (PLA) or NSAID: Ibuprofen (IBU, 800 mg), celecoxib (CEL, 200 mg), flurbiprofen (FLU, 100 mg). Blood was collected before (PRE), and at 0, 15, 60, 120, and 240 minutes post-exercise. Parathyroid hormone (PTH), ionized calcium (iCa), procollagen type 1 N-terminal propeptide (P1NP), bone alkaline phosphatase (BAP), osteocalcin (OCN), C-terminal telopeptide of type 1 collagen (CTX), tartrate resistant acid phosphatase (TRAP5b), and sclerostin (SCL) were measured. Prostaglandin E2 metabolite (PGE2M) and creatinine (Cr) were measured in urine. Data were analyzed using repeated measures ANOVA and area under the curve analysis (AUC). Data are mean ± SD., Results: There was an exercise effect for P1NP, BAP, OCN, CTX, TRAP5b, SCL, OPG, PTH, and iCa (all p < 0.05), but no NSAID treatment effect for any biomarker (all p > 0.05). AUC analyses were not different for any biomarker (p > 0.05). PGE2M was higher during the PLA trial (322 ± 153 pg/mg Cr, p < 0.05) compared to IBU (135 ± 83 pg/mg), CEL (202 ± 107 pg/mg), and FLU (159 ± 74 pg/mg)., Conclusions: Plyometric exercise induced changes in bone metabolism, but the responses were unaltered by consuming NSAIDs two hours before exercise., Competing Interests: Conflict of Interest and Funding Source: This project was funded by the Military Operational Medicine Research Program grant number MO22100. The authors declare they have nothing to disclose and no conflicts of interest., (Copyright © 2024 Written work prepared by employees of the Federal Government as part of their official duties is, under the U.S. Copyright Act, a “work of the United States Government” for which copyright protection under Title 17 of the United States Code is not available. As such, copyright does not extend to the contributions of employees of the Federal Government.)
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- 2024
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31. Urinary Proteomic Biomarkers of Trabecular Bone Volume Change during Army Basic Combat Training.
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Flanagan SD, Hougland JR, Zeng X, Cantrell PS, Sun M, Jones-Laughner J, Canino MC, Hughes JM, Foulis SA, Taylor KM, Walker LA, Guerriere KI, Sterczala AJ, Connaboy C, Beckner ME, Matheny RW, and Nindl BC
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- Humans, Male, Young Adult, Tibia metabolism, Proteome, Female, Adolescent, Cancellous Bone diagnostic imaging, Biomarkers urine, Proteomics, Military Personnel
- Abstract
Purpose: The purpose of this study is to optimize a dMS-based urinary proteomic technique and evaluate the relationship between urinary proteome content and adaptive changes in bone microarchitecture during BCT., Methods: Urinary proteomes were analyzed with an optimized dMS technique in two groups of 13 recruits ( N = 26) at the beginning (Pre) and end (Post) of BCT. Matched by age (21 ± 4 yr), sex (16 W), and baseline tibial trabecular bone volume fractions (Tb.BV/TV), these groups were distinguished by the most substantial (High) and minimal (Low) improvements in Tb.BV/TV. Differential protein expression was analyzed with mixed permutation ANOVA and false discovery proportion-based adjustment for multiple comparisons., Results: Tibial Tb.BV/TV increased from pre- to post-BCT in High (3.30 ± 1.64%, P < 0.0001) but not Low (-0.35 ± 1.25%, P = 0.4707). The optimized dMS technique identified 10,431 peptides from 1368 protein groups that represented 165 integrative biological processes. Seventy-four urinary proteins changed from pre- to post-BCT ( P = 0.0019), and neutrophil-mediated immunity was the most prominent ontology. Two proteins (immunoglobulin heavy constant gamma 4 and C-type lectin domain family 4 member G) differed from pre- to post-BCT in High and Low ( P = 0.0006)., Conclusions: The dMS technique can identify more than 1000 urinary proteins. At least 74 proteins are responsive to BCT, and other principally immune system-related proteins show differential expression patterns that coincide with adaptive bone formation., (Copyright © 2024 by the American College of Sports Medicine.)
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- 2024
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32. Induction of astrocyte reactivity promotes neurodegeneration in human pluripotent stem cell models.
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Gomes C, Huang KC, Harkin J, Baker A, Hughes JM, Pan Y, Tutrow K, VanderWall KB, Lavekar SS, Hernandez M, Cummins TR, Canfield SG, and Meyer JS
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- Humans, Neurodegenerative Diseases metabolism, Neurodegenerative Diseases pathology, Complement C3 metabolism, Cell Differentiation, Neurons metabolism, Alzheimer Disease pathology, Alzheimer Disease metabolism, Phagocytosis, Blood-Brain Barrier metabolism, Glaucoma pathology, Glaucoma metabolism, Amyotrophic Lateral Sclerosis metabolism, Amyotrophic Lateral Sclerosis pathology, Calcium metabolism, Phenotype, Astrocytes metabolism, Pluripotent Stem Cells metabolism, Pluripotent Stem Cells cytology, Coculture Techniques
- Abstract
Reactive astrocytes are known to exert detrimental effects upon neurons in several neurodegenerative diseases, yet our understanding of how astrocytes promote neurotoxicity remains incomplete, especially in human systems. In this study, we leveraged human pluripotent stem cell (hPSC) models to examine how reactivity alters astrocyte function and mediates neurodegeneration. hPSC-derived astrocytes were induced to a reactive phenotype, at which point they exhibited a hypertrophic profile and increased complement C3 expression. Functionally, reactive astrocytes displayed decreased intracellular calcium, elevated phagocytic capacity, and decreased contribution to the blood-brain barrier. Subsequently, co-culture of reactive astrocytes with a variety of neuronal cell types promoted morphological and functional alterations. Furthermore, when reactivity was induced in astrocytes from patient-specific hPSCs (glaucoma, Alzheimer's disease, and amyotrophic lateral sclerosis), the reactive state exacerbated astrocytic disease-associated phenotypes. These results demonstrate how reactive astrocytes modulate neurodegeneration, significantly contributing to our understanding of a role for reactive astrocytes in neurodegenerative diseases., Competing Interests: Declaration of interests J.S.M. holds a patent related to methods for the retinal differentiation of human pluripotent stem cells used in this study., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2024
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33. The Complex Relationship Between Social and Functional Needs in Frail Older Adults.
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Wright E, Callahan KE, Park H, Dunbar C, Gabbard J, Lenoir K, Hughes JM, Woodard R, and Palakshappa D
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- Humans, Aged, Female, Male, Aged, 80 and over, Interviews as Topic, Social Support, Health Services Needs and Demand, North Carolina, Activities of Daily Living, Needs Assessment, Qualitative Research, Frail Elderly psychology
- Abstract
Background: There has been a growing interest in integrating social and function-focused care into health care settings. Little is known about what older adults perceive as the needs that impact their lives, and the resources to address patients' social and functional needs often exist outside of traditional health care settings., Methods: Our objective was to understand frail older adults' and community organizations' perspectives on what social and functional needs impact older adults' health, the support they receive, and how organizations and health systems could partner to address these needs. We conducted semi-structured interviews with patients and community-based organizations. Patients were aged 65 years or older, frail (electronic frailty index greater than 0.21), and at an increased geographic risk of unmet social needs (Area Deprivation Index greater than or equal to the 75th percentile). Staff were from organizations that provided social and/or functional resources to older adults. We used an inductive content analysis approach and the constant comparative method to analyze the data and identify themes., Results: We interviewed 23 patients and 28 staff from 22 distinct organizations. We found that social, financial, and functional needs were common and highly intertwined among older adults with frailty, but the support they received at home, from their health care providers, and from community organizations was highly varied., Limitations: Our sample was limited to participants from one county, so the results may not be generalizable to other areas. We only inter-viewed organizations and patients with frailty., Conclusions: Health systems and community organizations have distinct areas of expertise, and purposeful collaboration between them could be important in addressing the needs of frail older adults., Competing Interests: Acknowledgments: All authors listed have contributed sufficiently to the project to be included as authors. Portions of this study were presented at the American Geriatric Society Meeting in May 2022. Funding: Dr. Callahan is supported by the National Institute on Aging of the NIH under Award Number K76AG059986. Dr. Gabbard is supported by the National Institute on Aging of the National Institutes of Health under Award Number K23AG070234. Dr. Palakshappa is supported by the National Heart, Lung, and Blood Institute of the National Institutes of Health under Award Number K23HL146902. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. The funding sources did not have any role in the study design, in the collection, analysis, and interpretation of the data, in the writing of the report, or in the decision to submit the article for publication. DP reports personal fees from WellCare of North Carolina outside of the submitted work. Declaration of interests: The authors declare there is no conflict of interest., (Copyright ©2024 by the North Carolina Institute of Medicine and The Duke Endowment. All rights reserved.)
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- 2024
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34. Exploring spatio-temporal changes in coastal recreational fisheries and potential links to extreme weather events.
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Ochwada-Doyle FA, Miles N, Hughes JM, Murphy JJ, Lowry MB, West L, and Taylor MD
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- Animals, Australia, Recreation, Ecosystem, Spatio-Temporal Analysis, Climate Change, Fishes physiology, Humans, SARS-CoV-2 isolation & purification, Fisheries, Extreme Weather, COVID-19 epidemiology
- Abstract
Extreme weather events across coastal environments are expected to increase in frequency under predicted climate change scenarios. These events can impact coastal recreational fisheries and their supporting ecosystems by influencing the productivity of fish stocks or altering behaviours and decision-making among fishers. Using off-site telephone/diary survey data on estuarine and oceanic recreational fishing activity in eastern Australia, we analyse interannual and geographic variability in bream (Acanthopagrus spp) and snapper (Chrysophrys auratus) catch, total effort and total catch per unit effort (CPUE) through a period (2013/2014, 2017/2018 and 2019/2020) that encompassed severe drought, bushfires and flooding. Interacting spatial and temporal differences were detected for bream and may reflect spatial variation in the intensity and extent of some of the extreme weather events. The catch of snapper did not change temporally, providing little evidence that this species' catch may be influenced by the extreme weather events. Independent bioregional and temporal effects on effort were detected, while CPUE only showed significant bioregional differences. Although adverse conditions created by the extreme weather events may have dissuaded fisher participation and impacted effort, we propose that the observed temporal patterns in effort reflect the early influence of socio-economic changes brought on by the COVID-19 pandemic on coastal recreational fishing, over and above the impacts of extreme weather events. This study demonstrates how interrelated ecological, social and economic factors can shape coastal recreational fisheries and facilitates development of management strategies to address future threats to the sector., Competing Interests: NO authors have competing interests., (Copyright: © 2024 Ochwada-Doyle et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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35. Sex- and age-related differences in kinetics and tibial accelerations during military-relevant movement tasks in U.S. Army trainees.
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Johnson CD, Sara LK, Bradach MM, Zeppetelli DJ, Dæhlin TE, Mullineaux DR, Foulis SA, Hughes JM, and Davis IS
- Subjects
- Humans, Male, Female, Young Adult, Age Factors, Sex Factors, Adult, Biomechanical Phenomena, United States, Walking physiology, Military Personnel, Running physiology, Tibia physiology, Acceleration
- Abstract
Lower extremity injuries are prevalent in military trainees, especially in female and older trainees. Modifiable factors that lead to higher injury risk in these subgroups are not clear. The purpose of this study was to identify whether external loading variables during military-relevant tasks differ by age and sex in U.S. Army trainees. Data was collected on 915 trainees in the first week of Basic Combat Training. Participants performed running and ruck marching (walking with 18.1 kg pack) on a treadmill, as well as double-/single-leg drop landings. Variables included: vertical force loading rates, vertical stiffness, first peak vertical forces, peak vertical and resultant tibial accelerations. Comparisons were made between sexes and age groups (young, ≤19 years; middle, 20-24 years; older, ≥25 years). Significant main effects of sex were found, with females showing higher vertical loading rates during ruck marching, and peak tibial accelerations during running and ruck marching (p ≤ 0.03). Males showed higher vertical stiffness during running and peak vertical tibial accelerations during drop landings (p < 0.01). A main effect of age was found for vertical loading rates during running (p = 0.03), however no significant pairwise differences were found between age groups. These findings suggest that higher external loading may contribute to higher overall injury rates in female trainees. Further, higher stiffness during running may contribute to specific injuries, such as Achilles Tendinopathy, that are more prevalent in males. The lack of differences between age groups suggests that other factors contribute more to higher injury rates in older trainees., (© 2024 The Authors. European Journal of Sport Science published by Wiley‐VCH GmbH on behalf of European College of Sport Science. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.)
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- 2024
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36. Sex Does Not Affect Changes in Body Composition and Insulin-Like Growth Factor-I During US Army Basic Combat Training.
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Roberts BM, Staab JS, Caldwell AR, Sczuroski CE, Staab JE, Lutz LJ, Reynoso M, Geddis AV, Taylor KM, Guerriere KI, Walker LA, Hughes JM, and Foulis SA
- Subjects
- Humans, Male, Female, Young Adult, Sex Factors, Absorptiometry, Photon, Adult, United States, Adolescent, Insulin-Like Peptides, Insulin-Like Growth Factor I metabolism, Insulin-Like Growth Factor I analysis, Military Personnel, Body Composition physiology
- Abstract
Abstract: Roberts, BM, Staab, JS, Caldwell, AR, Sczuroski, CE, Staab, JE, Lutz, LJ, Reynoso, M, Geddis, AV, Taylor, KM, Guerriere, KI, Walker, LA, Hughes, JM, and Foulis, SA. Sex does not affect changes in body composition and insulin-like growth factor-I during US Army basic combat training. J Strength Cond Res 38(6): e304-e309, 2024-Insulin-like growth factor 1 (IGF-I) has been implicated as a biomarker of health and body composition. However, whether changes in body composition are associated with changes in IGF-I is unclear. Therefore, we examined the relationship between body composition changes (i.e., fat mass and lean mass) and total serum IGF-I levels in a large cohort of young men ( n = 809) and women ( n = 397) attending US Army basic combat training (BCT). We measured body composition using dual energy x-ray absorptiometry and total serum IGF-I levels during week 1 and week 9 of BCT. We found that pre-BCT lean mass ( r = 0.0504, p = 0.082) and fat mass ( r = 0.0458, p = 0.082) were not associated with pre-BCT IGF-I. Body mass, body mass index, body fat percentage, and fat mass decreased, and lean mass increased during BCT (all p < 0.001). Mean (± SD ) IGF-I increased from pre-BCT (176 ± 50 ng·ml -1 ) to post-BCT (200 ± 50 ng·ml -1 , p < 0.001). Inspection of the partial correlations indicated that even when considering the unique contributions of other variables, increases in IGF-I during BCT were associated with both increased lean mass ( r = 0.0769, p = 0.023) and increased fat mass ( r = 0.1055, p < 0.001) with no sex differences. Taken together, our data suggest that although changes in IGF-I weakly correlated with changes in body composition, IGF-I, in isolation, is not an adequate biomarker for predicting changes in body composition during BCT in US Army trainees., (Copyright © 2024 National Strength and Conditioning Association.)
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- 2024
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37. Lung Metastasectomy: Where Do We Stand? Results from an Italian Multicentric Prospective Database.
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Ambrogi MC, Aprile V, Sanna S, Forti Parri SN, Rizzardi G, Fanucchi O, Valentini L, Italiani A, Morganti R, Cartia CF, Hughes JM, Lucchi M, and Droghetti A
- Abstract
Background/Objectives : The surgical resection of pulmonary metastases is considered a therapeutic option in selected cases. In light of this, we present the results from a national multicenter prospective registry of lung metastasectomy. Methods : This retrospective analysis involves data collected prospectively and consecutively in a national multicentric Italian database, including patients who underwent lung metastasectomy. The primary endpoints were the analysis of morbidity and overall survival (OS), with secondary endpoints focusing on the analysis of potential risk factors affecting both morbidity and OS. Results : A total 470 lung procedures were performed (4 pneumonectomies, 46 lobectomies/bilobectomies, 13 segmentectomies and 407 wedge resections) on 461 patients (258 men and 203 women, mean age of 63.1 years). The majority of patients had metastases from colorectal cancer (45.8%). In most cases (63.6%), patients had only one lung metastasis. A minimally invasive approach was chosen in 143 cases (30.4%). The mean operative time was 118 min, with no reported deaths. Morbidity most frequently consisted of prolonged air leaking and bleeding, but no re-intervention was required. Statistical analysis revealed that morbidity was significantly affected by operative time and pulmonary comorbidities, while OS was significantly affected by disease-free interval (DFI) > 24 months ( p = 0.005), epithelial histology ( p = 0.001) and colorectal histology ( p = 0.004) during univariate analysis. No significant correlation was found between OS and age, gender, surgical approach, surgical extent, surgical device, the number of resected metastases, lesion diameter, the site of lesions and nodal involvement. Multivariate analysis of OS confirmed that only epithelial histology and DFI were risk-factors, with p -values of 0.041 and 0.031, respectively. Conclusions : Lung metastasectomy appears to be a safe procedure, with acceptable morbidity, even with a minimally invasive approach. However, it remains a local treatment of a systemic disease. Therefore, careful attention should be paid to selecting patients who could truly benefit from surgical intervention.
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- 2024
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38. Factors Associated With High-Risk and Low-Risk Bone Stress Injury in Female Runners: Implications for Risk Factor Stratification and Management.
- Author
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Tenforde AS, Ackerman KE, Bouxsein ML, Gaudette L, McCall L, Rudolph SE, Gehman S, Garrahan M, Hughes JM, Outerleys J, Davis IS, and Popp KL
- Abstract
Background: Bone stress injury (BSI) is a common overuse injury in active women. BSIs can be classified as high-risk (pelvis, sacrum, and femoral neck) or low-risk (tibia, fibula, and metatarsals). Risk factors for BSI include low energy availability, menstrual dysfunction, and poor bone health. Higher vertical load rates during running have been observed in women with a history of BSI., Purpose/hypothesis: The purpose of this study was to characterize factors associated with BSI in a population of premenopausal women, comparing those with a history of high-risk or low-risk BSI with those with no history of BSI. It was hypothesized that women with a history of high-risk BSI would be more likely to exhibit lower bone mineral density (BMD) and related factors and less favorable bone microarchitecture compared with women with a history of low-risk BSI. In contrast, women with a history of low-risk BSI would have higher load rates., Study Design: Cross-sectional study; Level of evidence, 3., Methods: Enrolled were 15 women with a history of high-risk BSI, 15 with a history of low-risk BSI, and 15 with no history of BSI. BMD for the whole body, hip, and spine was standardized using z scores on dual-energy x-ray absorptiometry. High-resolution peripheral quantitative computed tomography was used to quantify bone microarchitecture at the radius and distal tibia. Participants completed surveys characterizing factors that influence bone health-including sleep, menstrual history, and eating behaviors-utilizing the Eating Disorder Examination Questionnaire (EDE-Q). Each participant completed a biomechanical assessment using an instrumented treadmill to measure load rates before and after a run to exertion., Results: Women with a history of high-risk BSI had lower spine z scores than those with low-risk BSI (-1.04 ± 0.76 vs -0.01 ± 1.15; P < .05). Women with a history of high-risk BSI, compared with low-risk BSI and no BSI, had the highest EDE-Q subscores for Shape Concern (1.46 ± 1.28 vs 0.76 ± 0.78 and 0.43 ± 0.43) and Eating Concern (0.55 ± 0.75 vs 0.16 ± 0.38 and 0.11 ± 0.21), as well as the greatest difference between minimum and maximum weight at current height (11.3 ± 5.4 vs 7.7 ± 2.9 and 7.6 ± 3.3 kg) ( P < .05 for all). Women with a history of high-risk BSI were more likely than those with no history of BSI to sleep <7 hours on average per night during the week (80% vs 33.3%; P < .05). The mean and instantaneous vertical load rates were not different between groups., Conclusion: Women with a history of high-risk BSI were more likely to exhibit risk factors for poor bone health, including lower BMD, while load rates did not distinguish women with a history of BSI., Competing Interests: One or more of the authors has declared the following potential conflict of interest or source of funding: Funding was received from the Henry M. Jackson Foundation for the Advancement of Military Medicine Inc, the United States Department of Defense and United States Army, and the American Medical Society for Sports Medicine. K.E.A. has received consulting fees from Hologic. AOSSM checks author disclosures against the Open Payments Database (OPD). AOSSM has not conducted an independent investigation on the OPD and disclaims any liability or responsibility relating thereto. Ethical approval for this study was obtained from Mass General Brigham Inc (ref No. 2016P001695)., (© The Author(s) 2024.)
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- 2024
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39. NSAIDs do not prevent exercise-induced performance deficits or alleviate muscle soreness: A placebo-controlled randomized, double-blinded, cross-over study.
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Roberts BM, Sczuroski CE, Caldwell AR, Zeppetelli DJ, Smith NI, Pecorelli VP, Gwin JA, Hughes JM, and Staab JS
- Subjects
- Humans, Double-Blind Method, Adult, Young Adult, Male, Female, Adolescent, Athletic Performance physiology, Celecoxib administration & dosage, Plyometric Exercise, Heart Rate drug effects, Exercise physiology, Cross-Over Studies, Myalgia prevention & control, Myalgia drug therapy, Anti-Inflammatory Agents, Non-Steroidal administration & dosage, Anti-Inflammatory Agents, Non-Steroidal therapeutic use, Ibuprofen administration & dosage, Ibuprofen therapeutic use, Flurbiprofen administration & dosage
- Abstract
Non-steroidal anti-inflammatory drugs (NSAIDs) are frequently consumed by athletes to manage muscle soreness, expedite recovery, or improve performance. Despite the prevalence of NSAID use, their effects on muscle soreness and performance, particularly when administered prophylactically, remain unclear. This randomized, double-blind, counter-balanced, crossover study examined the effect of consuming a single dose of each of three NSAIDs (celecoxib, 200 mg; ibuprofen, 800 mg; flurbiprofen, 100 mg) or placebo 2 h before on muscle soreness and performance following an acute plyometric training session. Twelve healthy adults, aged 18-42 years, completed a standardized plyometric exercise session consisting of 10 sets of 10 repetitions at 40 % 1-repetition maximum (1RM) on a leg press device. During exercise, total work, rating of perceived exertion, and heart rate were measured. Maximum voluntary contraction force (MVC), vertical jump height, and muscle soreness were measured before exercise and 4-h and 24-h post-exercise. We found no significant differences in total work, heart rate, or rating of perceived exertion between treatments. Additionally, no significant differences in muscle soreness or vertical jump were observed between treatments. Ibuprofen and flurbiprofen did not prevent decrements in MVC, but celecoxib attenuated decreases in MVC 4-h post exercise (p < 0.05). This study suggests that athletes may not benefit from prophylactic ibuprofen or flurbiprofen treatment to prevent discomfort or performance decrements associated with exercise, but celecoxib may mitigate short-term performance decrements., Competing Interests: Declaration of interest statement The authors declare no conflicts of interest., (Published by Elsevier Ltd.)
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- 2024
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40. A human pluripotent stem cell-derived in vitro model of the blood-brain barrier in cerebral malaria.
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Gopinadhan A, Hughes JM, Conroy AL, John CC, Canfield SG, and Datta D
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- Humans, Endothelial Cells metabolism, Cells, Cultured, Coculture Techniques, Models, Biological, Blood-Brain Barrier metabolism, Malaria, Cerebral metabolism, Induced Pluripotent Stem Cells
- Abstract
Background: Blood-brain barrier (BBB) disruption is a central feature of cerebral malaria (CM), a severe complication of Plasmodium falciparum (Pf) infections. In CM, sequestration of Pf-infected red blood cells (Pf-iRBCs) to brain endothelial cells combined with inflammation, hemolysis, microvasculature obstruction and endothelial dysfunction mediates BBB disruption, resulting in severe neurologic symptoms including coma and seizures, potentially leading to death or long-term sequelae. In vitro models have advanced our knowledge of CM-mediated BBB disruption, but their physiological relevance remains uncertain. Using human induced pluripotent stem cell-derived brain microvascular endothelial cells (hiPSC-BMECs), we aimed to develop a novel in vitro model of the BBB in CM, exhibiting enhanced barrier properties., Methods: hiPSC-BMECs were co-cultured with HB3var03 strain Pf-iRBCs up to 9 h. Barrier integrity was measured using transendothelial electrical resistance (TEER) and sodium fluorescein permeability assays. Localization and expression of tight junction (TJ) proteins (occludin, zonula occludens-1, claudin-5), cellular adhesion molecules (ICAM-1, VCAM-1), and endothelial surface markers (EPCR) were determined using immunofluorescence imaging (IF) and western blotting (WB). Expression of angiogenic and cell stress markers were measured using multiplex proteome profiler arrays., Results: After 6-h of co-culture with Pf-iRBCs, hiPSC-BMECs showed reduced TEER and increased sodium fluorescein permeability compared to co-culture with uninfected RBCs, indicative of a leaky barrier. We observed disruptions in localization of occludin, zonula occludens-1, and claudin-5 by IF, but no change in protein expression by WB in Pf-iRBC co-cultures. Expression of ICAM-1 and VCAM-1 but not EPCR was elevated in hiPSC-BMECs with Pf-iRBC co-culture compared to uninfected RBC co-culture. In addition, there was an increase in expression of angiogenin, platelet factor-4, and phospho-heat shock protein-27 in the Pf-iRBCs co-culture compared to uninfected RBC co-culture., Conclusion: These findings demonstrate the validity of our hiPSC-BMECs based model of the BBB, that displays enhanced barrier integrity and appropriate TJ protein localization. In the hiPSC-BMEC co-culture with Pf-iRBCs, reduced TEER, increased paracellular permeability, changes in TJ protein localization, increase in expression of adhesion molecules, and markers of angiogenesis and cellular stress all point towards a novel model with enhanced barrier properties, suitable for investigating pathogenic mechanisms underlying BBB disruption in CM., (© 2024. The Author(s).)
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- 2024
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41. Unravelling the mystery of endemic versus translocated populations of the endangered Australian lungfish (Neoceratodus forsteri).
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Biello R, Ghirotto S, Schmidt DJ, Fuselli S, Roberts DT, Espinoza T, Hughes JM, and Bertorelle G
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- Animals, Bayes Theorem, Australia, Queensland, Fishes genetics
- Abstract
The Australian lungfish is a primitive and endangered representative of the subclass Dipnoi. The distribution of this species is limited to south-east Queensland, with some populations considered endemic and others possibly descending from translocations in the late nineteenth century shortly after European discovery. Attempts to resolve the historical distribution of this species have met with conflicting results based on descriptive genetic studies. Understanding if all populations are endemic or some are the result of, or influenced by, translocation events, has implications for conservation management. In this work, we analysed the genetic variation at three types of markers (mtDNA genomes, 11 STRs and 5196 nuclear SNPs) using the approximate Bayesian computation (ABC) algorithm to compare several demographic models. We postulated different contributions of Mary River and Burnett River gene pools into the Brisbane River and North Pine River populations, related to documented translocation events. We ran the analysis for each marker type separately, and we also estimated the posterior probabilities of the models combining the markers. Nuclear SNPs have the highest power to correctly identify the true model among the simulated datasets (where the model was known), but different marker types typically provided similar answers. The most supported demographic model able to explain the real dataset implies that an endemic gene pool is still present in the Brisbane and North Pine Rivers and coexists with the gene pools derived from past documented translocation events. These results support the view that ABC modelling can be useful to reconstruct complex historical translocation events with contemporary implications, and will inform ongoing conservation efforts for the endangered and iconic Australian lungfish., (© 2024 John Wiley & Sons Ltd.)
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- 2024
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42. The Association of Frailty and Neighborhood Disadvantage with Emergency Department Visits and Hospitalizations in Older Adults.
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Lenoir KM, Paul R, Wright E, Palakshappa D, Pajewski NM, Hanchate A, Hughes JM, Gabbard J, Wells BJ, Dulin M, Houlihan J, and Callahan KE
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- Humans, Female, Aged, Male, Emergency Room Visits, Retrospective Studies, Hospitalization, Neighborhood Characteristics, Frailty epidemiology
- Abstract
Background: Risk stratification and population management strategies are critical for providing effective and equitable care for the growing population of older adults in the USA. Both frailty and neighborhood disadvantage are constructs that independently identify populations with higher healthcare utilization and risk of adverse outcomes., Objective: To examine the joint association of these factors on acute healthcare utilization using two pragmatic measures based on structured data available in the electronic health record (EHR)., Design: In this retrospective observational study, we used EHR data to identify patients aged ≥ 65 years at Atrium Health Wake Forest Baptist on January 1, 2019, who were attributed to affiliated Accountable Care Organizations. Frailty was categorized through an EHR-derived electronic Frailty Index (eFI), while neighborhood disadvantage was quantified through linkage to the area deprivation index (ADI). We used a recurrent time-to-event model within a Cox proportional hazards framework to examine the joint association of eFI and ADI categories with healthcare utilization comprising emergency visits, observation stays, and inpatient hospitalizations over one year of follow-up., Key Results: We identified a cohort of 47,566 older adults (median age = 73, 60% female, 12% Black). There was an interaction between frailty and area disadvantage (P = 0.023). Each factor was associated with utilization across categories of the other. The magnitude of frailty's association was larger than living in a disadvantaged area. The highest-risk group comprised frail adults living in areas of high disadvantage (HR 3.23, 95% CI 2.99-3.49; P < 0.001). We observed additive effects between frailty and living in areas of mid- (RERI 0.29; 95% CI 0.13-0.45; P < 0.001) and high (RERI 0.62, 95% CI 0.41-0.83; P < 0.001) neighborhood disadvantage., Conclusions: Considering both frailty and neighborhood disadvantage may assist healthcare organizations in effectively risk-stratifying vulnerable older adults and informing population management strategies. These constructs can be readily assessed at-scale using routinely collected structured EHR data., (© 2023. The Author(s), under exclusive licence to Society of General Internal Medicine.)
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- 2024
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43. Evaluation of strategies to support implementation of a hospital walking program: protocol for a type III effectiveness-implementation hybrid trial.
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Kappler CB, Coffman CJ, Stechuchak KM, Choate A, Meyer C, Zullig LL, Hughes JM, Drake C, Sperber NR, Kaufman BG, Van Houtven CH, Allen KD, and Hastings SN
- Abstract
Background: STRIDE is a supervised walking program designed to address the negative consequences of immobility during hospitalization for older adults. In an 8-hospital stepped wedge randomized controlled trial, STRIDE was associated with reduced odds of hospital discharge to skilled nursing facility. STRIDE has the potential to become a system-wide approach to address hospital-associated disability in Veteran's Affairs; however, critical questions remain about how best to scale and sustain the program. The overall study goal is to compare the impact of two strategies on STRIDE program penetration (primary), fidelity, and adoption implementation outcomes., Methods: Replicating Effective Programs will be used as a framework underlying all implementation support activities. In a parallel, cluster randomized trial, we will use stratified blocked randomization to assign hospitals (n = 32) to either foundational support, comprised of standard, low-touch activities, or enhanced support, which includes the addition of tailored, high-touch activities if hospitals do not meet STRIDE program benchmarks at 6 and 8 months following start date. All hospitals begin with foundational support for 6 months until randomization occurs. The primary outcome is implementation penetration defined as the proportion of eligible hospitalizations with ≥ 1 STRIDE walks at 10 months. Secondary outcomes are fidelity and adoption with all implementation outcomes additionally examined at 13 and 16 months. Fidelity will be assessed for STRIDE hospitalizations as the percentage of eligible hospital days with "full dose" of the program, defined as two or more documented walks or one walk for more than 5 min. Program adoption is a binary outcome defined as ≥ 5 patients with a STRIDE walk or not. Analyses will also include patient-level effectiveness outcomes (e.g., discharge to nursing home, length of stay) and staffing and labor costs. We will employ a convergent mixed-methods approach to explore and understand pre-implementation contextual factors related to differences in hospital-level adoption., Discussion: Our study results will dually inform best practices for promoting successful implementation of an evidence-based hospital-based walking program. This information may support other programs by advancing our understanding of how to apply and scale-up national implementation strategies., Trial Registration: This study was registered on June 1, 2021, at ClinicalTrials.gov (identifier NCT04868656 )., (© 2024. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
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- 2024
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44. Travelling Waves in a PDE-ODE Coupled Model of Cellulolytic Biofilms with Nonlinear Diffusion.
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Mitra K, Hughes JM, Sonner S, Eberl HJ, and Dockery JD
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We analyze travelling wave (TW) solutions for nonlinear systems consisting of an ODE coupled to a degenerate PDE with a diffusion coefficient that vanishes as the solution tends to zero and blows up as it approaches its maximum value. Stable TW solutions for such systems have previously been observed numerically as well as in biological experiments on the growth of cellulolytic biofilms. In this work, we provide an analytical justification for these observations and prove existence and stability results for TW solutions of such models. Using the TW ansatz and a first integral, the system is reduced to an autonomous dynamical system with two unknowns. Analysing the system in the corresponding phase-plane, the existence of a unique TW is shown, which possesses a sharp front and a diffusive tail, and is moving with a constant speed. The linear stability of the TW in two space dimensions is proven under suitable assumptions on the initial data. Finally, numerical simulations are presented that affirm the theoretical predictions on the existence, stability, and parametric dependence of the travelling waves., Competing Interests: Conflict of interestWe are not aware of any conflict of interests related to this work., (© The Author(s) 2023.)
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- 2024
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45. Organizational Characteristics of Hospitals Meeting STRIDE Program Adoption Benchmarks to Support Mobility for Hospitalized Persons.
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Zullig LL, Drake C, Webster A, Tucker M, Choate A, Stechuchak KM, Coffman CJ, Kappler CB, Meyer C, Van Houtven CH, Allen KD, Hughes JM, Sperber N, and Hastings SN
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- Humans, United States, Hospitals, Veterans organization & administration, Length of Stay, United States Department of Veterans Affairs organization & administration, Organizational Culture, Walking, Hospitalization, Mobility Limitation, Benchmarking
- Abstract
There are few validated contextual measures predicting adoption of evidence-based programs. Variation in context at clinical sites can hamper dissemination. We examined organizational characteristics of Veterans Affairs hospitals implementing STRIDE, a hospital walking program, and characteristics' influences on program adoption. Using a parallel mixed-method design, we describe context and organizational characteristics by program adoption. Organizational characteristics included: organizational resilience, implementation climate, organizational readiness to implement change, highest complexity sites versus others, material support, adjusted length of stay (LOS) above versus below national median, and improvement experience. We collected intake forms at hospital launch and qualitative interviews with staff members at 4 hospitals that met the initial adoption benchmark, defined as completing supervised walks with 5+ unique hospitalized Veterans during months 5 to 6 after launch with low touch implementation support. We identified that 31% (n = 11 of 35) of hospitals met adoption benchmarks. Seven percent of highest complexity hospitals adopted compared to 48% with lower complexity. Forty-three percent that received resources adopted compared to 29% without resources. Thirty-six percent of hospitals with above-median LOS adopted compared to 23% with below-median. Thirty-five percent with at least some implementation experience adopted compared to 0% with very little to no experience. Adopters reported higher organizational resilience than non-adopters (mean = 23.5 [SD = 2.6] vs 22.7 [SD = 2.6]). Adopting hospitals reported greater organizational readiness to change than those that did not (mean = 4.2 [SD = 0.5] vs 3.8 [SD = 0.6]). Qualitatively, all sites reported that staff were committed to implementing STRIDE. Participants reported additional barriers to adoption including challenges with staffing and delays associated with hiring staff. Adopters reported that having adequate staff facilitated implementation. Implementation climate did not have an association with meeting STRIDE program adoption benchmarks in this study. Contextual factors which may be simple to assess, such as resource availability, may influence adoption of new programs without intensive implementation support., Competing Interests: Declaration of Conflicting InterestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
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- 2024
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46. SOS1 inhibition enhances the efficacy of and delays resistance to G12C inhibitors in lung adenocarcinoma.
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Daley BR, Sealover NE, Sheffels E, Hughes JM, Gerlach D, Hofmann MH, Kostyrko K, Mair B, Linke A, Beckley Z, Frank A, Dalgard C, and Kortum RL
- Abstract
Clinical effectiveness of KRAS G12C inhibitors (G12Cis) is limited both by intrinsic and acquired resistance, necessitating the development of combination approaches. We found that targeting proximal receptor tyrosine kinase (RTK) signaling using the SOS1 inhibitor (SOS1i) BI-3406 both enhanced the potency of and delayed resistance to G12Ci treatment, but the extent of SOS1i effectiveness was modulated by both SOS2 expression and the specific mutational landscape. SOS1i enhanced the efficacy of G12Ci and limited rebound RTK/ERK signaling to overcome intrinsic/adaptive resistance, but this effect was modulated by SOS2 protein levels. Survival of drug-tolerant persister (DTP) cells within the heterogeneous tumor population and/or acquired mutations that reactivate RTK/RAS signaling can lead to outgrowth of tumor initiating cells (TICs) that drive therapeutic resistance. G12Ci drug tolerant persister cells showed a 2-3-fold enrichment of TICs, suggesting that these could be a sanctuary population of G12Ci resistant cells. SOS1i re-sensitized DTPs to G12Ci and inhibited G12C-induced TIC enrichment. Co-mutation of the tumor suppressor KEAP1 limits the clinical effectiveness of G12Cis, and KEAP1 and STK11 deletion increased TIC frequency and accelerated the development of acquired resistance to G12Ci in situ . SOS1i both delayed acquired G12Ci resistance and limited the total number of resistant colonies regardless of KEAP1 and STK11 mutational status. These data suggest that SOS1i could be an effective strategy to both enhance G12Ci efficacy and prevent G12Ci resistance regardless of co-mutations.
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- 2023
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47. In situ modeling of acquired resistance to RTK/RAS-pathway-targeted therapies.
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Sealover NE, Theard PT, Hughes JM, Linke AJ, Daley BR, and Kortum RL
- Abstract
Intrinsic and acquired resistance limit the window of effectiveness for oncogene-targeted cancer therapies. Here, we describe an in situ resistance assay (ISRA) that reliably models acquired resistance to RTK/RAS-pathway-targeted therapies across cell lines. Using osimertinib resistance in EGFR -mutated lung adenocarcinoma (LUAD) as a model system, we show that acquired osimertinib resistance can be significantly delayed by inhibition of proximal RTK signaling using SHP2 inhibitors. Isolated osimertinib-resistant populations required SHP2 inhibition to resensitize cells to osimertinib and reduce MAPK signaling to block the effects of enhanced activation of multiple parallel RTKs. We additionally modeled resistance to targeted therapies including the KRAS
G12C inhibitors adagrasib and sotorasib, the MEK inhibitor trametinib, and the farnesyl transferase inhibitor tipifarnib. These studies highlight the tractability of in situ resistance assays to model acquired resistance to targeted therapies and provide a framework for assessing the extent to which synergistic drug combinations can target acquired drug resistance., Competing Interests: The authors declare no competing interests.- Published
- 2023
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48. SOS1 and KSR1 modulate MEK inhibitor responsiveness to target resistant cell populations based on PI3K and KRAS mutation status.
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Daley BR, Vieira HM, Rao C, Hughes JM, Beckley ZM, Huisman DH, Chatterjee D, Sealover NE, Cox K, Askew JW, Svoboda RA, Fisher KW, Lewis RE, and Kortum RL
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- Humans, Cell Line, Tumor, Class I Phosphatidylinositol 3-Kinases genetics, MAP Kinase Kinase Kinases metabolism, Mitogen-Activated Protein Kinase Kinases metabolism, Mutation, Protein Kinase Inhibitors pharmacology, Proto-Oncogene Proteins p21(ras) genetics, Proto-Oncogene Proteins p21(ras) metabolism, Receptor Protein-Tyrosine Kinases metabolism, Colorectal Neoplasms drug therapy, Colorectal Neoplasms genetics, Colorectal Neoplasms pathology, Phosphatidylinositol 3-Kinases metabolism
- Abstract
KRAS is the most commonly mutated oncogene. Targeted therapies have been developed against mediators of key downstream signaling pathways, predominantly components of the RAF/MEK/ERK kinase cascade. Unfortunately, single-agent efficacy of these agents is limited both by intrinsic and acquired resistance. Survival of drug-tolerant persister cells within the heterogeneous tumor population and/or acquired mutations that reactivate receptor tyrosine kinase (RTK)/RAS signaling can lead to outgrowth of tumor-initiating cells (TICs) and drive therapeutic resistance. Here, we show that targeting the key RTK/RAS pathway signaling intermediates SOS1 (Son of Sevenless 1) or KSR1 (Kinase Suppressor of RAS 1) both enhances the efficacy of, and prevents resistance to, the MEK inhibitor trametinib in KRAS -mutated lung (LUAD) and colorectal (COAD) adenocarcinoma cell lines depending on the specific mutational landscape. The SOS1 inhibitor BI-3406 enhanced the efficacy of trametinib and prevented trametinib resistance by targeting spheroid-initiating cells in KRAS
G12/G13 -mutated LUAD and COAD cell lines that lacked PIK3CA comutations. Cell lines with KRASQ61 and/or PIK3CA mutations were insensitive to trametinib and BI-3406 combination therapy. In contrast, deletion of the RAF/MEK/ERK scaffold protein KSR1 prevented drug-induced SIC upregulation and restored trametinib sensitivity across all tested KRAS mutant cell lines in both PIK3CA -mutated and PIK3CA wild-type cancers. Our findings demonstrate that vertical inhibition of RTK/RAS signaling is an effective strategy to prevent therapeutic resistance in KRAS -mutated cancers, but therapeutic efficacy is dependent on both the specific KRAS mutant and underlying comutations. Thus, selection of optimal therapeutic combinations in KRAS -mutated cancers will require a detailed understanding of functional dependencies imposed by allele-specific KRAS mutations.- Published
- 2023
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49. Utility of HR-pQCT in detecting training-induced changes in healthy adult bone morphology and microstructure.
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Sekel NM, Hughes JM, Sterczala AJ, Mroz KH, Lovalekar M, Cauley J, Greeves JP, and Nindl BC
- Abstract
Healthy bone adjusts its traits in an exceptionally coordinated, compensatory process. Recent advancements in skeletal imaging via High-Resolution Peripheral Quantitative Computed Tomography (HR-pQCT) allows for the in vivo 3-dimensional and longitudinal quantification of bone density, microarchitecture, geometry, and parameters of mechanical strength in response to varying strain stimuli including those resulting from exercise or military training. Further, the voxel size of 61 microns has the potential to capture subtle changes in human bone in as little as 8 weeks. Given the typical time course of bone remodeling, short-term detection of skeletal changes in bone microstructure and morphology is indicative of adaptive bone formation, the deposition of new bone formation, uncoupled from prior resorption, that can occur at mechanistically advantageous regions. This review aims to synthesize existing training-induced HR-pQCT data in three distinct populations of healthy adults excluding disease states, pharmacological intervention and nutritional supplementation. Those included are: 1) military basic or officer training 2) general population and 3) non-osteoporotic aging. This review aims to further identify similarities and contrasts with prior modalities and cumulatively interpret results within the scope of bone functional adaptation., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Sekel, Hughes, Sterczala, Mroz, Lovalekar, Cauley, Greeves and Nindl.)
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- 2023
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50. Group physical therapy for knee osteoarthritis: protocol for a hybrid type III effectiveness-implementation trial.
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Webb S, Drake C, Coffman CJ, Sullivan C, Sperber N, Tucker M, Zullig LL, Hughes JM, Kaufman BG, Pura JA, Anderson L, Hastings SN, Van Houtven CH, Abbate LM, Hoenig H, Ballengee LA, Wang V, and Allen KD
- Abstract
Background: Knee osteoarthritis (OA) is a leading cause of chronic pain and disability and one of the most common conditions treated in outpatient physical therapy (PT). Because of the high and growing prevalence of knee OA, there is a need for efficient approaches for delivering exercise-based PT to patients with knee OA. A prior randomized controlled trial (RCT) showed that a 6-session Group Physical Therapy Program for Knee OA (Group PT) yields equivalent or greater improvements in pain and functional outcomes compared with traditional individual PT, while requiring fewer clinician hours per patient to deliver. This manuscript describes the protocol for a hybrid type III effectiveness-implementation trial comparing two implementation packages to support delivery of Group PT., Methods: In this 12-month embedded trial, a minimum of 16 Veterans Affairs Medical Centers (VAMCs) will be randomized to receive one of two implementation support packages for their Group PT programs: a standard, low-touch support based on Replicating Effective Programs (REP) versus enhanced REP (enREP), which adds tailored, high-touch support if sites do not meet Group PT adoption and sustainment benchmarks at 6 and 9 months following launch. Implementation outcomes, including penetration (primary), adoption, and fidelity, will be assessed at 6 and 12 months (primary assessment time point). Additional analyses will include patient-level effectiveness outcomes (pain, function, satisfaction) and staffing and labor costs. A robust qualitative evaluation of site implementation context and experience, as well as site-led adaptations to the Group PT program, will be conducted., Discussion: To our knowledge, this study is the first to evaluate the impact of tailored, high-touch implementation support on implementation outcomes when compared to standardized, low-touch support for delivering a PT-based intervention. The Group PT program has strong potential to become a standard offering for PT, improving function and pain-related outcomes for patients with knee OA. Results will provide information regarding the effectiveness and value of this implementation approach and a deeper understanding of how healthcare systems can support wide-scale adoption of Group PT., Trial Registration: This study was registered on March 7, 2022 at ClinicalTrials.gov (identifier NCT05282927 )., (© 2023. BioMed Central Ltd.)
- Published
- 2023
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