11 results on '"Harding, J. H."'
Search Results
2. Evaluation of correlated studies using liquid cell and cryo‐transmission electron microscopy: Hydration of calcium sulphate and the phase transformation pathways of bassanite to gypsum
- Author
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Ilett, M., primary, Freeman, H. M., additional, Aslam, Z., additional, Galloway, J. M., additional, Klebl, D. P., additional, Muench, S. P., additional, McPherson, I. J., additional, Cespedes, O., additional, Kim, Y‐Y., additional, Meldrum, F. C., additional, Yeandel, S. R., additional, Freeman, C. L., additional, Harding, J. H., additional, and Brydson, R. M. D., additional
- Published
- 2022
- Full Text
- View/download PDF
3. Multiple cascade radiation damage simulations of pyrochlore
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Archer, A., primary, Foxhall, H. R., additional, Allan, N. L., additional, Shearer, J. R. W., additional, Gunn, D. S. D., additional, Harding, J. H., additional, Todorov, I. T., additional, Travis, K. P., additional, and Purton, J. A., additional
- Published
- 2020
- Full Text
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4. The water–amorphous calcium carbonate interface and its interactions with amino acids
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Innocenti Malini, R., Finney, A. R., Hall, S. A., Freeman, C. L., and Harding, J. H.
- Abstract
Arginine, glycine, aspartic, and glutamic acid all display favorable free energies of binding on hydrous and anhydrous amorphous calcium carbonate. These surfaces display an increase mobility of the ions at the interface with the solution, allowing these to remodel around the incoming molecule. Results analyzing the effect of the interface between amorphous calcium carbonate and the solution are also presented.
- Published
- 2018
5. Interaction of stable aggregates drives the precipitation of calcium phosphate in supersaturated solutions
- Author
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Innocenti Malini, R., primary, L. Freeman, C., additional, and Harding, J. H., additional
- Published
- 2019
- Full Text
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6. Multiple cascade radiation damage simulations of pyrochlore.
- Author
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Archer, A., Foxhall, H. R., Allan, N. L., Shearer, J. R. W., Gunn, D. S. D., Harding, J. H., Todorov, I. T., Travis, K. P., and Purton, J. A.
- Subjects
PYROCHLORE ,RADIATION damage ,ION mobility ,MOLECULAR dynamics ,AMORPHIZATION ,KINETIC energy ,URANIUM - Abstract
We report molecular dynamics simulations of multiple radiation damage cascades in the pyrochlores Gd
2 Ti2 O7 and Gd2 Zr2 O7 and the solid solution Gd2 (Zrx Ti1–x )2 O7 (x = 0.25, 0.50, 0.75). Using a simulation cell of 360,448 atoms, for each compound 2200 decay events are simulated over a total time of 10 ns, with each recoiling uranium atom (primary-knock-on atom) assigned initial kinetic energy of 5 keV. The structures generated are analysed using Steinhardt local order parameters. There is a large increase in volume for the Ti pyrochlore associated with a transition to an amorphous structure which resembles the melt while preserving the local environment of the Ti. The calculated dose for amorphisation is 20 eV atom−1 which compares well with experiment overlap of cascade and damage accumulation drives the amorphisation suppressessing the healing mechanisms. The behaviour of the zirconate is different – the substantial anion disorder produced by each recoil event is followed by healing and reversion to the parent pyrochlore. In the solid solution the onset of amorphisation is delayed to later times on increasing the Zr concentration and overall swelling reduced. Our simulations highlight the importance of ion mobility, associated with the weaker Zr–O bonds, in healing. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
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7. The Water–Amorphous Calcium Carbonate Interface and Its Interactions with Amino Acids
- Author
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Innocenti Malini, R., primary, Finney, A. R., additional, Hall, S. A., additional, Freeman, C. L., additional, and Harding, J. H., additional
- Published
- 2017
- Full Text
- View/download PDF
8. The Water-Amorphous Calcium Carbonate Interface and Its Interactions with Amino Acids.
- Author
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Malini, R. Innocenti, Finney, A. R., Hall, S. A., Freeman, C. L., and Harding, J. H.
- Published
- 2017
- Full Text
- View/download PDF
9. Multi-scale simulation of electroceramics
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Ward, Robyn Elizabeth, Harding, J. H., and Freeman, C. L.
- Subjects
620 - Abstract
This thesis used a range of simulation techniques to investigate the various effects rareearth element doping has on barium titanate with a focus on their ability to increase the lifetime of such ceramics. Finite element simulation was used to look for a relationship between user generated regional input permittivities, conductivities and microstructures based on experimental core-shell microstructures formed in rare-earth element doped barium titanate and the simulated bulk output properties. No simple analytical relationship was found. Input properties for more local regions are needed for accurate simulations. These cannot easily be obtained from experiment. Experimental spectra (XRD and TEM) of perovskites were simulated from molecular dynamics simulations. The simulated spectra include dynamical information. The spectra along with the in-house analytical PALAMEDES code were used to interpret tilt features in the simulated systems. The code gives quantitative values for tilt and volumes for A and B sites in the system and identifies tilt phase. Static simulations of doped barium titanate demonstrate the affinity of rare-earth dopants to form specific compensation schemes. The simulation results agree with experiment. Lifetime improvements due to rare-earth dopants have been theorised to be due to oxygen vacancy trapping. Further simulations show that all mid-size trivalent rare-earth elements can strongly trap oxygen vacancies. The differences seen in lifetime improvements between rare-earths is due to their distribution and compensation schemes they adopt. Advanced sampling techniques were used to look at self-diffusion and rare-earth diffusion in barium titanate. The applicability of Mean Squared Displacement, Steered MD, Umbrella sampling and Metadynamics to solid-state systems is discussed. The selfdiffusion results agreed with available experimental values. Dysprosium was found to be the most mobile rare-earth of those investigated in barium titanate lattice suggesting that a combination of its mobility and preference to dope in a self-compensatory manner is the reason for its superior lifetime improvements.
- Published
- 2018
10. Simulation of impedance spectroscopy in electroceramics using a finite element method
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Heath, J. P., Dean, J. S., Sinclair, D. C., and Harding, J. H.
- Subjects
620 - Abstract
Currently the electronic industry has a market demand for over a billion multi layer ceramic capacitors per annum. Electrical characterisation of the electroceramic component of these devices is required for optimisation of existing materials and to aid material discovery. Impedance spectroscopy is a technique that is commonly used to characterise the electrical properties of electroceramics. Experimental data is analysed using an equivalent circuit (usually some combination of resistors and capacitors connected in series and/or in parallel) to extract resistances and capacitances for specific components of a microstructure, e.g. bulk (grains), core-shell grains and grain boundaries. The ability to extract this information depends on the use of an appropriate equivalent circuit and on how to analyse the impedance data. Here an investigation of how the physical microstructure of an electroceramic can affect its impedance response using finite element modelling (FEM) is presented. By using a simulation-based approach the simulator can use the same methodology that would be used experimentally to obtain information on different microstructural components with prior knowledge of what the values should be, since the simulator has defined them. By comparing the values extracted to those originally inputted into the simulation allows the accuracy of the data analysis methods used to extract information to be evaluated and under what conditions these methods can be applied. The results presented in this thesis (chapters four to six) are divided into three studies. Chapter four considers the characterisation of core-shell grain microstructures by estimating core and shell volume fractions from the core to shell capacitance ratio. FEM simulation of the impedance response of a core-shell microstructure allows the capacitance ratio of the core and shell to be obtained from the electric modulus formalism. Several microstructures were considered: a nested cube; nested truncated octahedra; and a series layer model (SLM). The first two microstructures are approximations for a core-shell grain and were simulated using FEM. The layer model is an idealised case that can be solved analytically and with FEM for validation purposes. Here the relative permittivity of the core and shell regions is fixed at a value of 100 and the core has a conductivity three orders of magnitude greater than the shell. As the core volume fraction decreases, the core volume fraction extracted from the SLM is always accurate but becomes increasing inaccurate for the other models. This discrepancy agrees with the results of effective medium theory proving that our conclusions are physically reasonable. Plots of the electrical microstructure using a stream tracer method to view current flow showed increased heterogeneity in the current density in the core and shell. A quantitative study of the electrical microstructure showed the formation of conduction pathways through the parallel shell and increased curvature of the pathways through the core as the core volume fraction decreased. The electrical microstructure no longer resembled the physical microstructure, making extraction of volume ratios increasingly unreliable. Only for core volume fractions of 0.7 or greater could the core volume fraction be extracted from capacitance ratios with errors of less than 25%. Chapter five also considers the extraction of volume fractions from core-shell grains and other idealised microstructures. Here the conductivity of the core and shell regions is fixed and the permittivity of the core is greater than the shell. The impedance responses of an encased model, SLM and a parallel layer model (PLM) are simulated. The response of the encased model is shown to be more similar to the SLM than the PLM, implying serial connectivity in the encased model. Due to the difference in permittivity in the core and shell regions, the core volume fraction could not be obtained from capacitance ratios but only from resistance ratios obtained from the impedance formalism. The core-shell volume fractions of the encased model and SLM were varied and then extracted using resistance ratios. Similar trends to chapter four were observed, in chapter five, where the volume fraction could be accurately obtained for the SLM from resistance ratios for all input volume fractions. For the encased model, the error when extracting the core volume from resistance ratios increased as the core volume fraction decreased. Again, this error was in excess of 25% when the core volume fraction was less than 0.7. Finally, a stream tracer investigation of electrical microstructure revealed heterogeneous current density in the encased model caused by the formation of capacitive pathways through the microstructure. Chapter six examines the case where the microstructure is fixed and the material properties are varied. An encased model with a core volume fraction of 0.8 was chosen as it had been shown in the previous chapters that larger core volume fractions minimised the effects of conduction and capacitive pathways through the parallel shell but was still comparable to the volume fractions of core-shell microstructures in the literature. The core conductivity and relative permittivity was fixed at 0.1 mSm-1 and 2000, respectively. The shell conductivity was varied from 0.1 mSm-1 to 0.1 μSm-1 and the relative permittivity from 2000 to 10. One hundred combinations over a range of shell properties was simulated. The resultant spectra were then fitted with three equivalent circuits where the fits were compared to find the best equivalent circuit using all four impedance formalisms. The first circuit was based upon a SLM with the same material properties and volume fractions inputted into the encased model. The second was called the series brick layer model (SBLM) and based on the encased model but neglecting the contribution of the parallel shell region. The third circuit was called the parallel brick layer model (PBLM) which included a separate resistor capacitor branch for the parallel shell region. The SLM provided a poor fit for all encased simulations with errors between ±34 to ±163%. The SBLM and PBLM provided better fits to the encased simualtions with errors from ±0.7 to ±20% and from ±0.55 to ±20%, respectively. Analysis showed that the SBLM provided the best fit when both the conductivty and the permittivity values of the core and shell were more than an order of magnitude different. The PBLM was best when either the shell conductivty or permititvty was within an order of magnitude of the core values. Finally, the best equivalent circuit for a given set of shell material properties was used to extract values of conductivity and permittivity (for both the core and shell) in all four impedance formalisms. The accuracy of the extracted values was calculated with respect to the input values for the simulation. This allowed the most reliable form of data analysis (i.e. formalism) for extracting conductivity and permittivity values for a given combination of material properties to be established. The accuracy of the most reliable formalism was mapped out for every material property combination. This optimal methodology was used to show the best case accuracy that could be achieved for extracting intrisic material properties from a core shell microstructure as the shell properties were systematically varied.
- Published
- 2017
11. Simulating the role of molecular binding to mineral surfaces : from biomineral growth to cell attachment
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Sparks, David J., Harding, J. H., and Freeman, C. L.
- Subjects
620 - Abstract
The interactions between organic molecules and minerals is fundamental to the under- standing of processes such as biomineralisation, the attachment of bacteria to surfaces and the design of synthetic materials within biomimetics. This thesis shows how molec- ular dynamics simulations can be employed to study the organic - inorganic interactions and give new insights into the molecular binding at mineral surfaces that play a role in these processes. The incorporation of amino acids within calcium carbonate crystals was simulated and show a high energy associated with the incorporation of these molecules. The amino acids get incorporated in-between the lattice planes of the crystal, causing small anisotropic distortions to the crystal. The inclusion of these molecules occurs via a goodness-of-fit principle, where disruptions to the crystal lattice should be kept to a minimum. These simulations show good agreement with experimental X-ray data. Simulations of multiple tripeptides show a different conformational behaviour of the peptides in solution than on the surface of calcium carbonate. Whereas the pep- tides exhibit a flexible behaviour in solution, binding to the mineral surface induces a disorder-to-order transition and the peptides become rigid. These changes in con- formational behaviour offer insight into the structure and behaviour of intrinsically disordered proteins. The polymer poly acrylic acid was simulated to analyse its conformational behaviour. In the presence of counter ions the polymer exhibits a flexible, extended conformation, whereas a coiled conformation is found in the absence of counter ions. The simulations in this work agree well with experimental spectroscopy studies. The binding of the polymer to a mineral surface is not only governed by the number of functional groups, but also the flexibility of the polymer. These results give an insight in how such molecules can aid the attachment of bacteria to surfaces.
- Published
- 2015
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