151 results on '"D. Crabtree"'
Search Results
2. Self-reported menses physiology is positively modulated by a well-formulated, energy-controlled ketogenic diet vs. low fat diet in women of reproductive age with overweight/obesity.
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Madison L Kackley, Alex Buga, Milene L Brownlow, Annalouise O'Connor, Teryn N Sapper, Christopher D Crabtree, Bradley T Robinson, Justen T Stoner, Drew D Decker, Loriana Soma, and Jeff S Volek
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Medicine ,Science - Abstract
Weight loss can positively alter female physiology; however, whether dietary carbohydrate- or fat- restriction confer unique effects is less studied. Precisely designed, hypocaloric well-formulated ketogenic diets (KD; ~75% energy for weight maintenance) were compared to isocaloric/isonitrogenous low-fat diet (LFD) on self-reported menses in pre-menopausal overweight and obese women (mean ± SD: 34 ± 10 years, BMI: 32.3 ± 2.7 kg/m2). Women received a precisely-weighed and formulated KD with either twice-daily with ketone salts (KS; n = 6) or a flavor-matched placebo (PL; n = 7) daily for six-weeks. An age and BMI-matched cohort (n = 6) was later assigned to the LFD and underwent the same testing procedures as the KD. Self-reported menses fluctuations were assessed bi-weekly along with measures of body weight, body composition, and fasting serum clinical chemistries using repeated measures ANOVA with Bonferroni post-hoc corrections. Both diets elicited clinically-significant weight-loss (Δ: -7.0 ± 0.5 kg; p < 0.001), primarily from fat-mass (Δ: -4.6 ± 0.3 kg; p < 0.001), and improved insulin-sensitivity and serum lipids (all p < 0.05). Fasting plasma glucose and inflammatory markers were not different between diets. Fasting capillary beta-hydroxybutyrate (R-βHB) increased significantly during the KD, independent of supplementation (Δ: 1.2 ± 0.3 mM R-βHB; p < 0.001). Women randomized to the KD+KS (30%) and KD+PL (43%) reported subjective increases in menses frequency and intensity after 14 days, whereas another third reported a regain of menses (>1 year since the last period) after 28 days. No LFD participants reported menses changes. Nutrient-dense, whole-food KDs and LFD improved weight, BMI, body composition, and blood parameters in pre-menopausal women after six-weeks. Changes in self-reported menses were described by most of the KD participants, but none of the LFD women suggesting there may be unique effects of nutritional ketosis, independent of weight loss.
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- 2024
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3. Feasibility and metabolic outcomes of a well-formulated ketogenic diet as an adjuvant therapeutic intervention for women with stage IV metastatic breast cancer: The Keto-CARE trial.
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Alex Buga, David G Harper, Teryn N Sapper, Parker N Hyde, Brandon Fell, Ryan Dickerson, Justen T Stoner, Madison L Kackley, Christopher D Crabtree, Drew D Decker, Bradley T Robinson, Gerald Krystal, Katherine Binzel, Maryam B Lustberg, and Jeff S Volek
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Medicine ,Science - Abstract
PurposeKetogenic diets may positively influence cancer through pleiotropic mechanisms, but only a few small and short-term studies have addressed feasibility and efficacy in cancer patients. The primary goals of this study were to evaluate the feasibility and the sustained metabolic effects of a personalized well-formulated ketogenic diet (WFKD) designed to achieve consistent blood beta-hydroxybutyrate (βHB) >0.5 mM in women diagnosed with stage IV metastatic breast cancer (MBC) undergoing chemotherapy.MethodsWomen (n = 20) were enrolled in a six month, two-phase, single-arm WFKD intervention (NCT03535701). Phase I was a highly-supervised, ad libitum, personalized WFKD, where women were provided with ketogenic-appropriate food daily for three months. Phase II transitioned women to a self-administered WFKD with ongoing coaching for an additional three months. Fasting capillary βHB and glucose were collected daily; weight, body composition, plasma insulin, and insulin resistance were collected at baseline, three and six months.ResultsCapillary βHB indicated women achieved nutritional ketosis (Phase I mean: 0.8 mM (n = 15); Phase II mean: 0.7 mM (n = 9)). Body weight decreased 10% after three months, primarily from body fat. Fasting plasma glucose, plasma insulin, and insulin resistance also decreased significantly after three months (p < 0.01), an effect that persisted at six months.ConclusionsWomen diagnosed with MBC undergoing chemotherapy can safely achieve and maintain nutritional ketosis, while improving body composition and insulin resistance, out to six months.
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- 2024
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4. Metabolic and ruck performance effects of a novel, light‐weight, energy‐dense ketogenic bar
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Alex Buga, Chris D. Crabtree, Justen T. Stoner, Drew D. Decker, Bradley T. Robinson, Madison L. Kackley, Teryn N. Sapper, Jeffrey D. Buxton, Dominic P. D'Agostino, Tyler S. McClure, Anthony Berardi, Shawn Cline, Trevor Fleck, Jared Krout, Doran Newby, Andrew P. Koutnik, Jeff S. Volek, and Philip J. Prins
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carbohydrate ,exercise ,ketogenic ,ruck ,supplementation ,time‐to‐exhaustion ,Physiology ,QP1-981 - Abstract
Abstract Rucksack marches (‘rucks’) are strenuous, military‐relevant exercises that may benefit from pre‐event fuelling. The purpose of this investigation was to explore whether acute ingestion of carbohydrate‐ or lipid‐based nutritional bars before rucking can elicit unique advantages that augment exercise performance. Recreationally active and healthy males (n = 29) were randomized and counterbalanced to consume 1000 kcal derived from a novel, energy‐dense (percentage energy from carbohydrate/fat/protein: 5/83/12) ketogenic bar (KB), or isocaloric high‐carbohydrate bars (CB; 61/23/16) 3 h before a time‐to‐exhaustion (TTE) ruck. Conditions were separated by a 1‐week washout. The rucksack weight was standardized to 30% of bodyweight. Steady‐state treadmill pace was set at 3.2 km/h (0.89 m/s) and 14% grade. TTE was the primary outcome; respiratory exchange ratio (RER), capillary ketones (R‐β‐hydroxybutyrate), glucose and lactate, plus subjective thirst/hunger were the secondary outcomes. Mean TTE was similar between conditions (KB: 55 ± 25 vs. CB: 54 ± 22 min; P = 0.687). The RER and substrate oxidation rates revealed greater fat and carbohydrate oxidation after the KB and CB, respectively (all P
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- 2023
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5. Ion binding with charge inversion combined with screening modulates DEAD box helicase phase transitions
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Michael D. Crabtree, Jack Holland, Arvind S. Pillai, Purnima S. Kompella, Leon Babl, Noah N. Turner, James T. Eaton, Georg K.A. Hochberg, Dirk G.A.L. Aarts, Christina Redfield, Andrew J. Baldwin, and Timothy J. Nott
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CP: Molecular biology ,Biology (General) ,QH301-705.5 - Abstract
Summary: Membraneless organelles, or biomolecular condensates, enable cells to compartmentalize material and processes into unique biochemical environments. While specific, attractive molecular interactions are known to stabilize biomolecular condensates, repulsive interactions, and the balance between these opposing forces, are largely unexplored. Here, we demonstrate that repulsive and attractive electrostatic interactions regulate condensate stability, internal mobility, interfaces, and selective partitioning of molecules both in vitro and in cells. We find that signaling ions, such as calcium, alter repulsions between model Ddx3 and Ddx4 condensate proteins by directly binding to negatively charged amino acid sidechains and effectively inverting their charge, in a manner fundamentally dissimilar to electrostatic screening. Using a polymerization model combined with generalized stickers and spacers, we accurately quantify and predict condensate stability over a wide range of pH, salt concentrations, and amino acid sequences. Our model provides a general quantitative treatment for understanding how charge and ions reversibly control condensate stability.
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- 2023
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6. EEG pre-burst suppression: characterization and inverse association with preoperative cognitive function in older adults
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Melody Reese, Soren Christensen, Harel Anolick, Kenneth C. Roberts, Megan K. Wong, Mary Cooter Wright, Leah Acker, Jeffrey N. Browndyke, Marty G. Woldorff, Miles Berger, the MADCO-PC and INTUIT Investigators, O Akinyemi, CL Amundsen, P Avasarala, M Barber, R Beach, S Bengali, E Bennett, A Berchuck, MF Berry, DG Blazer, MP Bolognesi, R Brassard, BE Brigman, JN Browndyke, M Bullock, T Bunning, A Burke, V Cai, J Carter, J Chapman, C Chen, V Cheong, S Christensen, HJ Cohen, B Colin, C Colon-Emeric, M Cooter, M Cox, D Crabtree, B Davidson, JK DeOrio, M Devinney, TA D’Amico, ME Easley, E Ehieli, T Ellett, D Erdmann, RM Esclamado, M Ferrandino, B Funk, J Gadsden, J Gardner, G Garrigues, C Giattino, DT Gold, S Grant, R Greenup, J Guercio, DK Gupta, A Habib, RK Hallows, DH Harpole, SM Harris, MG Hartwig, L Havrilesky, T Henley, C Holland, ST Hollenbeck, J Hu, R Huang, E Iboaya, BA Inman, DW Jang, J Kaisen, A Kawasaki, A Khan, J Klapper, S Lagoo-Deenadayalan, DT Laskowitz, PS Lee, WT Lee, J Lemm, H Levinson, ME Lipkin, H Litchfield, CR Mantyh, E Marlor, KT Martucci, J Mathew, C Maxwell, DL McDonagh, J Migaly, SK Mithani, E Moretti, P Mosca, J Moul, D Murdoch, MF Newman, K Ni, T Novick, B Ohlendorf, S Olson, MW Onaitis, D Oyeyemi, TN Pappas, GL Pellom, AN Perez, AC Peterson, A Podgoreanu, TJ Polascik, P Potash, GM Preminger, R Previs, Q Quinones, EN Rampersaud, A Ray, A Renne, K Roberts, CN Robertson, SA Roman, S Runyon, E Sanders, A Sandler, F Sbahi, CD Scales, RP Scheri, K Seymour, S Smani, SK Smith, M Stang, S Stanley, K Sweeney, A Syed, A Szydlowska, L Talbot, N Terrando, JKM Thacker, J Thomas, BC Tong, Y Toulgoat-Dubois, A Tu, SN Vaslef, N Waldron, X Wang, DS Warner, K Weinhold, SS Wellman, H Whitson, T Wickenheisser, D Williams, M Woldorff, MK Wong, C Young, and S Zani
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burst suppression ,perioperative ,anesthesia ,non-cardiac surgery ,EEG ,postoperative delirium ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The most common complication in older surgical patients is postoperative delirium (POD). POD is associated with preoperative cognitive impairment and longer durations of intraoperative burst suppression (BSup) – electroencephalography (EEG) with repeated periods of suppression (very low-voltage brain activity). However, BSup has modest sensitivity for predicting POD. We hypothesized that a brain state of lowered EEG power immediately precedes BSup, which we have termed “pre-burst suppression” (preBSup). Further, we hypothesized that even patients without BSup experience these preBSup transient reductions in EEG power, and that preBSup (like BSup) would be associated with preoperative cognitive function and delirium risk. Data included 83 32-channel intraoperative EEG recordings of the first hour of surgery from 2 prospective cohort studies of patients ≥age 60 scheduled for ≥2-h non-cardiac, non-neurologic surgery under general anesthesia (maintained with a potent inhaled anesthetic or a propofol infusion). Among patients with BSup, we defined preBSup as the difference in 3–35 Hz power (dB) during the 1-s preceding BSup relative to the average 3–35 Hz power of their intraoperative EEG recording. We then recorded the percentage of time that each patient spent in preBSup, including those without BSup. Next, we characterized the association between percentage of time in preBSup and (1) percentage of time in BSup, (2) preoperative cognitive function, and (3) POD incidence. The percentage of time in preBSup and BSup were correlated (Spearman’s ρ [95% CI]: 0.52 [0.34, 0.66], p < 0.001). The percentage of time in BSup, preBSup, or their combination were each inversely associated with preoperative cognitive function (β [95% CI]: −0.10 [−0.19, −0.01], p = 0.024; −0.04 [−0.06, −0.01], p = 0.009; −0.04 [−0.06, −0.01], p = 0.003, respectively). Consistent with prior literature, BSup was significantly associated with POD (odds ratio [95% CI]: 1.34 [1.01, 1.78], p = 0.043), though this association did not hold for preBSup (odds ratio [95% CI]: 1.04 [0.95, 1.14], p = 0.421). While all patients had ≥1 preBSup instance, only 20.5% of patients had ≥1 BSup instance. These exploratory findings suggest that future studies are warranted to further study the extent to which preBSup, even in the absence of BSup, can identify patients with impaired preoperative cognition and/or POD risk.
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- 2023
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7. The effects of a 6-week controlled, hypocaloric ketogenic diet, with and without exogenous ketone salts, on cognitive performance and mood states in overweight and obese adults
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Madison L. Kackley, Milene L. Brownlow, Alex Buga, Chris D. Crabtree, Teryn N. Sapper, Annalouise O’Connor, and Jeff S. Volek
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mood ,cognition ,ketogenic diet ,BHB ,ketone salts ,keto-adaptation ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
BackgroundKetogenic diets are a commonly used weight loss method, but little is known how variations in sodium content and ketones influence cognition and mood during the early keto-adaptation period.ObjectivesTo investigate the effects of an exogenous ketone salt (KS) as part of a hypocaloric KD on mood and cognitive outcomes in overweight and obese adults. A secondary objective was to evaluate changes in biochemical markers associated with inflammatory and cognitive responses.Materials and methodsAdults who were overweight or obese participated in a 6-week controlled-feeding intervention comparing hypocaloric diets (∼75% of energy expenditure). KD groups received twice daily ketone salt (KD + KS; n = 12) or a flavor-matched placebo, free of minerals (KD + PL; n = 13). A separate group of age and BMI matched adults were later assigned to an isoenergetic low-fat diet (LFD; n = 12) as comparison to KD. Mood was assessed by shortened Profile of Mood States and Visual Analog Mood Scale surveys. Cognitive function was determined by the Automated Neuropsychological Assessment Metrics mental test battery.ResultsBoth KD groups achieved nutritional ketosis. Fasting serum glucose decreased in both KD groups, whereas glucose was unaffected in the LFD. Insulin decreased at week 2 and remained lower in all groups. At week 2, depression scores in the KD + PL group were higher compared to KD + KS. Performance in the math processing and go/no-go cognitive tests were lower for KD + PL and LFD participants, respectively, compared to KD + KS. Serum leptin levels decreased for all groups throughout the study but were higher for KD + KS group at week 6. Serum TNF-α steadily increased for LFD participants, reaching significance at week 6.ConclusionDuring a short-term hypocaloric diet, no indication of a consistent decline in mood or cognitive function were seen in participants following either KD, despite KD + PL being relatively low in sodium. WK2 scores of “anger” and “depression” were higher in the LFD and KD + PL groups, suggesting that KS may attenuate negative mood parameters during the early intervention stages.
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- 2022
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8. Teaching Tip: Teaching Introductory Programming from A to Z: Twenty-Six Tips from the Trenches.
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Xihui Zhang 0001, John D. Crabtree, Mark G. Terwilliger, and Janet T. Jenkins
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- 2020
9. Assessing Students' Object-Oriented Programming Skills with Java: The 'Department-Employee' Project.
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Xihui Zhang 0001, John D. Crabtree, Mark G. Terwilliger, and Tyler T. Redman
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- 2020
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10. Fasting and diurnal blood ketonemia and glycemia responses to a six-week, energy-controlled ketogenic diet, supplemented with racemic R/S-BHB salts
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Alex Buga, Madison L. Kackley, Christopher D. Crabtree, Teryn N. Bedell, Bradley T. Robinson, Justen T. Stoner, Drew D. Decker, Parker N. Hyde, Rich A. LaFountain, Milene L. Brownlow, Annalouise O'Connor, Deepa Krishnan, Craig A. McElroy, William J. Kraemer, and Jeff S. Volek
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Nutrition and Dietetics ,Endocrinology, Diabetes and Metabolism - Published
- 2023
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11. Tips for Teaching Introductory Programming.
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Xihui Zhang 0001, John D. Crabtree, Mark G. Terwilliger, and Janet T. Jenkins
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- 2019
12. Confidential Computing in the Post-Quantum Era
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Steven C. Puckett and John D. Crabtree
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- 2023
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13. The Pendulum of Paraesophageal Hernia Repair
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Traves D. Crabtree
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Pulmonary and Respiratory Medicine ,Surgery ,Cardiology and Cardiovascular Medicine - Published
- 2023
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14. Effects of Hypocaloric Low-Fat, Ketogenic, and Ketogenic and Ketone Supplement Diets on Aldosterone and Renin
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Paul Belany, Madison L Kackley, Songzhu Zhao, Bjorn Kluwe, Alex Buga, Christopher D Crabtree, Divya Nedungadi, David Kline, Guy Brock, Orlando P Simonetti, Jeff S Volek, and Joshua J Joseph
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Endocrinology ,Endocrinology, Diabetes and Metabolism ,Biochemistry (medical) ,Clinical Biochemistry ,Biochemistry - Abstract
Context Ketogenic diets (KDs) and low-fat diets (LFD) result in similar weight loss, but have differential cardiometabolic effects on lipids and insulin. Generally, weight loss decreases renin–angiotensin–aldosterone system (RAAS) activity. Objective Investigate the effects of KDs with varying sodium content vs LFD on RAAS in overweight and obese adults. Methods Twenty-eight participants were randomized 1:1 to a KD + ketone salt supplement (KD + KS) or a KD + placebo (KD + PL) arm with prepared hypocaloric meals. Twelve participants were enrolled in a post hoc LFD arm. Serum renin, aldosterone, and anthropometric and metabolic biomarkers were assessed at 0, 2, 4, and 6 weeks. Linear mixed models with random intercepts were used to compare between group differences controlling for sex and body mass index. Results Participants had a median age of 33 years, 51% female, weighed 91.3 kg, with body mass index 30.6 kg/m2. At 6 weeks, weight decreased by 6, 8, and 7 kg on average in the KD + KS, KD + PL, and LFD groups, respectively (P < .05). Aldosterone increased by 88% and 144% in the KD + PL and KD + KS groups, respectively, but did not change in the LFD after 6 weeks while renin decreased across groups. Systolic and diastolic blood pressure did not change in the KD + PL and KD + KS groups. Log ketones were positively associated with aldosterone (P < .001). Aldosterone was not associated with cardiovascular measures including blood pressure and ejection fraction (P > .05). Conclusion KD reduced weight and increased aldosterone without worsening cardiometabolic risk factors. Future KD studies are needed to elucidate mechanistic connections between ketones and aldosterone.
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- 2023
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15. Recognizing and Managing Complexity: Teaching Advanced Programming Concepts and Techniques Using the Zebra Puzzle.
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John D. Crabtree and Xihui Paul Zhang
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- 2015
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16. The Verb שָׁאַף in Biblical Hebrew
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Noah W. D. Crabtree
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Linguistics and Language ,History ,Literature and Literary Theory ,Religious studies ,Language and Linguistics - Abstract
Biblical Hebrew lexicons unanimously present the basic meaning of the verb שׁאף as “pant, snuff.” Absent etymological evidence, however, the lexical value of the verb hangs on the contextual interpretation of three attestations where the verb has not undergone semantic expansion: Isa 42:14; Jer 2:24; 14:6. Fresh analysis of the philological evidence garners support for an alternate interpretation of שׁאף רוח in Jer 2:24; 14:6 as “bray, cry out” and suggests that ואשׁאף in Isa 42:14 constitutes an elliptical form of the phrase with the same meaning. This new semantic understanding in turn allows for a reanalysis of derived meanings, furnishing a revised understanding of the verb שׁאף.
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- 2021
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17. La radio comunitaria. Historia y síntesis de modelos y experiencias
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Robbin D. Crabtree
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RADIO COMUNITARIA, NOMIC ,ESTADOS UNIDOS DE NORTEAMÉRICA ,EUROPA ,Communication. Mass media ,P87-96 - Abstract
En los Estados Unidos la radio comunitaria se inició en 1946, el artículo da cuenta de su trayectoria y de su definición. Se asevera que la radio es un "medio invisible". En Europa la radio local es un fenómeno que creció desde la Segunda Guerra Mundial. La mayoría de redes radiales europeas han intentado descentralizar su producción y han ofrecido una nueva forma de salir al aire. En la perspectiva de la comunicación para el desarrollo que impulsa la UNESCO caracteriza a la comunicación como de doble vía.
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- 2015
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18. 6 Feminist Pedagogy, the Ignatian Paradigm, and Service-Learning
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Robbin D. Crabtree, Joseph A. DeFeo, and Melissa M. Quan
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- 2022
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19. Life Expectancy and Rate of Decline After Lung Volume Reduction Surgery
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Sowmyanarayanan Thuppal, Bradley Vost, Stephen R. Hazelrigg, Traves D. Crabtree, Stephen Markwell, Justin D. Sawyer, Benjamin Seadler, Nisha Rizvi, Nicholas Lanzotti, and Kyle McCullough
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Male ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Future studies ,medicine.medical_treatment ,Guidelines as Topic ,Kaplan-Meier Estimate ,Lung volume reduction surgery ,03 medical and health sciences ,Life Expectancy ,0302 clinical medicine ,Treatment trial ,Humans ,Medicine ,Lung transplantation ,In patient ,Pneumonectomy ,Lung ,Aged ,Clinical Trials as Topic ,business.industry ,Patient Selection ,Middle Aged ,respiratory system ,Exercise capacity ,respiratory tract diseases ,Surgery ,Survival Rate ,Treatment Outcome ,Pulmonary Emphysema ,030228 respiratory system ,Homogeneous ,030220 oncology & carcinogenesis ,Life expectancy ,Female ,business ,Lung Transplantation - Abstract
Lung volume reduction surgery (LVRS) patient selection guidelines are based on the National Emphysema Treatment Trial. Because of increased mortality and poor improvement in functional outcomes, patients with non-upper lobe emphysema and low baseline exercise capacity are determined as poor candidates for LVRS. In well-selected patients with heterogeneous emphysema, LVRS has a durable long-term outcome at up to 5-years of follow-up. Five-year survival rates in patients range between 63% and 78%. LVRS seems a durable alternative for end-stage heterogeneous emphysema in patients not eligible for lung transplantation. Future studies will help identify eligible patients with homogeneous emphysema for LVRS.
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- 2021
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20. Bis Hexanoyl (R)-1,3-Butanediol, a Novel Ketogenic Ester, Acutely Increases Circulating r- and s-ß-Hydroxybutyrate Concentrations in Healthy Adults
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Christopher D. Crabtree, Thanh Blade, Parker N. Hyde, Alex Buga, Madison L. Kackley, Teryn N. Sapper, Oishika Panda, Stephanie Roa-Diaz, Joshua C. Anthony, John C. Newman, Jeff S. Volek, and Brianna J. Stubbs
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Ketosis has been reported to benefit healthspan and resilience, which has driven considerable interest in development of exogenous ketones to induce ketosis without dietary changes. Bis hexanoyl (R)-1,3-butanediol (BH-BD) is a novel ketone di-ester that can be used as a food ingredient that increases hepatic ketogenesis and blood beta-hydroxybutyrate (BHB) concentrations.Here, we provide the first description of blood ketone and metabolite kinetics for up to five hours after consumption of a beverage containing BH-BD by healthy adults (Consumption of BH-BD effectively raised plasma r-BHB concentrations to 0.8-1.7 mM in all conditions, and both peak r-BHB concentration and r-BHB area under the curve were greater with 25 g versus 12.5 g of BH-BD. Urinary excretion of r-BHB was1 g. Plasma concentration of the non-physiological isoform s-BHB was increased to 20-60 µM in all conditions. BH-BD consumption decreased plasma glucose and free fatty acid concentrations; insulin was increased when BH-BD was consumed with a meal.These results demonstrate that consumption of BH-BD effectively induces exogenous ketosis in healthy adults at rest.
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- 2022
21. A ketogenic diet combined with exercise alters mitochondrial function in human skeletal muscle while improving metabolic health
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William J. Kraemer, Cristopher D Crabtree, Teryn S Sapper, Richard A. LaFountain, Vincent J. Miller, Madison L. Kackley, Jay A. Short, Jeff S. Volek, Emily C. Barnhart, W. David Arnold, Parker N. Hyde, and Frederick A. Villamena
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Adult ,Male ,0301 basic medicine ,medicine.medical_specialty ,Physiology ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Mitochondrion ,03 medical and health sciences ,chemistry.chemical_compound ,Animal data ,0302 clinical medicine ,Insulin resistance ,Physiology (medical) ,Internal medicine ,medicine ,Humans ,Insulin ,Muscle, Skeletal ,Exercise ,Glycogen ,Triglyceride ,Skeletal muscle ,Lipid Metabolism ,medicine.disease ,Adaptation, Physiological ,Dietary Fats ,Mitochondria, Muscle ,030104 developmental biology ,Endocrinology ,medicine.anatomical_structure ,chemistry ,Homeostatic model assessment ,Insulin Resistance ,Diet, Ketogenic ,Energy Metabolism ,Oxidation-Reduction ,030217 neurology & neurosurgery ,Ketogenic diet - Abstract
Animal data indicate that ketogenic diets are associated with improved mitochondrial function, but human data are lacking. We aimed to characterize skeletal muscle mitochondrial changes in response to a ketogenic diet combined with exercise training in healthy individuals. Twenty-nine physically active adults completed a 12-wk supervised exercise program after self-selection into a ketogenic diet (KD, n = 15) group or maintenance of their habitual mixed diet (MD, n = 14). Measures of metabolic health and muscle biopsies (vastus lateralis) were obtained before and after the intervention. Mitochondria were isolated from muscle and studied after exposure to carbohydrate (pyruvate), fat (palmitoyl-l-carnitine), and ketone (β-hydroxybutyrate+acetoacetate) substrates. Compared with MD, the KD resulted in increased whole body resting fat oxidation ( P < 0.001) and decreased fasting insulin ( P = 0.019), insulin resistance [homeostatic model assessment of insulin resistance (HOMA-IR), P = 0.022], and visceral fat ( P < 0.001). The KD altered mitochondrial function as evidenced by increases in mitochondrial respiratory control ratio (19%, P = 0.009), ATP production (36%, P = 0.028), and ATP/H2O2(36%, P = 0.033) with the fat-based substrate. ATP production with the ketone-based substrate was four to eight times lower than with other substrates, indicating minimal oxidation. The KD resulted in a small decrease in muscle glycogen (14%, P = 0.035) and an increase in muscle triglyceride (81%, P = 0.006). These results expand our understanding of human adaptation to a ketogenic diet combined with exercise. In conjunction with weight loss, we observed altered skeletal muscle mitochondrial function and efficiency, an effect that may contribute to the therapeutic use of ketogenic diets in various clinical conditions, especially those associated with insulin resistance.
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- 2020
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22. Pulmonary Hypertension: A Contraindication for Lung Volume Reduction Surgery?
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Sowmyanarayanan Thuppal, Theresa M. Boley, Nasaraiah Nallamothu, Stephen Markwell, Blaine T. Manning, Joni Colle, Stephen R. Hazelrigg, and Traves D. Crabtree
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Male ,Pulmonary and Respiratory Medicine ,Artificial ventilation ,medicine.medical_specialty ,Vital capacity ,Hypertension, Pulmonary ,medicine.medical_treatment ,Vital Capacity ,030204 cardiovascular system & hematology ,Lung volume reduction surgery ,Contraindications, Procedure ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Intensive care ,medicine.artery ,medicine ,Humans ,Pulmonary Wedge Pressure ,Pneumonectomy ,Contraindication ,Aged ,Retrospective Studies ,Lung ,business.industry ,medicine.disease ,Pulmonary hypertension ,medicine.anatomical_structure ,Pulmonary Emphysema ,030228 respiratory system ,Pulmonary artery ,Cardiology ,Female ,Surgery ,Tomography, X-Ray Computed ,Cardiology and Cardiovascular Medicine ,business ,Follow-Up Studies - Abstract
Background Historically, pulmonary hypertension (PH) has been considered as one of the contraindications for lung volume reduction surgery (LVRS). Newer studies have shown that LVRS is successful in select emphysema patients with PH. Methods In-hospital and 1-year functional and quality of life (QOL) outcomes were studied in patients with PH post-LVRS. PH was defined as pulmonary artery pressure (PAP) exceeding 35 mm Hg by right heart catheterization (RHC), where available, or else exceeding 35 mm Hg by echocardiogram. Results Of 124 patients who underwent LVRS, 56 (45%) had PH (mean PAP, 41 mm Hg) with 48 mild to moderate and 8 severe PH. In-hospital outcomes were similar between patients with and without PH: hours of artificial ventilation (1.8 vs 0.06, P = .882), days in intensive care (4 vs 6, P = .263), prolonged air leak (12% vs 19%, P = .402), and days of hospital stay (13 vs 16, P = .072). Lung function improved significantly at the 1-year follow-up in patients with PH: forced expiratory volume in 1 second % predicted (26 vs 38, P = .001), forced vital capacity % (62 vs 90, P = .001), residual volume % predicted (224 vs 174, P = .001), diffusion capacity of the lung for carbon monoxide % predicted (36 vs 43, P = .001), 6-minute walk distance test (1104 vs 1232 feet, P = .001), and QOL utility scores (0.67 vs 0.77, P = .001). There were no differences in in-hospital, baseline, and follow-up functional and QOL outcomes between patients with and without PH. Conclusions In this small, single-institution cohort, outcomes of patients undergoing LVRS for emphysema with PH were similar to those of patients without PH. LVRS may be a potential option for select emphysema patients with PH.
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- 2020
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23. Uncovering patterns among latent variables: human rights and judicial independence
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Charles D Crabtree and Christopher J Fariss
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Political science - Abstract
In this paper, we reexamine the relationship between judicial independence and state respect for human rights by taking advantage of new latent measures of both constructs. In our analysis, we demonstrate a simple method for incorporating the uncertainty of these latent variables. Our results provide strong support for theoretical and empirical claims that independent courts constrain human rights abuses. Although we show that independent courts influence state behavior, the strength of the estimated relationship depends upon whether and to what degree empirical models account for uncertainty in the measurement of the latent variables.
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- 2015
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24. Human Rights Texts: Converting Human Rights Primary Source Documents into Data.
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Christopher J Fariss, Fridolin J Linder, Zachary M Jones, Charles D Crabtree, Megan A Biek, Ana-Sophia M Ross, Taranamol Kaur, and Michael Tsai
- Subjects
Medicine ,Science - Abstract
We introduce and make publicly available a large corpus of digitized primary source human rights documents which are published annually by monitoring agencies that include Amnesty International, Human Rights Watch, the Lawyers Committee for Human Rights, and the United States Department of State. In addition to the digitized text, we also make available and describe document-term matrices, which are datasets that systematically organize the word counts from each unique document by each unique term within the corpus of human rights documents. To contextualize the importance of this corpus, we describe the development of coding procedures in the human rights community and several existing categorical indicators that have been created by human coding of the human rights documents contained in the corpus. We then discuss how the new human rights corpus and the existing human rights datasets can be used with a variety of statistical analyses and machine learning algorithms to help scholars understand how human rights practices and reporting have evolved over time. We close with a discussion of our plans for dataset maintenance, updating, and availability.
- Published
- 2015
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25. Does Misery Impact Corporate Risk-Return Relationships?
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Tiffany Jo Westfall and Aaron D. Crabtree
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General Medicine - Abstract
The prior behavioral theory of the firm research documents that a firm’s external environment impacts the risk-return relationship, suggesting that drivers outside the firm are part of the risk-return puzzle. This study examines whether firms’ misery scores impact the return relationship. Using a sample of firm-year observations from 2002 to 2011, we investigate the relationship between the external environment related to misery and firms’ risk-return relationships by regressing five factors that proxy for firms’ external environments (e.g. misery levels) on risk and return. Our results suggest that both economic and non-economic external environmental factors impact firms’ risk-return relationship. Specifically, low unemployment rates and taxes are associated with higher levels of risk-taking, whereas greater access to leisure amenities decreases risk-taking. A firm’s return is negatively impacted by risk-taking associated with low unemployment and taxes and greater access to education and healthcare. However, a firm’s return is positively impacted by risk-taking associated with better air quality and lower property crime. The results suggest that a firm’s external environment impacts its performance. Therefore, future research may consider including location fixed effects to control for the unobservable external environmental factors that impact firm performance. Second, the results are of interest to practitioners as businesses can utilize the findings to develop internal programs that neutralize the external environment’s effects on firm performance.
- Published
- 2022
- Full Text
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26. ACR Appropriateness Criteria® Rib Fractures
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Traves D. Crabtree, Expert Panel on Thoracic Imaging, Mark D Iannettoni, Carol C. Wu, Archana T Laroia, Phillip M. Boiselle, Fabien Maldonado, Edwin F. Donnelly, Travis S. Henry, Kyungran Shim, Geoffrey B. Johnson, Ella A. Kazerooni, Kathryn M Olsen, Arlene Sirajuddin, Carlos S. Restrepo, and Jeffrey P. Kanne
- Subjects
medicine.medical_specialty ,Modalities ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Radiography ,Appropriateness criteria ,Appropriate Use Criteria ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Blunt trauma ,030220 oncology & carcinogenesis ,medicine ,Radiology, Nuclear Medicine and imaging ,Radiology ,Cardiopulmonary resuscitation ,business ,Chest radiograph ,Medical literature - Abstract
Rib fractures are the most common thoracic injury after minor blunt trauma. Although rib fractures can produce significant morbidity, the diagnosis of injuries to underlying organs is arguably more important as these complications are likely to have the most significant clinical impact. Isolated rib fractures have a relatively low morbidity and mortality and treatment is generally conservative. As such, evaluation with standard chest radiographs is usually sufficient for the diagnosis of rib fractures, and further imaging is generally not appropriate as there is little data that undiagnosed isolated rib fractures after minor blunt trauma affect management or outcomes. Cardiopulmonary resuscitation frequently results in anterior rib fractures and chest radiographs are usually appropriate (and sufficient) as the initial imaging modality in these patients. In patients with suspected pathologic fractures, chest CT or Tc-99m bone scans are usually appropriate and complementary modalities to chest radiography based on the clinical scenario. The American College of Radiology Appropriateness Criteria are evidence-based guidelines for specific clinical conditions that are reviewed annually by a multidisciplinary expert panel. The guideline development and revision include an extensive analysis of current medical literature from peer reviewed journals and the application of well-established methodologies (RAND/UCLA Appropriateness Method and Grading of Recommendations Assessment, Development, and Evaluation or GRADE) to rate the appropriateness of imaging and treatment procedures for specific clinical scenarios. In those instances where evidence is lacking or equivocal, expert opinion may supplement the available evidence to recommend imaging or treatment.
- Published
- 2019
- Full Text
- View/download PDF
27. Extended Ketogenic Diet and Physical Training Intervention in Military Personnel
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Teryn N. Sapper, Jeff S. Volek, Alex Buga, Mathew K Beeler, Vincent J. Miller, Orlando P. Simonetti, Fionn T McSwiney, Parker N. Hyde, Emily C. Barnhart, Jay A. Short, Carl M. Maresh, William J. Kraemer, Richard A. LaFountain, Madison L. Bowling, and Christopher D. Crabtree
- Subjects
Adult ,Male ,medicine.medical_specialty ,medicine.medical_treatment ,Physical fitness ,Population ,Nutritional Status ,030209 endocrinology & metabolism ,03 medical and health sciences ,0302 clinical medicine ,Weight loss ,Internal medicine ,Weight Loss ,medicine ,Humans ,Prospective Studies ,education ,Ohio ,education.field_of_study ,3-Hydroxybutyric Acid ,business.industry ,Insulin ,Public Health, Environmental and Occupational Health ,030229 sport sciences ,General Medicine ,medicine.disease ,Obesity ,Military Personnel ,Adipose Tissue ,Physical Fitness ,Body Composition ,Female ,Ketosis ,medicine.symptom ,Diet, Ketogenic ,business ,Body mass index ,Physical Conditioning, Human ,Ketogenic diet - Abstract
IntroductionKetogenic diets (KDs) that elevate ketones into a range referred to as nutritional ketosis represent a possible nutrition approach to address the emerging physical readiness and obesity challenge in the military. An emerging body of evidence demonstrates broad-spectrum health benefits attributed to being in nutritional ketosis, but no studies have specifically explored the use of a KD in a military population using daily ketone monitoring to personalize the diet prescription.Materials and MethodsTo evaluate the feasibility, metabolic, and performance responses of an extended duration KD, healthy adults (n = 29) from various military branches participated in a supervised 12-wk exercise training program. Fifteen participants self-selected to an ad libitum KD guided by daily measures of capillary blood ketones and 14 continued their normal mixed diet (MD). A battery of tests were performed before and after the intervention to assess changes in body mass, body composition, visceral fat, liver fat, insulin sensitivity, resting energy metabolism, and physical performance.ResultsAll KD subjects were in nutritional ketosis during the intervention as assessed by daily capillary beta-hydroxybutyrate (βHB) (mean βHB 1.2 mM reported 97% of all days) and showed higher rates of fat oxidation indicative of keto-adaptation. Despite no instruction regarding caloric intake, the KD group lost 7.7 kg body mass (range −3.5 to −13.6 kg), 5.1% whole-body percent fat (range −0.5 to −9.6%), 43.7% visceral fat (range 3.0 to −66.3%) (all p < 0.001), and had a 48% improvement in insulin sensitivity; there were no changes in the MD group. Adaptations in aerobic capacity, maximal strength, power, and military-specific obstacle course were similar between groups (p > 0.05).ConclusionsUS military personnel demonstrated high adherence to a KD and showed remarkable weight loss and improvements in body composition, including loss of visceral fat, without compromising physical performance adaptations to exercise training. Implementation of a KD represents a credible strategy to enhance overall health and readiness of military service members who could benefit from weight loss and improved body composition.
- Published
- 2019
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28. Influence of Nutritional Ketosis Achieved through Various Methods on Plasma Concentrations of Brain Derived Neurotropic Factor
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Madison L. Kackley, Alex Buga, Chris D. Crabtree, Teryn N. Sapper, Craig A. McElroy, Brian C. Focht, William J. Kraemer, and Jeff S. Volek
- Subjects
General Neuroscience ,BDNF ,ketogenic diet ,BHB ,BHB salts ,exercise ,weight loss - Abstract
Brain-Derived Neurotropic Factor (BDNF) expression is decreased in conditions associated with cognitive decline as well as metabolic diseases. One potential strategy to improve metabolic health and elevate BDNF is by increasing circulating ketones. Beta-Hydroxybutyrate (BHB) stimulates BDNF expression, but the association of circulating BHB and plasma BDNF in humans has not been widely studied. Here, we present results from three studies that evaluated how various methods of inducing ketosis influenced plasma BDNF in humans. Study 1 determined BDNF responses to a single bout of high-intensity cycling after ingestion of a dose of ketone salts in a group of healthy adults who were habitually consuming either a mixed diet or a ketogenic diet. Study 2 compared how a ketogenic diet versus a mixed diet impacts BDNF levels during a 12-week resistance training program in healthy adults. Study 3 examined the effects of a controlled hypocaloric ketogenic diet, with and without daily use of a ketone-salt, on BDNF levels in overweight/obese adults. We found that (1) fasting plasma BDNF concentrations were lower in keto-adapted versus non keto-adapted individuals, (2) intense cycling exercise was a strong stimulus to rapidly increase plasma BDNF independent of ketosis, and (3) clinically significant weight loss was a strong stimulus to decrease fasting plasma BDNF independent of diet composition or level of ketosis. These results highlight the plasticity of plasma BDNF in response to lifestyle factors but does not support a strong association with temporally matched BHB concentrations.
- Published
- 2022
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29. Effects of Palm Stearin versus Butter in the Context of Low-Carbohydrate/High-Fat and High-Carbohydrate/Low-Fat Diets on Circulating Lipids in a Controlled Feeding Study in Healthy Humans
- Author
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Richard A. LaFountain, Parker N. Hyde, William J. Kraemer, Teryn N. Sapper, Ronald M. Krauss, Sarah M. King, Christopher D. Crabtree, Vincent J. Miller, Stephen D. Phinney, Jeff S. Volek, Alex Buga, Madison L. Kackley, and Brandon Fell
- Subjects
Male ,0301 basic medicine ,and promotion of well-being ,saturated fat ,Saturated fat ,Plasma lipoprotein particle ,cholesterol ,butter ,palm oil ,low-carbohydrate diet ,030204 cardiovascular system & hematology ,Cardiovascular ,Diet, Carbohydrate-Restricted ,chemistry.chemical_compound ,0302 clinical medicine ,Fat-Restricted ,TX341-641 ,Food science ,Canola ,Diet, Fat-Restricted ,Cross-Over Studies ,Nutrition and Dietetics ,Middle Aged ,Lipids ,Healthy Volunteers ,Palm stearin ,Female ,lipids (amino acids, peptides, and proteins) ,Diet, Carbohydrate Loading ,Adult ,food.ingredient ,Context (language use) ,Diet, High-Fat ,Article ,Young Adult ,03 medical and health sciences ,Food Sciences ,food ,Clinical Research ,Carbohydrate Loading ,Dietary Carbohydrates ,Humans ,3.3 Nutrition and chemoprevention ,Metabolic and endocrine ,Nutrition ,Aged ,Carbohydrate-Restricted ,030109 nutrition & dietetics ,Cholesterol ,Nutrition. Foods and food supply ,Prevention ,Carbohydrate ,Atherosclerosis ,Prevention of disease and conditions ,Dietary Fats ,Diet ,High-Fat ,chemistry ,Food Science ,Lipoprotein - Abstract
Background. Foods rich in saturated fatty acids (SFAs) have been discouraged by virtue of their cholesterol-raising potential, but this effect is modulated by the food source and background level of carbohydrate. Objective. We aimed to compare the consumption of palm stearin (PS) versus butter on circulating cholesterol responses in the setting of both a low-carbohydrate/high-fat (LC/HF) and high-carbohydrate/low-fat (HC/LF) diet in healthy subjects. We also explored effects on plasma lipoprotein particle distribution and fatty acid composition. Methods. We performed a randomized, controlled-feeding, cross-over study that compared a PS- versus a Butter-based diet in a group of normocholesterolemic, non-obese adults. A controlled canola oil-based ‘Run-In’ diet preceded the experimental PS and Butter diets. All diets were eucaloric, provided for 3-weeks, and had the same macronutrient distribution but varied in primary fat source (40% of the total fat). The same Run-In and cross-over experiments were done in two separate groups who self-selected to either a LC/HF (n = 12) or a HC/LF (n = 12) diet track. The primary outcomes were low-density lipoprotein-cholesterol (LDL-C), high-density lipoprotein (HDL)-C, triglycerides, and LDL particle distribution. Results. Compared to PS, Butter resulted in higher LDL-C in both the LC/HF (13.4%, p = 0.003) and HC/LF (10.8%, p = 0.002) groups, which was primarily attributed to large LDL I and LDL IIa particles. There were no differences between PS and Butter in HDL-C, triglycerides, or small LDL particles. Oxidized LDL was lower after PS than Butter in LC/HF (p = 0.011), but not the HC/LF group. Conclusions. These results demonstrate that Butter raises LDL-C relative to PS in healthy normocholesterolemic adults regardless of background variations in carbohydrate and fat, an effect primarily attributed to larger cholesterol-rich LDL particles.
- Published
- 2021
30. Repulsive electrostatic interactions modulate dense and dilute phase properties of biomolecular condensates
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Leon Babl, Andrew Baldwin, Jack Holland, Michael D. Crabtree, Timothy J. Nott, Purnima Kompella, and Noah Turner
- Subjects
chemistry.chemical_classification ,Solvent ,Chemical physics ,Chemistry ,Negative charge ,Phase (matter) ,Biomolecule ,Biochemical reactions ,Charge (physics) ,Electrostatics - Abstract
Liquid-like membraneless organelles form via multiple, weak interactions between biomolecules. The resulting condensed states constitute novel solvent environments inside eukaryotic cells that partition biomolecules and may favour particular biochemical reactions. Here we demonstrate that, in addition to attractive interactions, repulsive electrostatic interactions modulate condensate properties. We find that net charge modulates the formation, morphology and solvent properties of model Ddx4 condensates in cells and in vitro and that a net negative charge is conserved across germ cell-specific Ddx4 orthologues. This conserved net charge provides a sensitivity to multivalent cations that is not observed in somatic paralogues. The disfavouring effect of a net negative charge in Ddx4 orthologues appears to be offset by increased charge patterning, indicating that fine tuning of both attractive and repulsive interactions can create responsive solvent environments inside biomolecular condensates.
- Published
- 2020
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- View/download PDF
31. The Effects of a 6-Week Controlled, Hypocaloric Ketogenic Diet, With and Without Exogenous Ketone Salts, on Body Composition Responses
- Author
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Alex Buga, Madison L. Kackley, Christopher D. Crabtree, Teryn N. Sapper, Lauren Mccabe, Brandon Fell, Rich A. LaFountain, Parker N. Hyde, Emily R. Martini, Jessica Bowman, Yue Pan, Debbie Scandling, Milene L. Brownlow, Annalouise O'Connor, Orlando P. Simonetti, William J. Kraemer, and Jeff S. Volek
- Subjects
0301 basic medicine ,medicine.medical_specialty ,obesity ,Ketone ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,lcsh:TX341-641 ,03 medical and health sciences ,Internal medicine ,medicine ,Nutrition ,Original Research ,chemistry.chemical_classification ,body composition ,030109 nutrition & dietetics ,Nutrition and Dietetics ,Muscle loss ,Chemistry ,advanced imaging ,medicine.disease ,Obesity ,030104 developmental biology ,Endocrinology ,ketogenic diet ,exogenous ketones ,Lean body mass ,Composition (visual arts) ,Ketosis ,Fat loss ,lcsh:Nutrition. Foods and food supply ,Food Science ,Ketogenic diet - Abstract
Background: Ketogenic diets (KDs) that elevate beta-hydroxybutyrate (BHB) promote weight and fat loss. Exogenous ketones, such as ketone salts (KS), also elevate BHB concentrations with the potential to protect against muscle loss during caloric restriction. Whether augmenting ketosis with KS impacts body composition responses to a well-formulated KD remains unknown.Purpose: To explore the effects of energy-matched, hypocaloric KD feeding (Methods: Overweight and obese adults were provided a precisely defined hypocaloric KD (~75% of energy expenditure) for 6 weeks. In a double-blind manner, subjects were randomly assigned to receive ~24 g/day of a racemic BHB-salt (KD + KS; n = 12) or placebo (KD + PL; n = 13). A matched comparison group (n = 12) was separately assigned to an isoenergetic/isonitrogenous low-fat diet (LFD). Body composition parameters were assessed by dual x-ray absorptiometry and magnetic resonance imaging.Results: The KD induced nutritional ketosis (>1.0 mM capillary BHB) throughout the study (p < 0.001), with higher fasting concentrations observed in KD + KS than KD + PL for the first 2 weeks (p < 0.05). There were decreases in body mass, whole body fat and lean mass, mid-thigh muscle cross-sectional area, and both visceral and subcutaneous adipose tissues (p < 0.001), but no group differences between the two KDs or with the LFD. Urine nitrogen excretion was significantly higher in KD + PL than LFD (p < 0.01) and trended higher in KD + PL compared to KD + KS (p = 0.076), whereas the nitrogen excretion during KD + KS was similar to LFD (p > 0.05).Conclusion: Energy-matched hypocaloric ketogenic diets favorably affected body composition but were not further impacted by administration of an exogenous BHB-salt that augmented ketosis. The trend for less nitrogen loss with the BHB-salt, if manifested over a longer period of time, may contribute to preserved lean mass.
- Published
- 2020
32. In Vitro Transition Temperature Measurement of Phase-Separating Proteins by Microscopy
- Author
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Jack, Holland, Michael D, Crabtree, and Timothy J, Nott
- Subjects
DEAD-box RNA Helicases ,Intrinsically Disordered Proteins ,Solutions ,Microscopy ,Nephelometry and Turbidimetry ,Osmolar Concentration ,Image Processing, Computer-Assisted ,Humans ,Transition Temperature ,Thermometry ,Phase Transition - Abstract
Intracellular compartmentalization through liquid-liquid phase separation is an emerging organizing principle of cell biology. These compartments, such as the nucleolus and stress granules, are collectively known as membraneless organelles or biomolecular condensates. In vitro studies of many protein components of biomolecular condensates, such as the intrinsically disordered regions of Ddx4, FUS, and Laf-1 proteins, have revealed much about the driving forces of the phase separation process. A common approach is to investigate how the temperature at which a protein solution forms condensates-the transition temperature-responds to changes in the solution composition. We describe a method to measure the in vitro transition temperature of a sub-10 μL sample of a phase-separating solution using transmitted light microscopy. Through monitoring changes in transition temperature with solution conditions, this approach allows the impact of additional biomolecules and additives to be quantitatively assessed and permits the construction of phase diagrams.
- Published
- 2020
33. Eight new
- Author
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M A, Castellano, C D, Crabtree, D, Mitchell, and R A, Healy
- Subjects
ectomycorrhizae ,hypogeous fungi ,sequestrate fungi ,Articles ,new taxa - Abstract
The hypogeous, sequestrate ascomycete genus Elaphomyces is one of the oldest known truffle-like genera. Elaphomyces has a long history of consumption by animals in Europe and was formally described by Nees von Esenbeck in 1820 from Europe. Until recently most Elaphomyces specimens in North America were assigned names of European taxa due to lack of specialists working on this group and difficulty of using pre-modern species descriptions. It has recently been discovered that North America has a rich diversity of Elaphomyces species far beyond the four Elaphomyces species described from North America prior to 2012. We describe eight new Elaphomyces species (E. dalemurphyi, E. dunlapii, E. holtsii, E. lougehrigii, E. miketroutii, E. roodyi, E. stevemilleri and E. wazhazhensis) of eastern North America that were collected in habitats from Quebec, Canada south to Florida, USA, west to Texas and Iowa. The ranges of these species vary and with continued sampling may prove to be larger than we have established. Castellano has studied authentic material of all European Elaphomyces species published through 2016 and it is interesting to note that many Elaphomyces species from eastern North America have morphological similarities but with distinct morphological differences to a number of European Elaphomyces species. Citation: Castellano MA, Crabtree CD, Mitchell D, Healy RA (2020). Eight new Elaphomyces species (Elaphomycetaceae, Eurotiales, Ascomycota) from eastern North America. Fungal Systematics and Evolution 7: 113–131. doi: 10.3114/fuse.2021.07.06
- Published
- 2020
34. Assessment of cardiac function, blood flow and myocardial tissue relaxation parameters at 0.35 T
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Ning Jin, Rizwan Ahmad, Orlando P. Simonetti, Kelvin Chow, Yingmin Liu, Juliet Varghese, Jason Craft, and Christopher D. Crabtree
- Subjects
Male ,Cardiac function curve ,Relaxometry ,Magnetic Resonance Imaging, Cine ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Image Interpretation, Computer-Assisted ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Spectroscopy ,End-systolic volume ,Ejection fraction ,Phantoms, Imaging ,business.industry ,Myocardium ,Relaxation (NMR) ,Heart ,Stroke volume ,Blood flow ,Molecular Medicine ,End-diastolic volume ,Female ,Nuclear medicine ,business ,030217 neurology & neurosurgery - Abstract
A low field strength (B0) system could increase cardiac MRI availability for patients otherwise contraindicated at higher field. Lower equipment costs could also broaden cardiac MR accessibility. The current study investigated the feasibility of cardiac function with steady-state free precession and flow assessment with phase contrast (PC) cine images at 0.35 T, and evaluated differences in myocardial relaxation times using quantitative T1, T2 and T2* maps by comparison with 1.5 and 3 T results in a small cohort of six healthy volunteers. Signal-to-noise ratio (SNR) differences across systems were characterized with proton density-weighted spin echo phantom data. SNR at 0.35 T was lower by factors of 5.5 and 15.0 compared with the 1.5 and 3 T systems used in this study. All cine images at 0.35 T scored 3 or greater on a five-point image quality scale. Normalized blood-myocardium contrast in cine images, left ventricular volumes (end diastolic volume, end systolic volume) and function (ejection fraction and stroke volume) measures at 0.35 T matched 1.5 and 3 T results. Phase-to-noise ratio in 0.35 T PC images (11.7 ± 1.9) was lower than 1.5 T (18.7 ± 5.2) and 3 T (44.9 ± 16.5). Peak velocity and stroke volume determined from PC images were similar across systems. Myocardial T1 increased (564 ± 13 ms at 0.35 T, 955 ± 19 ms at 1.5 T and 1200 ± 35 ms at 3 T) while T2 (59 ± 4 ms at 0.35 T, 49 ± 3 ms at 1.5 T and 40 ± 2 ms at 3 T) and T2* (42 ± 8 ms at 0.35 T, 33 ± 6 ms at 1.5 T and 24 ± 3 ms at 3 T) decreased with increasing B0. Despite SNR deficits, cardiovascular function, flow assessment and myocardial relaxation parameter mapping is feasible at 0.35 T using standard cardiovascular imaging sequences.
- Published
- 2020
- Full Text
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35. In Vitro Transition Temperature Measurement of Phase-Separating Proteins by Microscopy
- Author
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Timothy J. Nott, Michael D. Crabtree, and Jack Holland
- Subjects
chemistry.chemical_classification ,0303 health sciences ,Chemistry ,Transition temperature ,Biomolecule ,Lower critical solution temperature ,03 medical and health sciences ,0302 clinical medicine ,Ionic strength ,Upper critical solution temperature ,Phase (matter) ,Microscopy ,Biophysics ,030217 neurology & neurosurgery ,030304 developmental biology ,Phase diagram - Abstract
Intracellular compartmentalization through liquid-liquid phase separation is an emerging organizing principle of cell biology. These compartments, such as the nucleolus and stress granules, are collectively known as membraneless organelles or biomolecular condensates. In vitro studies of many protein components of biomolecular condensates, such as the intrinsically disordered regions of Ddx4, FUS, and Laf-1 proteins, have revealed much about the driving forces of the phase separation process. A common approach is to investigate how the temperature at which a protein solution forms condensates-the transition temperature-responds to changes in the solution composition. We describe a method to measure the in vitro transition temperature of a sub-10 μL sample of a phase-separating solution using transmitted light microscopy. Through monitoring changes in transition temperature with solution conditions, this approach allows the impact of additional biomolecules and additives to be quantitatively assessed and permits the construction of phase diagrams.
- Published
- 2020
- Full Text
- View/download PDF
36. What Is the Appropriate Extent of Lymph Node Dissection in Esophageal Cancer
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James W. Feimster and Traves D. Crabtree
- Subjects
medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Esophageal cancer ,Malignancy ,medicine.disease ,Standardized technique ,Dissection ,medicine.anatomical_structure ,Esophagectomy ,medicine ,Lymphadenectomy ,Radiology ,Lymph ,business ,Lymph node - Abstract
Although a rare malignancy, mortality from esophageal cancer remains high. Lymphadenectomy during esophagectomy is an essential part of the staging process for esophageal cancer and has been independently shown to affect overall survival. The optimal lymphadenectomy has been studied and will be reviewed below, including the total number of lymph nodes that need to be sampled to provide survival benefit, the lymph node ratio as a prognostic indicator, and the different anatomic dissections performed. It is recommended that a lymphadenectomy should at least include 15 lymph nodes sampled via at least a two-field approach and should have a standardized technique for submitting lymph nodes to pathology.
- Published
- 2020
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37. CARDIAC MAGNETIC RESONANCE IMAGING AND ECHOCARDIOGRAPHY IN MORBIDLY OBESE PATIENTS: AN ASSESSMENT OF IMAGE QUALITY
- Author
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Akash Goyal, Christopher D. Crabtree, Thura T. Harfi, Haikady Nagaraja, Bryan Lee, Saurabh Rajpal, Orlando P. Simonetti, and Matthew S. Tong
- Subjects
Cardiology and Cardiovascular Medicine - Published
- 2022
- Full Text
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38. ACR Appropriateness Criteria® Lung Cancer Screening
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Arlene Sirajuddin, Archana T Laroia, Edwin F. Donnelly, Ella A. Kazerooni, Expert Panel on Thoracic Imaging, Mark D Iannettoni, Carol C. Wu, Jeffrey P. Kanne, Kyungran Shim, Kathryn M Olsen, Phillip M. Boiselle, Traves D. Crabtree, Travis S. Henry, Elizabeth A. Lee, Geoffrey B. Johnson, and Fabien Maldonado
- Subjects
medicine.medical_specialty ,COPD ,business.industry ,Cancer ,medicine.disease ,Appropriate Use Criteria ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,medicine ,Radiology, Nuclear Medicine and imaging ,030212 general & internal medicine ,Risk factor ,Family history ,Intensive care medicine ,Lung cancer ,business ,Lung cancer screening ,Medical literature - Abstract
Lung cancer remains the leading cause of cancer death in both men and women. Smoking is the single greatest risk factor for the development of lung cancer. For patients between the age of 55 and 80 with 30 or more pack years smoking history who currently smoke or who have quit within the last 15 years should undergo lung cancer screening with low-dose CT. In patients who do not meet these criteria but who have additional risk factors for lung cancer, lung cancer screening with low-dose CT is controversial but may be appropriate. Imaging is not recommended for lung cancer screening of patient younger than 50 years of age or patients older than 80 years of age or patients of any age with less than 20 packs per year history of smoking and no additional risk factor (ie, radon exposure, occupational exposure, cancer history, family history of lung cancer, history of COPD, or history of pulmonary fibrosis). The American College of Radiology Appropriateness Criteria are evidence-based guidelines for specific clinical conditions that are reviewed annually by a multidisciplinary expert panel. The guideline development and revision include an extensive analysis of current medical literature from peer reviewed journals and the application of well-established methodologies (RAND/UCLA Appropriateness Method and Grading of Recommendations Assessment, Development, and Evaluation or GRADE) to rate the appropriateness of imaging and treatment procedures for specific clinical scenarios. In those instances where evidence is lacking or equivocal, expert opinion may supplement the available evidence to recommend imaging or treatment.
- Published
- 2018
- Full Text
- View/download PDF
39. ACR Appropriateness Criteria® Chronic Dyspnea-Noncardiovascular Origin
- Author
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Jonathan H. Chung, Patricia M. de Groot, Traves D. Crabtree, Brett W. Carter, Jeanne B. Ackman, Jeffrey P. Kanne, Expert Panel on Thoracic Imaging, James G. Ravenel, Robert M. Steiner, Patrick M. Colletti, Clinton Jokerst, Barbara L. McComb, Fabien Maldonado, and Mark D Iannettoni
- Subjects
medicine.medical_specialty ,business.industry ,Interstitial lung disease ,MEDLINE ,Evidence-based medicine ,Disease ,medicine.disease ,respiratory tract diseases ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Pleural disease ,0302 clinical medicine ,030228 respiratory system ,medicine ,Etiology ,Psychogenic disease ,Radiology, Nuclear Medicine and imaging ,Intensive care medicine ,business ,Medical literature - Abstract
Chronic dyspnea may result from a variety of disorders of cardiovascular, pulmonary, gastrointestinal, neuromuscular, systemic, and psychogenic etiology. This article discusses guidelines for the initial imaging of six variants for chronic dyspnea of noncardiovascular origin: (1) Chronic dyspnea of unclear etiology; (2) Chronic dyspnea with suspected chronic obstructive pulmonary disease; (3) Chronic dyspnea with suspected central airways disease; (4) Chronic dyspnea with suspected interstitial lung disease; (5) Chronic dyspnea with suspected disease of the pleura or chest wall; and (6) Chronic dyspnea with suspected diaphragm dysfunction. The American College of Radiology Appropriateness Criteria are evidence-based guidelines for specific clinical conditions that are reviewed annually by a multidisciplinary expert panel. The guideline development and revision include an extensive analysis of current medical literature from peer reviewed journals and the application of well-established methodologies (RAND/UCLA Appropriateness Method and Grading of Recommendations Assessment, Development, and Evaluation or GRADE) to rate the appropriateness of imaging and treatment procedures for specific clinical scenarios. In those instances where evidence is lacking or equivocal, expert opinion may supplement the available evidence to recommend imaging or treatment.
- Published
- 2018
- Full Text
- View/download PDF
40. ACR Appropriateness Criteria® Acute Respiratory Illness in Immunocompetent Patients
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Expert Panel on Thoracic Imaging, Traves D. Crabtree, Brett W. Carter, Patricia M. de Groot, Jeffrey P. Kanne, Fabien Maldonado, Robert M. Steiner, Mark D Iannettoni, Jonathan H. Chung, Barbara L. McComb, Clinton Jokerst, Patrick M. Colletti, and Jeanne B. Ackman
- Subjects
medicine.medical_specialty ,business.industry ,Public health ,Respiratory infection ,030208 emergency & critical care medicine ,Emergency department ,medicine.disease ,Chest pain ,Appropriate Use Criteria ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Pneumonia ,0302 clinical medicine ,medicine ,Radiology, Nuclear Medicine and imaging ,medicine.symptom ,Intensive care medicine ,business ,Medical literature - Abstract
Acute respiratory illness, defined as cough, sputum production, chest pain, and/or dyspnea (with or without fever), is a major public health issue, accounting for millions of doctor office and emergency department visits every year. While most cases are due to self-limited viral infections, a significant number of cases are due to more serious respiratory infections where delay in diagnosis can lead to morbidity and mortality. Imaging plays a key role in the initial diagnosis and management of acute respiratory illness. This study reviews the current literature concerning the appropriate role of imaging in the diagnosis and management of the immunocompetent adult patient initially presenting with acute respiratory illness. The American College of Radiology Appropriateness Criteria are evidence-based guidelines for specific clinical conditions that are reviewed annually by a multidisciplinary expert panel. The guideline development and revision include an extensive analysis of current medical literature from peer reviewed journals and the application of well-established methodologies (RAND/UCLA Appropriateness Method and Grading of Recommendations Assessment, Development, and Evaluation or GRADE) to rate the appropriateness of imaging and treatment procedures for specific clinical scenarios. In those instances where evidence is lacking or equivocal, expert opinion may supplement the available evidence to recommend imaging or treatment.
- Published
- 2018
- Full Text
- View/download PDF
41. Assessing Students’ Object-Oriented Programming Skills with Java: The 'Department-Employee' Project
- Author
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Mark Terwilliger, Xihui Zhang, Tyler T. Redman, and John D. Crabtree
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Object-oriented programming ,Java ,Computer Networks and Communications ,business.industry ,Computer science ,05 social sciences ,02 engineering and technology ,Software_PROGRAMMINGTECHNIQUES ,Structured programming ,Education ,Task (project management) ,020204 information systems ,0502 economics and business ,0202 electrical engineering, electronic engineering, information engineering ,050211 marketing ,Software engineering ,business ,computer ,Information Systems ,computer.programming_language - Abstract
Java is arguably today’s most popular and widely used object-oriented programming language. Learning Java is a daunting task for students, and teaching it is a challenging undertaking for instructo...
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- 2018
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42. Bitopic Binding Mode of an M1 Muscarinic Acetylcholine Receptor Agonist Associated with Adverse Clinical Trial Outcomes
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Arthur Christopoulos, Colin Molloy, Michael D. Crabtree, Simon M. Brooke, Christoffer Bundgaard, Adrian J. Mogg, Patrick M. Sexton, Helen E. Sanger, Karen J. Thompson, Sophie J. Bradley, Christian C. Felder, Andrew B. Tobin, Christopher J. Langmead, Lisa M. Broad, and Louis Dwomoh
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0301 basic medicine ,Pharmacology ,Agonist ,Intrinsic activity ,business.industry ,medicine.drug_class ,Allosteric regulation ,Muscarinic acetylcholine receptor M1 ,3. Good health ,03 medical and health sciences ,030104 developmental biology ,Muscarinic acetylcholine receptor ,Molecular Medicine ,Medicine ,Cognitive decline ,business ,Receptor ,Acetylcholine ,medicine.drug - Abstract
The realization of the therapeutic potential of targeting the M1 muscarinic acetylcholine receptor (mAChR) for the treatment of cognitive decline in Alzheimer’s disease has prompted the discovery of M1 mAChR ligands showing efficacy in alleviating cognitive dysfunction in both rodents and humans. Among these is GSK1034702 (7-fluoro-5-methyl-3-[1-(oxan-4-yl)piperidin-4-yl]-1H-benzimidazol-2-one), described previously as a potent M1 receptor allosteric agonist, which showed procognitive effects in rodents and improved immediate memory in a clinical nicotine withdrawal test but induced significant side effects. Here we provide evidence using ligand binding, chemical biology and functional assays to establish that rather than the allosteric mechanism claimed, GSK1034702 interacts in a bitopic manner at the M1 mAChR such that it can concomitantly span both the orthosteric and an allosteric binding site. The bitopic nature of GSK1034702, together with the intrinsic agonist activity and a lack of muscarinic receptor subtype selectivity reported here, all likely contribute to the adverse effects of this molecule in clinical trials. Although they impart beneficial effects on learning and memory, we conclude that these properties are undesirable in a clinical candidate due to the likelihood of adverse side effects. Rather, our data support the notion that “pure” positive allosteric modulators showing selectivity for the M1 mAChR with low levels of intrinsic activity would be preferable to provide clinical efficacy with low adverse responses.
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- 2018
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43. Living the Full Life: Mentorship for Full Professors and Senior Faculty
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Robbin D. Crabtree and David Alan Sapp
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Medical education ,Mentorship ,Psychology - Published
- 2018
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44. A Proactive Patient Identification Algorithm Increased Low-Dose CT Lung Cancer Screening Eligible Patients Per United States Preventative Services Task Force Criteria
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Amit Sapra, Priyanka Bhandari, Amanda Krus-Johnston, Rachel Rahman, Traves D. Crabtree, Jared R. Hendren, Rebecca L. Hoffman, Nathalie Foray, Sowmyanarayanan Thuppal, and Stephen R. Hazelrigg
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medicine.medical_specialty ,business.industry ,Task force ,Emergency medicine ,Medicine ,Low dose ct ,Surgery ,business ,Lung cancer screening ,Patient identification - Published
- 2021
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45. Identifying faculty for administrative careers in academic leadership
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David Alan Sapp and Robbin D. Crabtree
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Sociology - Published
- 2017
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46. The Society of Thoracic Surgeons General Thoracic Surgery Database: 2017 Update on Research
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Mark I. Block, James M. Donahue, Elizabeth A. David, David M. Shahian, John D. Mitchell, Paul H. Schipper, Kristin Mathis, Henning A. Gaissert, Traves D. Crabtree, Benjamin D. Kzower, Mark S. Allen, Andrzej S. Kosinski, Felix G. Fernandez, Jeffrey P. Jacobs, Robert H. Habib, William R. Burfeind, and Mark W. Onaitis
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Male ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Research program ,General thoracic surgery ,Biomedical Research ,Databases, Factual ,Advisory Committees ,MEDLINE ,030204 cardiovascular system & hematology ,Outcome assessment ,computer.software_genre ,Task (project management) ,03 medical and health sciences ,0302 clinical medicine ,Outcome Assessment, Health Care ,Health care ,medicine ,Humans ,Registries ,Societies, Medical ,Database ,Task force ,business.industry ,Thoracic Surgical Procedures ,United States ,030228 respiratory system ,Female ,Surgery ,Outcomes research ,Cardiology and Cardiovascular Medicine ,business ,computer ,Forecasting - Abstract
The outcomes research efforts based on The Society of Thoracic Surgeons (STS) General Thoracic Surgery Database include two established research programs with dedicated task forces and with data analyses conducted at the STS data analytic center: (1) The STS-sponsored research by the Access and Publications program, and (2) grant and institutionally funded research by the Longitudinal Follow-Up and Linked Registries Task Force. Also, the STS recently introduced the research program enabling investigative teams to apply for access to deidentified patient-level General Thoracic Surgery Database data sets and conduct related analyses at their own institution. Last year's General Thoracic Surgery Database-based research publications and the new Participant User File research program are reviewed.
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- 2017
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47. Support the success of a new provost
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David Alan Sapp and Robbin D. Crabtree
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- 2017
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48. The American Association for Thoracic Surgery consensus guidelines for the management of empyema
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Traves D. Crabtree, Alejandro Bribriesco, Benjamin D. Kozower, K. Robert Shen, David R. Jones, Subroto Paul, Patrick W. Eiken, Chad Denlinger, Joshua C. Eby, Fabien Maldonado, and Shaf Keshavjee
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Consensus ,Thoracentesis ,medicine.medical_treatment ,Treatment outcome ,Bronchopleural fistula ,Institute of medicine ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,Fibrinolytic Agents ,medicine ,Humans ,Empyema, Pleural ,Societies, Medical ,Evidence-Based Medicine ,Thoracic Surgery, Video-Assisted ,business.industry ,Vacuum assisted closure ,General surgery ,Thoracic Surgery ,Evidence-based medicine ,Thoracic Surgical Procedures ,medicine.disease ,Empyema ,Anti-Bacterial Agents ,Surgery ,Treatment Outcome ,Thoracotomy ,030228 respiratory system ,Cardiothoracic surgery ,Video-assisted thoracoscopic surgery ,Drainage ,Cardiology and Cardiovascular Medicine ,business - Published
- 2017
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49. Interpreting survival data from clinical trials of surgery versus stereotactic body radiation therapy in operable Stage I non-small cell lung cancer patients
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Stephen R. Broderick, Varun Puri, Bryan F. Meyers, Kathleen Keogan, Traves D. Crabtree, Pamela Samson, and Graham A. Colditz
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Male ,Pulmonary and Respiratory Medicine ,Cancer Research ,medicine.medical_specialty ,Lung Neoplasms ,Stage I Non-Small Cell Lung Cancer ,Stereotactic body radiation therapy ,030204 cardiovascular system & hematology ,Radiosurgery ,Article ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Survival data ,Randomized controlled trial ,Cyberknife ,law ,Carcinoma, Non-Small-Cell Lung ,medicine ,Humans ,Stage (cooking) ,Lung cancer ,Aged ,Neoplasm Staging ,business.industry ,Middle Aged ,medicine.disease ,Surgery ,Survival Rate ,Clinical trial ,Treatment Outcome ,Oncology ,030220 oncology & carcinogenesis ,Female ,business - Abstract
Objectives To identify the variability of short- and long-term survival outcomes among closed Phase III randomized controlled trials with small sample sizes comparing SBRT (stereotactic body radiation therapy) and surgical resection in operable clinical Stage I non-small cell lung cancer (NSCLC) patients. Patients and methods Clinical Stage I NSCLC patients who underwent surgery at our institution meeting the inclusion/exclusion criteria for STARS (Randomized Study to Compare CyberKnife to Surgical Resection in Stage I Non-small Cell Lung Cancer), ROSEL (Trial of Either Surgery or Stereotactic Radiotherapy for Early Stage (IA) Lung Cancer), or both were identified. Bootstrapping analysis provided 10,000 iterations to depict 30-day mortality and three-year overall survival (OS) in cohorts of 16 patients (to simulate the STARS surgical arm), 27 patients (to simulate the pooled surgical arms of STARS and ROSEL), and 515 (to simulate the goal accrual for the surgical arm of STARS). Results From 2000 to 2012, 749/873 (86%) of clinical Stage I NSCLC patients who underwent resection were eligible for STARS only, ROSEL only, or both studies. When patients eligible for STARS only were repeatedly sampled with a cohort size of 16, the 3-year OS rates ranged from 27 to 100%, and 30-day mortality varied from 0 to 25%. When patients eligible for ROSEL or for both STARS and ROSEL underwent bootstrapping with n = 27, the 3-year OS ranged from 46 to 100%, while 30-day mortality varied from 0 to 15%. Finally, when patients eligible for STARS were repeatedly sampled in groups of 515, 3-year OS narrowed to 70–85%, with 30-day mortality varying from 0 to 4%. Conclusion Short- and long-term survival outcomes from trials with small sample sizes are extremely variable and unreliable for extrapolation.
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- 2017
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50. NSQIP Risk Score Helps to Predict Treatment Allocation to Surgery vs Stereotactic Body Radiation Therapy (SBRT) for Clinical Stage I Non-Small Cell Lung Cancer (NSCLC)
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Ryan Bowman, Traves D. Crabtree, Daniel Ferraro, Sowmyanarayanan Thuppal, and Kanika Chawla
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medicine.medical_specialty ,Framingham Risk Score ,Stage I Non-Small Cell Lung Cancer ,Stereotactic body radiation therapy ,business.industry ,medicine ,Surgery ,Radiology ,business - Published
- 2020
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