43 results on '"Capote J"'
Search Results
2. Invited review: Current production trends, farm structures, and economics of the dairy sheep and goat sectors
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Pulina, G., Milán, M.J., Lavín, M.P., Theodoridis, A., Morin, E., Capote, J., Thomas, D.L., Francesconi, A.H.D., and Caja, G.
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- 2018
- Full Text
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3. Interrelationships among the length of milk stasis, tight junction permeability to lactose and monovalent cations, rate of milk secretion and composition in dairy goats traditionally milked once a day
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Torres, A., Castro, N., Suárez-Trujillo, A., Argüello, A., and Capote, J.
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- 2016
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4. The effect of colostrum source (goat vs. sheep) and timing of the first colostrum feeding (2 h vs. 14 h after birth) on body weight and immune status of artificially reared newborn lambs
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Hernández-Castellano, L.E., Morales-delaNuez, A., Sánchez-Macías, D., Moreno-Indias, I., Torres, A., Capote, J., Argüello, A., and Castro, N.
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- 2015
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5. Expression patterns and genetic variation of the ovine skeletal muscle transcriptome of sheep from five Spanish meat breeds
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Noce, A., Cardoso, T. F., Manunza, A., Martínez, A., Cánovas, A., Pons, A., Bermejo, L. A., Landi, V., Sànchez, A., Jordana, J., Delgado, J. V., Adán, S., Capote, J., Vidal, O., Pazzola, M., Vacca, G. M., Casellas, J., and Amills, M.
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- 2018
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6. Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions
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Nijman, I. J., Rosen, B. D., Bardou, P., Faraut, T., Cumer, T., Daly, K. G., Zheng, Z., Cai, Y., Asadollahpour, H., Kul, B. C., Zhang, W. -Y., Guangxin, E., Ayin, A., Baird, H., Bakhtin, M., Balteanu, V. A., Barfield, D., Berger, B., Blichfeldt, T., Boink, G., Bugiwati, S. R. A., Cai, Z., Carolan, S., Clark, E., Cubric-Curik, V., Dagong, M. I. A., Dorji, T., Drew, L., Guo, J., Hallsson, J., Horvat, S., Kantanen, J., Kawaguchi, F., Kazymbet, P., Khayatzadeh, N., Kim, N., Shah, M. K., Liao, Y., Martinez, A., Masangkay, J., Masaoka, M., Mazza, R., Mcewan, J., Milanesi, M., Omar, F. M., Nomura, Y., Ouchene-Khelifi, N. -A., Pereira, F., Sahana, G., Salavati, M., Sasazaki, S., Da Silva, A., Simcic, M., Solkner, J., Sutherland, A., Tigchelaar, J., Zhang, H., Ajmone-Marsan, P., Bradley, D. G., Colli, L., Drogemuller, C., Jiang, Y., Lei, C., Mannen, H., Pompanon, F., Tosser-Klopp, G., Lenstra, J. A., Kijas, J., Guldbrandtsen, B., Denoyelle, L., Sarry, J., le Talouarn, E., Alberti, A., Orvain, C., Engelen, S., Duby, D., Martin, P., Danchin, C., Duclos, D., Allain, D., Arquet, R., Mandonnet, N., Naves, M., Palhiere, I., Rupp, R., Rezaei, H. R., Foran, M., Stella, A., Del Corvo, M., Crisa, A., Marletta, D., Crepaldi, P., Ottino, M., Randi, E., Mujibi, D. F., Gondwe, T., Benjelloun, B., Taela, M. D. G., Nash, O., Moaeen-ud-Din, M., Visser, C., Goyache, F., Alvarez, I., Amills, M., Sanchez, A., Capote, J., Jordana, J., Pons, A., Balears, I., Molina, A., Mruttu, H. A., Masiga, C. W., Van Tassell, C. P., Reecy, J., Luikart, G., Sikosana, J., Anila, H., Petrit, D., Roswitha, B., Philippe, B., Aziz, F., Christos, P., El-Barody, M. A. A., Pierre, T., Phillip, E., Gordon, L., Albano, B. -P., Stephanie, Z., Michel, T., Georg, E., Horst, B., Eveline, I. -A., Luhken, G., Krugmann, D., Eva-Maria, P., Shirin, L., Katja, G., Christina, P., Jutta, R., Marco, B., Andreas, G., Al Tarrayrah, J., Georgios, K., Olga, K., Katerina, K., Christina, L., Anton, I., Lazlo, F., Gabriele, C., Elisabetta, M., Marco, P., Antonello, C., Tiziana, S., Mario, C., Francesca, F., Stefano, G., Marta, M., Bordonaro, S., Giuseppe, D. U., Fabio, P., Mariasilvia, D. A., Alessio, V., Irene, C., Lorraine, P., Mahamoud, A. -S., Van Cann, L. M., Roman, N., Popielarczyk, D., Ewa, S., Augustin, V., Susana, D., Javier, C., Oscar, C., David, G., Regis, C., Gabriela, O. -R., Glowatzki, M. -L., Okan, E., Inci, T., Evren, K., Mike, B., Trinidad, P., Gabriela, J., Godfrey, H., Stella, D., Louise, W., Martin, T., Sam, J., and Riccardo, S.
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haplogroup ,introgresija ,domestication ,goat ,introgression ,migration ,phylogeography ,Y-chromosome ,Evolution ,MITOCHONDRIAL-DNA ,FLOW ,Haplotypes/genetics ,divje koze ,DNA, Mitochondrial ,DNA, Mitochondrial/genetics ,Behavior and Systematics ,BREEDS ,Y Chromosome ,Goats/genetics ,Genetics ,Animals ,domače koze ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,udc:575:636.39 ,kozorogi ,Ecology ,630 Agriculture ,Goats ,Genetic Variation ,NETWORKS ,DIFFERENTIATION ,genetika ,Haplotypes ,ORIGINS ,GENETIC DIVERSITY ,590 Animals (Zoology) ,570 Life sciences ,biology ,Y Chromosome/genetics - Abstract
By their paternal transmission, Y-chromosomal haplotypes are sensitive markers of population history and male-mediated introgression. Previous studies identified biallelic single-nucleotide variants in the SRY, ZFY and DDX3Y genes, which in domestic goats identified four major Y-chromosomal haplotypes, Y1A, Y1B, Y2A and Y2B, with a marked geographical partitioning. Here, we extracted goat Y-chromosomal variants from whole-genome sequences of 386 domestic goats (75 breeds) and seven wild goat species, which were generated by the VarGoats goat genome project. Phylogenetic analyses indicated domestic haplogroups corresponding to Y1B, Y2A and Y2B, respectively, whereas Y1A is split into Y1AA and Y1AB. All five haplogroups were detected in 26 ancient DNA samples from southeast Europe or Asia. Haplotypes from present-day bezoars are not shared with domestic goats and are attached to deep nodes of the trees and networks. Haplogroup distributions for 186 domestic breeds indicate ancient paternal population bottlenecks and expansions during migrations into northern Europe, eastern and southern Asia, and Africa south of the Sahara. In addition, sharing of haplogroups indicates male-mediated introgressions, most notably an early gene flow from Asian goats into Madagascar and the crossbreeding that in the 19th century resulted in the popular Boer and Anglo-Nubian breeds. More recent introgressions are those from European goats into the native Korean goat population and from Boer goat into Uganda, Kenya, Tanzania, Malawi and Zimbabwe. This study illustrates the power of the Y-chromosomal variants for reconstructing the history of domestic species with a wide geographical range.
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- 2022
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7. Goat domestication and breeding: a jigsaw of historical, biological and molecular data with missing pieces
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Amills, M., Capote, J., and Tosser‐Klopp, G.
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- 2017
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8. A mitochondrial analysis reveals distinct founder effect signatures in Canarian and Balearic goats
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Ferrando, A., Manunza, A., Jordana, J., Capote, J., Pons, A., Pais, J., Delgado, T., Atoche, P., Cabrera, B., Martínez, A., Landi, V., Delgado, J. V., Argüello, A., Vidal, O., Lalueza-Fox, C., Ramírez, O., and Amills, M.
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- 2015
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9. VarGoats project : a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity
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Denoyelle, L., Talouarn, E., Bardou, P., Colli, L., Alberti, A., Danchin, C., Del Corvo, M., Engelen, S., Orvain, C., Palhiere, I., Rupp, R., Sarry, J., Salavati, M., Amills, M., Clark, E., Crepaldi, P., Faraut, T., Masiga, C. W., Pompanon, F., Rosen, B. D., Stella, A., Van Tassell, C. P., Tosser-Klopp, G., Kijas, J., Guldbrandtsen, B., Kantanen, J., Duby, D., Martin, P., Duclos, D., Allain, D., Arquet, R., Mandonnet, N., Naves, M., Carolan, S., Foran, M., Crisa, A., Marletta, D., Ottino, M., Randi, E., Benjelloun, B., Lenstra, H., Moaeen-ud-Din, M., Reecy, J., Goyache, F., Alvarez, I., Capote, J., Jordana, J., Pons, A., Martinez, A., Molina, A., Rosen, B., Drogemuller, C., Luikart, G., Mruttu, H. A., Gondwe, T., Sikosana, J., Taela, M. D. G., Nash, O., Agence Nationale de la Recherche (France), Région Occitanie / Pyrénées-Méditerranée, Ministère de l’Enseignement supérieur et de la Recherche (France), Biotechnology and Biological Sciences Research Council (UK), Bill & Melinda Gates Foundation, Department for International Development (UK), Center for Tropical Studies and Conservation (US), University of Edinburgh, Scottish Government's Rural and Environment Science and Analytical Services, Laboratoire d'Ecologie Alpine (LECA ), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA), Génétique Physiologie et Systèmes d'Elevage (GenPhySE ), Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Système d'Information des GENomes des Animaux d'Elevage (SIGENAE), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Università cattolica del Sacro Cuore [Piacenza e Cremona] (Unicatt), Génomique métabolique (UMR 8030), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Institut de l'élevage (IDELE), Università cattolica del Sacro Cuore [Milano] (Unicatt), The Roslin Institute, Biotechnology and Biological Sciences Research Council (BBSRC), Centre for Tropical Livestock Genetics and Health [Edimburgh] (CTLGH), Centre for Research in Agricultural Genomics (CRAG), Università degli Studi di Milano = University of Milan (UNIMI), Tropical Institute of Development Innovations (TRIDI), USDA Agricultural Research Service [Beltsville, Maryland], USDA-ARS : Agricultural Research Service, Consiglio Nazionale delle Ricerche [Milano] (CNR), CSIRO Agriculture and Food (CSIRO), Unité de Recherches Zootechniques (URZ), APIS-GENE, Occitanie region, Ministere de l'Enseignement superieur, de la Recherche et de l'Innovation, United States Agency for International Development (USAID), CGIAR:OPP1127286, ACTIVEGOAT & CAPRISNP projects, UK Research & Innovation (UKRI) : BBS/OS/GC/000012F, ANR-10-INBS-0009,France-Génomique,Organisation et montée en puissance d'une Infrastructure Nationale de Génomique(2010), ANR-11-INBS-0003,CRB-Anim,Réseau de Centres de Ressources Biologiques pour les animaux domestiques(2011), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE), University of Milan, and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE)
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[SDV.BIO]Life Sciences [q-bio]/Biotechnology ,[SDV]Life Sciences [q-bio] ,Short Communication ,Single-nucleotide polymorphism ,610 Medicine & health ,Biology ,QH426-470 ,Genome ,SF1-1100 ,Domestication ,Animals, Domestication, Genetic Variation, Genomics, Goats, Genome, Genome-Wide Association Study ,03 medical and health sciences ,Capra hircus ,Genetics ,Animals ,Indel ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,Genetic association ,2. Zero hunger ,0303 health sciences ,Genetic diversity ,[SDV.BA.MVSA]Life Sciences [q-bio]/Animal biology/Veterinary medicine and animal Health ,Settore AGR/17 - ZOOTECNICA GENERALE E MIGLIORAMENTO GENETICO ,630 Agriculture ,Goats ,0402 animal and dairy science ,Genetic Variation ,04 agricultural and veterinary sciences ,General Medicine ,Genomics ,15. Life on land ,040201 dairy & animal science ,Animal culture ,Evolutionary biology ,570 Life sciences ,biology ,590 Animals (Zoology) ,Animal Science and Zoology ,Reference genome ,Genome-Wide Association Study - Abstract
[Background]: Since their domestication 10,500 years ago, goat populations with distinctive genetic backgrounds have adapted to a broad variety of environments and breeding conditions. The VarGoats project is an international 1000-genome resequencing program designed to understand the consequences of domestication and breeding on the genetic diversity of domestic goats and to elucidate how speciation and hybridization have modeled the genomes of a set of species representative of the genus Capra., [Findings]: A dataset comprising 652 sequenced goats and 507 public goat sequences, including 35 animals representing eight wild species, has been collected worldwide. We identified 74,274,427 single nucleotide polymorphisms (SNPs) and 13,607,850 insertion-deletions (InDels) by aligning these sequences to the latest version of the goat reference genome (ARS1). A Neighbor-joining tree based on Reynolds genetic distances showed that goats from Africa, Asia and Europe tend to group into independent clusters. Because goat breeds from Oceania and Caribbean (Creole) all derive from imported animals, they are distributed along the tree according to their ancestral geographic origin., [Conclusions]: We report on an unprecedented international effort to characterize the genome-wide diversity of domestic goats. This large range of sequenced individuals represents a unique opportunity to ascertain how the demographic and selection processes associated with post-domestication history have shaped the diversity of this species. Data generated for the project will also be extremely useful to identify deleterious mutations and polymorphisms with causal effects on complex traits, and thus will contribute to new knowledge that could be used in genomic prediction and genome-wide association studies., We are grateful to France Génomique “Call for high impact projects” (ANR‐10‐INBS‐09‐08) for selecting our project and providing us the resources to sequence 400 goats. We would like to mention that APIS-GENE funded some WGS sequences through ACTIVEGOAT & CAPRISNP projects. We thank the Occitanie region and the Animal Genetics Division of the French National Institute for Agriculture, Food and Environment (INRAE-GA) for financing the PhD of ET. We thank the Ministère de l'Enseignement supérieur, de la Recherche et de l'Innovation for financing LD. We thank André Eggen (Illumina) for providing chips to genotype 192 animals. We thank the Animal Genetics Division of the French National Institute for Agriculture, Food and Environment (INRAE-GA) for funding VarGoats2 grant, which allowed DNA extraction and genotyping of 384 animals and CRB-Anim, Grant Agreement ANR-11-INBS-0003, (https://crb-anim.fr/) for funding French local breeds sampling. We thank the Italian Goat and Sheep Breeders Association (AssoNaPa) for supporting in sampling. Whole-genome sequencing libraries for the African goats were prepared and sequenced by Edinburgh Genomics and funded via Biotechnology and Biological Sciences Research Council research grant (BBS/OS/GC/000012F) ‘Reference genome and population sequencing of African goats’ awarded to The Roslin Institute. USDA-ARS with funding from USAID funded the collection of samples from Uganda, Tanzania, Malawi, Mozambique and Zimbabwe. EC and MS were partially supported by the Bill & Melinda Gates Foundation and with UK aid from the UK Government’s Department for International Development (Grant Agreement OPP1127286) under the auspices of the Centre for Tropical Livestock Genetics and Health (CTLGH), established jointly by the University of Edinburgh, SRUC (Scotland’s Rural College), and the International Livestock Research Institute. The findings and conclusions contained within are those of the authors and do not necessarily reflect positions or policies of the Bill & Melinda Gates Foundation nor the UK Government.
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- 2021
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10. DIFFUSE LARGE B-CELL LYMPHOMA SURVIVAL PROGNOSTICATION, A COMPARATIVE ANALYSIS OF CELL OF ORIGIN VS. MYC/BCL2 EXPRESSION
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Rodriguez, M., primary, Fernandez-Miranda, I., additional, Mondejar, R., additional, Capote, J., additional, Rodriguez-Pinilla, S., additional, Cereceda, L., additional, Alonso, R., additional, Cordoba, R., additional, Provencio, M., additional, Martin-Acosta, P., additional, Sanchez, A., additional, Pedrosa, L., additional, Gómez, S., additional, Piris-Villaespesa, M., additional, Garcia-Cosio, M., additional, Quero, C., additional, Llanos, M., additional, Barcena, C., additional, Fraga, M., additional, Camacho, F., additional, Castro, Y., additional, Garcia, J., additional, Mollejo, M., additional, Climent, F., additional, Mayordomo, E., additional, Bacalari, E., additional, Olmedilla, G., additional, Sánchez-Beato, M., additional, and Piris, M., additional
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- 2019
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11. Invited review: Current production trends, farm structures, and economics of the dairy sheep and goat sectors
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European Federation of Animal Science, Lavín González, M. Paz [0000-0003-4311-6874], Pulina, G., Milán, M. J., Lavín, Paz, Theodoridis, A., Morin, E., Capote, J., Thomas, D. L., Francesconi, A. H. D., Caja, Gerardo, European Federation of Animal Science, Lavín González, M. Paz [0000-0003-4311-6874], Pulina, G., Milán, M. J., Lavín, Paz, Theodoridis, A., Morin, E., Capote, J., Thomas, D. L., Francesconi, A. H. D., and Caja, Gerardo
- Abstract
Dairy small ruminants account for approximately 21% of all sheep and goats in the world, produce around 3.5% of the world’s milk, and are mainly lo-cated in subtropical-temperate areas of Asia, Europe, and Africa. Dairy sheep are concentrated around the Mediterranean and Black Sea regions, where their dairy products are typical ingredients of the human diet. Dairy goats are concentrated in low-income, food-deficit countries of the Indian subcontinent, where their products are a key food source, but are also present in high-income, technologically developed countries. This review evaluates the status of the dairy sheep and goat sectors in the world, with special focus on the commercially and technically developed industries in France, Greece, Italy, and Spain (FGIS). Dairy small ruminants account for a minor part of the total agricul-tural output in France, Italy, and Spain (0.9 to 1.8%) and a larger part in Greece (8.8%). In FGIS, the dairy sheep industry is based on local breeds and crossbreeds raised under semi-intensive and intensive systems and is concentrated in a few regions in these countries. Av-erage flock size varies from small to medium (140 to 333 ewes/farm), and milk yield from low to medium (85 to 216 L/ewe), showing substantial room for im-provement. Most sheep milk is sold to industries and processed into traditional cheese types, many of which are Protected Denomination of Origin (PDO) cheeses for gourmet and export markets (e.g., Pecorino, Man-chego, and Roquefort). By comparing break-even milk price among FGIS countries, we observed the follow-ing: (1) most Greek and French dairy sheep farms were unprofitable, with the exception of the intensive Chios farms of Greece; (2) milk price was aligned with cost of production in Italy; and (3) profitable farms coexisted with unprofitable farms in Spain. In FGIS, dairy goat production is based on local breeds raised under more extensive systems than sheep. Compared with sheep, average dairy goat herds are
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- 2018
12. Current market trends of sheep and goat milk, farm structures and production costs
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Pulina, G., Milàn Sendra M.J., Lavín, Paz, Theodoridis, A., Morin, E., Capote, J., Pulina, G., Milàn Sendra M.J., Lavín, Paz, Theodoridis, A., Morin, E., and Capote, J.
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- 2017
13. The effect of milk source on body weight and immune status of lambs
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Castro, N., Argüello, A., Capote, J., Morales-DelaNuez, A., Sánchez-Macías, D., Torres, A., Hernandez Castellano, Lorenzo Enrique, and Moreno-Indias, I.
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food and beverages ,570 Life sciences ,biology - Abstract
Milk source is one of the several factors that can affect lamb body weight (BW) and immune status before weaning. The aim of this experiment was to evaluate the effect of milk source (natural rearing method, named NR group, vs. artificial rearing method using a commercial milk replacer, named MR group vs. artificial rearing method using whole powdered cow milk, named CM group) on the BW and immune status of lambs during the milk feeding and weaning period. In this study, 60 lambs were equally divided according to sex and then randomly divided in three groups (NR, MR and CM). Blood plasma was collected to measure the immunoglobulin concentration (IgG and IgM), the chitotriosidase activity and complement system activity, total complement activity (TCA) and alternative complement activity (ACA). Results showed that lambs reared with NR presented, in general, higher BW, IgG, IgM, TCA and ACA than animals reared with MR or CM at 3 and 5 days after birth (P
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- 2015
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14. 0862 The goat (Capra hircus) mammary gland secretory tissue proteome as influenced by weight loss: A study using label-free proteomics
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Almeida, A. M., primary, Hernandez-Castellano, L. E., additional, Ferreira, A. M., additional, Nanni, P., additional, Grossmann, J., additional, Argüello, A., additional, Capote, J., additional, Cai, G., additional, Lippolis, J. D., additional, and Castro, N., additional
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- 2016
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15. Meat quality of lambs (hair and wool) slaughtered at different live weights
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Camacho, A., primary, Torres, A., additional, Capote, J., additional, Mata, J., additional, Viera, J., additional, Bermejo, L. A., additional, and Argüello, A., additional
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- 2016
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16. Population structure of eleven Spanish ovine breeds and detection of selective sweeps with BayeScan and hapFLK
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Manunza, A., primary, Cardoso, T. F., additional, Noce, A., additional, Martínez, A., additional, Pons, A., additional, Bermejo, L. A., additional, Landi, V., additional, Sànchez, A., additional, Jordana, J., additional, Delgado, J. V., additional, Adán, S., additional, Capote, J., additional, Vidal, O., additional, Ugarte, E., additional, Arranz, J. J., additional, Calvo, J. H., additional, Casellas, J., additional, and Amills, M., additional
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- 2016
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17. The effect of milk source on body weight and immune status of lambs
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Hernández-Castellano, L.E., primary, Moreno-Indias, I., additional, Morales-delaNuez, A., additional, Sánchez-Macías, D., additional, Torres, A., additional, Capote, J., additional, Argüello, A., additional, and Castro, N., additional
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- 2015
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18. Meat quality of lambs (hair and wool) slaughtered at different live weights.
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Camacho, A., Torres, A., Capote, J., Mata, J., Viera, J., Bermejo, L. A., and Argüello, A.
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MEAT quality ,SHEEP breeding ,FATTY acids ,FAT analysis ,COLLAGEN - Abstract
In this research the meat quality of the two canary sheep local breeds, Canaria breed (CB) and Canaria Hair breed (CHB), was evaluated, making groups of 10 males and females from each, slaughtered at live weights of 9.78 ± 0.49 kg, 15.8 ± 0.66 kg and 24.9 ± 0.76 kg. The breed affected to meat and fat colour at 24 h after slaughter. Meat of CB showed more redness and more chroma values. Fat of CB showed greater lightness. Related to the physio-chemical analysis of the meat, CB showed higher water-holding capacity, shear force and intramuscular fat content that CHB; however, CHB showed higher protein and ash percentages that CB. In relation to fat quality, CB presented higher MUFA percentage and CHB had higher PUFA percentage. CHB showed the lower atherogenic and thrombogenic indexes. Slaughter weight affected the pH, meat and fat colour and also all physio-chemical parameters, except shear force and collagen content and the fatty acid profile. Males had higher moisture content, soluble collagen and PUFA, while females had higher MUFA. The breed effect on meat quality was shown mainly in lambs slaughtered at 10 kg. Owing to their fatty acid profile, the healthiest meat was from lambs slaughtered at 25 kg. [ABSTRACT FROM PUBLISHER]
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- 2017
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19. Effect of breed (hair and wool), weight and sex on carcass quality of light lambs under intensive management
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Camacho, A., primary, Capote, J., additional, Mata, J., additional, Argüello, A., additional, Viera, J., additional, and Bermejo, L.A., additional
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- 2015
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20. Patterns of homozygosity in insular and continental goat breeds
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Cardoso, Taina F, Amills, Marcel, Bertolini, Francesca, Rothschild, Max, Marras, Gabriele, Boink, Geert, Jordana, Jordi, Capote, Juan, Carolan, Sean, Hallsson, Jón H, Kantanen, Juha, Pons, Agueda, Lenstra, Johannes A, AdaptMap, Consortium, Cardoso T.F., Amills M., Bertolini F., Rothschild M., Marras G., Boink G., Jordana J., Capote J., Carolan S., Hallsson J.H., Kantanen J., Pons A., Lenstra J.A., Auðlinda- og umhverfisdeild (LBHÍ), Faculty of Natural Resources and Environmental Sciences (AUI), Landbúnaðarháskóli Íslands, Agricultural University of Iceland, and LS IRAS Tox Algemeen
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0301 basic medicine ,[SDV]Life Sciences [q-bio] ,Iceland ,Breeding ,lcsh:SF1-1100 ,2. Zero hunger ,education.field_of_study ,biology ,630 Agriculture ,Population size ,Goats ,Homozygote ,Mediterranean Island ,04 agricultural and veterinary sciences ,General Medicine ,Genomics ,Breed ,Europe ,Morocco ,Goat ,590 Animals (Zoology) ,Genetic isolate ,Research Article ,Zimbabwe ,lcsh:QH426-470 ,Genotype ,Demographic history ,Population ,Zoology ,Polymorphism, Single Nucleotide ,Geitur ,03 medical and health sciences ,Mediterranean Islands ,Genetic variation ,Genetics ,Madagascar ,Erfðafræði ,Animals ,education ,Ecology, Evolution, Behavior and Systematics ,Population Density ,Genetic diversity ,Animal ,0402 animal and dairy science ,Genetic Variation ,biology.organism_classification ,040201 dairy & animal science ,lcsh:Genetics ,030104 developmental biology ,Genetics, Population ,Kvikfjárrækt ,Genomic ,Sarda ,Animal Science and Zoology ,lcsh:Animal culture ,Ireland - Abstract
Genetic isolation of breeds may result in a significant loss of diversity and have consequences on health and performance. In this study, we examined the effect of geographic isolation on caprine genetic diversity patterns by genotyping 480 individuals from 25 European and African breeds with the Goat SNP50 BeadChip and comparing patterns of homozygosity of insular and nearby continental breeds. Results: Among the breeds analysed, number and total length of ROH varied considerably and depending on breeds, ROH could cover a substantial fraction of the genome (up to 1.6 Gb in Icelandic goats). When compared with their continental counterparts, goats from Iceland, Madagascar, La Palma and Ireland (Bilberry and Arran) displayed a significant increase in ROH coverage, ROH number and F ROH values (P value < 0.05). Goats from Mediterranean islands represent a more complex case because certain populations displayed a significantly increased level of homozygosity (e.g. Girgentana) and others did not (e.g. Corse and Sarda). Correlations of number and total length of ROH for insular goat populations with the distance between islands and the nearest continental locations revealed an effect of extremely long distances on the patterns of homozygosity. Conclusions: These results indicate that the effects of insularization on the patterns of homozygosity are variable. Goats raised in Madagascar, Iceland, Ireland (Bilberry and Arran) and La Palma, show high levels of homozygosity, whereas those bred in Mediterranean islands display patterns of homozygosity that are similar to those found in continental populations. These results indicate that the diversity of insular goat populations is modulated by multiple factors such as geographic distribution, population size, demographic history, trading and breed management. © 2018 The Author(s)., We acknowledge financial support from the Spanish Ministry of Economy and Competitiveness (Project AGL2016‑76108‑R), the “Severo Ochoa Programme for Centres of Excellence in R&D”2016‑2019 (SEV‑2015‑0533), the CERCA Programme/Generalitat de Catalunya and the Dutch Stichting Zeldzame Huisdierrassen. Funding for FB and MR were provided by the Ensminger endowment, Hatch and State of Iowa funds. Tainã F Cardoso was funded with a fellowship from the CAPES Foundation‑Coordination of Improvement of Higher Education, Ministry of Education (MEC) of the Federal Government of Brazil.
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- 2018
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21. The demographic history and adaptation of Canarian goat breeds to environmental conditions through the use of genome-wide SNP data.
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Senczuk G, Macrì M, Di Civita M, Mastrangelo S, Del Rosario Fresno M, Capote J, Pilla F, Delgado JV, Amills M, and Martínez A
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- Animals, Genotype, Phylogeny, Goats genetics, Polymorphism, Single Nucleotide
- Abstract
Background: The presence of goats in the Canary Islands dates back to the late 1st millennium BC, which coincides with the colonization by the Amazigh settlers. However, the exact geographic origin of Canarian goats is uncertain since the Amazigh peoples were distributed over a wide spatial range. Nowadays, three Canarian breeds (Palmera, Majorera and Tinerfeña) are officially recognized, along with two distinct South and North Tinerfeña ecotypes, with the South Tinerfeña and Majorera goats thriving in arid and dry semi-desertic environments and the Palmera and North Tinerfeña goats are adapted to humid and temperate areas that are influenced by trade winds. Genotypes for 224 Canarian goats were generated using the Illumina Goat single nucleotide polymorphism (SNP)50 BeadChip. By merging these data with the genotypes from 1007 individuals of African and Southern European ancestry, our aim was to ascertain the geographic origin of the Canarian goats and identify genes associated with adaptation to diverse environmental conditions., Results: The diversity indices of the Canarian breeds align with most of those of the analyzed local breeds from Africa and Europe, except for the Palmera goats that showed lower levels of genetic variation. The Canarian breeds demonstrate a significant genetic differentiation compared to other populations, which indicates a history of prolonged geographic isolation. Moreover, the phylogenetic reconstruction indicated that the ancestry of the Canarian goats is fundamentally North African rather than West African. The ADMIXTURE and the TreeMix analyses showed no evidence of gene flow between Canarian goats and other continental breeds. The analysis of runs of homozygosity (ROH) identified 13 ROH islands while the window-based F
ST method detected 25 genomic regions under selection. Major signals of selection were found on Capra hircus (CHI) chromosomes 6, 7, and 10 using various comparisons and methods., Conclusions: This genome-wide analysis sheds new light on the evolutionary history of the four breeds that inhabit the Canary Islands. Our findings suggest a North African origin of the Canarian goats. In addition, within the genomic regions highlighted by the ROH and FST approaches, several genes related to body size and heat tolerance were identified., (© 2024. The Author(s).)- Published
- 2024
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22. Goat mammary gland metabolism: An integrated Omics analysis to unravel seasonal weight loss tolerance.
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Ribeiro DM, Palma M, Salvado J, Hernández-Castellano LE, Capote J, Castro N, Argüello A, Matzapetakis M, Araújo SS, and de Almeida AM
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- Animals, Female, Seasons, Biomarkers analysis, Weight Loss, Mammary Glands, Animal metabolism, Milk metabolism, Lactation, Goats genetics, Metabolomics
- Abstract
Seasonal weight loss (SWL), is a major limitation to animal production. In the Canary Islands, there are two dairy goat breeds with different levels of tolerance to SWL: Majorera (tolerant) and Palmera (susceptible). Our team has studied the response of these breeds to SWL using different Omics tools. The objective of this study was to integrate such results in a data driven approach and using dedicated tools, namely the DIABLO method. The outputs of our analysis mainly separate unrestricted from restricted goats. Metabolites behave as "hub" molecules, grouping interactions with several genes and proteins. Unrestricted goats upregulated protein synthesis, along with arginine catabolism and adipogenesis pathways, which are related with higher anabolic rates and a larger proportion of secretory tissue, in agreement with their higher milk production. Contrarily, restricted goats seemingly increased the synthesis of acetyl-CoA through serine and acetate conversion into pyruvate. This may have occurred to increase fatty acid synthesis and/or to use them as an energy source in detriment to glucose, which was more available in the diet of unrestricted goats. Lastly, restricted Palmera upregulated the expression of PEBP4 and GPD1 genes compared to all other groups, which might support their use as putative biomarkers for SWL susceptibility. SIGNIFICANCE: Seasonal weight loss (SWL) is a major issue influencing animal production in the tropics and Mediterranean. By studying its impact on the mammary gland of tolerant and susceptible dairy goat breeds, using Omics, we aim at surveying the tissue for possible biomarkers that reflect these traits. In this study, data integration of three Omics (transcriptomics, proteomics and metabolomics) was performed using bioinformatic tools, to relate putative biomarkers and evaluate all three levels of information; in a novel approach. This information can enhance selection programs, lowering the impact of SWL on food production systems., Competing Interests: Declaration of Competing Interest None., (Copyright © 2023 Elsevier B.V. All rights reserved.)
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- 2023
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23. Consultation-Liaison Telepsychiatry: A Coded Thematic Analysis of Clinicians' Reported Experiences.
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Potkin MT, Mishkin AD, Cheung SG, Hicks-Puig C, Magoon C, Capote J, and Muskin PR
- Abstract
Background: Telepsychiatry is now common practice. Within consultation-liaison psychiatry (CLP), previous work has shown that telepsychiatry is feasible and satisfactory. To date, there has not been qualitative work done within CLP to describe the clinician's experience with telepsychiatry., Objective: This study aimed to perform a thematic analysis of clinicians' perceived benefits and limitations of providing telepsychiatry in CLP., Methods: An anonymous clinician survey querying demographics, education, training, technological experience, and practice characteristics was distributed via social media and professional listservs, the quantitative results of which are presented elsewhere. Two questions (What was the best/worst aspect of adapting to telepsychiatry?) required free-text responses; comments were allowed elsewhere. We performed a thematic analysis of the text responses because of its flexibility and ability to develop new insights. We synthesized and generated a codebook iteratively. Initial coding was completed by 3 co-authors independently, followed by discussion to build consensus. We used qualitative content analysis to better understand common trends and frequencies in the data. Saturation of themes was reached., Results: A total of 333 behavioral health clinicians completed the survey, including 197 CLP participants. Most respondents (98.5%) responded to at least 1 open-answer question, with 314 reporting the worst aspects of telepsychiatry and 315 reporting the best aspects. Respondents made insightful comments about boundaries, public health implications, and the need for training. We categorized the results into implications for practice, therapeutic relationship, and uniquely affected populations., Conclusions: These results show that telepsychiatry has both unique benefits and limitations within CLP. Our work examines and describes these nuances. We believe that future use of telepsychiatry will be synergistic with in-person care and that the 2 modalities will be used together to maximize benefits. A public health focus on improving Internet access and simplifying interstate licensure would improve equitable access and utilization of outpatient telepsychiatry. Telepsychiatry can be successful for inpatient Consultation-Liaison work but requires thoughtful triage and teamwork., (Copyright © 2023 Academy of Consultation-Liaison Psychiatry. Published by Elsevier Inc. All rights reserved.)
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- 2023
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24. Survey of Clinician Experiences of Telepsychiatry and Tele-Consultation-Liaison Psychiatry.
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Mishkin AD, Cheung S, Capote J, Fan W, and Muskin PR
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- Female, Humans, Male, Pandemics, Psychotherapy, Surveys and Questionnaires, COVID-19, Psychiatry methods, Remote Consultation, Telemedicine
- Abstract
Background: The COVID-19 pandemic created pressure to implement telepsychiatry across practice models., Objective: We sought to evaluate the overall success of this change and to identify what types of practice settings, provider groups, and patient groups were best served by telepsychiatry and telepsychotherapy utilization. We were particularly interested in how providers of consultation-liaison psychiatry adapted to remote care., Methods: An anonymous provider survey querying demographics, education, training, technological experience, practice setting, treatment modalities, patient groups, transition process, and outcomes was made openly available via social media and professional listservs. We used multivariable regression modeling to evaluate for predictors of the positive outcomes of overall satisfaction, subjective ability to diagnose and treat patients adequately using exclusively telepsychiatric platforms, and patient satisfaction by proxy., Results: Three hundred thirty-three respondents, mostly young (59.4% younger than 50 years), female (69.7%), and physicians (67.9%), completed the survey. One hundred ninety-seven (59.1%) worked in consultation-liaison psychiatry. Of the total, 85.9% gave affirmative answers to overall satisfaction. Multivariable linear regression models found that satisfaction was predicted by general comfort with technology (P < 0.001), but negatively correlated with having technical issues (P < 0.001), a priori skepticism (P < 0.001), clinician being male (P = 0.004), and treating LGBTQ+ patients (P = 0.022). Completeness was associated with having training in telehealth (P = 0.039) and general comfort with technology (P < 0.001) but negatively associated with treating LGBTQ+ patients (P = 0.024) or inpatients (P = 0.002). Patient satisfaction by proxy was positively associated with general comfort with technology (P < 0.001) and the respondent being a nonphysician (P = 0.004) and negatively associated with encountering a technical issue (P = 0.013) or treating inpatients (P = 0.045). Consultation-liaison psychiatrists had similar results overall and were more likely to have other staff assist in making televisits effective (mean [standard deviation]: -1.25 [3.57] versus -2.76 [3.27], P < 0.001) especially if consultative (mean [standard deviation]: -0.87 [3.67] versus -2.39 [3.01], P = 0.010)., Conclusions: This study suggests high rates of overall satisfaction in telepsychiatry adoption, even in consultation-liaison psychiatry. There is distinct benefit in bolstering training, providing technical support, and addressing skepticism. Future research should include patient surveys and control groups and should focus on vulnerable populations such as sexual and gender minorities., (Copyright © 2021 Academy of Consultation-Liaison Psychiatry. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
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25. Pilot Assessment of Patient and Provider Characteristics Associated With Satisfactory Consultation-Liaison Telepsychiatry Encounters.
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Cheung SG, Capote J, Fan W, and Mishkin AD
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- Female, Humans, Pandemics, SARS-CoV-2, COVID-19, Psychiatry, Remote Consultation, Telemedicine
- Abstract
Background: The COVID-19 pandemic created pressure to attempt remote consultation, but there are limited data on the use of telepsychiatry in general, and almost none about the experience of telepsychiatry in a consultation-liaison context., Objective: We looked for attributes that correlated with satisfactory tele-encounters., Methods: Eleven consultation-liaison attending surveys and 8 attendings' tele-encounter logs from March to June 2020 were completed and reviewed to assess for patient and provider characteristics associated with barriers to using telepsychiatry., Results: A vast majority of 223 tele-psychiatric encounters were acceptable to providers in terms of technology (82%) and their ability to form a connection with the patient (78%). In multivariable logistic regression models, an unresolvable difficulty in using the platform was less common for female patients (odds ratio = 0.239, P = 0.002) and more common for patients who prefer a non-English language (odds ratio = 9.059, P < 0.001); achieving a personal connection that felt right was also less likely for patients who prefer a non-English language (odds ratio = 0.189, P = 0.001)., Conclusions: Telepsychiatry has previously been limited to outpatient use and, generally, for providers and patients who specifically preferred it. However, abrupt transition to the use of telepsychiatry to limit contagion risk was mostly satisfactory in our center; identifying for which patient encounters it is most and least appropriate will help guide future use., (Copyright © 2021 Academy of Consultation-Liaison Psychiatry. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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26. Understanding seasonal weight loss tolerance in dairy goats: a transcriptomics approach.
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Parreira JR, Hernández-Castellano LE, Argüello A, Capote J, Castro N, de Sousa Araújo S, and de Almeida AM
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- Animals, Goats physiology, Acclimatization, Goats genetics, Seasons, Transcriptome, Weight Loss
- Abstract
Background: Seasonal weight loss (SWL) is a very important limitation to the production of ruminants in the Mediterranean and Tropical regions. In these areas, long dry seasons lead to poor pastures with low nutritional value. During the dry season, ruminants, particularly those raised in extensive production systems, lose around 30% of their body weight. Seasonal weight loss has important consequences on animal productive performance and health. In this study, RNA sequencing was used to characterize feed restriction effects in dairy goat of 2 breeds with different SWL tolerance: Majorera (tolerant) and Palmera (susceptible). Nine Majorera and ten Palmera goats were randomly distributed in a control and a restricted group: Majorera Control (adequately fed; MC; n = 4), Palmera Control (adequately fed; PC; n = 6), Majorera Restricted (feed restricted; ME; n = 5) and Palmera Restricted (feed restricted; PE; n = 4). On day 22 of the trial, mammary gland biopsies were collected for transcriptomics analysis., Results: From these samples, 24,260 unique transcripts were identified. From those, 82 transcripts were differentially expressed between MC and ME, 99 between PC and PE, twelve between both control groups and twenty-nine between both restricted groups., Conclusions: Feed restriction affected several biochemical pathways in both breeds such as: carbohydrate and lipid transport; intracellular trafficking, RNA processing and signal transduction. This research also highlights the importance or involvement of the genes in tolerance (ENPP1, S-LZ, MT2A and GPNB) and susceptibility (GPD1, CTPS1, ELOVL6 and NR4A1) to SWL with respectively higher expression in the Majorera restriced group and the Palmera restricted group in comparison to the control groups. In addition, results from the study may be extrapolated to other dairy ruminant species.
- Published
- 2020
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27. Suitability of dual-purpose cockerels of 3 different genetic origins for fattening under free-range conditions.
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Torres A, Muth PC, Capote J, Rodríguez C, Fresno M, and Valle Zárate A
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- Animal Husbandry methods, Animals, Chickens genetics, Chickens growth & development, Fatty Acids administration & dosage, Fatty Acids metabolism, Genotype, Male, Chickens physiology, Meat analysis, Weight Gain genetics
- Abstract
The utilization of male chickens for fattening constitutes a potential advantage of the dual-purpose concept. In addition to the use of commercial hybrids, producers could introduce alternative chicken genotypes or further develop local breeds. To gain more information about the genetic effect on growth performance, carcass characteristics, physicochemical meat traits, and sensory attributes, 60 cockerels belonging to Les Bleues (developed from the French breed Bresse Gauloise), Canarian (Spanish local breed), and Dominant Red Barred D459 (DRB D459; commercial dual-purpose hybrid) genotypes were reared under free-range conditions in a warm tropical climate and slaughtered at 15 wk of age. The major findings were as follows: (i) Les Bleues chickens exhibited the best growth rate and the body weight of 2.44 kg reached by this strain at 15 wk would be gained only after 18 to 19 wk with DRB D459 and it would take even 2 wk longer for Canarian breed, according to the growth modeling using the Morgan equation, although the body weights between the latter were statistical similar at 15 wk; (ii) Les Bleues strain had a good capability in terms of meat production performance, presenting carcasses with significantly heavier commercial cuts, and higher fleshiness than the other 2 genotypes; (iii) although significant differences among genotypes appeared in the physical characteristics of the breast meat, especially those concerning the skin and meat color and water-holding capacity, which was significantly reduced for Canarian chickens, no significant differences were detected in the chemical composition and fatty acid profile of the breast meat; (iv) trained panelists (n = 8) pointed out that leg meat of none of the genotypes is better in terms of global appreciation, but untrained consumers (n = 99) perceived that the Les Bleues leg meat was significantly more palatable than the DRB D459 leg meat., (© 2019 Poultry Science Association Inc.)
- Published
- 2019
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28. Spp1 (osteopontin) promotes TGFβ processing in fibroblasts of dystrophin-deficient muscles through matrix metalloproteinases.
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Kramerova I, Kumagai-Cresse C, Ermolova N, Mokhonova E, Marinov M, Capote J, Becerra D, Quattrocelli M, Crosbie RH, Welch E, McNally EM, and Spencer MJ
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- Animals, Collagen Type I biosynthesis, Disease Models, Animal, Dystrophin genetics, Dystrophin metabolism, Extracellular Matrix metabolism, Female, Fibroblasts metabolism, Fibrosis metabolism, Male, Matrix Metalloproteinase 9 metabolism, Mice, Mice, Inbred mdx, Mice, Knockout, Muscle, Skeletal metabolism, Muscular Dystrophy, Duchenne genetics, Osteopontin metabolism, Primary Cell Culture, Regeneration genetics, Signal Transduction, Transforming Growth Factor beta genetics, Fibrosis genetics, Muscular Dystrophy, Duchenne metabolism, Osteopontin genetics, Transforming Growth Factor beta metabolism
- Abstract
Duchenne muscular dystrophy (DMD) is caused by mutations in the gene encoding dystrophin. Prior work has shown that DMD progression can vary, depending on the genetic makeup of the patient. Several modifier alleles have been identified including LTBP4 and SPP1. We previously showed that Spp1 exacerbates the DMD phenotype in the mdx mouse model by promoting fibrosis and by skewing macrophage polarization. Here, we studied the mechanisms involved in Spp1's promotion of fibrosis by using both isolated fibroblasts and genetically modified mice. We found that Spp1 upregulates collagen expression in mdx fibroblasts by enhancing TGFβ signaling. Spp1's effects on TGFβ signaling are through induction of MMP9 expression. MMP9 is a protease that can release active TGFβ ligand from its latent complex. In support for activation of this pathway in our model, we showed that treatment of mdx fibroblasts with MMP9 inhibitor led to accumulation of the TGFβ latent complex, decreased levels of active TGFβ and reduced collagen expression. Correspondingly, we found reduced active TGFβ in Spp1-/-mdxB10 and Mmp9-/-mdxB10 muscles in vivo. Taken together with previous observations of reduced fibrosis in both models, these data suggest that Spp1 acts upstream of TGFβ to promote fibrosis in mdx muscles. We found that in the context of constitutively upregulated TGFβ signaling (such as in the mdxD2 model), ablation of Spp1 has very little effect on fibrosis. Finally, we performed proof-of-concept studies showing that postnatal pharmacological inhibition of Spp1 reduces fibrosis and improves muscle function in mdx mice., (© The Author(s) 2019. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
- Published
- 2019
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29. Exposure to Metals from Artisanal Cheeses Made with Goat's Milk.
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Paz S, Hardisson A, Guerra N, Gutiérrez AJ, González-Weller D, Del Rosario Fresno M, Capote J, Revert C, and Rubio C
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- Adult, Animals, Dietary Exposure analysis, Goats, Humans, Milk, Spain, Cheese analysis, Food Contamination analysis, Metals isolation & purification, Trace Elements analysis
- Abstract
Cheeses are an important source of essential elements. Nevertheless, the level of some metals could pose a health risk. Therefore, the concentration of trace elements and toxic metals (Cr, Cu, Li, Ni, Sr, Pb, Cd, and Al) has been determined in artisanal cheeses from different geographical locations, and the intake of these metals from cheese consumption has been evaluated. The metal concentration was determined in a total of 90 cheese samples from different locations by using inductively coupled plasma atomic emission spectroscopy. The highest concentration of Al (35.1 ± 4.42 mg/kg, wet weight) was found in artisanal cheeses from Zamora (Spain), followed by Sr (6.85 ± 0.35 mg/kg, wet weight) in artisanal cheeses from Cadiz (Spain). A daily consumption of 23.2 g of cheese provides a significant dietary contribution for Al of 0.82% of its tolerable weekly intake of 1 mg/kg of body weight per week. Canary Islands cheeses have a higher metal content than the non-Canary cheese, which could be because of the volcanic characteristics of the island soils. The intake of toxic metals and trace elements poses no risk to the health of adults.
- Published
- 2018
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30. Patterns of homozygosity in insular and continental goat breeds.
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Cardoso TF, Amills M, Bertolini F, Rothschild M, Marras G, Boink G, Jordana J, Capote J, Carolan S, Hallsson JH, Kantanen J, Pons A, and Lenstra JA
- Subjects
- Animals, Europe, Genetic Variation, Genetics, Population, Genomics methods, Genotype, Iceland, Ireland, Madagascar, Mediterranean Islands, Morocco, Population Density, Zimbabwe, Breeding methods, Goats genetics, Homozygote, Polymorphism, Single Nucleotide
- Abstract
Background: Genetic isolation of breeds may result in a significant loss of diversity and have consequences on health and performance. In this study, we examined the effect of geographic isolation on caprine genetic diversity patterns by genotyping 480 individuals from 25 European and African breeds with the Goat SNP50 BeadChip and comparing patterns of homozygosity of insular and nearby continental breeds., Results: Among the breeds analysed, number and total length of ROH varied considerably and depending on breeds, ROH could cover a substantial fraction of the genome (up to 1.6 Gb in Icelandic goats). When compared with their continental counterparts, goats from Iceland, Madagascar, La Palma and Ireland (Bilberry and Arran) displayed a significant increase in ROH coverage, ROH number and F
ROH values (P value < 0.05). Goats from Mediterranean islands represent a more complex case because certain populations displayed a significantly increased level of homozygosity (e.g. Girgentana) and others did not (e.g. Corse and Sarda). Correlations of number and total length of ROH for insular goat populations with the distance between islands and the nearest continental locations revealed an effect of extremely long distances on the patterns of homozygosity., Conclusions: These results indicate that the effects of insularization on the patterns of homozygosity are variable. Goats raised in Madagascar, Iceland, Ireland (Bilberry and Arran) and La Palma, show high levels of homozygosity, whereas those bred in Mediterranean islands display patterns of homozygosity that are similar to those found in continental populations. These results indicate that the diversity of insular goat populations is modulated by multiple factors such as geographic distribution, population size, demographic history, trading and breed management.- Published
- 2018
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31. Differential distribution of Y-chromosome haplotypes in Swiss and Southern European goat breeds.
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Vidal O, Drögemüller C, Obexer-Ruff G, Reber I, Jordana J, Martínez A, Bâlteanu VA, Delgado JV, Eghbalsaied S, Landi V, Goyache F, Traoré A, Pazzola M, Vacca GM, Badaoui B, Pilla F, D'Andrea M, Álvarez I, Capote J, Sharaf A, Pons À, and Amills M
- Subjects
- Animals, Genetics, Population, Genotype, Goats, Microsatellite Repeats genetics, Haplotypes genetics, Y Chromosome genetics
- Abstract
The analysis of Y-chromosome variation has provided valuable clues about the paternal history of domestic animal populations. The main goal of the current work was to characterize Y-chromosome diversity in 31 goat populations from Central Eastern (Switzerland and Romania) and Southern Europe (Spain and Italy) as well as in reference populations from Africa and the Near East. Towards this end, we have genotyped seven single nucleotide polymorphisms (SNPs), mapping to the SRY, ZFY, AMELY and DDX3Y Y-linked loci, in 275 bucks from 31 populations. We have observed a low level of variability in the goat Y-chromosome, with just five haplotypes segregating in the whole set of populations. We have also found that Swiss bucks carry exclusively Y1 haplotypes (Y1A: 24%, Y1B1: 15%, Y1B2: 43% and Y1C: 18%), while in Italian and Spanish bucks Y2A is the most abundant haplotype (77%). Interestingly, in Carpathian goats from Romania the Y2A haplotype is also frequent (42%). The high Y-chromosome differentiation between Swiss and Italian/Spanish breeds might be due to the post-domestication spread of two different Near Eastern genetic stocks through the Danubian and Mediterranean corridors. Historical gene flow between Southern European and Northern African goats might have also contributed to generate such pattern of genetic differentiation.
- Published
- 2017
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32. Genetic modifiers of muscular dystrophy act on sarcolemmal resealing and recovery from injury.
- Author
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Quattrocelli M, Capote J, Ohiri JC, Warner JL, Vo AH, Earley JU, Hadhazy M, Demonbreun AR, Spencer MJ, and McNally EM
- Subjects
- Animals, Annexin A1 genetics, Annexin A1 metabolism, Annexin A6 genetics, Annexin A6 metabolism, Female, Gene Expression Regulation, Male, Mice, Mice, Inbred DBA, Mice, Knockout, Muscle, Skeletal injuries, Muscular Dystrophy, Animal metabolism, Muscular Dystrophy, Animal pathology, Osteopontin genetics, Receptors, Transforming Growth Factor beta genetics, Receptors, Transforming Growth Factor beta metabolism, Recovery of Function, Sarcolemma physiology, Genes, Modifier, Latent TGF-beta Binding Proteins physiology, Muscle, Skeletal physiology, Muscular Dystrophy, Animal genetics, Osteopontin metabolism
- Abstract
Genetic disruption of the dystrophin complex produces muscular dystrophy characterized by a fragile muscle plasma membrane leading to excessive muscle degeneration. Two genetic modifiers of Duchenne Muscular Dystrophy implicate the transforming growth factor β (TGFβ) pathway, osteopontin encoded by the SPP1 gene and latent TGFβ binding protein 4 (LTBP4). We now evaluated the functional effect of these modifiers in the context of muscle injury and repair to elucidate their mechanisms of action. We found that excess osteopontin exacerbated sarcolemmal injury, and correspondingly, that loss of osteopontin reduced injury extent both in isolated myofibers and in muscle in vivo. We found that ablation of osteopontin was associated with reduced expression of TGFβ and TGFβ-associated pathways. We identified that increased TGFβ resulted in reduced expression of Anxa1 and Anxa6, genes encoding key components of the muscle sarcolemma resealing process. Genetic manipulation of Ltbp4 in dystrophic muscle also directly modulated sarcolemmal resealing, and Ltbp4 alleles acted in concert with Anxa6, a distinct modifier of muscular dystrophy. These data provide a model in which a feed forward loop of TGFβ and osteopontin directly impacts the capacity of muscle to recover from injury, and identifies an intersection of genetic modifiers on muscular dystrophy.
- Published
- 2017
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33. Mammary gland and milk fatty acid composition of two dairy goat breeds under feed-restriction.
- Author
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Palma M, Alves SP, Hernández-Castellano LE, Capote J, Castro N, Argüello A, Matzapetakis M, Bessa RJB, and de Almeida AM
- Subjects
- Animal Feed supply & distribution, Animals, Breeding, Female, Mammary Glands, Animal physiology, Oleic Acid analysis, Palmitic Acid analysis, Spain, Species Specificity, Fatty Acids analysis, Goats physiology, Mammary Glands, Animal chemistry, Milk chemistry, Seasons, Weight Loss
- Abstract
Goat dairy products are an important source of animal protein in the tropics. During the dry season, pasture scarcity leads animals to lose up to 40% of their body weight, a condition known as Seasonal Weight Loss (SWL) that is one of the major constraints in ruminant production. Breeds with high tolerance to SWL are relevant to understand the physiological responses to pasture scarcity so they could be used in programs for animal breeding. In the Canary Islands there are two dairy goat breeds with different levels of tolerance to SWL: the Palmera, susceptible to SWL; and the Majorera, tolerant to SWL. Fat is one of the milk components most affected by environmental and physiological conditions. This study hypothesises that feed-restriction affects Majorera and Palmera breeds differently, leading to different fatty acid profiles in the mammary gland and milk. An interaction between breed and feed-restriction was observed in the mammary gland. Feed-restriction was associated with an increase in oleic acid and a decrease in palmitic acid percentage in the Palmera breed whereas no differences were observed in the Majorera breed. Palmitic and oleic acids together constituted around 60% of the total fatty acids identified, which suggests that Palmera breed is more susceptible to SWL. In milk, feed-restriction affected both breeds similarly. Regarding the interaction of the breed with the treatment, we also observed similar responses in both breeds, but this influence affects only around 2% of the total fatty acids. In general, Majorera breed is more tolerant to feed-restriction.
- Published
- 2017
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34. Nanospan, an alternatively spliced isoform of sarcospan, localizes to the sarcoplasmic reticulum in skeletal muscle and is absent in limb girdle muscular dystrophy 2F.
- Author
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Peter AK, Miller G, Capote J, DiFranco M, Solares-Pérez A, Wang EL, Heighway J, Coral-Vázquez RM, Vergara J, and Crosbie-Watson RH
- Subjects
- Animals, Carrier Proteins metabolism, Humans, Membrane Proteins metabolism, Mice, Mice, Inbred C57BL, Neoplasm Proteins metabolism, Protein Isoforms genetics, Protein Isoforms metabolism, Protein Transport, Sarcoglycanopathies genetics, Sarcoglycanopathies pathology, Sarcoglycans genetics, Sarcoplasmic Reticulum ultrastructure, Alternative Splicing, Carrier Proteins genetics, Membrane Proteins genetics, Neoplasm Proteins genetics, Sarcoglycanopathies metabolism, Sarcoplasmic Reticulum metabolism
- Abstract
Background: Sarcospan (SSPN) is a transmembrane protein that interacts with the sarcoglycans (SGs) to form a tight subcomplex within the dystrophin-glycoprotein complex that spans the sarcolemma and interacts with laminin in the extracellular matrix. Overexpression of SSPN ameliorates Duchenne muscular dystrophy in murine models., Methods: Standard cloning approaches were used to identify nanospan, and nanospan-specific polyclonal antibodies were generated and validated. Biochemical isolation of skeletal muscle membranes and two-photon laser scanning microscopy were used to analyze nanospan localization in muscle from multiple murine models. Duchenne muscular dystrophy biopsies were analyzed by immunoblot analysis of protein lysates as well as indirect immunofluorescence analysis of muscle cryosections., Results: Nanospan is an alternatively spliced isoform of sarcospan. While SSPN has four transmembrane domains and is a core component of the sarcolemmal dystrophin-glycoprotein complex, nanospan is a type II transmembrane protein that does not associate with the dystrophin-glycoprotein complex. We demonstrate that nanospan is enriched in the sarcoplasmic reticulum (SR) fractions and is not present in the T-tubules. SR fractions contain membranes from three distinct structural regions: a region flanking the T-tubules (triadic SR), a SR region across the Z-line (ZSR), and a longitudinal SR region across the M-line (LSR). Analysis of isolated murine muscles reveals that nanospan is mostly associated with the ZSR and triadic SR, and only minimally with the LSR. Furthermore, nanospan is absent from the SR of δ-SG-null (Sgcd
-/- ) skeletal muscle, a murine model for limb girdle muscular dystrophy 2F. Analysis of skeletal muscle biopsies from Duchenne muscular dystrophy patients reveals that nanospan is preferentially expressed in type I (slow) fibers in both control and Duchenne samples. Furthermore, nanospan is significantly reduced in Duchenne biopsies., Conclusions: Alternative splicing of proteins from the SG-SSPN complex produces δ-SG3, microspan, and nanospan that localize to the ZSR and the triadic SR, where they may play a role in regulating resting calcium levels as supported by previous studies (Estrada et al., Biochem Biophys Res Commun 340:865-71, 2006). Thus, alternative splicing of SSPN mRNA generates three protein isoforms (SSPN, microspan, and nanospan) that differ in the number of transmembrane domains affecting subcellular membrane association into distinct protein complexes.- Published
- 2017
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35. Adaptation of a Couple-Based HIV/STI Prevention Intervention for Latino Men Who Have Sex With Men in New York City.
- Author
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Martinez O, Wu E, Frasca T, Shultz AZ, Fernandez MI, López Rios J, Ovejero H, Moya E, Chavez Baray S, Capote J, Manusov J, Anyamele CO, López Matos J, Page JS, Carballo-Diéguez A, and Sandfort TG
- Subjects
- Adult, Humans, Interpersonal Relations, Male, New York City, Risk-Taking, Young Adult, HIV Infections prevention & control, Health Promotion methods, Hispanic or Latino psychology, Homosexuality, Male psychology, Risk Reduction Behavior, Sexual Partners psychology
- Abstract
Predominantly Spanish-speaking Latino men who have sex with men (MSM) and their same-sex partners continue to be at high risk for HIV and STIs. Behavioral research has identified how relationship dynamics for male couples are associated with sexual risk behavior. Connect 'n Unite (CNU), an evidence-based HIV/STI prevention intervention originally created for Black MSM and their same-sex partners, was adapted for predominantly Spanish-speaking Latino MSM and their same-sex partners on the assumption that its key elements would be translatable while its efficacy would be retained. A systematic adaptation process utilizing qualitative methods was used, including intervention adaptation sessions with 20 predominantly Spanish-speaking Latino gay couples and 10 health service providers. The process included five steps: (1) engaging community stakeholders, (2) capturing the lived experiences of Latino gay couples, (3) identifying intervention priorities, (4) integrating the original intervention's social cognitive theory into a relationship-oriented, ecological framework for Latino gay couples, and (5) adapting intervention activities and materials. The adapted intervention, which we called Latinos en Pareja or Latinos in a Relationship, incorporates elements that effective HIV prevention interventions share, including: a solid theoretical foundation; emphasis on increasing risk reduction norms, sexual communication skills and social support for protection; and guidance on how to utilize available, culturally and linguistically appropriate services. The systematic adaptation approach used for a couples-based HIV prevention intervention also can be employed by other researchers and community stakeholders to adapt evidence-based interventions that promote wellness, linkage to care, and disease prevention for populations not originally targeted.
- Published
- 2017
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- View/download PDF
36. Detecting the existence of gene flow between Spanish and North African goats through a coalescent approach.
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Martínez A, Manunza A, Delgado JV, Landi V, Adebambo A, Ismaila M, Capote J, El Ouni M, Elbeltagy A, Abushady AM, Galal S, Ferrando A, Gómez M, Pons A, Badaoui B, Jordana J, Vidal O, and Amills M
- Subjects
- Africa, Northern, Animals, Breeding, Spain, Gene Flow, Goats genetics
- Abstract
Human-driven migrations are one of the main processes shaping the genetic diversity and population structure of domestic species. However, their magnitude and direction have been rarely analysed in a statistical framework. We aimed to estimate the impact of migration on the population structure of Spanish and African goats. To achieve this goal, we analysed a dataset of 1,472 individuals typed with 23 microsatellites. Population structure of African and Spanish goats was moderate (mean F
ST = 0.07), with the exception of the Canarian and South African breeds that displayed a significant differentiation when compared to goats from North Africa and Nigeria. Measurement of gene flow with Migrate-n and IMa coalescent genealogy samplers supported the existence of a bidirectional gene flow between African and Spanish goats. Moreover, IMa estimates of the effective number of migrants were remarkably lower than those calculated with Migrate-n and classical approaches. Such discrepancies suggest that recent divergence, rather than extensive gene flow, is the main cause of the weak population structure observed in caprine breeds.- Published
- 2016
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37. The goat (Capra hircus) mammary gland secretory tissue proteome as influenced by weight loss: A study using label free proteomics.
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Hernández-Castellano LE, Ferreira AM, Nanni P, Grossmann J, Argüello A, Capote J, Cai G, Lippolis J, Castro N, and de Almeida AM
- Subjects
- Animals, Apoptosis, Biopsy, Female, Gene Expression Regulation immunology, Goats, Mammary Glands, Animal pathology, Proteomics methods, Species Specificity, Stress, Physiological, Mammary Glands, Animal chemistry, Proteome analysis, Weight Loss
- Abstract
Unlabelled: Seasonal weight loss (SWL) is a significant limitation to animal production. Breeds that have evolved in harsh climates have acquired tolerance to SWL through selection. Herein, label free proteomics was used to characterize the effects of SWL in two goat breeds with different levels of adaptation to nutritional stress: Majorera (tolerant) and Palmera (susceptible). Nine Majorera and 10 Palmera dairy goats were used, divided in 4 sets, 2 for each breed: underfed and a control group: Majorera Control (MC), Palmera Control (PC), Majorera Restricted (ME) and Palmera Restricted (PE). At day 22, mammary gland biopsy samples were obtained. Label free proteomic analysis enabled the identification of over 1000 proteins, of which 96 showed differential expression between two of the groups within studied comparisons. Majorera breed showed higher expression of immune system related proteins. In contrast, Palmera breed showed higher expression of proteins related to apoptosis. Results indicate that the two goat breeds have a distinct metabolism reaction to SWL, and that proteins related to the immune system and apoptosis such as cadherin-13, collagen alpha-1, nidogen-2, clusterin and protein s100-A8 could be considered putative candidates as markers of tolerance to SWL., Biological Significance: Seasonal weight loss (SWL) is one of the major constraints to animal production in the tropics. We compared the proteomics profiles of two dairy goat breeds with different levels of tolerance to SWL under control and feed restriction conditions using label free proteomics. We have identified over 1000 proteins in the goat mammary gland, of which 96 showed differential expression. Despite the fact that both breeds showed a decrease in the number of proteins related to protein, carbohydrates and fat biosynthesis, the tolerant breed showed higher expression of immune system related proteins compared to the susceptible breed. On the contrary, the susceptible breed had higher expression of apoptosis related proteins indicating that both breeds reacted differently to weight loss and that proteins related to the immune system and apoptosis such as cadherin-13, collagen alpha 1, nidogen-2 or clusterin may be suggested as markers of tolerance to SWL., (Copyright © 2016 Elsevier B.V. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
38. A genome-wide perspective about the diversity and demographic history of seven Spanish goat breeds.
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Manunza A, Noce A, Serradilla JM, Goyache F, Martínez A, Capote J, Delgado JV, Jordana J, Muñoz E, Molina A, Landi V, Pons A, Balteanu V, Traoré A, Vidilla M, Sánchez-Rodríguez M, Sànchez A, Cardoso TF, and Amills M
- Subjects
- Africa, Northern, Animals, Europe, Genetic Drift, Genomics, Genotype, Heterozygote, Inbreeding, Population Density, Spain, Breeding, Genetic Variation, Genetics, Population, Goats genetics
- Abstract
Background: The main goal of the current work was to infer the demographic history of seven Spanish goat breeds (Malagueña, Murciano-Granadina, Florida, Palmera, Mallorquina, Bermeya and Blanca de Rasquera) based on genome-wide diversity data generated with the Illumina Goat SNP50 BeadChip (population size, N = 176). Five additional populations from Europe (Saanen and Carpathian) and Africa (Tunisian, Djallonké and Sahel) were also included in this analysis (N = 80) for comparative purposes., Results: Our results show that the genetic background of Spanish goats traces back mainly to European breeds although signs of North African admixture were detected in two Andalusian breeds (Malagueña and Murciano-Granadina). In general, observed and expected heterozygosities were quite similar across the seven Spanish goat breeds under analysis irrespective of their population size and conservation status. For the Mallorquina and Blanca de Rasquera breeds, which have suffered strong population declines during the past decades, we observed increased frequencies of large-sized (ROH), a finding that is consistent with recent inbreeding. In contrast, a substantial part of the genome of the Palmera goat breed comprised short ROH, which suggests a strong and ancient founder effect., Conclusions: Admixture with African goats, genetic drift and inbreeding have had different effects across the seven Spanish goat breeds analysed in the current work. This has generated distinct patterns of genome-wide diversity that provide new clues about the demographic history of these populations.
- Published
- 2016
- Full Text
- View/download PDF
39. NMR-metabolomics profiling of mammary gland secretory tissue and milk serum in two goat breeds with different levels of tolerance to seasonal weight loss.
- Author
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Palma M, Hernández-Castellano LE, Castro N, Arguëllo A, Capote J, Matzapetakis M, and de Almeida AM
- Subjects
- Adaptation, Biological, Animals, Breeding, Female, Goats, Mammary Glands, Animal metabolism, Metabolome, Metabolomics methods, Milk metabolism, Nuclear Magnetic Resonance, Biomolecular, Seasons, Weight Loss
- Abstract
Goats are of special importance in the Mediterranean and tropical regions for producing a variety of dairy products. The scarcity of pastures during the dry season leads to seasonal weight loss (SWL), which affects milk production. In this work, we studied the effect of feed-restriction on two dairy goat breeds, with different tolerance levels to SWL: the Majorera breed (tolerant) and the Palmera breed (susceptible). Nuclear magnetic resonance (NMR) was used to compare the metabolome of an aqueous fraction of the mammary gland and milk serum from both breeds. Goats in mid-lactation were divided by breed, and each in two feed-regime groups: the control group and the restricted-fed group (to achieve 15-20% reduction of body weight at the end of the experiment). Milk and mammary gland samples were collected at the end of the experimental period (23rd day). (1)H NMR spectra were collected from the aqueous extract of the mammary gland biopsies and the milk serum. Profiling analysis has led to the identification of 46 metabolites in the aqueous extract of the mammary gland. Lactose, glutamate, glycine and lactate were found to be the most abundant. Analysis of milk serum allowed the identification of 50 metabolites, the most abundant being lactose, citrate and creatine. Significant differences were observed, in mammary gland biopsies and milk serum, between control and restricted-fed groups in both breeds, albeit with no differences between the breeds. Variations seem to be related to metabolism adaptation to the low-energy diet and are indicative of breed-specific microflora. Milk serum showed more metabolites varying between control and restricted groups, than the mammary gland. The Majorera breed also showed more variations than the Palmera breed in milk samples, which could be an indication of a prompt adaptation to SWL by the Majorera breed.
- Published
- 2016
- Full Text
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40. Osteopontin ablation ameliorates muscular dystrophy by shifting macrophages to a pro-regenerative phenotype.
- Author
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Capote J, Kramerova I, Martinez L, Vetrone S, Barton ER, Sweeney HL, Miceli MC, and Spencer MJ
- Subjects
- Animals, Cell Polarity, Macrophages cytology, Macrophages physiology, Mice, Mice, Inbred C57BL, Mice, Knockout, Muscles metabolism, Muscles pathology, Muscles physiology, Natural Killer T-Cells metabolism, Natural Killer T-Cells physiology, Osteopontin genetics, Osteopontin metabolism, Phenotype, Regeneration, Macrophages metabolism, Muscular Dystrophy, Animal pathology, Osteopontin physiology
- Abstract
In the degenerative disease Duchenne muscular dystrophy, inflammatory cells enter muscles in response to repetitive muscle damage. Immune factors are required for muscle regeneration, but chronic inflammation creates a profibrotic milieu that exacerbates disease progression. Osteopontin (OPN) is an immunomodulator highly expressed in dystrophic muscles. Ablation of OPN correlates with reduced fibrosis and improved muscle strength as well as reduced natural killer T (NKT) cell counts. Here, we demonstrate that the improved dystrophic phenotype observed with OPN ablation does not result from reductions in NKT cells. OPN ablation skews macrophage polarization toward a pro-regenerative phenotype by reducing M1 and M2a and increasing M2c subsets. These changes are associated with increased expression of pro-regenerative factors insulin-like growth factor 1, leukemia inhibitory factor, and urokinase-type plasminogen activator. Furthermore, altered macrophage polarization correlated with increases in muscle weight and muscle fiber diameter, resulting in long-term improvements in muscle strength and function in mdx mice. These findings suggest that OPN ablation promotes muscle repair via macrophage secretion of pro-myogenic growth factors., (© 2016 Capote et al.)
- Published
- 2016
- Full Text
- View/download PDF
41. The Goat (Capra hircus) Mammary Gland Mitochondrial Proteome: A Study on the Effect of Weight Loss Using Blue-Native PAGE and Two-Dimensional Gel Electrophoresis.
- Author
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Cugno G, Parreira JR, Ferlizza E, Hernández-Castellano LE, Carneiro M, Renaut J, Castro N, Arguello A, Capote J, Campos AM, and Almeida AM
- Subjects
- Amino Acid Sequence, Animals, Cattle, Chromatography, High Pressure Liquid, Electron Transport Chain Complex Proteins metabolism, Goats, Molecular Sequence Data, Proteomics methods, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Tandem Mass Spectrometry, Weight Loss, Electrophoresis, Gel, Two-Dimensional methods, Mammary Glands, Animal metabolism, Mitochondria metabolism, Mitochondrial Proteins metabolism, Proteome metabolism
- Abstract
Seasonal weight loss (SWL) is the most important limitation to animal production in the Tropical and Mediterranean regions, conditioning producer's incomes and the nutritional status of rural communities. It is of importance to produce strategies to oppose adverse effects of SWL. Breeds that have evolved in harsh climates have acquired tolerance to SWL through selection. Most of the factors determining such ability are related to changes in biochemical pathways as affected by SWL. In this study, a gel based proteomics strategy (BN: Blue-Native Page and 2DE: Two-dimensional gel electrophoresis) was used to characterize the mitochondrial proteome of the secretory tissue of the goat mammary gland. In addition, we have conducted an investigation of the effects of weight loss in two goat breeds with different levels of adaptation to nutritional stress: Majorera (tolerant) and Palmera (susceptible). The study used Majorera and Palmera dairy goats, divided in 4 sets, 2 for each breed: underfed group fed on wheat straw (restricted diet, so their body weight would be 15-20% reduced by the end of experiment), and a control group fed with an energy-balanced diet. At the end of the experimental period (22 days), mammary gland biopsies were obtained for all experimental groups. The proteomic analysis of the mitochondria enabled the resolution of a total of 277 proteins, and 148 (53%) were identified by MALDI-TOF/TOF mass spectrometry. Some of the proteins were identified as subunits of the glutamate dehydrogenase complex and the respiratory complexes I, II, IV, V from mitochondria, as well as numerous other proteins with functions in: metabolism, development, localization, cellular organization and biogenesis, biological regulation, response to stimulus, among others, that were mapped in both BN and 2DE gels. The comparative proteomics analysis enabled the identification of several proteins: NADH-ubiquinone oxidoreductase 75 kDa subunit and lamin B1 mitochondrial (up-regulated in the Palmera breed), Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 (up-regulated in the Majorera breed) and cytochrome b-c1 complex subunit 1, mitochondrial and Chain D, Bovine F1-C8 Sub-Complex Of Atp Synthase (down-regulated in the Majorera breed) as a consequence of weight loss.
- Published
- 2016
- Full Text
- View/download PDF
42. Establishment of the biochemical and endocrine blood profiles in the Majorera and Palmera dairy goat breeds: the effect of feed restriction.
- Author
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Lérias JR, Peña R, Hernández-Castellano LE, Capote J, Castro N, Argüello A, Araújo SS, Saco Y, Bassols A, and Almeida AM
- Subjects
- Animals, Blood Glucose, Blood Proteins, Chlorides blood, Cholesterol blood, Creatine Kinase blood, Creatinine blood, Fatty Acids, Nonesterified blood, Female, Goats genetics, Hydrocortisone, Hydroxybutyrates blood, Insulin blood, Insulin-Like Growth Factor I metabolism, Leptin, Phosphorus blood, Principal Component Analysis, Seasons, Sodium blood, Triglycerides blood, Triiodothyronine blood, Urea blood, Weight Loss, Food Deprivation physiology, Genetic Variation, Goats blood
- Abstract
Feed restriction, and seasonal weight loss (SWL), are major setbacks for animal production in the tropics and the Mediterranean. They may be solved through the use of autochthonous breeds particularly well adapted to SWL. It is therefore of major importance to determine markers of tolerance to feed restriction of putative use in animal selection. Two indigenous breeds from the Canary Islands, Palmera and Majorera, are commonly used by dairy goat farmers and, interestingly, have different phenotype characteristics albeit with a common ancestry. Indeed, Majorera is well adapted to feed restriction whereas the Palmera is susceptible to feed restriction. In addition, regardless of their importance in dairy production, there are only a limited number of reports relating to these breeds and, to the best of our knowledge, there is no description of their blood metabolite standard values under control conditions or as affected by feed restriction. In this study we analysed the blood metabolite profiles in Majorera and Palmera goats aiming to establish the differential responses to feed restriction between the two breeds and to characterise their metabolite standard values under control conditions. We observed significant differences in creatinine, urea, non-esterified fatty acids (NEFAs), cholesterol, IGF-1 and T3 due to underfeeding. Furthermore, a PCA analysis, revealed that animals submitted to undernutrition could be distinguished from the control groups, with the formation of three separate clusters (Palmera individuals after 22 d of subnutrition (PE22); Majorera individuals after 22 d of subnutrition (ME22) and animals assigned to control conditions (MC0, MC22, PC0 and PC22)), highlighting different responses of the two breeds to undernutrition.
- Published
- 2015
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43. Ancient DNA sheds light on the ancestry of pre-hispanic Canarian pigs.
- Author
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Olalde I, Capote J, Del-Arco MC, Atoche P, Delgado T, González-Anton R, Pais J, Amills M, Lalueza-Fox C, and Ramírez O
- Subjects
- Animals, Cytochromes b genetics, DNA chemistry, Genetic Variation, Haplotypes, Spain, Sus scrofa genetics, Swine genetics
- Abstract
Background: Canarian Black (CB) pigs belong to an autochthonous and endangered breed, which is spread throughout the Canarian archipelago. It is commonly accepted that they represent a relic of the pig populations that were bred by the Berbers in North Africa over millennia. It is important to note that the geographic isolation of the Canary Islands has preserved this genetic legacy intact from foreign introgressions until the Spanish conquest of the archipelago in the 15(th) century. Ten years ago, it was demonstrated that, in CB pigs, the frequency of the Asian A2 cytochrome-b haplogroup reached 73%. The current work aimed at investigating whether this observation is explained by either a recent or an ancient introgression of CB pigs with Far Eastern pigs., Results: Genetic analyses of 23 ancient samples from pre-hispanic Canarian pigs (420 to 2500 years before present) showed that Near Eastern and Far Eastern genetic signatures were totally absent in the primitive Canarian pre-hispanic pigs. Indeed, the haplotypes detected in these pigs were closely related to those of North African and European wild boars., Conclusions: Our results demonstrate that the high frequency of the Far Eastern mitochondrial cytochrome B A2 haplotype in modern Canarian Black pigs probably corresponds to a relatively recent introgression with British breeds.
- Published
- 2015
- Full Text
- View/download PDF
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