68 results on '"Basler, K"'
Search Results
2. Interventions to improve primary healthcare in rural settings: A scoping review.
- Author
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Aubrey-Basler K, Bursey K, Pike A, Penney C, Furlong B, Howells M, Al-Obaid H, Rourke J, Asghari S, and Hall A
- Subjects
- Humans, Rural Health Services organization & administration, Health Services Accessibility, Primary Health Care, Rural Population
- Abstract
Background: Residents of rural areas have poorer health status, less healthy behaviours and higher mortality than urban dwellers, issues which are commonly addressed in primary care. Strengthening primary care may be an important tool to improve the health status of rural populations., Objective: Synthesize and categorize studies that examine interventions to improve rural primary care., Eligibility Criteria: Experimental or observational studies published between January 1, 1996 and December 2022 that include an historical or concurrent control comparison., Sources of Evidence: Pubmed, CINAHL, Cochrane Library, Embase., Charting Methods: We extracted and charted data by broad category (quality, access and efficiency), study design, country of origin, publication year, aim, health condition and type of intervention studied. We assigned multiple categories to a study where relevant., Results: 372 papers met our inclusion criteria, divided among quality (82%), access (20%) and efficiency (13%) categories. A majority of papers were completed in the USA (40%), Australia (15%), China (7%) or Canada (6%). 35 (9%) papers came from countries in Africa. The most common study design was an uncontrolled before-and-after comparison (32%) and only 24% of studies used randomized designs. The number of publications each year has increased markedly over the study period from 1-2/year in 1997-99 to a peak of 49 papers in 2017., Conclusions: Despite substantial inequity in health outcomes associated with rural living, very little attention is paid to rural primary care in the scientific literature. Very few studies of rural primary care use randomized designs., Competing Interests: KAB and JR are family physicians who previously practiced in rural areas. KAB, JR, and SA are rural health services researchers with an interest in the equity of health service distribution. The authors have no other disclosures to report., (Copyright: © 2024 Aubrey-Basler et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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3. The fate of secretory cells during intestinal homeostasis, regeneration, and tumor formation is regulated by Tcf4.
- Author
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Janeckova L, Stastna M, Hrckulak D, Berkova L, Kubovciak J, Onhajzer J, Kriz V, Dostalikova S, Mullerova T, Vecerkova K, Tenglerova M, Coufal S, Kostovcikova K, Blumberg RS, Filipp D, Basler K, Valenta T, Kolar M, and Korinek V
- Abstract
The single-layer epithelium of the gastrointestinal tract is a dynamically renewing tissue that ensures nutrient absorption, secretory and barrier functions and is involved in immune responses. The basis for this homeostatic renewal is the Wnt signaling pathway. Blocking this pathway can lead to epithelial damage, while its abnormal activation can result in the development of intestinal tumors. In this study, we investigated the dynamics of intestinal epithelial cells and tumorigenesis using a conditional mouse model. Using single-cell and bulk RNA sequencing and histological analysis, we elucidated the cellular responses following the loss of specific cell types. We focused on the fate of cells in the lower parts of the intestinal crypts and the development of colon adenomas. By partially inactivating the transcription factor Tcf4, a key effector of the Wnt signaling pathway, we analyzed the regeneration of isolated hyperproliferative foci (crypts). Our results suggest that the damaged epithelium is not restored by a specific regeneration program associated with oncofetal gene production, but rather by a standard homeostatic renewal pathway. Moreover, disruption of Tcf4 in secretory progenitors resulted in a significant shift in the cell lineage from Paneth cells to goblet cells, characterized by morphological changes and loss of Paneth cell-specific genes. We also found that hyperactivation of the Wnt signaling pathway in colonic adenomas correlated with the upregulation of genes typical of Paneth cells in the intestine, followed by the emergence of secretory tumor cells producing the Wnt3 ligand. The absence of Tcf4 led to a phenotypic shift of the tumor cells towards goblet cells. Our study presents a new model of epithelial regeneration based on the genetically driven partial elimination of intestinal crypts. We highlight the critical role of Tcf4 in the control of cell lineage decisions in the intestinal epithelium and colon tumors.
- Published
- 2024
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4. The β-catenin C terminus links Wnt and sphingosine-1-phosphate signaling pathways to promote vascular remodeling and atherosclerosis.
- Author
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Oliveira-Paula GH, Liu S, Maira A, Ressa G, Ferreira GC, Quintar A, Jayakumar S, Almonte V, Parikh D, Valenta T, Basler K, Hla T, Riascos-Bernal DF, and Sibinga NES
- Subjects
- Humans, beta Catenin metabolism, Vascular Remodeling, Signal Transduction, Catenins metabolism, Atherosclerosis, Lysophospholipids, Sphingosine analogs & derivatives
- Abstract
Canonical Wnt and sphingosine-1-phosphate (S1P) signaling pathways are highly conserved systems that contribute to normal vertebrate development, with key consequences for immune, nervous, and cardiovascular system function; despite these functional overlaps, little is known about Wnt/β-catenin-S1P cross-talk. In the vascular system, both Wnt/β-catenin and S1P signals affect vessel maturation, stability, and barrier function, but information regarding their potential coordination is scant. We report an instance of functional interaction between the two pathways, including evidence that S1P receptor 1 (S1PR1) is a transcriptional target of β-catenin. By studying vascular smooth muscle cells and arterial injury response, we find a specific requirement for the β-catenin carboxyl terminus, which acts to induce S1PR1, and show that this interaction is essential for vascular remodeling. We also report that pharmacological inhibition of the β-catenin carboxyl terminus reduces S1PR1 expression, neointima formation, and atherosclerosis. These findings provide mechanistic understanding of how Wnt/β-catenin and S1P systems collaborate during vascular remodeling and inform strategies for therapeutic manipulation.
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- 2024
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5. Inactivation of the tumor suppressor gene Apc synergizes with H. pylori to induce DNA damage in murine gastric stem and progenitor cells.
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He J, Nascakova Z, Leary P, Papa G, Valenta T, Basler K, and Müller A
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- Animals, Humans, Mice, DNA Damage, Genes, Tumor Suppressor, Receptors, G-Protein-Coupled genetics, Stem Cells, Helicobacter Infections genetics, Helicobacter Infections microbiology, Helicobacter pylori genetics, Stomach Neoplasms pathology
- Abstract
Helicobacter pylori infection is a major risk factor for the development of gastric cancer. The bacteria reside in close proximity to gastric surface mucous as well as stem and progenitor cells. Here, we take advantage of wild-type and genetically engineered murine gastric organoids and organoid-derived monolayers to study the cellular targets of H. pylori -induced DNA damage and replication stress and to explore possible interactions with preexisting gastric cancer driver mutations. We find using alkaline comet assay, single-molecule DNA fiber assays, and immunofluorescence microscopy of DNA repair foci that H. pylori induces transcription-dependent DNA damage in actively replicating, Leucine-rich-repeat containing G-Protein-Coupled Receptor 5 (Lgr5)-positive antral stem and progenitor cells and their Troy-positive corpus counterparts, but not in other gastric epithelial lineages. Infection-dependent DNA damage is aggravated by Apc inactivation, but not by Trp53 or Smad4 loss, or Erbb2 overexpression. Our data suggest that H. pylori induces DNA damage in stem and progenitor cells, especially in settings of hyperproliferation due to constitutively active Wnt signaling.
- Published
- 2023
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6. Reactivation of embryonic genetic programs in tissue regeneration and disease.
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Fazilaty H and Basler K
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- Humans, Cell Plasticity, Disease Progression, Embryonic Development genetics
- Abstract
Embryonic genetic programs are reactivated in response to various types of tissue damage, providing cell plasticity for tissue regeneration or disease progression. In acute conditions, these programs remedy the damage and then halt to allow a return to homeostasis. In chronic situations, including inflammatory diseases, fibrosis and cancer, prolonged activation of embryonic programs leads to disease progression and tissue deterioration. Induction of progenitor identity and cell plasticity, for example, epithelial-mesenchymal plasticity, are critical outcomes of reactivated embryonic programs. In this Review, we describe molecular players governing reactivated embryonic genetic programs, their role during disease progression, their similarities and differences and lineage reversion in pathology and discuss associated therapeutics and drug-resistance mechanisms across many organs. We also discuss the diversity of reactivated programs in different disease contexts. A comprehensive overview of commonalities between development and disease will provide better understanding of the biology and therapeutic strategies., (© 2023. Springer Nature America, Inc.)
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- 2023
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7. The diverse nature of intestinal fibroblasts in development, homeostasis, and disease.
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Brügger MD and Basler K
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- Humans, Mice, Animals, Homeostasis, Fibroblasts metabolism, Intestines
- Abstract
Only in recent years have we begun to appreciate the involvement of fibroblasts in intestinal development, tissue homeostasis, and disease. These insights followed the advent of single-cell transcriptomics that allowed researchers to explore the heterogeneity of intestinal fibroblasts in unprecedented detail. Since researchers often defined cell types and their associated function based on the biological process they studied, there are a plethora of partially overlapping markers for different intestinal fibroblast populations. This ambiguity complicates putting different research findings into context. Here, we provide a census on the function and identity of intestinal fibroblasts in mouse and human. We propose a simplified framework consisting of three colonic and four small intestinal fibroblast populations to aid navigating the diversity of intestinal fibroblasts., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2023
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8. Terminal differentiation of villus tip enterocytes is governed by distinct Tgfβ superfamily members.
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Berková L, Fazilaty H, Yang Q, Kubovčiak J, Stastna M, Hrckulak D, Vojtechova M, Dalessi T, Brügger MD, Hausmann G, Liberali P, Korinek V, Basler K, and Valenta T
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- Ligands, Transforming Growth Factor beta metabolism, Bone Morphogenetic Proteins metabolism, Cell Differentiation, Enterocytes metabolism, Intestinal Mucosa metabolism
- Abstract
The protective and absorptive functions of the intestinal epithelium rely on differentiated enterocytes in the villi. The differentiation of enterocytes is orchestrated by sub-epithelial mesenchymal cells producing distinct ligands along the villus axis, in particular Bmps and Tgfβ. Here, we show that individual Bmp ligands and Tgfβ drive distinct enterocytic programs specific to villus zonation. Bmp4 is expressed from the centre to the upper part of the villus and activates preferentially genes connected to lipid uptake and metabolism. In contrast, Bmp2 is produced by villus tip mesenchymal cells and it influences the adhesive properties of villus tip epithelial cells and the expression of immunomodulators. Additionally, Tgfβ induces epithelial gene expression programs similar to those triggered by Bmp2. Bmp2-driven villus tip program is activated by a canonical Bmp receptor type I/Smad-dependent mechanism. Finally, we establish an organoid cultivation system that enriches villus tip enterocytes and thereby better mimics the cellular composition of the intestinal epithelium. Our data suggest that not only a Bmp gradient but also the activity of individual Bmp drives specific enterocytic programs., (© 2023 The Authors. Published under the terms of the CC BY NC ND 4.0 license.)
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- 2023
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9. Wnt/β-Catenin Signaling Pathway Is Necessary for the Specification but Not the Maintenance of the Mouse Retinal Pigment Epithelium.
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Kim JM, Min KW, Kim YJ, Smits R, Basler K, and Kim JW
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- Mice, Animals, Cell Differentiation, beta Catenin genetics, beta Catenin metabolism, Gene Expression Regulation, Neurons metabolism, Retinal Pigment Epithelium metabolism, Wnt Signaling Pathway genetics
- Abstract
β-Catenin (Ctnnb1) has been shown to play critical roles in the development and maintenance of epithelial cells, including the retinal pigment epithelium (RPE). Ctnnb1 is not only a component of intercellular junctions in the epithelium, it also functions as a transcriptional regulator in the Wnt signaling pathway. To identify which of its functional modalities is critically involved in mouse RPE development and maintenance, we varied Ctnnb1 gene content and activity in mouse RPE lineage cells and tested their impacts on mouse eye development. We found that a Ctnnb1 double mutant (Ctnnb1
dm ), which exhibits impaired transcriptional activity, could not replace Ctnnb1 in the RPE, whereas Ctnnb1Y654E , which has reduced affinity for the junctions, could do so. Expression of the constitutively active Ctnnb1∆ex3 mutant also suppressed the development of RPE, instead facilitating a ciliary cell fate. However, the post-mitotic or mature RPE was insensitive to the loss, inactivation, or constitutive activation of Ctnnb1. Collectively, our results suggest that Ctnnb1 should be maintained within an optimal range to specify RPE through transcriptional regulation of Wnt target genes in the optic neuroepithelium.- Published
- 2023
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10. Active eosinophils regulate host defence and immune responses in colitis.
- Author
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Gurtner A, Borrelli C, Gonzalez-Perez I, Bach K, Acar IE, Núñez NG, Crepaz D, Handler K, Vu VP, Lafzi A, Stirm K, Raju D, Gschwend J, Basler K, Schneider C, Slack E, Valenta T, Becher B, Krebs P, Moor AE, and Arnold IC
- Subjects
- Animals, Humans, Mice, Inflammatory Bowel Diseases immunology, Single-Cell Gene Expression Analysis, Transcriptome, Proteome, Interleukin-33, Interferon-gamma, T-Lymphocytes, B7-1 Antigen metabolism, Colitis immunology, Colitis pathology, Eosinophils classification, Eosinophils cytology, Eosinophils immunology, Eosinophils metabolism, Immunity, Intestines immunology, Intestines pathology
- Abstract
In the past decade, single-cell transcriptomics has helped to uncover new cell types and states and led to the construction of a cellular compendium of health and disease. Despite this progress, some difficult-to-sequence cells remain absent from tissue atlases. Eosinophils-elusive granulocytes that are implicated in a plethora of human pathologies
1-5 -are among these uncharted cell types. The heterogeneity of eosinophils and the gene programs that underpin their pleiotropic functions remain poorly understood. Here we provide a comprehensive single-cell transcriptomic profiling of mouse eosinophils. We identify an active and a basal population of intestinal eosinophils, which differ in their transcriptome, surface proteome and spatial localization. By means of a genome-wide CRISPR inhibition screen and functional assays, we reveal a mechanism by which interleukin-33 (IL-33) and interferon-γ (IFNγ) induce the accumulation of active eosinophils in the inflamed colon. Active eosinophils are endowed with bactericidal and T cell regulatory activity, and express the co-stimulatory molecules CD80 and PD-L1. Notably, active eosinophils are enriched in the lamina propria of a small cohort of patients with inflammatory bowel disease, and are closely associated with CD4+ T cells. Our findings provide insights into the biology of eosinophils and highlight the crucial contribution of this cell type to intestinal homeostasis, immune regulation and host defence. Furthermore, we lay a framework for the characterization of eosinophils in human gastrointestinal diseases., (© 2022. The Author(s).)- Published
- 2023
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11. Glycoprotein (GP)96 Is Essential for Maintaining Intestinal Epithelial Architecture by Supporting Its Self-Renewal Capacity.
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Häfliger J, Schwarzfischer M, Atrott K, Stanzel C, Morsy Y, Wawrzyniak M, Lang S, Valenta T, Basler K, Rogler G, Scharl M, and Spalinger MR
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- Animals, Mice, Cell Proliferation, Glycoproteins metabolism, Wnt Signaling Pathway genetics, Epithelial Cells metabolism, Intestines cytology, Membrane Glycoproteins metabolism
- Abstract
Background & Aims: Glycoprotein (GP)96 is an endoplasmic reticulum-resident master chaperone for cell surface receptors including the Wnt co-receptors low-density lipoprotein-receptor-related protein 5/6. Intestinal epithelial cell (IEC)-specific deletion of Gp96 is embryonically lethal. However, the role of GP96 in adult intestinal tissue and especially within the intestinal stem cell (ISC) niche is unknown. Here, we investigated how GP96 loss interferes with intestinal homeostasis by compromising viability, proliferation, and differentiation of IECs., Methods: Tamoxifen was used to induce Cre-mediated deletion of Gp96 in GP96-Villin
creERT2 (Cre recombinase-Estrogen-Receptor Transgene 2) mice and intestinal organoids. With H&E and immunofluorescence staining we assessed alterations in intestinal morphology and the presence and localization of IEC types. Real-time polymerase chain reaction and Western blot analysis were performed to explore the molecular mechanisms underlying the severe phenotype of Gp96 KO mice and organoids., Results: IEC-specific deletion of Gp96 in adult mice resulted in a rapid degeneration of the stem cell niche, followed by complete eradication of the epithelial layer and death within a few days. These effects were owing to severe defects in ISC renewal and premature ISC differentiation, which resulted from defective Wnt and Notch signaling. Furthermore, depletion of GP96 led to massive induction of endoplasmic reticulum stress. Although effects on ISC renewal and adequate differentiation were partly reversed upon activation of Wnt/Notch signaling, viability could not be restored, indicating that reduced viability was mediated by other mechanisms., Conclusions: Our work shows that GP96 plays a fundamental role in regulating ISC fate and epithelial regeneration and therefore is indispensable for maintaining intestinal epithelial homeostasis., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2023
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12. GATA3 mediates nonclassical β-catenin signaling in skeletal cell fate determination and ectopic chondrogenesis.
- Author
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Maruyama T, Hasegawa D, Valenta T, Haigh J, Bouchard M, Basler K, and Hsu W
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- Animals, Mice, Chondrogenesis genetics, Cell Differentiation genetics, Wnt Signaling Pathway, GATA3 Transcription Factor genetics, beta Catenin genetics, Musculoskeletal System
- Abstract
Skeletal precursors are mesenchymal in origin and can give rise to distinct sublineages. Their lineage commitment is modulated by various signaling pathways. The importance of Wnt signaling in skeletal lineage commitment has been implicated by the study of β-catenin-deficient mouse models. Ectopic chondrogenesis caused by the loss of β-catenin leads to a long-standing belief in canonical Wnt signaling that determines skeletal cell fate. As β-catenin has other functions, it remains unclear whether skeletogenic lineage commitment is solely orchestrated by canonical Wnt signaling. The study of the Wnt secretion regulator Gpr177/Wntless also raises concerns about current knowledge. Here, we show that skeletal cell fate is determined by β-catenin but independent of LEF/TCF transcription. Genomic and bioinformatic analyses further identify GATA3 as a mediator for the alternative signaling effects. GATA3 alone is sufficient to promote ectopic cartilage formation, demonstrating its essential role in mediating nonclassical β-catenin signaling in skeletogenic lineage specification.
- Published
- 2022
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13. Epithelial Wnt secretion drives the progression of inflammation-induced colon carcinoma in murine model.
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Degirmenci B, Dincer C, Demirel HC, Berkova L, Moor AE, Kahraman A, Hausmann G, Aguet M, Tuncbag N, Valenta T, and Basler K
- Abstract
Colon cancer is initiated by stem cells that escape the strict control. This process is often driven through aberrant activation of Wnt signaling by mutations in components acting downstream of the receptor complex that unfetter tumor cells from the need for Wnts. Here we describe a class of colon cancer that does not depend on mutated core components of the Wnt pathway. Genetically blocking Wnt secretion from epithelial cells of such tumors results in apoptosis, reduced expression of colon cancer markers, followed by enhanced tumor differentiation. In contrast to the normal colonic epithelium, such tumor cells autosecrete Wnts to maintain their uncontrolled proliferative behavior. In humans, we determined certain cases of colon cancers in which the Wnt pathway is hyperactive, but not through mutations in its core components. Our findings illuminate the path in therapy to find further subtypes of Wnt-dependent colon cancer that might be responsive to Wnt secretion inhibitors., Competing Interests: The authors declare no competing of interests., (© 2021 The Authors.)
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- 2021
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14. Only the Co-Transcriptional Activity of β-Catenin Is Required for the Local Regulatory Effects in Hypertrophic Chondrocytes on Developmental Bone Modeling.
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Wolff LI, Houben A, Fabritius C, Angus-Hill M, Basler K, and Hartmann C
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- Animals, Cell Differentiation, Mice, Osteoclasts metabolism, TCF Transcription Factors, Wnt Signaling Pathway, Chondrocytes metabolism, beta Catenin genetics, beta Catenin metabolism
- Abstract
In hypertrophic chondrocytes, β-catenin has two roles. First, it locally suppresses the differentiation of osteoclasts at the chondro-osseous junction by maintaining the pro-osteoclastic factor receptor activator of NF-κB ligand (RANKL) at low levels. Second, it promotes the differentiation of osteoblast-precursors from chondrocytes. Yet, β-catenin is a dual-function protein, which can either participate in cell-cell adherens junctions or serve as a transcriptional co-activator in canonical Wnt signaling interacting with T-cell factor/lymphoid enhancer-binding factor (TCF/LEF) transcription factors. Hence, whenever studying tissue-specific requirements of β-catenin using a conventional conditional knockout approach, the functional mechanisms underlying the defects in the conditional mutants remain ambiguous. To decipher mechanistically which of the two molecular functions of β-catenin is required in hypertrophic chondrocytes, we used different approaches. We analyzed the long bones of newborn mice carrying either the null-alleles of Lef1 or Tcf7, or mice in which Tcf7l2 was conditionally deleted in the hypertrophic chondrocytes, as well as double mutants for Lef1 and Tcf7l2, and Tcf7 and Tcf7l2. Furthermore, we analyzed Ctnnb1 mutant newborns expressing a signaling-defective allele that retains the cell adhesion function in hypertrophic chondrocytes. None of the analyzed Tcf/Lef single or double mutants recapitulated the previously published phenotype upon loss of β-catenin in hypertrophic chondrocytes. However, using this particular Ctnnb1 allele, maintaining cell adhesion function, we show that it is the co-transcriptional activity of β-catenin, which is required in hypertrophic chondrocytes to suppress osteoclastogenesis and to promote chondrocyte-derived osteoblast differentiation. © 2021 The Authors. Journal of Bone and Mineral Research published by Wiley Periodicals LLC on behalf of American Society for Bone and Mineral Research (ASBMR)., (© 2021 The Authors. Journal of Bone and Mineral Research published by Wiley Periodicals LLC on behalf of American Society for Bone and Mineral Research (ASBMR).)
- Published
- 2021
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15. The interactions of Bcl9/Bcl9L with β-catenin and Pygopus promote breast cancer growth, invasion, and metastasis.
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Vafaizadeh V, Buechel D, Rubinstein N, Kalathur RKR, Bazzani L, Saxena M, Valenta T, Hausmann G, Cantù C, Basler K, and Christofori G
- Subjects
- Animals, Breast Neoplasms genetics, Breast Neoplasms metabolism, Cell Line, Tumor, DNA-Binding Proteins genetics, Disease Progression, Epithelial-Mesenchymal Transition, Female, Humans, Mice, Neoplasm Invasiveness, Neoplasm Metastasis, Neoplasm Transplantation, Transcription Factors genetics, Wnt Signaling Pathway, beta Catenin genetics, Breast Neoplasms pathology, DNA-Binding Proteins metabolism, Intracellular Signaling Peptides and Proteins metabolism, Transcription Factors metabolism, beta Catenin metabolism
- Abstract
Canonical Wnt/β-catenin signaling is an established regulator of cellular state and its critical contributions to tumor initiation, malignant tumor progression and metastasis formation have been demonstrated in various cancer types. Here, we investigated how the binding of β-catenin to the transcriptional coactivators B-cell CLL/lymphoma 9 (Bcl9) and Bcl9-Like (Bcl9L) affected mammary gland carcinogenesis in the MMTV-PyMT transgenic mouse model of metastatic breast cancer. Conditional knockout of both Bcl9 and Bcl9L resulted into tumor cell death. In contrast, disrupting the interaction of Bcl9/Bcl9L with β-catenin, either by deletion of their HD2 domains or by a point mutation in the N-terminal domain of β-catenin (D164A), diminished primary tumor growth and tumor cell proliferation and reduced tumor cell invasion and lung metastasis. In comparison, the disruption of HD1 domain-mediated binding of Bcl9/Bcl9L to Pygopus had only moderate effects. Interestingly, interfering with the β-catenin-Bcl9/Bcl9L-Pygo chain of adapters only partially impaired the transcriptional response of mammary tumor cells to Wnt3a and TGFβ treatments. Together, the results indicate that Bcl9/Bcl9L modulate but are not critically required for canonical Wnt signaling in its contribution to breast cancer growth and malignant progression, a notion consistent with the "just-right" hypothesis of Wnt-driven tumor progression., (© 2021. The Author(s).)
- Published
- 2021
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16. TCF/LEF regulation of the topologically associated domain ADI promotes mESCs to exit the pluripotent ground state.
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Doumpas N, Söderholm S, Narula S, Moreira S, Doble BW, Cantù C, and Basler K
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- Animals, Benzamides pharmacology, Culture Media chemistry, Culture Media pharmacology, DNA (Cytosine-5-)-Methyltransferases antagonists & inhibitors, DNA (Cytosine-5-)-Methyltransferases genetics, DNA (Cytosine-5-)-Methyltransferases metabolism, Diphenylamine analogs & derivatives, Diphenylamine pharmacology, Down-Regulation drug effects, Gene Editing, Hepatocyte Nuclear Factor 1-alpha deficiency, Hepatocyte Nuclear Factor 1-alpha metabolism, Inducible T-Cell Co-Stimulator Ligand antagonists & inhibitors, Inducible T-Cell Co-Stimulator Ligand genetics, Inducible T-Cell Co-Stimulator Ligand metabolism, Lymphoid Enhancer-Binding Factor 1 deficiency, Lymphoid Enhancer-Binding Factor 1 metabolism, Mice, Mouse Embryonic Stem Cells cytology, Mouse Embryonic Stem Cells metabolism, Octamer Transcription Factor-3 genetics, Octamer Transcription Factor-3 metabolism, Pyridines pharmacology, Pyrimidines pharmacology, RNA Interference, RNA, Small Interfering metabolism, Transcription Factor 7-Like 1 Protein deficiency, Transcription Factor 7-Like 1 Protein metabolism, Transcription Factor 7-Like 2 Protein deficiency, Transcription Factor 7-Like 2 Protein metabolism, Transcription Factors antagonists & inhibitors, Transcription Factors genetics, Transcription Factors metabolism, beta Catenin deficiency, beta Catenin genetics, AIRE Protein, Cell Self Renewal drug effects, Hepatocyte Nuclear Factor 1-alpha genetics, Lymphoid Enhancer-Binding Factor 1 genetics, Transcription Factor 7-Like 1 Protein genetics, Transcription Factor 7-Like 2 Protein genetics
- Abstract
Mouse embryonic stem cells (mESCs) can be maintained in vitro in defined N2B27 medium supplemented with two chemical inhibitors for GSK3 and MEK (2i) and the cytokine leukemia inhibitory factor (LIF), which act synergistically to promote self-renewal and pluripotency. Here, we find that genetic deletion of the four genes encoding the TCF/LEF transcription factors confers mESCs with the ability to self-renew in N2B27 medium alone. TCF/LEF quadruple knockout (qKO) mESCs display dysregulation of several genes, including Aire, Dnmt3l, and IcosL, located adjacent to each other within a topologically associated domain (TAD). Aire, Dnmt3l, and IcosL appear to be regulated by TCF/LEF in a β-catenin independent manner. Moreover, downregulation of Aire and Dnmt3l in wild-type mESCs mimics the loss of TCF/LEF and increases mESC survival in the absence of 2iL. Hence, this study identifies TCF/LEF effectors that mediate exit from the pluripotent state., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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17. Parsing β-catenin's cell adhesion and Wnt signaling functions in malignant mammary tumor progression.
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Buechel D, Sugiyama N, Rubinstein N, Saxena M, Kalathur RKR, Lüönd F, Vafaizadeh V, Valenta T, Hausmann G, Cantù C, Basler K, and Christofori G
- Subjects
- Animals, Apoptosis, Cell Cycle, Cell Movement, Epithelial-Mesenchymal Transition drug effects, Female, Gene Expression Regulation, Neoplastic drug effects, Mammary Neoplasms, Animal genetics, Mice, Mice, Transgenic, Neoplasm Invasiveness, Neoplasm Metastasis, Transcriptome, Transforming Growth Factor beta pharmacology, Wnt3A Protein genetics, beta Catenin genetics, Cell Adhesion physiology, Mammary Neoplasms, Animal metabolism, Signal Transduction physiology, Wnt3A Protein metabolism, beta Catenin metabolism
- Abstract
During malignant progression, epithelial cancer cells dissolve their cell-cell adhesion and gain invasive features. By virtue of its dual function, β-catenin contributes to cadherin-mediated cell-cell adhesion, and it determines the transcriptional output of Wnt signaling: via its N terminus, it recruits the signaling coactivators Bcl9 and Pygopus, and via the C terminus, it interacts with the general transcriptional machinery. This duality confounds the simple loss-of-function analysis of Wnt signaling in cancer progression. In many cancer types including breast cancer, the functional contribution of β-catenin's transcriptional activities, as compared to its adhesion functions, to tumor progression has remained elusive. Employing the mouse mammary tumor virus (MMTV)-PyMT mouse model of metastatic breast cancer, we compared the complete elimination of β-catenin with the specific ablation of its signaling outputs in mammary tumor cells. Notably, the complete lack of β-catenin resulted in massive apoptosis of mammary tumor cells. In contrast, the loss of β-catenin's transcriptional activity resulted in a reduction of primary tumor growth, tumor invasion, and metastasis formation in vivo. These phenotypic changes were reflected by stalled cell cycle progression and diminished epithelial-mesenchymal transition (EMT) and cell migration of breast cancer cells in vitro. Transcriptome analysis revealed subsets of genes which were specifically regulated by β-catenin's transcriptional activities upon stimulation with Wnt3a or during TGF-β-induced EMT. Our results uncouple the signaling from the adhesion function of β-catenin and underline the importance of Wnt/β-catenin-dependent transcription in malignant tumor progression of breast cancer., Competing Interests: The authors declare no competing interest.
- Published
- 2021
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18. Epigenetic control of melanoma cell invasiveness by the stem cell factor SALL4.
- Author
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Diener J, Baggiolini A, Pernebrink M, Dalcher D, Lerra L, Cheng PF, Varum S, Häusel J, Stierli S, Treier M, Studer L, Basler K, Levesque MP, Dummer R, Santoro R, Cantù C, and Sommer L
- Subjects
- Acetylation, Animals, Base Sequence, Carcinogenesis genetics, Carcinogenesis pathology, Cell Adhesion genetics, Cell Line, Tumor, Cell Lineage, Cell Proliferation, DNA-Binding Proteins metabolism, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Histone Deacetylase 2 metabolism, Histones metabolism, Humans, Melanocytes metabolism, Melanocytes pathology, Mice, Nude, Mice, Transgenic, Neoplasm Invasiveness, Neoplasm Micrometastasis, Protein Binding, Tumor Burden, Mice, Epigenesis, Genetic, Melanoma genetics, Melanoma pathology, Skin Neoplasms genetics, Skin Neoplasms pathology, Stem Cell Factor metabolism, Transcription Factors metabolism
- Abstract
Melanoma cells rely on developmental programs during tumor initiation and progression. Here we show that the embryonic stem cell (ESC) factor Sall4 is re-expressed in the Tyr::Nras
Q61K ; Cdkn2a-/- melanoma model and that its expression is necessary for primary melanoma formation. Surprisingly, while Sall4 loss prevents tumor formation, it promotes micrometastases to distant organs in this melanoma-prone mouse model. Transcriptional profiling and in vitro assays using human melanoma cells demonstrate that SALL4 loss induces a phenotype switch and the acquisition of an invasive phenotype. We show that SALL4 negatively regulates invasiveness through interaction with the histone deacetylase (HDAC) 2 and direct co-binding to a set of invasiveness genes. Consequently, SALL4 knock down, as well as HDAC inhibition, promote the expression of an invasive signature, while inhibition of histone acetylation partially reverts the invasiveness program induced by SALL4 loss. Thus, SALL4 appears to regulate phenotype switching in melanoma through an HDAC2-mediated mechanism., (© 2021. The Author(s).)- Published
- 2021
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19. Tracing colonic embryonic transcriptional profiles and their reactivation upon intestinal damage.
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Fazilaty H, Brügger MD, Valenta T, Szczerba BM, Berkova L, Doumpas N, Hausmann G, Scharl M, and Basler K
- Subjects
- Animals, Cell Differentiation, Colitis genetics, Disease Models, Animal, Embryo, Mammalian metabolism, Gene Expression Regulation, Developmental, Humans, Inflammatory Bowel Diseases genetics, Inflammatory Bowel Diseases pathology, Intestinal Mucosa embryology, Intestinal Mucosa metabolism, Intestinal Mucosa pathology, Mesoderm embryology, Mice, Inbred C57BL, Single-Cell Analysis, Mice, Colon embryology, Colon pathology, Gene Expression Profiling
- Abstract
We lack a holistic understanding of the genetic programs orchestrating embryonic colon morphogenesis and governing damage response in the adult. A window into these programs is the transcriptomes of the epithelial and mesenchymal cell populations in the colon. Performing unbiased single-cell transcriptomic analyses of the developing mouse colon at different embryonic stages (embryonic day 14.5 [E14.5], E15.5, and E18.5), we capture cellular and molecular profiles of the stages before, during, and after the appearance of crypt structures, as well as in a model of adult colitis. The data suggest most adult lineages are established by E18.5. We find embryonic-specific gene expression profiles and cell populations that reappear in response to tissue damage. Comparison of the datasets from mice and human colitis suggests the processes are conserved. In this study, we provide a comprehensive single-cell atlas of the developing mouse colon and evidence for the reactivation of embryonic genes in disease., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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20. Differential regulation of β-catenin-mediated transcription via N- and C-terminal co-factors governs identity of murine intestinal epithelial stem cells.
- Author
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Borrelli C, Valenta T, Handler K, Vélez K, Gurtner A, Moro G, Lafzi A, Roditi LV, Hausmann G, Arnold IC, Moor AE, and Basler K
- Subjects
- Algorithms, Animals, Base Sequence, Cell Differentiation, Cell Proliferation, Chromatin metabolism, Chromatin Assembly and Disassembly, Homeostasis, Hyperplasia, JNK Mitogen-Activated Protein Kinases metabolism, Mice, Mutant Proteins metabolism, Mutation genetics, Organoids metabolism, Phenotype, RNA, Messenger genetics, RNA, Messenger metabolism, Signal Transduction, Intestinal Mucosa cytology, Stem Cells metabolism, Transcription Factors metabolism, Transcription, Genetic, beta Catenin chemistry, beta Catenin metabolism
- Abstract
The homeostasis of the gut epithelium relies upon continuous renewal and proliferation of crypt-resident intestinal epithelial stem cells (IESCs). Wnt/β-catenin signaling is required for IESC maintenance, however, it remains unclear how this pathway selectively governs the identity and proliferative decisions of IESCs. Here, we took advantage of knock-in mice harboring transgenic β-catenin alleles with mutations that specifically impair the recruitment of N- or C-terminal transcriptional co-factors. We show that C-terminally-recruited transcriptional co-factors of β-catenin act as all-or-nothing regulators of Wnt-target gene expression. Blocking their interactions with β-catenin rapidly induces loss of IESCs and intestinal homeostasis. Conversely, N-terminally recruited co-factors fine-tune β-catenin's transcriptional output to ensure proper self-renewal and proliferative behaviour of IESCs. Impairment of N-terminal interactions triggers transient hyperproliferation of IESCs, eventually resulting in exhaustion of the self-renewing stem cell pool. IESC mis-differentiation, accompanied by unfolded protein response stress and immune infiltration, results in a process resembling aberrant "villisation" of intestinal crypts. Our data suggest that IESC-specific Wnt/β-catenin output requires selective modulation of gene expression by transcriptional co-factors.
- Published
- 2021
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21. Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis.
- Author
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Brügger MD, Valenta T, Fazilaty H, Hausmann G, and Basler K
- Subjects
- Animals, Bone Morphogenetic Proteins metabolism, Cell Differentiation physiology, Cell Proliferation physiology, Colon physiology, Epithelial Cells metabolism, Female, Gene Expression Profiling methods, Homeostasis, Intestinal Mucosa metabolism, Intestines physiology, Mesoderm cytology, Mesoderm physiology, Mice, Mice, Inbred C57BL, Signal Transduction, Single-Cell Analysis methods, Stem Cells cytology, Transcriptome genetics, Colon metabolism, Fibroblasts classification, Fibroblasts metabolism
- Abstract
Despite recent progress in recognizing the importance of mesenchymal cells for the homeostasis of the intestinal system, the current picture of how these cells communicate with the associated epithelial layer remains unclear. To describe the relevant cell populations in an unbiased manner, we carried out a single-cell transcriptome analysis of the adult murine colon, producing a high-quality atlas of matched colonic epithelium and mesenchyme. We identify two crypt-associated colonic fibroblast populations that are demarcated by different strengths of platelet-derived growth factor receptor A (Pdgfra) expression. Crypt-bottom fibroblasts (CBFs), close to the intestinal stem cells, express low levels of Pdgfra and secrete canonical Wnt ligands, Wnt potentiators, and bone morphogenetic protein (Bmp) inhibitors. Crypt-top fibroblasts (CTFs) exhibit high Pdgfra levels and secrete noncanonical Wnts and Bmp ligands. While the Pdgfralow cells maintain intestinal stem cell proliferation, the Pdgfrahigh cells induce differentiation of the epithelial cells. Our findings enhance our understanding of the crosstalk between various colonic epithelial cells and their associated mesenchymal signaling hubs along the crypt axis-placing differential Pdgfra expression levels in the spotlight of intestinal fibroblast identity., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
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22. A Pygopus 2-Histone Interaction Is Critical for Cancer Cell Dedifferentiation and Progression in Malignant Breast Cancer.
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Saxena M, Kalathur RKR, Rubinstein N, Vettiger A, Sugiyama N, Neutzner M, Coto-Llerena M, Kancherla V, Ercan C, Piscuoglio S, Fischer J, Fagiani E, Cantù C, Basler K, and Christofori G
- Subjects
- Animals, Disease Progression, Female, Gene Knock-In Techniques, Mice, Mice, Inbred C57BL, Cell Dedifferentiation physiology, Gene Expression Regulation, Neoplastic physiology, Histones metabolism, Intracellular Signaling Peptides and Proteins metabolism, Mammary Neoplasms, Experimental pathology
- Abstract
Pygopus 2 (Pygo2) is a coactivator of Wnt/β-catenin signaling that can bind bi- or trimethylated lysine 4 of histone-3 (H3K4me
2/3 ) and participate in chromatin reading and writing. It remains unknown whether the Pygo2-H3K4me2/3 association has a functional relevance in breast cancer progression in vivo . To investigate the functional relevance of histone-binding activity of Pygo2 in malignant progression of breast cancer, we generated a knock-in mouse model where binding of Pygo2 to H3K4me2/3 was rendered ineffective. Loss of Pygo2-histone interaction resulted in smaller, differentiated, and less metastatic tumors, due, in part, to decreased canonical Wnt/β-catenin signaling. RNA- and ATAC-sequencing analyses of tumor-derived cell lines revealed downregulation of TGFβ signaling and upregulation of differentiation pathways such as PDGFR signaling. Increased differentiation correlated with a luminal cell fate that could be reversed by inhibition of PDGFR activity. Mechanistically, the Pygo2-histone interaction potentiated Wnt/β-catenin signaling, in part, by repressing the expression of Wnt signaling antagonists. Furthermore, Pygo2 and β-catenin regulated the expression of miR-29 family members, which, in turn, repressed PDGFR expression to promote dedifferentiation of wild-type Pygo2 mammary epithelial tumor cells. Collectively, these results demonstrate that the histone binding function of Pygo2 is important for driving dedifferentiation and malignancy of breast tumors, and loss of this binding activates various differentiation pathways that attenuate primary tumor growth and metastasis formation. Interfering with the Pygo2-H3K4me2/3 interaction may therefore serve as an attractive therapeutic target for metastatic breast cancer. SIGNIFICANCE: Pygo2 represents a potential therapeutic target in metastatic breast cancer, as its histone-binding capability promotes β-catenin-mediated Wnt signaling and transcriptional control in breast cancer cell dedifferentiation, EMT, and metastasis., (©2020 American Association for Cancer Research.)- Published
- 2020
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23. TBX3 acts as tissue-specific component of the Wnt/β-catenin transcriptional complex.
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Zimmerli D, Borrelli C, Jauregi-Miguel A, Söderholm S, Brütsch S, Doumpas N, Reichmuth J, Murphy-Seiler F, Aguet M, Basler K, Moor AE, and Cantù C
- Subjects
- Animals, Female, HCT116 Cells, Humans, Male, Mice, Organ Specificity, T-Box Domain Proteins metabolism, Transcription Factors metabolism, Tumor Cells, Cultured, Zebrafish, T-Box Domain Proteins genetics, Transcription Factors genetics, Wnt Signaling Pathway
- Abstract
BCL9 and PYGO are β-catenin cofactors that enhance the transcription of Wnt target genes. They have been proposed as therapeutic targets to diminish Wnt signaling output in intestinal malignancies. Here we find that, in colorectal cancer cells and in developing mouse forelimbs, BCL9 proteins sustain the action of β-catenin in a largely PYGO-independent manner. Our genetic analyses implied that BCL9 necessitates other interaction partners in mediating its transcriptional output. We identified the transcription factor TBX3 as a candidate tissue-specific member of the β-catenin transcriptional complex. In developing forelimbs, both TBX3 and BCL9 occupy a large number of Wnt-responsive regulatory elements, genome-wide. Moreover, mutations in Bcl9 affect the expression of TBX3 targets in vivo, and modulation of TBX3 abundance impacts on Wnt target genes transcription in a β-catenin- and TCF/LEF-dependent manner. Finally, TBX3 overexpression exacerbates the metastatic potential of Wnt-dependent human colorectal cancer cells. Our work implicates TBX3 as context-dependent component of the Wnt/β-catenin-dependent transcriptional complex., Competing Interests: DZ, CB, AJ, SS, SB, ND, JR, FM, MA, KB, AM, CC No competing interests declared, (© 2020, Zimmerli et al.)
- Published
- 2020
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24. Anchor Away - A Fast, Reliable and Reversible Technique To Inhibit Proteins in Drosophila melanogaster .
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Bosch PS, Pepperl J, and Basler K
- Subjects
- Animals, Drosophila metabolism, Phenotype, RNA Interference, Drosophila Proteins genetics, Drosophila Proteins metabolism, Drosophila melanogaster genetics, Drosophila melanogaster metabolism
- Abstract
Several techniques have been developed to study specific gene function in loss-of-function situations. In Drosophila melanoga st er , RNAi and the generation of mutant clones are widely used. However, both techniques have the limitation that there is a significant time lag before gene function is abolished. Given the relatively rapid development of Drosophila , such perdurance is a serious impediment to study gene function. Here we describe the adaptation of the anchor-away technique for use in Drosophila Anchor-away was originally developed in yeast to quickly and efficiently abrogate the function of nuclear proteins by sequestering - anchoring - them away in a different cellular compartment. The required components are present in the cells, and the system is triggered by the addition of rapamycin, resulting in a rapid generation of a loss-of-function situation. We provide here proof of principle for the system by producing loss-of-function situations for two nuclear proteins - Pygopus and Brinker. The system allows to study the requirement of any protein during any time window, and at the same time circumvents difficulties, such as off-target effects or variable phenotypes, which are inherent in other techniques, for example RNAi., (Copyright © 2020 Sanchez Bosch et al.)
- Published
- 2020
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25. Cryo-EM structure of the Hedgehog release protein Dispatched.
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Cannac F, Qi C, Falschlunger J, Hausmann G, Basler K, and Korkhov VM
- Subjects
- Animals, Cryoelectron Microscopy, Drosophila melanogaster metabolism, Membrane Proteins metabolism, Signal Transduction, Drosophila Proteins genetics, Drosophila Proteins metabolism, Hedgehog Proteins chemistry
- Abstract
The Hedgehog (Hh) signaling pathway controls embryonic development and adult tissue homeostasis in multicellular organisms. In Drosophila melanogaster , the pathway is primed by secretion of a dually lipid-modified morphogen, Hh, a process dependent on a membrane-integral protein Dispatched. Although Dispatched is a critical component of the pathway, the structural basis of its activity has, so far, not been described. Here, we describe a cryo-electron microscopy structure of the D. melanogaster Dispatched at 3.2-Å resolution. The ectodomains of Dispatched adopt an open conformation suggestive of a receptor-chaperone role. A three-dimensional reconstruction of Dispatched bound to Hh confirms the ability of Dispatched to bind Hh but using a unique mode distinct from those previously observed in structures of Hh complexes. The structure may represent the state of the complex that precedes shedding of Hh from the surface of the morphogen-releasing cell., (Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).)
- Published
- 2020
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26. Is there a female cycle of violence after exposure to childhood maltreatment? A meta-analysis.
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Augsburger M, Basler K, and Maercker A
- Subjects
- Adult, Female, Humans, Adult Survivors of Child Abuse statistics & numerical data, Adverse Childhood Experiences statistics & numerical data, Aggression, Violence statistics & numerical data, Women
- Abstract
Several studies have demonstrated a vicious cycle of violence, in which experiences of childhood maltreatment (CM) transition into later perpetration of aggressive acts. But evidence for the presence of this cycle in adult women is mixed. The aim of this meta-analysis is to investigate the strength of associations and the mechanisms underlying a cycle of violence in women. Databases were searched for terms related to female aggression, violence, delinquency, antisocial behavior, or offending in addition to exposure to traumatic experiences, abuse, or maltreatment during childhood. Only peer-reviewed studies were included that investigated associations between any type of CM and different acts of aggression. Multi-level meta-analyses were applied, as well as meta-regressions, all based on Cohen's d. K = 34 studies were identified. The overall association between exposure to CM was in the positive but small range (Cohen's d = 0.30). There was no significant difference between specific types of abuse and/or neglect. However, associations were smaller for the perpetration of sexual aggression and violent crime compared with other acts of aggression. These findings underline the long-lasting and devastating impact of CM, including types of maltreatment that were long assumed to be less severe. Due to the limited number of available studies, interactions between types of CM and aggression could not be modeled, thus compromising their probable interacting contribution to the cycle of violence. Early interventions targeting families and women at risk are critical in order to prevent ongoing cycles of violence.
- Published
- 2019
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27. CRISPR-induced double-strand breaks trigger recombination between homologous chromosome arms.
- Author
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Brunner E, Yagi R, Debrunner M, Beck-Schneider D, Burger A, Escher E, Mosimann C, Hausmann G, and Basler K
- Subjects
- Animals, Base Sequence, CRISPR-Cas Systems, Drosophila genetics, Gene Editing, Gene Expression, Gene Targeting, Genes, Reporter, Nucleic Acid Conformation, Phenotype, RNA, Guide, CRISPR-Cas Systems genetics, Chromosomes, Clustered Regularly Interspaced Short Palindromic Repeats, DNA Breaks, Double-Stranded, Homologous Recombination
- Abstract
CRISPR-Cas9-based genome editing has transformed the life sciences, enabling virtually unlimited genetic manipulation of genomes: The RNA-guided Cas9 endonuclease cuts DNA at a specific target sequence and the resulting double-strand breaks are mended by one of the intrinsic cellular repair pathways. Imprecise double-strand repair will introduce random mutations such as indels or point mutations, whereas precise editing will restore or specifically edit the locus as mandated by an endogenous or exogenously provided template. Recent studies indicate that CRISPR-induced DNA cuts may also result in the exchange of genetic information between homologous chromosome arms. However, conclusive data of such recombination events in higher eukaryotes are lacking. Here, we show that in Drosophila , the detected Cas9-mediated editing events frequently resulted in germline-transmitted exchange of chromosome arms-often without indels. These findings demonstrate the feasibility of using the system for generating recombinants and also highlight an unforeseen risk of using CRISPR-Cas9 for therapeutic intervention., (© 2019 Brunner et al.)
- Published
- 2019
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28. Yin Yang 1 sustains biosynthetic demands during brain development in a stage-specific manner.
- Author
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Zurkirchen L, Varum S, Giger S, Klug A, Häusel J, Bossart R, Zemke M, Cantù C, Atak ZK, Zamboni N, Basler K, and Sommer L
- Subjects
- Animals, Cell Proliferation genetics, Cell Survival genetics, Cells, Cultured, Embryo, Mammalian, Female, G1 Phase Cell Cycle Checkpoints genetics, Gene Knockout Techniques, Metabolic Networks and Pathways physiology, Mice, Mice, Transgenic, Models, Animal, Primary Cell Culture, RNA, Small Interfering metabolism, Cerebral Cortex growth & development, Gene Expression Regulation, Developmental physiology, Neural Stem Cells physiology, YY1 Transcription Factor physiology
- Abstract
The transcription factor Yin Yang 1 (YY1) plays an important role in human disease. It is often overexpressed in cancers and mutations can lead to a congenital haploinsufficiency syndrome characterized by craniofacial dysmorphisms and neurological dysfunctions, consistent with a role in brain development. Here, we show that Yy1 controls murine cerebral cortex development in a stage-dependent manner. By regulating a wide range of metabolic pathways and protein translation, Yy1 maintains proliferation and survival of neural progenitor cells (NPCs) at early stages of brain development. Despite its constitutive expression, however, the dependence on Yy1 declines over the course of corticogenesis. This is associated with decreasing importance of processes controlled by Yy1 during development, as reflected by diminished protein synthesis rates at later developmental stages. Thus, our study unravels a novel role for Yy1 as a stage-dependent regulator of brain development and shows that biosynthetic demands of NPCs dynamically change throughout development.
- Published
- 2019
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29. A Comprehensive Drosophila melanogaster Transcription Factor Interactome.
- Author
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Shokri L, Inukai S, Hafner A, Weinand K, Hens K, Vedenko A, Gisselbrecht SS, Dainese R, Bischof J, Furger E, Feuz JD, Basler K, Deplancke B, and Bulyk ML
- Subjects
- Animals, Binding Sites, DNA chemistry, DNA metabolism, Gene Expression Regulation, Microscopy, Fluorescence, Protein Interaction Maps genetics, Regulatory Elements, Transcriptional, Saccharomyces cerevisiae metabolism, Transcription Factors genetics, Two-Hybrid System Techniques, Drosophila melanogaster metabolism, Transcription Factors metabolism
- Abstract
Combinatorial interactions among transcription factors (TFs) play essential roles in generating gene expression specificity and diversity in metazoans. Using yeast 2-hybrid (Y2H) assays on nearly all sequence-specific Drosophila TFs, we identified 1,983 protein-protein interactions (PPIs), more than doubling the number of currently known PPIs among Drosophila TFs. For quality assessment, we validated a subset of our interactions using MITOMI and bimolecular fluorescence complementation assays. We combined our interactome with prior PPI data to generate an integrated Drosophila TF-TF binary interaction network. Our analysis of ChIP-seq data, integrating PPI and gene expression information, uncovered different modes by which interacting TFs are recruited to DNA. We further demonstrate the utility of our Drosophila interactome in shedding light on human TF-TF interactions. This study reveals how TFs interact to bind regulatory elements in vivo and serves as a resource of Drosophila TF-TF binary PPIs for understanding tissue-specific gene regulation., (Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2019
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30. Yin Yang 1 Orchestrates a Metabolic Program Required for Both Neural Crest Development and Melanoma Formation.
- Author
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Varum S, Baggiolini A, Zurkirchen L, Atak ZK, Cantù C, Marzorati E, Bossart R, Wouters J, Häusel J, Tuncer E, Zingg D, Veen D, John N, Balz M, Levesque MP, Basler K, Aerts S, Zamboni N, Dummer R, and Sommer L
- Subjects
- Animals, Cell Line, Tumor, Humans, Mice, Mice, Knockout, Mice, Transgenic, Neural Stem Cells cytology, Neural Stem Cells metabolism, YY1 Transcription Factor deficiency, Melanoma metabolism, Melanoma pathology, Neural Crest cytology, Neural Crest metabolism, YY1 Transcription Factor metabolism
- Abstract
Increasing evidence suggests that cancer cells highjack developmental programs for disease initiation and progression. Melanoma arises from melanocytes that originate during development from neural crest stem cells (NCSCs). Here, we identified the transcription factor Yin Yang 1 (Yy1) as an NCSCs regulator. Conditional deletion of Yy1 in NCSCs resulted in stage-dependent hypoplasia of all major neural crest derivatives due to decreased proliferation and increased cell death. Moreover, conditional ablation of one Yy1 allele in a melanoma mouse model prevented tumorigenesis, indicating a particular susceptibility of melanoma cells to reduced Yy1 levels. Combined RNA sequencing (RNA-seq), chromatin immunoprecipitation (ChIP)-seq, and untargeted metabolomics demonstrated that YY1 governs multiple metabolic pathways and protein synthesis in both NCSCs and melanoma. In addition to directly regulating a metabolic gene set, YY1 can act upstream of MITF/c-MYC as part of a gene regulatory network controlling metabolism. Thus, both NCSC development and melanoma formation depend on an intricate YY1-controlled metabolic program., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2019
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31. Reactivation of a developmental Bmp2 signaling center is required for therapeutic control of the murine periosteal niche.
- Author
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Salazar VS, Capelo LP, Cantù C, Zimmerli D, Gosalia N, Pregizer S, Cox K, Ohte S, Feigenson M, Gamer L, Nyman JS, Carey DJ, Economides A, Basler K, and Rosen V
- Subjects
- Animals, Cell Proliferation genetics, DNA-Binding Proteins genetics, Fractures, Bone genetics, Fractures, Bone pathology, Gene Expression Regulation, Developmental genetics, Homeodomain Proteins genetics, Humans, Mice, Periosteum metabolism, Signal Transduction genetics, Smad1 Protein genetics, Sp7 Transcription Factor genetics, Transcription Factors genetics, Bone Morphogenetic Protein 2 genetics, Osteogenesis genetics, Periosteum growth & development
- Abstract
Two decades after signals controlling bone length were discovered, the endogenous ligands determining bone width remain unknown. We show that postnatal establishment of normal bone width in mice, as mediated by bone-forming activity of the periosteum, requires BMP signaling at the innermost layer of the periosteal niche. This developmental signaling center becomes quiescent during adult life. Its reactivation however, is necessary for periosteal growth, enhanced bone strength, and accelerated fracture repair in response to bone-anabolic therapies used in clinical orthopedic settings. Although many BMPs are expressed in bone, periosteal BMP signaling and bone formation require only Bmp2 in the Prx1-Cre lineage. Mechanistically, BMP2 functions downstream of Lrp5/6 pathway to activate a conserved regulatory element upstream of Sp7 via recruitment of Smad1 and Grhl3. Consistent with our findings, human variants of BMP2 and GRHL3 are associated with increased risk of fractures., Competing Interests: VS, LC, CC, DZ, SP, KC, SO, MF, LG, JN, DC, KB, VR No competing interests declared, NG, AE Employee of Regeneron Pharmaceuticals. There are no other competing interests to declare., (© 2019, Salazar et al.)
- Published
- 2019
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32. Pharmacophore-guided discovery of CDC25 inhibitors causing cell cycle arrest and tumor regression.
- Author
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Kabakci Z, Käppeli S, Cantù C, Jensen LD, König C, Toggweiler J, Gentili C, Ribaudo G, Zagotto G, Basler K, Pinna LA, Cozza G, and Ferrari S
- Subjects
- Adenomatous Polyposis Coli Protein genetics, Animals, Cell Cycle drug effects, Cell Cycle Checkpoints genetics, Cell Division genetics, Crystallography, X-Ray, Enzyme Inhibitors pharmacology, Heterografts, Humans, Mice, Mitosis genetics, Molecular Docking Simulation, Naphthoquinones pharmacology, Neoplasms pathology, cdc25 Phosphatases antagonists & inhibitors, cdc25 Phosphatases chemistry, cdc25 Phosphatases ultrastructure, CDC2 Protein Kinase genetics, Neoplasms genetics, Protein Conformation, cdc25 Phosphatases genetics
- Abstract
CDC25 phosphatases play a key role in cell cycle transitions and are important targets for cancer therapy. Here, we set out to discover novel CDC25 inhibitors. Using a combination of computational methods, we defined a minimal common pharmacophore in established CDC25 inhibitors and performed virtual screening of a proprietary library. Based on the availability of crystal structures for CDC25A and CDC25B, we implemented a molecular docking strategy and carried out hit expansion/optimization. Enzymatic assays revealed that naphthoquinone scaffolds were the most promising CDC25 inhibitors among selected hits. At the molecular level, the compounds acted through a mixed-type mechanism of inhibition of phosphatase activity, involving reversible oxidation of cysteine residues. In 2D cell cultures, the compounds caused arrest of the cell cycle at the G1/S or at the G2/M transition. Mitotic markers analysis and time-lapse microscopy confirmed that CDK1 activity was impaired and that mitotic arrest was followed by death. Finally, the compounds induced differentiation, accompanied by decreased stemness properties, in intestinal crypt stem cell-derived Apc/K-Ras-mutant mouse organoids, and led to tumor regression and reduction of metastatic potential in zebrafish embryo xenografts used as in vivo model.
- Published
- 2019
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33. TCF/LEF dependent and independent transcriptional regulation of Wnt/β-catenin target genes.
- Author
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Doumpas N, Lampart F, Robinson MD, Lentini A, Nestor CE, Cantù C, and Basler K
- Subjects
- CRISPR-Cas Systems, Gene Editing, Gene Expression Regulation, HEK293 Cells, Humans, TCF Transcription Factors metabolism, Exome Sequencing methods, Wnt Signaling Pathway, Gene Expression Profiling methods, TCF Transcription Factors genetics, Transcription, Genetic, beta Catenin metabolism
- Abstract
During canonical Wnt signalling, the activity of nuclear β-catenin is largely mediated by the TCF/LEF family of transcription factors. To challenge this view, we used the CRISPR/Cas9 genome editing approach to generate HEK 293T cell clones lacking all four TCF/LEF genes. By performing unbiased whole transcriptome sequencing analysis, we found that a subset of β-catenin transcriptional targets did not require TCF/LEF factors for their regulation. Consistent with this finding, we observed in a genome-wide analysis that β-catenin occupied specific genomic regions in the absence of TCF/LEF Finally, we revealed the existence of a transcriptional activity of β-catenin that specifically appears when TCF/LEF factors are absent, and refer to this as β-catenin-GHOST response. Collectively, this study uncovers a previously neglected modus operandi of β-catenin that bypasses the TCF/LEF transcription factors., (© 2018 The Authors.)
- Published
- 2019
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34. Xrp1 is a transcription factor required for cell competition-driven elimination of loser cells.
- Author
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Baillon L, Germani F, Rockel C, Hilchenbach J, and Basler K
- Subjects
- Animals, Apoptosis genetics, CCAAT-Enhancer-Binding Proteins genetics, Drosophila melanogaster genetics, Gene Expression Regulation genetics, Ribosomes genetics, Transcription, Genetic genetics, Transcriptional Activation genetics, Up-Regulation genetics, Cell Communication genetics, DNA-Binding Proteins genetics, Drosophila Proteins genetics, Transcription Factors genetics
- Abstract
The elimination of unfit cells from a tissue is a process known in Drosophila and mammals as cell competition. In a well-studied paradigm "loser" cells that are heterozygous mutant for a haploinsufficient ribosomal protein gene are eliminated from developing tissues via apoptosis when surrounded by fitter wild-type cells, referred to as "winner" cells. However, the mechanisms underlying the induction of this phenomenon are not fully understood. Here we report that a CCAAT-Enhancer-Binding Protein (C/EBP), Xrp1, which is known to help maintaining genomic stability after genotoxic stress, is necessary for the elimination of loser clones in cell competition. In loser cells, Xrp1 is transcriptionally upregulated by an autoregulatory loop and is able to trigger apoptosis - driving cell elimination. We further show that Xrp1 acts in the nucleus to regulate the transcription of several genes that have been previously involved in cell competition. We therefore speculate that Xrp1 might play a fundamental role as a molecular caretaker of the genomic integrity of tissues.
- Published
- 2018
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35. The Toll pathway inhibits tissue growth and regulates cell fitness in an infection-dependent manner.
- Author
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Germani F, Hain D, Sternlicht D, Moreno E, and Basler K
- Subjects
- Animals, Apoptosis, Cell Survival, Drosophila melanogaster metabolism, Models, Biological, Aspergillus niger physiology, Drosophila melanogaster growth & development, Drosophila melanogaster microbiology, Escherichia coli physiology, Organogenesis, Signal Transduction, Toll-Like Receptors metabolism
- Abstract
The Toll pathway regulates the cellular response to infection via the transcriptional upregulation of antimicrobial peptides. In Drosophila , apart from its role in innate immunity, this pathway has also been reported to be important for the elimination of loser cells in a process referred to as cell competition, which can be locally triggered by secreted factors released from winner cells. In this work, we provide evidence that the inhibition of Toll signaling not only increases the fitness of loser cells, but also bestows a clonal growth advantage on wild-type cells. We further demonstrate that this growth advantage depends on basal infection levels since it is no longer present under axenic conditions but exacerbated upon intense pathogen exposure. Thus, the Toll pathway functions as a fine-tuned pro-apoptotic and anti-proliferative regulator, underlining the existence of a trade-off between innate immunity and growth during development., Competing Interests: FG, DH, DS, EM, KB No competing interests declared, (© 2018, Germani et al.)
- Published
- 2018
- Full Text
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36. Mutations in Bcl9 and Pygo genes cause congenital heart defects by tissue-specific perturbation of Wnt/β-catenin signaling.
- Author
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Cantù C, Felker A, Zimmerli D, Prummel KD, Cabello EM, Chiavacci E, Méndez-Acevedo KM, Kirchgeorg L, Burger S, Ripoll J, Valenta T, Hausmann G, Vilain N, Aguet M, Burger A, Panáková D, Basler K, and Mosimann C
- Subjects
- Adaptor Proteins, Signal Transducing, Animals, Heart embryology, Mice, Mutation, Myocardium metabolism, Zebrafish embryology, Zebrafish genetics, beta Catenin metabolism, Heart Defects, Congenital genetics, Intracellular Signaling Peptides and Proteins genetics, Transcription Factors genetics, Wnt Signaling Pathway, Zebrafish Proteins genetics
- Abstract
Bcl9 and Pygopus (Pygo) are obligate Wnt/β-catenin cofactors in Drosophila , yet their contribution to Wnt signaling during vertebrate development remains unresolved. Combining zebrafish and mouse genetics, we document a conserved, β-catenin-associated function for BCL9 and Pygo proteins during vertebrate heart development. Disrupting the β-catenin-BCL9-Pygo complex results in a broadly maintained canonical Wnt response yet perturbs heart development and proper expression of key cardiac regulators. Our work highlights BCL9 and Pygo as selective β-catenin cofactors in a subset of canonical Wnt responses during vertebrate development. Moreover, our results implicate alterations in BCL9 and BCL9L in human congenital heart defects., (© 2018 Cantù et al.; Published by Cold Spring Harbor Laboratory Press.)
- Published
- 2018
- Full Text
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37. Myocardial β-Catenin-BMP2 signaling promotes mesenchymal cell proliferation during endocardial cushion formation.
- Author
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Wang Y, Lu P, Wu B, Riascos-Bernal DF, Sibinga NES, Valenta T, Basler K, and Zhou B
- Subjects
- Animals, Cell Proliferation, Endocardial Cushions embryology, Endocardium metabolism, Mesoderm cytology, Mesoderm metabolism, Mice, Models, Biological, Paracrine Communication, Rats, Wnt Signaling Pathway, Bone Morphogenetic Protein 2 metabolism, Endocardial Cushions metabolism, Myocardium metabolism, Organogenesis, Signal Transduction, beta Catenin metabolism
- Abstract
Abnormal endocardial cushion formation is a major cause of congenital heart valve disease, which is a common birth defect with significant morbidity and mortality. Although β-catenin and BMP2 are two well-known regulators of endocardial cushion formation, their interaction in this process is largely unknown. Here, we report that deletion of β-catenin in myocardium results in formation of hypoplastic endocardial cushions accompanying a decrease of mesenchymal cell proliferation. Loss of β-catenin reduced Bmp2 expression in myocardium and SMAD signaling in cushion mesenchyme. Exogenous BMP2 recombinant proteins fully rescued the proliferation defect of mesenchymal cells in cultured heart explants from myocardial β-catenin knockout embryos. Using a canonical WNT signaling reporter mouse line, we showed that cushion myocardium exhibited high WNT/β-catenin activities during endocardial cushion growth. Selective disruption of the signaling function of β-catenin resulted in a cushion growth defect similar to that caused by the complete loss of β-catenin. Together, these observations demonstrate that myocardial β-catenin signaling function promotes mesenchymal cell proliferation and endocardial cushion expansion through inducing BMP signaling., (Copyright © 2018. Published by Elsevier Ltd.)
- Published
- 2018
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38. Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live Drosophila .
- Author
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Bischof J, Duffraisse M, Furger E, Ajuria L, Giraud G, Vanderperre S, Paul R, Björklund M, Ahr D, Ahmed AW, Spinelli L, Brun C, Basler K, and Merabet S
- Subjects
- Animals, Animals, Genetically Modified, Color, Drosophila embryology, Drosophila metabolism, Drosophila Proteins metabolism, Embryo, Nonmammalian embryology, Embryo, Nonmammalian metabolism, Fluorescence, Gene Expression Regulation, Developmental, Luminescent Proteins chemistry, Luminescent Proteins genetics, Luminescent Proteins metabolism, Microscopy, Fluorescence methods, Protein Binding, Transcription Factors metabolism, Drosophila genetics, Drosophila Proteins genetics, Gene Library, Protein Interaction Mapping methods, Transcription Factors genetics
- Abstract
Transcription factors achieve specificity by establishing intricate interaction networks that will change depending on the cell context. Capturing these interactions in live condition is however a challenging issue that requires sensitive and non-invasive methods., We present a set of fly lines, called 'multicolor BiFC library', which covers most of the Drosophila transcription factors for performing Bimolecular Fluorescence Complementation (BiFC). The multicolor BiFC library can be used to probe two different binary interactions simultaneously and is compatible for large-scale interaction screens. The library can also be coupled with established Drosophila genetic resources to analyze interactions in the developmentally relevant expression domain of each protein partner. We provide proof of principle experiments of these various applications, using Hox proteins in the live Drosophila embryo as a case study. Overall this novel collection of ready-to-use fly lines constitutes an unprecedented genetic toolbox for the identification and analysis of protein-protein interactions in vivo., Competing Interests: JB Involved in maintaining and distributing the fly lines via the not-for-profit FlyORF project. There are no other competing interests to declare. MD, EF, LA, GG, SV, RP, DA, AA, LS, CB, SM No competing interests declared, MB Involved in the development of the FlyORF resource. There are no other competing interests to declare. KB Konrad Basler: Involved in maintaining and distributing the fly lines via the not-for-profit FlyORF project. There are no other competing interests to declare., (© 2018, Bischof et al.)
- Published
- 2018
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39. EZH2-Mediated Primary Cilium Deconstruction Drives Metastatic Melanoma Formation.
- Author
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Zingg D, Debbache J, Peña-Hernández R, Antunes AT, Schaefer SM, Cheng PF, Zimmerli D, Haeusel J, Calçada RR, Tuncer E, Zhang Y, Bossart R, Wong KK, Basler K, Dummer R, Santoro R, Levesque MP, and Sommer L
- Subjects
- Animals, Cell Line, Tumor, Cell Transformation, Neoplastic genetics, Cell Transformation, Neoplastic metabolism, Cell Transformation, Neoplastic pathology, Cilia genetics, Cilia pathology, Enhancer of Zeste Homolog 2 Protein genetics, Female, GTP Phosphohydrolases genetics, Gene Expression Regulation, Neoplastic, HEK293 Cells, Humans, Lymphatic Metastasis, Male, Melanocytes pathology, Melanoma genetics, Melanoma secondary, Membrane Proteins genetics, Mice, Nude, Mice, Transgenic, Proto-Oncogene Proteins B-raf genetics, Skin Neoplasms genetics, Skin Neoplasms pathology, Wnt Signaling Pathway, beta Catenin genetics, beta Catenin metabolism, Cell Movement, Cell Proliferation, Cilia metabolism, Enhancer of Zeste Homolog 2 Protein metabolism, Melanocytes metabolism, Melanoma metabolism, Skin Neoplasms metabolism
- Abstract
Human melanomas frequently harbor amplifications of EZH2. However, the contribution of EZH2 to melanoma formation has remained elusive. Taking advantage of murine melanoma models, we show that EZH2 drives tumorigenesis from benign Braf
V600E - or NrasQ61K -expressing melanocytes by silencing of genes relevant for the integrity of the primary cilium, a signaling organelle projecting from the surface of vertebrate cells. Consequently, gain of EZH2 promotes loss of primary cilia in benign melanocytic lesions. In contrast, blockade of EZH2 activity evokes ciliogenesis and cilia-dependent growth inhibition in malignant melanoma. Finally, we demonstrate that loss of cilia enhances pro-tumorigenic WNT/β-catenin signaling, and is itself sufficient to drive metastatic melanoma in benign cells. Thus, primary cilia deconstruction is a key process in EZH2-driven melanomagenesis., (Copyright © 2018 Elsevier Inc. All rights reserved.)- Published
- 2018
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40. WNT ligands control initiation and progression of human papillomavirus-driven squamous cell carcinoma.
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Zimmerli D, Cecconi V, Valenta T, Hausmann G, Cantù C, Restivo G, Hafner J, Basler K, and van den Broek M
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- Acyltransferases antagonists & inhibitors, Animals, Carcinoma, Squamous Cell genetics, Carcinoma, Squamous Cell virology, Enzyme Inhibitors pharmacology, Gene Expression Profiling, Humans, Membrane Proteins antagonists & inhibitors, Mice, Neoplastic Stem Cells pathology, Papillomaviridae genetics, Pyrazines pharmacology, Pyridines pharmacology, Skin Neoplasms genetics, Skin Neoplasms virology, Stem Cell Niche physiology, Wnt Signaling Pathway genetics, Acyltransferases metabolism, Carcinoma, Squamous Cell pathology, Membrane Proteins metabolism, Papillomaviridae pathogenicity, Papillomavirus Infections pathology, Skin Neoplasms pathology, Wnt Proteins metabolism
- Abstract
Human papillomavirus (HPV)-driven cutaneous squamous cell carcinoma (cSCC) is the most common cancer in immunosuppressed patients. Despite indications suggesting that HPV promotes genomic instability during cSCC development, the molecular pathways underpinning HPV-driven cSCC development remain unknown. We compared the transcriptome of HPV-driven mouse cSCC with normal skin and observed higher amounts of transcripts for Porcupine and WNT ligands in cSCC, suggesting a role for WNT signaling in cSCC progression. We confirmed increased Porcupine expression in human cSCC samples. Blocking the secretion of WNT ligands by the Porcupine inhibitor LGK974 significantly diminished initiation and progression of HPV-driven cSCC. Administration of LGK974 to mice with established cSCC resulted in differentiation of cancer cells and significant reduction of the cancer stem cell compartment. Thus, WNT/β-catenin signaling is essential for HPV-driven cSCC initiation and progression as well as for maintaining the cancer stem cell niche. Interference with WNT secretion may thus represent a promising approach for therapeutic intervention.
- Published
- 2018
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41. GLI1-expressing mesenchymal cells form the essential Wnt-secreting niche for colon stem cells.
- Author
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Degirmenci B, Valenta T, Dimitrieva S, Hausmann G, and Basler K
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- Animals, Cell Self Renewal, Female, Intestine, Small cytology, Intestine, Small metabolism, Male, Mice, Stem Cells cytology, Wnt Signaling Pathway, Colon cytology, Mesenchymal Stem Cells cytology, Mesenchymal Stem Cells metabolism, Stem Cell Niche physiology, Stem Cells metabolism, Wnt Proteins metabolism, Zinc Finger Protein GLI1 metabolism
- Abstract
Wnt-β-catenin signalling plays a pivotal role in the homeostasis of the intestinal epithelium by promoting stem cell renewal
1,2 . In the small intestine, epithelial Paneth cells secrete Wnt ligands and thus adopt the function of the stem cell niche to maintain epithelial homeostasis3,4 . It is unclear which cells comprise the stem cell niche in the colon. Here we show that subepithelial mesenchymal GLI1-expressing cells form this essential niche. Blocking Wnt secretion from GLI1-expressing cells prevents colonic stem cell renewal in mice: the stem cells are lost and, as a consequence, the integrity of the colonic epithelium is corrupted, leading to death. GLI1-expressing cells also play an important role in the maintenance of the small intestine, where they serve as a reserve Wnt source that becomes critical when Wnt secretion from epithelial cells is prevented. Our data suggest a mechanism by which the stem cell niche is adjusted to meet the needs of the intestine via adaptive changes in the number of mesenchymal GLI1-expressing cells.- Published
- 2018
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42. A transcriptomics resource reveals a transcriptional transition during ordered sarcomere morphogenesis in flight muscle.
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Spletter ML, Barz C, Yeroslaviz A, Zhang X, Lemke SB, Bonnard A, Brunner E, Cardone G, Basler K, Habermann BH, and Schnorrer F
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- Animals, Gene Expression Regulation, Developmental, Muscle Development genetics, Principal Component Analysis, RNA, Messenger genetics, RNA, Messenger metabolism, Time Factors, Drosophila melanogaster genetics, Flight, Animal physiology, Morphogenesis, Muscles physiology, Sarcomeres metabolism, Transcriptome genetics
- Abstract
Muscles organise pseudo-crystalline arrays of actin, myosin and titin filaments to build force-producing sarcomeres. To study sarcomerogenesis, we have generated a transcriptomics resource of developing Drosophila flight muscles and identified 40 distinct expression profile clusters. Strikingly, most sarcomeric components group in two clusters, which are strongly induced after all myofibrils have been assembled, indicating a transcriptional transition during myofibrillogenesis. Following myofibril assembly, many short sarcomeres are added to each myofibril. Subsequently, all sarcomeres mature, reaching 1.5 µm diameter and 3.2 µm length and acquiring stretch-sensitivity. The efficient induction of the transcriptional transition during myofibrillogenesis, including the transcriptional boost of sarcomeric components, requires in part the transcriptional regulator Spalt major. As a consequence of Spalt knock-down, sarcomere maturation is defective and fibers fail to gain stretch-sensitivity. Together, this defines an ordered sarcomere morphogenesis process under precise transcriptional control - a concept that may also apply to vertebrate muscle or heart development., Competing Interests: MS, CB, AY, XZ, SL, AB, EB, GC, KB, BH, FS No competing interests declared, (© 2018, Spletter et al.)
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- 2018
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43. Wnt Ligands as a Part of the Stem Cell Niche in the Intestine and the Liver.
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Degirmenci B, Hausmann G, Valenta T, and Basler K
- Subjects
- Animals, Humans, Intestines cytology, Ligands, Liver cytology, Cell Differentiation, Intestines physiology, Liver physiology, Stem Cell Niche, Wnt Proteins metabolism, Wnt Signaling Pathway
- Abstract
The term "Wnt signaling" does not refer to one uniform signal transduction cascade. Instead, it describes the multiple discrete signals elicited by Wnt ligands following their interaction with distinct receptor complexes. The interaction of stem cells with niche cells is coordinated by the involvement of different signaling pathways, including Wnt signaling. The stem cell populations are highly sensitive to modulation of Wnt pathway activity. Wnt signaling is of paramount importance for stem cell self-renewal, survival, proliferation, differentiation, movement, and cell polarity. Aberrant activation of Wnt/β-catenin signaling is associated with the pathology of many types of cancer, such as colorectal cancer and hepatocellular carcinoma. Importantly, although often initiated by mutation(s) downstream of the Wnt-receptor complex, the progression of colorectal cancer still seems to be augmented by Wnt ligand-mediated signaling. This chapter focuses on the role of Wnt ligands in the intestine and the liver during homeostasis and cancer., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2018
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44. Spontaneous Otorrhagia after Laparoscopic Pelvic Surgery: A Report of Two Cases.
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Basler K, Malone A, Carmichael M, Hafez O, Padhya T, and Boyev KP
- Subjects
- Aged, Ear Diseases, Female, Hemorrhage therapy, Humans, Intraoperative Complications, Postoperative Complications, Ear Canal, Hemorrhage etiology, Laparoscopy adverse effects, Tympanic Membrane
- Abstract
Spontaneous otorrhagia following laparoscopic pelvic surgery is a complication that is rarely reported and incompletely understood. Few case reports have described this phenomenon, though its true incidence is unknown. It has been hypothesized that a combination of extreme patient positioning and abdominal insufflation is the contributing factor. There does not appear to be any untoward consequences and patients can be managed conservatively. We present two cases of spontaneous otorrhagia associated with laparoscopic pelvic surgery, which occurred over a 1-week period at our institution.
- Published
- 2017
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45. Pharmacological interventions in the Wnt pathway: inhibition of Wnt secretion versus disrupting the protein-protein interfaces of nuclear factors.
- Author
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Zimmerli D, Hausmann G, Cantù C, and Basler K
- Subjects
- Animals, Humans, Neoplasms metabolism, Protein Binding drug effects, Wnt Proteins metabolism, Neoplasms drug therapy, Wnt Proteins antagonists & inhibitors, Wnt Signaling Pathway drug effects
- Abstract
Mutations in components of the Wnt pathways are a frequent cause of many human diseases, particularly cancer. Despite the fact that a causative link between aberrant Wnt signalling and many types of human cancers was established more than a decade ago, no Wnt signalling inhibitors have made it into the clinic so far. One reason for this is that no pathway-specific kinase is known. Additionally, targeting the protein-protein interactions needed to transduce the signal has not met with success so far. Complicating the search for and use of inhibitors is the complexity of the cascades triggered by the Wnts and their paramount biological importance. Wnt/β-catenin signalling is involved in virtually all aspects of embryonic development and in the control of the homeostasis of adult tissues. Encouragingly, however, in recent years, first successes with Wnt-pathway inhibitors have been reported in mouse models of disease. In this review, we summarize possible roads to follow during the quest to pharmacologically modulate the Wnt signalling pathway in cancer., Linked Articles: This article is part of a themed section on WNT Signalling: Mechanisms and Therapeutic Opportunities. To view the other articles in this section visit http://onlinelibrary.wiley.com/doi/10.1111/bph.v174.24/issuetoc., (© 2017 The British Pharmacological Society.)
- Published
- 2017
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46. Challenging FRET-based E-Cadherin force measurements in Drosophila.
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Eder D, Basler K, and Aegerter CM
- Subjects
- Animals, Animals, Genetically Modified, Biomechanical Phenomena, Cell Movement physiology, Drosophila, Drosophila Proteins genetics, Drosophila Proteins metabolism, Salivary Glands embryology, Salivary Glands metabolism, Wings, Animal embryology, Wings, Animal metabolism, Cadherins metabolism, Fluorescence Resonance Energy Transfer methods
- Abstract
Mechanical forces play a critical role during embryonic development. Cellular and tissue wide forces direct cell migration, drive tissue morphogenesis and regulate organ growth. Despite the relevance of mechanics for these processes, our knowledge of the dynamics of mechanical forces in living tissues remains scarce. Recent studies have tried to address this problem with the development of tension sensors based on Förster resonance energy transfer (FRET). These sensors are integrated into force bearing proteins and allow the measurement of mechanical tensions on subcellular structures. Here, we developed such a FRET-based sensor to measure E-Cadherin tensions in different Drosophila tissues in and ex vivo. Similar to previous studies, we integrated the sensor module into E-cadherin. We assessed the sensitivity of the sensor by measuring dynamic, developmental processes and mechanical modifications in three Drosophila tissues: the wing imaginal disc, the amnioserosa cells and the migrating border cells. However, these assays revealed that the sensor is not functional to measure the magnitude of tensions occurring in any of the three tissues. Moreover, we encountered technical problems with the measurement of FRET, which might represent more general pitfalls with FRET sensors in living tissues. These insights will help future studies to better design and control mechano-sensing experiments.
- Published
- 2017
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47. Generation of genome-modified Drosophila cell lines using SwAP.
- Author
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Franz A, Brunner E, and Basler K
- Subjects
- Alleles, Animals, Base Sequence, Cell Line, DNA Primers genetics, Mutation, Sequence Homology, CRISPR-Cas Systems, DNA Primers chemistry, Drosophila genetics, Genetic Engineering methods, Genome, Insect, Single-Cell Analysis methods
- Abstract
The ease of generating genetically modified animals and cell lines has been markedly increased by the recent development of the versatile CRISPR/Cas9 tool. However, while the isolation of isogenic cell populations is usually straightforward for mammalian cell lines, the generation of clonal Drosophila cell lines has remained a longstanding challenge, hampered by the difficulty of getting Drosophila cells to grow at low densities. Here, we describe a highly efficient workflow to generate clonal Cas9-engineered Drosophila cell lines using a combination of cell pools, limiting dilution in conditioned medium and PCR with allele-specific primers, enabling the efficient selection of a clonal cell line with a suitable mutation profile. We validate the protocol by documenting the isolation, selection and verification of eight independently Cas9-edited armadillo mutant Drosophila cell lines. Our method provides a powerful and simple workflow that improves the utility of Drosophila cells for genetic studies with CRISPR/Cas9.
- Published
- 2017
- Full Text
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48. Combining Time-of-Flight Secondary Ion Mass Spectrometry Imaging Mass Spectrometry and CARS Microspectroscopy Reveals Lipid Patterns Reminiscent of Gene Expression Patterns in the Wing Imaginal Disc of Drosophila melanogaster.
- Author
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Marty F, Rago G, Smith DF, Gao X, Eijkel GB, MacAleese L, Bonn M, Brunner E, Basler K, and Heeren RMA
- Subjects
- Animals, Drosophila melanogaster anatomy & histology, Glycerides genetics, Imaginal Discs anatomy & histology, Spectrum Analysis, Raman, Time Factors, Wings, Animal anatomy & histology, Drosophila melanogaster genetics, Drosophila melanogaster growth & development, Gene Expression Profiling, Glycerides analysis, Imaginal Discs growth & development, Spectrometry, Mass, Secondary Ion, Wings, Animal growth & development
- Abstract
Using label-free ToF-SIMS imaging mass spectrometry, we generated a map of small molecules differentially expressed in the Drosophila wing imaginal disc. The distributions of these moieties were in line with gene expression patterns observed during wing imaginal disc development. Combining ToF-SIMS imaging and coherent anti-Stokes Raman spectroscopy (CARS) microspectroscopy allowed us to locally identify acylglycerols as the main constituents of the pattern differentiating the future body wall tissue from the wing blade tissue. The findings presented herein clearly demonstrate that lipid localization patterns are strongly correlated with a developmental gene expression. From this correlation, we hypothesize that lipids play a so far unrecognized role in organ development.
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- 2017
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49. Dpp controls growth and patterning in Drosophila wing precursors through distinct modes of action.
- Author
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Bosch PS, Ziukaite R, Alexandre C, Basler K, and Vincent JP
- Subjects
- Animals, Drosophila Proteins genetics, Gene Expression Regulation, Developmental, Gene Knockdown Techniques, Spatio-Temporal Analysis, Body Patterning, Drosophila embryology, Drosophila Proteins metabolism, Wings, Animal embryology
- Abstract
Dpp, a member of the BMP family, is a morphogen that specifies positional information in Drosophila wing precursors. In this tissue, Dpp expressed along the anterior-posterior boundary forms a concentration gradient that controls the expression domains of target genes, which in turn specify the position of wing veins. Dpp also promotes growth in this tissue. The relationship between the spatio-temporal profile of Dpp signalling and growth has been the subject of debate, which has intensified recently with the suggestion that the stripe of Dpp is dispensable for growth. With two independent conditional alleles of dpp, we find that the stripe of Dpp is essential for wing growth. We then show that this requirement, but not patterning, can be fulfilled by uniform, low level, Dpp expression. Thus, the stripe of Dpp ensures that signalling remains above a pro-growth threshold, while at the same time generating a gradient that patterns cell fates.
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- 2017
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50. Transforming growth factor-β-dependent Wnt secretion controls myofibroblast formation and myocardial fibrosis progression in experimental autoimmune myocarditis.
- Author
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Blyszczuk P, Müller-Edenborn B, Valenta T, Osto E, Stellato M, Behnke S, Glatz K, Basler K, Lüscher TF, Distler O, Eriksson U, and Kania G
- Subjects
- Animals, Benzeneacetamides pharmacology, Cell Differentiation physiology, Disease Progression, Fibrosis physiopathology, Humans, MAP Kinase Kinase Kinases metabolism, MAP Kinase Kinase Kinases physiology, Membrane Proteins metabolism, Mice, Inbred BALB C, Myofibroblasts physiology, Pyridines pharmacology, Signal Transduction physiology, Stem Cells physiology, TCF Transcription Factors metabolism, Ventricular Dysfunction physiopathology, Wnt-5a Protein metabolism, Wnt1 Protein metabolism, beta Catenin metabolism, Autoimmune Diseases etiology, Myocarditis etiology, Myocardium pathology, Transforming Growth Factor beta physiology, Wnt Proteins metabolism
- Abstract
Aims: Myocardial fibrosis critically contributes to cardiac dysfunction in inflammatory dilated cardiomyopathy (iDCM). Activation of transforming growth factor-β (TGF-β) signalling is a key-step in promoting tissue remodelling and fibrosis in iDCM. Downstream mechanisms controlling these processes, remain elusive., Methods and Results: Experimental autoimmune myocarditis (EAM) was induced in BALB/c mice with heart-specific antigen and adjuvant. Using heart-inflammatory precursors, as well as mouse and human cardiac fibroblasts, we demonstrated rapid secretion of Wnt proteins and activation of Wnt/β-catenin pathway in response to TGF-β signalling. Inactivation of extracellular Wnt with secreted Frizzled-related protein 2 (sFRP2) or inhibition of Wnt secretion with Wnt-C59 prevented TGF-β-mediated transformation of inflammatory precursors and cardiac fibroblasts into pathogenic myofibroblasts. Inhibition of T-cell factor (TCF)/β-catenin-mediated transcription with ICG-001 or genetic loss of β-catenin also prevented TGF-β-induced myofibroblasts formation. Furthermore, blocking of Smad-independent TGF-β-activated kinase 1 (TAK1) pathway completely abrogated TGF-β-induced Wnt secretion. Activation of Wnt pathway in the absence of TGF-β, however, failed to transform precursors into myofibroblasts. The critical role of Wnt axis for cardiac fibrosis in iDCM is also supported by elevated Wnt-1/Wnt-5a levels in human samples from hearts with myocarditis. Accordingly, and as an in vivo proof of principle, inhibition of Wnt secretion or TCF/β-catenin-mediated transcription abrogated the development of post-inflammatory fibrosis in EAM., Conclusion: We identified TAK1-mediated rapid Wnt protein secretion as a novel downstream key mechanism of TGF-β-mediated myofibroblast differentiation and myocardial fibrosis progression in human and mouse myocarditis. Thus, pharmacological targeting of Wnts might represent a promising therapeutic approach against iDCM in the future., (Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2016. For permissions please email: journals.permissions@oup.com.)
- Published
- 2017
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