49 results on '"Auffret, Alistair G."'
Search Results
2. Anthropogenic climate and land-use change drive short- and long-term biodiversity shifts across taxa
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Montràs-Janer, Teresa, Suggitt, Andrew J., Fox, Richard, Jönsson, Mari, Martay, Blaise, Roy, David B., Walker, Kevin J., and Auffret, Alistair G.
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- 2024
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3. Linking climate warming and land conversion to species’ range changes across Great Britain
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Suggitt, Andrew J., Wheatley, Christopher J., Aucott, Paula, Beale, Colin M., Fox, Richard, Hill, Jane K., Isaac, Nick J. B., Martay, Blaise, Southall, Humphrey, Thomas, Chris D., Walker, Kevin J., and Auffret, Alistair G.
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- 2023
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4. Author Correction: Anthropogenic climate and land-use change drive short- and long-term biodiversity shifts across taxa
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Montràs-Janer, Teresa, Suggitt, Andrew J., Fox, Richard, Jönsson, Mari, Martay, Blaise, Roy, David B., Walker, Kevin J., and Auffret, Alistair G.
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- 2024
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5. Climate warming has compounded plant responses to habitat conversion in northern Europe
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Auffret, Alistair G. and Svenning, Jens-Christian
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- 2022
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6. Traffic intensity and vegetation management affect flower‐visiting insects and their response to resources in road verges
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Horstmann, Svenja, primary, Auffret, Alistair G., additional, Herbertsson, Lina, additional, Klatt, Björn K., additional, Müller, Sophie, additional, and Öckinger, Erik, additional
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- 2024
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7. Traffic intensity and vegetation management affect flower‐visiting insects and their response to resources in road verges
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Horstmann, Svenja, Auffret, Alistair G., Herbertsson, Lina, Klatt, Björn K., Müller, Sophie, Öckinger, Erik, Horstmann, Svenja, Auffret, Alistair G., Herbertsson, Lina, Klatt, Björn K., Müller, Sophie, and Öckinger, Erik
- Abstract
Road verges can support high densities of flowers and could therefore provide new opportunities for the conservation of flower-visiting insects. One way of optimizing road verges for vascular plant diversity is to adjust mowing regimes, but to date it is unclear how this affects flower-visiting insects. Furthermore, for mobile organisms like wild bees and butterflies, there is a risk that the benefit of increased habitat quality in road verges is limited by the proximity to traffic, but this is poorly studied. In a crossed study design, we separated mowing time and frequency (early summer and autumn, or only late summer) from road verge habitat classification (valuable for biodiversity according to transport authority, or regular). We did so along a gradient of traffic intensity, to investigate if a mowing regime designed to enhance plant diversity can also benefit wild bees and butterflies, and if traffic limits the conservation potential of road verges. Road verges that were mown only in late summer had higher flower densities, and there was a positive relationship between flower density and wild bee abundance and species richness. Butterfly abundance and species richness only benefitted from a late summer mowing in valuable but not in regular road verges. Traffic intensity had a substantial negative impact on abundance and species richness of wild bees and butterflies. Higher traffic intensities limited the positive relationship between plant and butterfly species richness that we observed at lower traffic intensities. Increasing width of the road verges buffered negative effects of the traffic on wild bee as well as butterfly abundances, and on wild bee species richness. Synthesis and applications. Road verges can play a valuable role for the conservation of wild bees and butterflies, but there is a need to consider both traffic intensity and resource availability when implementing management strategies. To support wild bee and butterfly diversity, we recommend
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- 2024
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8. Soil seed bank richness, abundance and density across spatial scales and global biomes
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Auffret, Alistair G., primary, Ladouceur, Emma, additional, Haussmann, Natalie S., additional, Keil, Petr, additional, Daouti, Eirini, additional, Elumeeva, Tatiana G., additional, Kačergytė, Ineta, additional, Knape, Jonas, additional, Kotowska, Dorota, additional, Low, Matthew, additional, Onipchenko, Vladimir G., additional, Paquet, Matthieu, additional, Rubene, Diana, additional, and Plue, Jan, additional
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- 2023
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9. Land uplift creates important meadow habitat and a potential original niche for grassland species
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Auffret, Alistair G. and Cousins, Sara A. O.
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- 2018
10. Plant functional connectivity — integrating landscape structure and effective dispersal
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Auffret, Alistair G., Rico, Yessica, Bullock, James M., Hooftman, Pakeman, Robin J., Soons, Merel B., Suárez-Esteban, Alberto, Traveset, Anna, Wagner, Helene H., and Cousins, Sara A. O.
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- 2017
11. Spatial scale and specialization affect how biogeography and functional traits predict long-term patterns of community turnover
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Auffret, Alistair G., Aggemyr, Elsa, Plue, Jan, and Cousins, Sara A. O.
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- 2017
12. GalliForm, a database of Galliformes occurrence records from the Indo-Malay and Palaearctic, 1800–2008
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Boakes, Elizabeth H., Fuller, Richard A., Mace, Georgina M., Ding, Changqing, Ang, Tzo Tze, Auffret, Alistair G., Clark, Natalie E., Dunn, Jonathon, Gilbert, Jennifer, Golovnyuk, Viktor, Gupta, Garima, Irlich, Ulrike, Joachim, Emily, O’ Connor, Kim, Potapov, Eugene, Potapov, Roald, Schleicher, Judith, Stebbing, Sarah, Townshend, Terry, and McGowan, Philip J. K.
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- 2020
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13. Spatial scale matters for predicting plant invasions along roads.
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Kotowska, Dorota, Skórka, Piotr, Pärt, Tomas, Auffret, Alistair G., and Żmihorski, Michał
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PLANT invasions ,INTRODUCED species ,BIOLOGICAL invasions ,INTRODUCED plants ,INVASIVE plants ,SOCIAL impact - Abstract
Biological invasions threaten global biodiversity and can have severe economic and social impacts. The complexity of this problem challenges effective management of invasive alien species as the contribution of many factors involved in the invasion processes across different spatial scales is not well understood.Here, we identify the most important determinants associated with the occurrence of two invasive alien plants, the North American goldenrods (Solidago canadensis and S. gigantea), commonly found in agricultural landscapes of Europe. We used Google Street View images to perform a remote, large‐scale inventory of goldenrods along 1347 roadside transects across Poland. Using open access geospatial data and machine learning techniques, we investigated the relative role of nearly 50 variables potentially affecting the distribution of studied species at five spatial scales (from within 0.25 to 5 km of the studied locations).We found that the occurrence of goldenrods along roadsides was simultaneously associated with multiple drivers among which those related to human impacts, climate, soil properties and landscape structure were the most important, while local characteristics, such as road parameters or the presence of other alien plants were less influential. However, the relative contribution of different variables in predicting goldenrod distribution changed across spatial scales.Synthesis: Mechanisms underlying plant invasions are highly complex and a number of factors can jointly influence the outcomes of this process. However, since different invasion drivers operate at different spatial scales, some important associations may be overlooked when focusing on a single spatial context. Although associations were consistent in direction (positive or negative) across scales, their relative influence on goldenrod occurrence often changed. Socio‐economic factors were largely important at local scales, while the effect of landscape factors broadly increased with increasing spatial scale. We highlight that using multi‐scale approaches involving a wide range of variables may enable setting priorities for the management of invasive alien plants. [ABSTRACT FROM AUTHOR]
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- 2024
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14. Species accumulation in novel grassland habitats is linked to land cover history
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Horstmann, Svenja, primary, Auffret, Alistair G., additional, Dániel‐Ferreira, Juliana, additional, and Öckinger, Erik, additional
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- 2023
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15. More warm-adapted species in soil seed banks than in herb layer plant communities across Europe
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Auffret, Alistair G., Vangansbeke, Pieter, De Frenne, Pieter, Auestad, Inger, Basto, Sofia, Grandin, Ulf, Jacquemyn, Hans, Jakobsson, Anna, Kalamees, Rein, Koch, Marcus A., Marrs, Rob, Marteinsdottir, Bryndis, Wagner, Markus, Bekker, Renee M., Bruun, Hans Henrik, Decocq, Guillaume, Hermy, Martin, Jankowska-Blaszczuk, Malgorzata, Milberg, Per, Maren, Inger E., Pakeman, Robin J., Phoenix, Gareth K., Thompson, Ken, Van Calster, Hans, Vandvik, Vigdis, Plue, Jan, Auffret, Alistair G., Vangansbeke, Pieter, De Frenne, Pieter, Auestad, Inger, Basto, Sofia, Grandin, Ulf, Jacquemyn, Hans, Jakobsson, Anna, Kalamees, Rein, Koch, Marcus A., Marrs, Rob, Marteinsdottir, Bryndis, Wagner, Markus, Bekker, Renee M., Bruun, Hans Henrik, Decocq, Guillaume, Hermy, Martin, Jankowska-Blaszczuk, Malgorzata, Milberg, Per, Maren, Inger E., Pakeman, Robin J., Phoenix, Gareth K., Thompson, Ken, Van Calster, Hans, Vandvik, Vigdis, and Plue, Jan
- Abstract
Responses to climate change have often been found to lag behind the rate of warming that has occurred. In addition to dispersal limitation potentially restricting spread at leading range margins, the persistence of species in new and unsuitable conditions is thought to be responsible for apparent time-lags. Soil seed banks can allow plant communities to temporarily buffer unsuitable environmental conditions, but their potential to slow responses to long-term climate change is largely unknown. As local forest cover can also buffer the effects of a warming climate, it is important to understand how seed banks might interact with land cover to mediate community responses to climate change. We first related species-level seed bank persistence and distribution-derived climatic niches for 840 plant species. We then used a database of plant community data from grasslands, forests and intermediate successional habitats from across Europe to investigate relationships between seed banks and their corresponding herb layers in 2763 plots in the context of climate and land cover. We found that species from warmer climates and with broader distributions are more likely to have a higher seed bank persistence, resulting in seed banks that are composed of species with warmer and broader climatic distributions than their corresponding herb layers. This was consistent across our climatic extent, with larger differences (seed banks from even warmer climates relative to vegetation) found in grasslands. Synthesis. Seed banks have been shown to buffer plant communities through periods of environmental variability, and in a period of climate change might be expected to contain species reflecting past, cooler conditions. Here, we show that persistent seed banks often contain species with relatively warm climatic niches and those with wide climatic ranges. Although these patterns may not be primarily driven by species climatic adaptations, the prominence of such species in seed banks might s, Funding Agencies|H2020 European Research Council [757833]; Svenska Forskningsradet Formas [2015-1065, 2018-00961]; Vetenskapsradet [2020-04276]
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- 2023
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16. Author Correction: Super-regional land-use change and effects on the grassland specialist flora
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Auffret, Alistair G., Kimberley, Adam, Plue, Jan, and Waldén, Emelie
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- 2019
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17. More warm‐adapted species in soil seed banks than in herb layer plant communities across Europe
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Auffret, Alistair G., primary, Vangansbeke, Pieter, additional, De Frenne, Pieter, additional, Auestad, Inger, additional, Basto, Sofía, additional, Grandin, Ulf, additional, Jacquemyn, Hans, additional, Jakobsson, Anna, additional, Kalamees, Rein, additional, Koch, Marcus A., additional, Marrs, Rob, additional, Marteinsdóttir, Bryndís, additional, Wagner, Markus, additional, Bekker, Renée M., additional, Bruun, Hans Henrik, additional, Decocq, Guillaume, additional, Hermy, Martin, additional, Jankowska‐Błaszczuk, Małgorzata, additional, Milberg, Per, additional, Måren, Inger E., additional, Pakeman, Robin J., additional, Phoenix, Gareth K., additional, Thompson, Ken, additional, Van Calster, Hans, additional, Vandvik, Vigdis, additional, and Plue, Jan, additional
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- 2023
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18. Regional-scale land-cover change during the 20th century and its consequences for biodiversity
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Cousins, Sara A. O., Auffret, Alistair G., Lindgren, Jessica, and Tränk, Louise
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- 2015
19. The spatial and temporal components of functional connectivity in fragmented landscapes
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Auffret, Alistair G., Plue, Jan, and Cousins, Sara A. O.
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- 2015
20. A global database of soil seed bank richness, density, and abundance.
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Auffret, Alistair G., Ladouceur, Emma, Haussmann, Natalie S., Daouti, Eirini, Elumeeva, Tatiana G., Kačergytė, Ineta, Knape, Jonas, Kotowska, Dorota, Low, Matthew, Onipchenko, Vladimir G., Paquet, Matthieu, Rubene, Diana, and Plue, Jan
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SOIL seed banks , *AGRICULTURAL industries , *DATABASES , *SPECIES diversity , *RUSSIAN language - Abstract
A soil seed bank is the collective name for viable seeds that are stored naturally in the soil. At the species or population level, the ability to form a seed bank represents a strategy for (re)colonization following a disturbance or other change in the local environmental conditions. At the community level, seed banks are thought to buffer local diversity during periods of environmental change and are often studied in relation to the potential for passive habitat restoration. The role that seed banks play in plant population and community dynamics, as well as their importance in the agricultural sector, means that they have been widely studied in ecological research. This database is the result of a comprehensive literature search, including all seed bank studies from the Web of Science from which data could be extracted, as well as an additional search of the Russian language literature. The database contains information on the species richness, seed density, and/or seed abundance in 3096 records from at least 1929 locations across the world's seven continents, extracted from 1442 studies published between 1940 and 2020. Records are grouped into five broad habitat categories (aquatic, arable, forest, grassland—including shrubland—and wetland), including information relating to habitat degradation from, or restoration to other habitats (total 14 combinations). Sampling protocols were also extracted for each record, and the database was extensively checked for errors. The location of each record was then used to extract summary climate data and biome classification from external published databases. The database has several potential uses. The large geographical spread relative to many other global biodiversity datasets is relevant for investigating patterns of diversity in biogeographical or macroecological contexts. Habitat type and status (intact, degraded, and restored) can be used to provide insights for biodiversity conservation, while the potential effects of sampling method and effort can be used to inform optimized data collection for future seed bank studies. This database is released under the CC‐BY license. [ABSTRACT FROM AUTHOR]
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- 2024
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21. The geography of human-mediated dispersal
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Auffret, Alistair G., Berg, Johan, and Cousins, Sara A.O.
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- 2014
22. Super-regional land-use change and effects on the grassland specialist flora
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Auffret, Alistair G., Kimberley, Adam, Plue, Jan, and Waldén, Emelie
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- 2018
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23. Scale‐dependence of landscape heterogeneity effects on plant invasions
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Kotowska, Dorota, primary, Pärt, Tomas, additional, Skórka, Piotr, additional, Auffret, Alistair G., additional, and Żmihorski, Michał, additional
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- 2022
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24. Can field botany be effectively taught as a distance course? Experiences and reflections from the COVID-19 pandemic
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Auffret, Alistair G, primary, Ekholm, Adam, additional, Hämäläinen, Aino, additional, Jonsell, Mats, additional, Lehto, Carl, additional, Nordkvist, Michelle, additional, Öckinger, Erik, additional, Torstensson, Peter, additional, Viketoft, Maria, additional, and Thor, Göran, additional
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- 2021
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25. Seed dispersal by ungulates as an ecological filter: a trait-based meta-analysis
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Albert, Aurélie, Auffret, Alistair G., Cosyns, Eric, Cousins, Sara A. O., Dʼhondt, Bram, Eichberg, Carsten, Eycott, Amy E., Heinken, Thilo, Hoffmann, Maurice, Jaroszewicz, Bogdan, Malo, Juan E., Mårell, Anders, Mouissie, Maarten, Pakeman, Robin J., Picard, Mélanie, Plue, Jan, Poschlod, Peter, Provoost, Sam, Schulze, Kiowa Alraune, and Baltzinger, Christophe
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- 2015
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26. Historical floras reflect broad shifts in flowering phenology in response to a warming climate
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Auffret, Alistair G., primary
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- 2021
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27. Buffering effects of soil seed banks on plant community composition in response to land use and climate
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Plue, Jan, Van Calster, Hans, Auestad, Inger, Basto, Sofía, Bekker, Renée M., Bruun, Hans Henrik, Chevalier, Richard, Decocq, Guillaume, Grandin, Ulf, Hermy, Martin, Jacquemyn, Hans, Jakobsson, Anna, Jankowska‐Błaszczuk, Małgorzata, Kalamees, Rein, Koch, Marcus A., Marrs, Rob H., Marteinsdóttir, Bryndís, Milberg, Per, Måren, Inger E., Pakeman, Robin J., Phoenix, Gareth K., Thompson, Ken, Vandvik, Vigdis, Wagner, Markus, Auffret, Alistair G., Plue, Jan, Van Calster, Hans, Auestad, Inger, Basto, Sofía, Bekker, Renée M., Bruun, Hans Henrik, Chevalier, Richard, Decocq, Guillaume, Grandin, Ulf, Hermy, Martin, Jacquemyn, Hans, Jakobsson, Anna, Jankowska‐Błaszczuk, Małgorzata, Kalamees, Rein, Koch, Marcus A., Marrs, Rob H., Marteinsdóttir, Bryndís, Milberg, Per, Måren, Inger E., Pakeman, Robin J., Phoenix, Gareth K., Thompson, Ken, Vandvik, Vigdis, Wagner, Markus, and Auffret, Alistair G.
- Abstract
Aim: Climate and land use are key determinants of biodiversity, with past and ongoing changes posing serious threats to global ecosystems. Unlike most other organism groups, plant species can possess dormant life‐history stages such as soil seed banks, which may help plant communities to resist or at least postpone the detrimental impact of global changes. This study investigates the potential for soil seed banks to achieve this. Location: Europe. Time period: 1978–2014. Major taxa studied: Flowering plants. Methods: Using a space‐for‐time/warming approach, we study plant species richness and composition in the herb layer and the soil seed bank in 2,796 community plots from 54 datasets in managed grasslands, forests and intermediate, successional habitats across a climate gradient. Results: Soil seed banks held more species than the herb layer, being compositionally similar across habitats. Species richness was lower in forests and successional habitats compared to grasslands, with annual temperature range more important than mean annual temperature for determining richness. Climate and land‐use effects were generally less pronounced when plant community richness included seed bank species richness, while there was no clear effect of land use and climate on compositional similarity between the seed bank and the herb layer. Main conclusions: High seed bank diversity and compositional similarity between the herb layer and seed bank plant communities may provide a potentially important functional buffer against the impact of ongoing environmental changes on plant communities. This capacity could, however, be threatened by climate warming. Dormant life‐history stages can therefore be important sources of diversity in changing environments, potentially underpinning already observed time‐lags in plant community responses to global change. However, as soil seed banks themselves appear, albeit less, vulnerable to the same changes, their potential to buffer change can only b
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- 2021
28. Buffering effects of soil seed banks on plant community composition in response to land use and climate
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Plue, Jan, Van Calster, Hans, Auestad, Inger, Basto, Sofia, Bekker, Renée M., Bruun, Hans Henrik, Chevalier, Rchard, Decocq, Guillaume, Grandin, Ulf, Hermy, Martin, Jacquemyn, Hans, Jakobsson, Anna, Jankowska-Blaszczuk, Małgorzata, Kalamees, Rein, Koch, Marcus A., Marrs, Rob H., Marteinsdóttir, Bryndís, Milberg, Per, Måren, Inger E., Pakeman, Robin J., Phoenix, Gareth K., Thompson, Ken, Vandvik, Vigdis, Wagner, Markus, Auffret, Alistair. G., Plue, Jan, Van Calster, Hans, Auestad, Inger, Basto, Sofia, Bekker, Renée M., Bruun, Hans Henrik, Chevalier, Rchard, Decocq, Guillaume, Grandin, Ulf, Hermy, Martin, Jacquemyn, Hans, Jakobsson, Anna, Jankowska-Blaszczuk, Małgorzata, Kalamees, Rein, Koch, Marcus A., Marrs, Rob H., Marteinsdóttir, Bryndís, Milberg, Per, Måren, Inger E., Pakeman, Robin J., Phoenix, Gareth K., Thompson, Ken, Vandvik, Vigdis, Wagner, Markus, and Auffret, Alistair. G.
- Abstract
Aim Climate and land use are key determinants of biodiversity, with past and ongoing changes posing serious threats to global ecosystems. Unlike most other organism groups, plant species can possess dormant life‐history stages such as soil seed banks, which may help plant communities to resist or at least postpone the detrimental impact of global changes. This study investigates the potential for soil seed banks to achieve this. Location Europe. Time period 1978–2014. Major taxa studied Flowering plants Methods Using a space‐for‐time/warming approach, we study plant species richness and composition in the herb layer and the soil seed bank in 2,796 community plots from 54 datasets in managed grasslands, forests and intermediate, successional habitats across a climate gradient. Results Soil seed banks held more species than the herb layer, being compositionally similar across habitats. Species richness was lower in forests and successional habitats compared to grasslands, with annual temperature range more important than mean annual temperature for determining richness. Climate and land‐use effects were generally less pronounced when plant community richness included seed bank species richness, while there was no clear effect of land use and climate on compositional similarity between the seed bank and the herb layer.Main conclusionsHigh seed bank diversity and compositional similarity between the herb layer and seed bank plant communities may provide a potentially important functional buffer against the impact of ongoing environmental changes on plant communities. This capacity could, however, be threatened by climate warming. Dormant life‐history stages can therefore be important sources of diversity in changing environments, potentially underpinning already observed time‐lags in plant community responses to global change. However, as soil seed banks themselves appear, albeit less, vulnerable to the same changes, their potential to buffer change can only be temporar
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- 2020
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29. Improving scientific rigour in conservation evaluations and a plea deal for transparency on potential biases
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Josefsson, Jonas, Hiron, Matthew, Arlt, Debora, Auffret, Alistair G., Berg, Åke, Chevalier, Mathieu, Glimskär, Anders, Hartman, Göran, Kačergyte, Ineta, Klein, Julian, Knape, Jonas, Laugen, Ane T., Low, Matthew, Paquet, Matthieu, Pasanen-Mortensen, Marianne, Rosin, Zuzanna M., Rubene, Diana, Zmihorski, Michał, Pärt, Tomas, Josefsson, Jonas, Hiron, Matthew, Arlt, Debora, Auffret, Alistair G., Berg, Åke, Chevalier, Mathieu, Glimskär, Anders, Hartman, Göran, Kačergyte, Ineta, Klein, Julian, Knape, Jonas, Laugen, Ane T., Low, Matthew, Paquet, Matthieu, Pasanen-Mortensen, Marianne, Rosin, Zuzanna M., Rubene, Diana, Zmihorski, Michał, and Pärt, Tomas
- Abstract
The delivery of rigorous and unbiased evidence on the effects of interventions lay at the heart of the scientific method. Here we examine scientific papers evaluating agri-environment schemes, the principal instrument to mitigate farmland biodiversity declines worldwide. Despite previous warnings about rudimentary study designs in this field, we found that the majority of studies published between 2008 and 2017 still lack robust study designs to strictly evaluate intervention effects. Potential sources of bias that arise from the correlative nature are rarely mentioned, and results are still promoted by using a causal language. This lack of robust study designs likely results from poor integration of research and policy, while the erroneous use of causal language and an unwillingness to discuss bias may stem from publication pressures. We conclude that scientific reporting and discussion of study limitations in intervention research must improve and propose some practices toward this goal.
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- 2020
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30. European soil seed bank communities across a climate and land-cover gradient
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Plue, Jan, Auestad, Inger, Basto, Sofia, Bekker, Reneé M., Bruun, Hans Henrik, Chevalier, Richard, Decocq, Guillaume, Grandin, Ulf, Hermy, Martin, Jacquemyn, Hans, Jakobsson, Anna, Kalamees, Rein, Marrs, Rob H., Marteinsdóttir, Bryndis, Milberg, Per, Pakeman, Robin J., Phoenix, Gareth, Thompson, Ken, Vandvik, Vigdis, Wagner, Markus, Cousins, Sara A.O., Eriksson, Ove, Ghorbani, Jamshid, Jankowska-Błaszczuk, Małgorzata, Klanderud, Kari, Koch, Marcus A., Le Duc, Michael, Lee, Hyohymi, Meineri, Eric, McAllister, Hugh A., Måren, Inger E., Poschlod, Peter, Rosenburgh, Angus, Rydgren, Knut, Töpper, Joachim P., Auffret, Alistair G., Plue, Jan, Auestad, Inger, Basto, Sofia, Bekker, Reneé M., Bruun, Hans Henrik, Chevalier, Richard, Decocq, Guillaume, Grandin, Ulf, Hermy, Martin, Jacquemyn, Hans, Jakobsson, Anna, Kalamees, Rein, Marrs, Rob H., Marteinsdóttir, Bryndis, Milberg, Per, Pakeman, Robin J., Phoenix, Gareth, Thompson, Ken, Vandvik, Vigdis, Wagner, Markus, Cousins, Sara A.O., Eriksson, Ove, Ghorbani, Jamshid, Jankowska-Błaszczuk, Małgorzata, Klanderud, Kari, Koch, Marcus A., Le Duc, Michael, Lee, Hyohymi, Meineri, Eric, McAllister, Hugh A., Måren, Inger E., Poschlod, Peter, Rosenburgh, Angus, Rydgren, Knut, Töpper, Joachim P., and Auffret, Alistair G.
- Abstract
This is the data set used for the publication Buffering effects of soil seed banks on plant community composition in response to land use and climate, published in the journal Global Ecology and Biogeography. Aim. Climate and land use are key determinants of biodiversity, with past and ongoing changes posing serious threats to global ecosystems. Unlike most other organism groups, plant species can possess dormant life-history stages such as soil seed banks, which may help plant communities to resist or at least postpone the detrimental impact of global changes. This study investigates the potential for soil seed banks to achieve this. Location. Europe Time period. 1978 – 2014 Major taxa studied. Flowering plants Methods. Using a space-for-time/warming approach, we study plant species richness and composition in the herb layer and the soil seed bank in 2796 community plots from 54 datasets in managed grasslands, forests and intermediate, successional habitats across a climate gradient. Results. Soil seed banks held more species than the herb layer, being compositionally similar across habitats. Species richness was lower in forests and successional habitats compared to grasslands, with annual temperature range more important than mean annual temperature for determining richness. Climate and land use effects were generally less pronounced when plant community richness included seed bank species richness, while there was no clear effect of land use and climate on compositional similarity between the seed bank and the herb layer. Main conclusions. High seed bank diversity and compositional similarity between the herb layer and seed bank plant communities may provide a potentially important functional buffer against the impact of ongoing environmental changes on plant communities. This capacity could, however, be threatened by climate warming. Dormant life-history stages can therefore be important sources of diversity in changing environments, potentially underpinning al, FundingNatural Environment Research Council, Award: NE/D00036X/1Norges Forskningsråd, Award: 184912,73758/410,156325/530Svenska Forskningsrådet Formas, Award: 2015‐1065,2018‐00961VetenskapsrådetÖstersjöstiftelsen
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- 2020
31. Buffering effects of soil seed banks on plant community composition in response to land use and climate
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Plue, Jan, primary, Van Calster, Hans, additional, Auestad, Inger, additional, Basto, Sofía, additional, Bekker, Renée M., additional, Bruun, Hans Henrik, additional, Chevalier, Richard, additional, Decocq, Guillaume, additional, Grandin, Ulf, additional, Hermy, Martin, additional, Jacquemyn, Hans, additional, Jakobsson, Anna, additional, Jankowska‐Błaszczuk, Małgorzata, additional, Kalamees, Rein, additional, Koch, Marcus A., additional, Marrs, Rob H., additional, Marteinsdóttir, Bryndís, additional, Milberg, Per, additional, Måren, Inger E., additional, Pakeman, Robin J., additional, Phoenix, Gareth K., additional, Thompson, Ken, additional, Vandvik, Vigdis, additional, Wagner, Markus, additional, and Auffret, Alistair G., additional
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- 2020
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32. Improving scientific rigour in conservation evaluations and a plea deal for transparency on potential biases
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Josefsson, Jonas, primary, Hiron, Matthew, additional, Arlt, Debora, additional, Auffret, Alistair G., additional, Berg, Åke, additional, Chevalier, Mathieu, additional, Glimskär, Anders, additional, Hartman, Göran, additional, Kačergytė, Ineta, additional, Klein, Julian, additional, Knape, Jonas, additional, Laugen, Ane T., additional, Low, Matthew, additional, Paquet, Matthieu, additional, Pasanen‐Mortensen, Marianne, additional, Rosin, Zuzanna M., additional, Rubene, Diana, additional, Żmihorski, Michał, additional, and Pärt, Tomas, additional
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- 2020
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33. Roadside diversity in relation to age and surrounding source habitat: evidence for long time lags in valuable green infrastructure
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Auffret, Alistair G., primary and Lindgren, Evelina, additional
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- 2020
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34. Can field botany be effectively taught as a distance course? Experiences and reflections from the COVID-19 pandemic.
- Author
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Auffret, Alistair G, Ekholm, Adam, Hämäläinen, Aino, Jonsell, Mats, Lehto, Carl, Nordkvist, Michelle, Öckinger, Erik, Torstensson, Peter, Viketoft, Maria, and Thor, Göran
- Subjects
COVID-19 pandemic ,BOTANY ,EDUCATIONAL outcomes ,TEACHING aids ,NATURAL history ,COVID-19 - Abstract
The COVID-19 pandemic that started in 2020 forced a rapid change in university teaching, with large numbers of courses switching to distance learning with very little time for preparation. Courses involving many practical elements and field excursions required particular care if students were to fulfil planned learning outcomes. Here, we present our experiences in teaching field botany in 2020 and 2021. Using a range of methods and tools to introduce students to the subject, promote self-learning and reflection and give rapid and regular feedback, we were able to produce a course that allowed students to achieve the intended learning outcomes and that obtained similarly positive student evaluations to previous years. The course and its outcomes were further improved in 2021. We describe how we structured field botany as a distance course in order that we could give the best possible learning experience for the students. Finally, we reflect on how digital tools can aid teaching such subjects in the future, in a world where public knowledge of natural history is declining. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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- View/download PDF
35. Synergistic and antagonistic effects of land use and non‐native species on community responses to climate change
- Author
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Auffret, Alistair G. and Thomas, Chris
- Abstract
Climate change, land‐use change and introductions of non‐native species are key determinants of biodiversity change worldwide. However, the extent to which anthropogenic drivers of environmental change interact to affect biological communities is largely unknown, especially over longer time periods. Here, we show that plant community composition in 996 Swedish landscapes has consistently shifted to reflect the warmer and wetter climate that the region has experienced during the second half of the 20th century. Using community climatic indices, which reflect the average climatic associations of the species within each landscape at each time period, we found that species compositions in 74% of landscapes now have a higher representation of warm‐associated species than they did previously, while 84% of landscapes now host more species associated with higher levels of precipitation. In addition to a warmer and wetter climate, there have also been large shifts in land use across the region, while the fraction of non‐native species has increased in the majority of landscapes. Climatic warming at the landscape level appeared to favour the colonization of warm‐associated species, while also potentially driving losses in cool‐associated species. However, the resulting increases in community thermal means were apparently buffered by landscape simplification (reduction in habitat heterogeneity within landscapes) in the form of increased forest cover. Increases in non‐native species, which generally originate from warmer climates than Sweden, were a strong driver of community‐level warming. In terms of precipitation, both landscape simplification and increases in non‐natives appeared to favour species associated with drier climatic conditions, to some extent counteracting the climate‐driven shift towards wetter communities. Anthropogenic drivers can act both synergistically and antagonistically to determine trajectories of change in biological communities over time. Therefore, it is important to consider multiple drivers of global change when trying to understand, manage and predict biodiversity in the future.
- Published
- 2019
36. Graphical explanation of local-scale biodiversity sampling regime. from Land uplift creates important meadow habitat and a potential original niche for grassland species
- Author
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Auffret, Alistair G. and Cousins, Sara A. O.
- Abstract
Semi-natural grasslands have been severely affected by agricultural land-use change. However, the isostatic land adjustment following deglaciation in the northern hemisphere means that new land is continually being created in coastal areas. We modelled isostatic adjustment during the last 4000 years in a region of the Baltic coast to estimate the emergence of potential grassland habitat. We also compared the α and β diversity of existing managed and abandoned coastal meadows, and assessed their contribution to biodiversity at landscape scales. We estimated that half the 7866 km2 of emerging land had the potential to become coastal meadow habitat, which is an order of magnitude larger than the total area of all valuable semi-natural grassland in the study region today. The small area of managed coastal habitat remaining was found to have a disproportionate influence on the richness of threatened species at landscape scales, but our results also show that continued management is essential for the maintenance of grassland biodiversity. Our combination of approaches identifies uplifted coastal meadows as an additional original niche for grassland plant species, while highlighting that low-intensity disturbance through grassland management is essential for the maintenance of diversity at multiple scales.
- Published
- 2018
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37. Species richness and composition differ in response to landscape and biogeography
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Aggemyr, Elsa, Auffret, Alistair G., Jädergård, Love, and Cousins, Sarah A.O.
- Subjects
Physical Geography ,Ecology - Abstract
ContextUnderstanding how landscape patterns affect species diversity is of great importance in the fields of biogeography, landscape ecology and conservation planning, but despite the rapid advance in biodiversity analysis, investigations of spatial effects on biodiversity are still largely focused on species richness.ObjectivesWe wanted to know if and how species richness and species composition are differentially driven by the spatial measures dominating studies in landscape ecology and biogeography. As both measures require the same limited presence/absence information, it is important to choose an appropriate diversity measure, as differing results could have important consequences for interpreting ecological processes.MethodsWe recorded plant occurrences on 112 islands in the Baltic archipelago. Species richness and composition were calculated for each island, and the explanatory power of island area and habitat heterogeneity, distance to mainland and structural connectivity at three different landscape sizes were examined.ResultsA total of 354 different plant species were recorded. The influence of landscape variables differed depending on which diversity measure was used. Island area and structural connectivity determined plant species richness, while species composition revealed a more complex pattern, being influenced by island area, habitat heterogeneity and structural connectivity.ConclusionsAlthough both measures require the same basic input data, species composition can reveal more about the ecological processes affecting plant communities in fragmented landscapes than species richness alone. Therefore, we recommend that species community composition should be used as an additional standard measure of diversity for biogeography, landscape ecology and conservation planning.
- Published
- 2018
38. Åkerogräs – besvärliga men fascinerande, viktiga och trängda!
- Author
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SUNDBERG, SEBASTIAN, ANDERSSON, JAN Y., AUFFRET, ALISTAIR G., and MENEGAT, ALEXANDER
- Published
- 2021
39. Extinction risk from climate change is reduced by microclimatic buffering
- Author
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Suggitt, Andrew J., Wilson, Robert J., Isaac, Nick J. B., Beale, Colin M., Auffret, Alistair G., August, Tom, Bennie, Jonathan J., Crick, Humphrey Q. P., Duffield, Simon, Fox, Richard, Hopkins, John J., Macgregor, Nicholas A., Morecroft, Mike D., Walker, Kevin J., Maclean, Ilya M. D., Suggitt, Andrew J., Wilson, Robert J., Isaac, Nick J. B., Beale, Colin M., Auffret, Alistair G., August, Tom, Bennie, Jonathan J., Crick, Humphrey Q. P., Duffield, Simon, Fox, Richard, Hopkins, John J., Macgregor, Nicholas A., Morecroft, Mike D., Walker, Kevin J., and Maclean, Ilya M. D.
- Abstract
Protecting biodiversity against the impacts of climate change requires effective conservation strategies that safeguard species at risk of extinction(1). Microrefugia allowed populations to survive adverse climatic conditions in the past(2,3), but their potential to reduce extinction risk from anthropogenic warming is poorly understood(3-5), hindering our capacity to develop robust in situ measures to adapt conservation to climate change(6). Here, we show that microclimatic heterogeneity has strongly buffered species against regional extirpations linked to recent climate change. Using more than five million distribution records for 430 climate-threatened and range-declining species, population losses across England are found to be reduced in areas where topography generated greater variation in the microclimate. The buffering effect of topographic microclimates was strongest for those species adversely affected by warming and in areas that experienced the highest levels of warming: in such conditions, extirpation risk was reduced by 22% for plants and by 9% for insects. Our results indicate the critical role of topographic variation in creating microrefugia, and provide empirical evidence that microclimatic heterogeneity can substantially reduce extinction risk from climate change.
- Published
- 2018
- Full Text
- View/download PDF
40. Extinction risk from climate change is reduced by microclimatic buffering
- Author
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Natural Environment Research Council (UK), Suggitt, Andrew J., Wilson, Robert J., Isaac, Nick J. B., Beale, Colin M., Auffret, Alistair G., August, Tom, Bennie, Jonathan J., Crick, Humphrey Q. P., Duffield, Simon, Fox, Richard, Hopkins, John J., Macgregor, Nicholas A., Morecroft, Mike D., Walker, Kevin J., Maclean, Ilya M.D., Natural Environment Research Council (UK), Suggitt, Andrew J., Wilson, Robert J., Isaac, Nick J. B., Beale, Colin M., Auffret, Alistair G., August, Tom, Bennie, Jonathan J., Crick, Humphrey Q. P., Duffield, Simon, Fox, Richard, Hopkins, John J., Macgregor, Nicholas A., Morecroft, Mike D., Walker, Kevin J., and Maclean, Ilya M.D.
- Abstract
Protecting biodiversity against the impacts of climate change requires effective conservation strategies that safeguard species at risk of extinction1. Microrefugia allowed populations to survive adverse climatic conditions in the past2,3, but their potential to reduce extinction risk from anthropogenic warming is poorly understood3,4,5, hindering our capacity to develop robust in situ measures to adapt conservation to climate change6. Here, we show that microclimatic heterogeneity has strongly buffered species against regional extirpations linked to recent climate change. Using more than five million distribution records for 430 climate-threatened and range-declining species, population losses across England are found to be reduced in areas where topography generated greater variation in the microclimate. The buffering effect of topographic microclimates was strongest for those species adversely affected by warming and in areas that experienced the highest levels of warming: in such conditions, extirpation risk was reduced by 22% for plants and by 9% for insects. Our results indicate the critical role of topographic variation in creating microrefugia, and provide empirical evidence that microclimatic heterogeneity can substantially reduce extinction risk from climate change.
- Published
- 2018
41. Species richness and composition differ in response to landscape and biogeography
- Author
-
Aggemyr, Elsa, primary, Auffret, Alistair G., additional, Jädergård, Love, additional, and Cousins, Sara A. O., additional
- Published
- 2018
- Full Text
- View/download PDF
42. Extinction risk from climate change is reduced by microclimatic buffering
- Author
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Suggitt, Andrew J., primary, Wilson, Robert J., additional, Isaac, Nick J. B., additional, Beale, Colin M., additional, Auffret, Alistair G., additional, August, Tom, additional, Bennie, Jonathan J., additional, Crick, Humphrey Q. P., additional, Duffield, Simon, additional, Fox, Richard, additional, Hopkins, John J., additional, Macgregor, Nicholas A., additional, Morecroft, Mike D., additional, Walker, Kevin J., additional, and Maclean, Ilya M. D., additional
- Published
- 2018
- Full Text
- View/download PDF
43. HistMapR : Rapid digitization of historical land-use maps in R
- Author
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Auffret, Alistair G., Kimberley, Adam, Plue, Jan, Skånes, Helle, Jakobsson, Simon, Waldén, Emelie, Wennbom, Marika, Wood, Heather, Bullock, James M., Cousins, Sara A. O., Gartz, Mira, Hooftman, Danny A. P., Tränk, Louise, Auffret, Alistair G., Kimberley, Adam, Plue, Jan, Skånes, Helle, Jakobsson, Simon, Waldén, Emelie, Wennbom, Marika, Wood, Heather, Bullock, James M., Cousins, Sara A. O., Gartz, Mira, Hooftman, Danny A. P., and Tränk, Louise
- Abstract
Habitat destruction and degradation represent serious threats to biodiversity, and quantification of land-use change over time is important for understanding the consequences of these changes to organisms and ecosystem service provision. Comparing land use between maps from different time periods allows estimation of the magnitude of habitat change in an area. However, digitizing historical maps manually is time-consuming and analyses of change are usually carried out at small spatial extents or at low resolutions. HistMapR contains a number of functions that can be used to semi-automatically digitize historical land use according to a map's colours, as defined by the RGB bands of the raster image. We test the method on different historical land-use map series and compare results to manual digitizations. Digitization is fast, and agreement with manually digitized maps of around 80-90% meets common targets for image classification. We hope that the ability to quickly classify large areas of historical land use will promote the inclusion of land-use change into analyses of biodiversity, species distributions and ecosystem services.
- Published
- 2017
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- View/download PDF
44. Methodological bias in the seed bank flora holds significant implications for understanding seed bank community functions
- Author
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Plue, Jan, Colas, F., Auffret, Alistair G., Cousins, Sara A. O., Plue, Jan, Colas, F., Auffret, Alistair G., and Cousins, Sara A. O.
- Abstract
Persistent seed banks are a key plant regeneration strategy, buffering environmental variation to allow population and species persistence. Understanding seed bank functioning within herb layer dynamics is therefore important. However, rather than assessing emergence from the seed bank in herb layer gaps, most studies evaluate the seed bank functioning via a greenhouse census. We hypothesise that greenhouse data may not reflect seed bank-driven emergence in disturbance gaps due to methodological differences. Failure in detecting (specialist) species may then introduce methodological bias into the ecological interpretation of seed bank functions using greenhouse data. The persistent seed bank was surveyed in 40 semi-natural grassland plots across a fragmented landscape, quantifying seedling emergence in both the greenhouse and in disturbance gaps. Given the suspected interpretational bias, we tested whether each census uncovers similar seed bank responses to fragmentation. Seed bank characteristics were similar between censuses. Census type affected seed bank composition, with >25% of species retrieved better by either census type, dependent on functional traits including seed longevity, production and size. Habitat specialists emerged more in disturbance gaps than in the greenhouse, while the opposite was true for ruderal species. Both censuses uncovered fragmentation-induced seed bank patterns. Low surface area sampling, larger depth of sampling and germination conditions cause underrepresentation of the habitat-specialised part of the persistent seed bank flora during greenhouse censuses. Methodological bias introduced in the recorded seed bank data may consequently have significant implications for the ecological interpretation of seed bank community functions based on greenhouse data.
- Published
- 2017
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- View/download PDF
45. Plant functional connectivity – integrating landscape structure and effective dispersal
- Author
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Sub Ecology and Biodiversity, Ecology and Biodiversity, Auffret, Alistair G., Rico, Yessica, Bullock, James M., Hooftman, Danny A.P., Pakeman, Robin J., Soons, Merel B., Suárez-Esteban, Alberto, Traveset, Anna, Wagner, Helene H., Cousins, Sara A.O., Sub Ecology and Biodiversity, Ecology and Biodiversity, Auffret, Alistair G., Rico, Yessica, Bullock, James M., Hooftman, Danny A.P., Pakeman, Robin J., Soons, Merel B., Suárez-Esteban, Alberto, Traveset, Anna, Wagner, Helene H., and Cousins, Sara A.O.
- Published
- 2017
46. HistMapR: Rapid digitization of historical land‐use maps in R
- Author
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Auffret, Alistair G., primary, Kimberley, Adam, additional, Plue, Jan, additional, Skånes, Helle, additional, Jakobsson, Simon, additional, Waldén, Emelie, additional, Wennbom, Marika, additional, Wood, Heather, additional, Bullock, James M., additional, Cousins, Sara A.O., additional, Gartz, Mira, additional, Hooftman, Danny A.P., additional, and Tränk, Louise, additional
- Published
- 2017
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- View/download PDF
47. Spatial scale and specialization affect how biogeography and functional traits predict long‐term patterns of community turnover
- Author
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Auffret, Alistair G., primary, Aggemyr, Elsa, additional, Plue, Jan, additional, and Cousins, Sara A. O., additional
- Published
- 2016
- Full Text
- View/download PDF
48. GalliForm, a database of Galliformes occurrence records from the Indo-Malay and Palaearctic, 1800-2008
- Author
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Garima Gupta, Changqing Ding, Judith Schleicher, Richard A. Fuller, Philip J. K. McGowan, Viktor Golovnyuk, Elizabeth H. Boakes, Eugene Potapov, Alistair G. Auffret, Georgina M. Mace, Sarah Stebbing, Jonathon Dunn, Terry Townshend, Jennifer Gilbert, Natalie E. Clark, Ulrike M. Irlich, Emily Joachim, Tzo Tze Ang, Kim O’ Connor, Roald Potapov, Boakes, Elizabeth H [0000-0003-3609-4259], Fuller, Richard A [0000-0001-9468-9678], Mace, Georgina M [0000-0001-8965-5211], Auffret, Alistair G [0000-0002-4190-4423], Irlich, Ulrike [0000-0002-8317-7615], Potapov, Roald [0000-0003-4609-9889], Schleicher, Judith [0000-0001-7817-4295], Apollo - University of Cambridge Repository, Boakes, Elizabeth H. [0000-0003-3609-4259], Fuller, Richard A. [0000-0001-9468-9678], Mace, Georgina M. [0000-0001-8965-5211], and Auffret, Alistair G. [0000-0002-4190-4423]
- Subjects
0106 biological sciences ,Statistics and Probability ,Data Descriptor ,704/158/1144 ,Asia ,Databases, Factual ,Species distribution ,Biodiversity ,Climate change ,Geographic Mapping ,Library and Information Sciences ,computer.software_genre ,010603 evolutionary biology ,01 natural sciences ,Education ,Animals ,Land use, land-use change and forestry ,Galliformes ,lcsh:Science ,Macroecology ,Ecological modelling ,Database ,Conservation biology ,010604 marine biology & hydrobiology ,Field (geography) ,Computer Science Applications ,Europe ,Geography ,Taxon ,704/158/670 ,lcsh:Q ,Statistics, Probability and Uncertainty ,data-descriptor ,computer ,704/158/851 ,Animal Distribution ,704/158/672 ,Information Systems - Abstract
Historical as well as current species distribution data are needed to track changes in biodiversity. Species distribution data are found in a variety of sources, each of which has its own distinct bias toward certain taxa, time periods or places. We present GalliForm, a database that comprises 186687 galliform occurrence records linked to 118907 localities in Europe and Asia. Records were derived from museums, peer-reviewed and grey literature, unpublished field notes, diaries and correspondence, banding records, atlas records and online birding trip reports. We describe data collection processes, georeferencing methods and quality-control procedures. This database has underpinned several peer-reviewed studies, investigating spatial and temporal bias in biodiversity data, species’ geographic range changes and local extirpation patterns. In our rapidly changing world, an understanding of long-term change in species’ distributions is key to predicting future impacts of threatening processes such as land use change, over-exploitation of species and climate change. This database, its historical aspect in particular, provides a valuable source of information for further studies in macroecology and biodiversity conservation., Measurement(s) geographic location • Species • Occupancy Technology Type(s) georeferencing • digital curation Sample Characteristic - Organism Galliformes sp. Sample Characteristic - Location Palearctic Region • Indomalayan Region Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.12886931
- Published
- 2021
- Full Text
- View/download PDF
49. Synergistic and antagonistic effects of land use and non-native species on community responses to climate change.
- Author
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Auffret AG and Thomas CD
- Subjects
- Animals, Biodiversity, Birds, Ecosystem, Sweden, Climate Change, Introduced Species
- Abstract
Climate change, land-use change and introductions of non-native species are key determinants of biodiversity change worldwide. However, the extent to which anthropogenic drivers of environmental change interact to affect biological communities is largely unknown, especially over longer time periods. Here, we show that plant community composition in 996 Swedish landscapes has consistently shifted to reflect the warmer and wetter climate that the region has experienced during the second half of the 20th century. Using community climatic indices, which reflect the average climatic associations of the species within each landscape at each time period, we found that species compositions in 74% of landscapes now have a higher representation of warm-associated species than they did previously, while 84% of landscapes now host more species associated with higher levels of precipitation. In addition to a warmer and wetter climate, there have also been large shifts in land use across the region, while the fraction of non-native species has increased in the majority of landscapes. Climatic warming at the landscape level appeared to favour the colonization of warm-associated species, while also potentially driving losses in cool-associated species. However, the resulting increases in community thermal means were apparently buffered by landscape simplification (reduction in habitat heterogeneity within landscapes) in the form of increased forest cover. Increases in non-native species, which generally originate from warmer climates than Sweden, were a strong driver of community-level warming. In terms of precipitation, both landscape simplification and increases in non-natives appeared to favour species associated with drier climatic conditions, to some extent counteracting the climate-driven shift towards wetter communities. Anthropogenic drivers can act both synergistically and antagonistically to determine trajectories of change in biological communities over time. Therefore, it is important to consider multiple drivers of global change when trying to understand, manage and predict biodiversity in the future., (© 2019 John Wiley & Sons Ltd.)
- Published
- 2019
- Full Text
- View/download PDF
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