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More than 0.5 billion tons of late Permian bauxite overlies the karstic topography of the Maokou Formation of western Guangxi in China. Here, we provide new mineralogical, geochemical, Sr-Nd-Pb isotopic, and pyrite S isotope and trace element compositional data for the Pingguo bauxite deposit, aiming to further our understanding of the genesis of Permian bauxite. The Pingguo bauxite contains three distinct layers: a lower layer dominated by ferric clay or weathered iron ore, a middle layer of cryptocrystalline and oolitic bauxite ore, and an upper layer dominated by argillaceous bauxite. The bauxite ore is mainly diaspore, pyrite, chamosite, and anatase, whereas the argillaceous bauxite contains diaspore, kaolinite, pyrophyllite, pyrite, and anatase. Two types of pyrite have been identified within the bauxite: fine-grained and framboidal pyrite (Py1) occurring in aggregates and coarse-grained and euhedral pyrite (Py2). Py1 is enriched in trace elements and is thought to have a diagenetic origin, whereas Py2 is deficient in trace elements and is considered to have formed by later recrystallization. The S isotopic composition of pyrite (−34.11 to −18.91‰) and visible ovoid microorganisms within the bauxite provide evidences of microbial activity during bauxite formation. The Sr-Nd-Pb isotopic composition of the bauxite indicates that these ores were generated by the weathering of basalts belonging to the Emeishan Large Igneous Province (LIP) and limestones of the Maokou Formation. Microorganisms were likely to have enhanced the dissolution and weathering of the parent rock and facilitated the precipitation of diaspore under near-surface conditions. [ABSTRACT FROM AUTHOR]