8 results on '"Rasmussen, Tim"'
Search Results
2. How Functional Lipids Affect the Structure and Gating of Mechanosensitive MscS-like Channels.
- Author
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Flegler, Vanessa Judith, Rasmussen, Tim, and Böttcher, Bettina
- Subjects
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ION channels , *OSMOTIC pressure , *LIPIDS , *STRUCTURAL models , *PROTEIN-lipid interactions , *ESCHERICHIA coli - Abstract
The ability to cope with and adapt to changes in the environment is essential for all organisms. Osmotic pressure is a universal threat when environmental changes result in an imbalance of osmolytes inside and outside the cell which causes a deviation from the normal turgor. Cells have developed a potent system to deal with this stress in the form of mechanosensitive ion channels. Channel opening releases solutes from the cell and relieves the stress immediately. In bacteria, these channels directly sense the increased membrane tension caused by the enhanced turgor levels upon hypoosmotic shock. The mechanosensitive channel of small conductance, MscS, from Escherichia coli is one of the most extensively studied examples of mechanically stimulated channels. Different conformational states of this channel were obtained in various detergents and membrane mimetics, highlighting an intimate connection between the channel and its lipidic environment. Associated lipids occupy distinct locations and determine the conformational states of MscS. Not all these features are preserved in the larger MscS-like homologues. Recent structures of homologues from bacteria and plants identify common features and differences. This review discusses the current structural and functional models for MscS opening, as well as the influence of certain membrane characteristics on gating. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
3. Structure of Escherichia coli cytochrome bd-II type oxidase with bound aurachin D.
- Author
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Kägi, Jan, Grauel, Antonia, Rasmussen, Tim, Böttcher, Bettina, and Friedrich, Thorsten
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ESCHERICHIA coli , *CYTOCHROME oxidase , *CYTOCHROME c - Published
- 2022
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4. Concentration and composition dependent aggregation of Pluronic- and Poly-(2-oxazolin)-Efavirenz formulations in biorelevant media.
- Author
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Endres, Sebastian, Karaev, Emil, Hanio, Simon, Schlauersbach, Jonas, Kraft, Christian, Rasmussen, Tim, Luxenhofer, Robert, Böttcher, Bettina, Meinel, Lorenz, and Pöppler, Ann-Christin
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OVERHAUSER effect (Nuclear physics) , *INTESTINES , *DIFFUSION coefficients , *COLLOIDS - Abstract
[Display omitted] Many drugs and drug candidates are poorly water-soluble. Intestinal fluids play an important role in their solubilization. However, the interactions of intestinal fluids with polymer excipients, drugs and their formulations are not fully understood. Here, diffusion ordered spectroscopy (DOSY) and nuclear Overhauser effect spectroscopy (NOESY), complemented by cryo-TEM were employed to address this. Efavirenz (EFV) as model drug, the triblock copolymers Pluronic® F-127 (PF127) and poly(2-oxazoline) based pMeOx- b -pPrOzi- b -pMeOx (pOx/pOzi) and their respective formulations were studied in simulated fed-state intestinal fluid (FeSSIF). For the individual polymers, the bile interfering nature of PF127 was confirmed and pure pOx/pOzi was newly classified as non-interfering. A different and more complex behaviour was however observed if EFV was involved. PF127/EFV formulations in FeSSIF showed concentration dependent aggregation with separate colloids at low formulation concentrations, a merging of individual particles at the solubility limit of EFV in FeSSIF and joint aggregates above this concentration. In the case of pOx/pOzi/EFV formulations, coincident diffusion coefficients for pOx/pOzi, lipids and EFV indicate joint aggregates across the studied concentration range. This demonstrates that separate evaluation of polymers and drugs in biorelevant media is not sufficient and their mixtures need to be studied to learn about concentration and composition dependent behaviour. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
5. Mechanosensitive channel gating by delipidation.
- Author
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Flegler, Vanessa Judith, Rasmussen, Akiko, Borbil, Karina, Boten, Lea, Hsuan-Ai Chen, Deinlein, Hanna, Halang, Julia, Hellmanzik, Kristin, Löffler, Jessica, Schmidt, Vanessa, Makbul, Cihan, Kraft, Christian, Hedrich, Rainer, Rasmussen, Tim, and Böttcher, Bettina
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PROTEIN-lipid interactions , *MALTOSE , *LIPIDS , *ETHYLENE glycol , *COMMERCIAL products - Abstract
The mechanosensitive channel of small conductance (MscS) protects bacteria against hypoosmotic shock. It can sense the tension in the surrounding membrane and releases solutes if the pressure in the cell is getting too high. The membrane contacts MscS at sensor paddles, but lipids also leave the membrane and move along grooves between the paddles to reside as far as 15 Å away from the membrane in hydrophobic pockets. One sensing model suggests that a higher tension pulls lipids from the grooves back to the membrane, which triggers gating. However, it is still unclear to what degree this model accounts for sensing and what contribution the direct interaction of the membrane with the channel has. Here, we show that MscS opens when it is sufficiently delipidated by incubation with the detergent dodecyl-β-maltoside or the branched detergent lauryl maltose neopentyl glycol. After addition of detergent-solubilized lipids, it closes again. These results support the model that lipid extrusion causes gating: Lipids are slowly removed from the grooves and pockets by the incubation with detergent, which triggers opening. Addition of lipids in micelles allows lipids to migrate back into the pockets, which closes the channel even in the absence of a membrane. Based on the distribution of the aliphatic chains in the open and closed conformation, we propose that during gating, lipids leave the complex on the cytosolic leaflet at the height of highest lateral tension, while on the periplasmic side, lipids flow into gaps, which open between transmembrane helices. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
6. The MscS-like channel YnaI has a gating mechanism based on flexible pore helices.
- Author
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Flegler, Vanessa Judith, Akiko Rasmussen, Rao, Shanlin, Na Wu, Zenobi, Renato, Sansom, Mark S. P., Hedrich, Rainer, Rasmussen, Tim, and Böttcher, Bettina
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ELECTRON cryomicroscopy , *MALEIC acid , *ESCHERICHIA coli , *OSMOREGULATION , *WETTING - Abstract
The mechanosensitive channel of small conductance (MscS) is the prototype of an evolutionarily diversified large family that finetunes osmoregulation but is likely to fulfill additional functions. Escherichia coli has six osmoprotective paralogs with different numbers of transmembrane helices. These helices are important for gating and sensing in MscS but the role of the additional helices in the paralogs is not understood. The medium-sized channel YnaI was extracted and delivered in native nanodiscs in closed-like and open-like conformations using the copolymer diisobutylene/maleic acid (DIBMA) for structural studies. Here we show by electron cryomicroscopy that YnaI has an extended sensor paddle that during gating relocates relative to the pore concomitant with bending of a GGxGG motif in the pore helices. YnaI is the only one of the six paralogs that has this GGxGG motif allowing the sensor paddle to move outward. Access to the pore is through a vestibule on the cytosolic side that is fenestrated by side portals. In YnaI, these portals are obstructed by aromatic side chains but are still fully hydrated and thus support conductance. For comparison with large-sized channels, we determined the structure of YbiO, which showed larger portals and a wider pore with no GGxGG motif. Further in silico comparison of MscS, YnaI, and YbiO highlighted differences in the hydrophobicity and wettability of their pores and vestibule interiors. Thus, MscS-like channels of different sizes have a common core architecture but show different gating mechanisms and fine-tuned conductive properties. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
7. The Cryptococcus neoformans Titan cell is an inducible and regulated morphotype underlying pathogenesis.
- Author
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Dambuza, Ivy M., Drake, Thomas, Chapuis, Ambre, Brown, Gordon D., Yuecel, Raif, MacCallum, Donna M., Correia, Joao, Ballou, Elizabeth R., Zhou, Xin, Taylor-Smith, Leanne, May, Robin C., Jaspars, Marcel, LeGrave, Nathalie, Rasmussen, Tim, Fisher, Matthew C., Bicanic, Tihana, and Harrison, Thomas S.
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CRYPTOCOCCUS neoformans , *FUNGAL cytology , *IN vitro studies , *YEAST fungi genetics , *PATHOGENIC fungi , *CELL transformation , *LUNG infections - Abstract
Fungal cells change shape in response to environmental stimuli, and these morphogenic transitions drive pathogenesis and niche adaptation. For example, dimorphic fungi switch between yeast and hyphae in response to changing temperature. The basidiomycete Cryptococcus neoformans undergoes an unusual morphogenetic transition in the host lung from haploid yeast to large, highly polyploid cells termed Titan cells. Titan cells influence fungal interaction with host cells, including through increased drug resistance, altered cell size, and altered Pathogen Associated Molecular Pattern exposure. Despite the important role these cells play in pathogenesis, understanding the environmental stimuli that drive the morphological transition, and the molecular mechanisms underlying their unique biology, has been hampered by the lack of a reproducible in vitro induction system. Here we demonstrate reproducible in vitro Titan cell induction in response to environmental stimuli consistent with the host lung. In vitro Titan cells exhibit all the properties of in vivo generated Titan cells, the current gold standard, including altered capsule, cell wall, size, high mother cell ploidy, and aneuploid progeny. We identify the bacterial peptidoglycan subunit Muramyl Dipeptide as a serum compound associated with shift in cell size and ploidy, and demonstrate the capacity of bronchial lavage fluid and bacterial co-culture to induce Titanisation. Additionally, we demonstrate the capacity of our assay to identify established (cAMP/PKA) and previously undescribed (USV101) regulators of Titanisation in vitro. Finally, we investigate the Titanisation capacity of clinical isolates and their impact on disease outcome. Together, these findings provide new insight into the environmental stimuli and molecular mechanisms underlying the yeast-to-Titan transition and establish an essential in vitro model for the future characterization of this important morphotype. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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8. The Structure of YnaI Implies Structural and Mechanistic Conservation in the MscS Family of Mechanosensitive Channels.
- Author
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Böttcher, Bettina, Prazak, Vojtech, Rasmussen, Akiko, Black, Susan S., and Rasmussen, Tim
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MOLECULAR structure , *ELECTRON cryomicroscopy , *MEMBRANE proteins , *PROTEIN-lipid interactions , *FLUORESCENCE , *ESCHERICHIA coli - Abstract
Summary Mechanosensitive channels protect bacteria against lysis caused by a sudden drop in osmolarity in their surroundings. Besides the channel of large conductance (MscL) and small conductance (MscS), Escherichia coli has five additional paralogs of MscS that are functional and widespread in the bacterial kingdom. Here, we present the structure of YnaI by cryo-electron microscopy to a resolution of 13 Å. While the cytosolic vestibule is structurally similar to that in MscS, additional density is seen in the transmembrane (TM) region consistent with the presence of two additional TM helices predicted for YnaI. The location of this density suggests that the extra TM helices are tilted, which could induce local membrane curvature extending the tension-sensing paddles seen in MscS. Off-center lipid-accessible cavities are seen that resemble gaps between the sensor paddles in MscS. The conservation of the tapered shape and the cavities in YnaI suggest a mechanism similar to that of MscS. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
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