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East Junggar is an important part of the Central Asia Orogenic Belt and has developed a multi‐epoch and multi‐type metallogenic system. Yundukala is a recently discovered large intrusion‐related Au–Cu–Co deposit. The No. 1 main mineralization zone mainly occurs in the contact area between fine‐grained diorite and basalt. Massive and vein mineralization have developed there, but the ore‐bearing stratum, ore‐bearing intrusive rocks, and metallogenic ages are not clear. Zircon SHRIMP U–Pb dating of the porphyritic diorite and fine‐grained diorite yields ages of 416.1 ± 3.9 Ma and 411.1 ± 7.5 Ma, respectively. The dioritoid intruded into the ore‐bearing stratum, indicating that this formation is part of the Early Palaeozoic strata rather than the Middle Devonian Beishan Formation. The Re–Os isochron age of the chalcopyrite in the massive mineralization is 402.6 ± 5.2 Ma; thus, the massive mineralization is related to fine‐grained diorite and formed in the Early Devonian. Six sulphides and four sulphides from the vein mineralization yield Re–Os isochron ages of 352.8 ± 1.8 Ma and 354 ± 23 Ma, respectively, and the limited vein mineralization was formed during 353–354 Ma. The massive and vein mineralizations in the Yundukala deposit were formed in the Early Devonian and Early Carboniferous. [ABSTRACT FROM AUTHOR]