72 results
Search Results
2. Ecological connectivity research in urban areas.
- Author
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LaPoint, Scott, Balkenhol, Niko, Hale, James, Sadler, Jonathan, Ree, Rodney, and Evans, Karl
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CITIES & towns ,ECOLOGY ,ECOSYSTEM dynamics ,ECOSYSTEM management ,BIOTIC communities - Abstract
The successful movement of individuals is fundamental to life. Facilitating these movements by promoting ecological connectivity has become a central theme in ecology and conservation. Urban areas contain more than half of the world's human population, and their potential to support biodiversity and to connect their citizens to nature is increasingly recognized. Promoting ecological connectivity within these areas is essential to reaching this potential. However, our current understanding of ecological connectivity within urban areas appears limited., We reviewed the published scientific literature to assess the state-of-the-art of ecological connectivity research in urban areas, summarized trends in study attributes and highlighted knowledge gaps., We found 174 papers that investigated ecological connectivity within urban areas. These papers addressed either structural (48) or functional connectivity (111), and some addressed both (15), but contained substantial geographic and taxonomic biases. These papers rarely defined the aspect of connectivity they were investigating and objective descriptions of the local urban context were uncommon. Formulated hypotheses or a priori predictions were typically unstated and many papers used suboptimal study designs and methods., We suggest future studies explicitly consider and quantify the landscape within their analyses and make greater use of available and rapidly developing tools and methods for measuring functional connectivity (e.g. biotelemetry or landscape genetics). We also highlight the need for studies to clearly define how the terms ' urban' and ' connectivity' have been applied., Knowledge gaps in ecological connectivity in urban areas remain, partly because the field is still in its infancy and partly because we must better capitalize on the state-of-the-art technological and analytical techniques that are increasingly available. Well-designed studies that employed high-resolution data and powerful analytical techniques highlight our abilities to quantify ecological connectivity in urban areas. These studies are exemplary, setting the standards for future research to facilitate data-driven and evidence-based biodiversity-friendly infrastructure planning in urban areas. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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3. The nature of science: The fundamental role of natural history in ecology, evolution, conservation, and education.
- Author
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Nanglu, Karma, de Carle, Danielle, Cullen, Thomas M., Anderson, Erika B., Arif, Suchinta, Castañeda, Rowshyra A., Chang, Lucy M., Iwama, Rafael Eiji, Fellin, Erica, Manglicmot, Regine Claire, Massey, Melanie D., and Astudillo‐Clavijo, Viviana
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NATURAL history ,NATURAL history museums ,BACKGROUND radiation ,TRADITIONAL knowledge ,HISTORY education ,ECOLOGY ,NATURE conservation ,INDIGENOUS children - Abstract
There is a contemporary trend in many major research institutions to de‐emphasize the importance of natural history education in favor of theoretical, laboratory, or simulation‐based research programs. This may take the form of removing biodiversity and field courses from the curriculum and the sometimes subtle maligning of natural history research as a "lesser" branch of science. Additional threats include massive funding cuts to natural history museums and the maintenance of their collections, the extirpation of taxonomists across disciplines, and a critical under‐appreciation of the role that natural history data (and other forms of observational data, including Indigenous knowledge) play in the scientific process. In this paper, we demonstrate that natural history knowledge is integral to any competitive science program through a comprehensive review of the ways in which they continue to shape modern theory and the public perception of science. We do so by reviewing how natural history research has guided the disciplines of ecology, evolution, and conservation and how natural history data are crucial for effective education programs and public policy. We underscore these insights with contemporary case studies, including: how understanding the dynamics of evolutionary radiation relies on natural history data; methods for extracting novel data from museum specimens; insights provided by multi‐decade natural history programs; and how natural history is the most logical venue for creating an informed and scientifically literate society. We conclude with recommendations aimed at students, university faculty, and administrators for integrating and supporting natural history in their mandates. Fundamentally, we are all interested in understanding the natural world, but we can often fall into the habit of abstracting our research away from its natural contexts and complexities. Doing so risks losing sight of entire vistas of new questions and insights in favor of an over‐emphasis on simulated or overly controlled studies. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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4. A disciplinary divide in the framing of urbanization's environmental impacts.
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Armstrong, John H., Nisi, Anna C., and Millard‐Ball, Adam
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URBAN biodiversity ,URBANIZATION ,URBAN research ,URBAN growth ,URBAN planning ,LAND settlement patterns - Abstract
We identify a disciplinary divide in how the environmental impacts of urbanization are presented in ecology and urban planning journals. We analyzed the sentiments expressed in 202,900 journal articles and found that articles in ecology journals discuss urbanization three times more negatively relative to urban planning journals. Articles in both disciplines identified the negative local impacts of urban growth on biodiversity, habitat, and other ecological outcomes. However, urban planning research also considered the positive global‐scale benefits of cities in enabling more efficient settlement patterns that reduce greenhouse gas emissions and energy consumption. These diverging perspectives are likely due to the different scales and scopes of the two disciplines, but also because of different counterfactuals: the alternative to urbanization might be car‐dependent exurbs, or simply no new development within the focal study area. Interdisciplinary collaborations may provide a path to reconcile the different perspectives and boost sustainability. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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5. The nominal group technique in ecology & conservation: Application and challenges.
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Hugé, Jean and Mukherjee, Nibedita
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CONSERVATION & restoration ,ECOLOGY ,BIODIVERSITY ,ENVIRONMENTAL databases ,STAKEHOLDERS - Abstract
Abstract: The nominal group technique (NGT) is a qualitative method to elicit judgement from stakeholders. This paper reviews its application in the field of ecology and conservation. We aim to identify patterns in methodological variants, topics covered, scope, advantages and limitations of the technique. Although still not widely used, NGT has been used in ecology and conservation to achieve four main goals: to support biodiversity management, to identify stakeholder preferences and attitudes, to prioritize in capacity‐building exercises and to explore novel concepts. Most NGT studies have been applied at local level. NGT is quite flexible and has been used in combination with a range of techniques (surveys, with the Delphi method and with multi‐criteria analysis, as well as with the collection of ecological data). The amalgamation of individual and collective reflection and the coproduction of knowledge among participants in NGT allows for a depolarizing approach to the study and management of conservation issues. [ABSTRACT FROM AUTHOR]
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- 2018
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6. Flux towers in the sky: global ecology from space.
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Schimel, David and Schneider, Fabian D.
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ECOLOGY ,BIOMASS burning ,FLUX (Energy) ,REMOTE sensing ,SKY ,FOREST productivity - Abstract
Summary: Global ecology – the study of the interactions among the Earth's ecosystems, land, atmosphere and oceans – depends crucially on global observations: this paper focuses on space‐based observations of global terrestrial ecosystems. Early global ecology relied on an extrapolation of detailed site‐level observations, using models of increasing complexity. Modern global ecology has been enabled largely by vegetation indices (greenness) from operational space‐based imagery but current capabilities greatly expand scientific possibilities. New observations from spacecraft in orbit allowed an estimation of gross carbon fluxes, photosynthesis, biomass burning, evapotranspiration and biomass, to create virtual eddy covariance sites in the sky. Planned missions will reveal the dimensions of the diversity of life itself. These observations will improve our understanding of the global productivity and carbon storage, land use, carbon cycle−climate feedback, diversity−productivity relationships and enable improved climate forecasts. Advances in remote sensing challenge ecologists to relate information organised by biome and species to new data arrayed by pixels and develop theory to address previously unobserved scales. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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7. Profile.
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van der Heijden, Marcel
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ENVIRONMENTAL sciences ,ENVIRONMENTAL education ,BIODIVERSITY ,ECOLOGY - Abstract
An interview with Marcel van der Heijden , the head of the Plant–Soil Interactions Group at the Swiss Federal Research Institute Agroscope in Zurich, Switzerland and a professor in Mycorrhizal Ecology at Utrecht University in the Netherlands, is presented. He mentions things that motivated him and other factors that have influenced his decision to pursue a career in research.
- Published
- 2018
8. Carolina critters: a collection of camera‐trap data from wildlife surveys across North Carolina.
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Lasky, Monica, Parsons, Arielle W., Schuttler, Stephanie G., Hess, George, Sutherland, Ron, Kalies, Liz, Clark, Staci, Olfenbuttel, Colleen, Matthews, Jessie, Clark, James S., Siminitz, Jordan, Davis, George, Shaw, Jonathan, Dukes, Casey, Hill, Jacob, and Kays, Roland
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ZOOLOGICAL surveys ,ANIMAL populations ,BIRD populations ,INFORMATION-seeking behavior ,ANIMAL species ,BIG data ,ACQUISITION of data - Abstract
Camera trap surveys are useful to understand animal species population trends, distribution, habitat preference, behavior, community dynamics, periods of activity, and species associations with environmental conditions. This information is ecologically important, because many species play important roles in local ecosystems as predators, herbivores, seed dispersers, and disease vectors. Additionally, many of the larger wildlife species detected by camera traps are economically important through hunting, trapping, or ecotourism. Here we present a data set of camera‐trap surveys from 6,043 locations across all 100 counties of North Carolina, USA from 2009 to 2019. These data come from 26 survey initiatives and contain 215,108 records of 36 mammal species and three species of terrestrial birds. This large data set increases the geographical distribution data for these 39 mammal and bird species by >500% over what is available for North Carolina in the Global Biodiversity Information Facility (GBIF). These data can be used to conduct inquiries about species, populations, communities, or ecosystems, and to produce useful information on wildlife behavior, distribution, and interactions. There are no copyright restrictions. Please cite this paper when using the data for publication. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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9. New spatial and temporal perspectives on the assembly of biotas and communities. Special issue: International Biogeography Society, 6th biennial International Conference.
- Author
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Svenning, Jens‐Christian
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CONFERENCES & conventions ,BIOGEOGRAPHY ,BIOLOGICAL evolution ,ECOLOGY ,ECOSYSTEMS ,CONSERVATION biology ,BIODIVERSITY - Abstract
The International Biogeography Society's biennial conferences are renown for being highly interdisciplinary and inspiring meetings. Biogeography is by its nature a holistic and interdisciplinary field and the conferences bring together biologists from a broad range of fields, e.g. experimental ecologists, historical biogeographers, evolutionary biologists, ecological modelers, conservation biologists, and paleobiologists, and covering essentially all types of organisms and ecosystems. The different backgrounds and perspectives combined with shared interests in terms of the basic research questions offer fertile grounds for developing new ideas. This was also the case for the 6th International Conference of the International Biogeography Society took place in Miami, Florida in January 2013. Ecography provided economic support, acting as a sponsor. In addition, Ecography was the officially designated journal for publishing some of the many exciting talks and posters presented at the conference. All of the papers in this special issue of Ecography arose from the IBS conference and reflect its combined high diversity in backgrounds and perspectives and high congruence in research questions. The papers have all been subject to external peer review, subsequent revision, and final editorial decisions of acceptance or rejection. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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10. A unified framework to investigate and interpret hybrid and allopolyploid biodiversity across biological scales.
- Author
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Krieg, Christopher P.
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PLANT diversity ,ECOLOGICAL niche ,PLANT hybridization ,VASCULAR plants ,BIODIVERSITY - Abstract
Premise: Hybridization and polyploidization are common in vascular plants and important drivers of biodiversity by facilitating speciation and ecological diversification. A primary limitation to making broad synthetic discoveries in hybrid and allopolyploid biodiversity research is the absence of a standardized framework to compare data across studies and biological scales. Methods: Here, I present a new quantitative framework to investigate and interpret patterns in hybrid and allopolyploid biology called the divergence index (DI). The DI framework produces standardized data that are comparable across studies and variables. To show how the DI framework can be used to synthesize data, I analyzed published biochemical, physiological, and ecological trait data of hybrids and allopolyploids. I also apply key ecological and evolutionary concepts in hybrid and polyploid biology to translate nominal outcomes, including transgression, intermediacy, expansion, and contraction, in continuous DI space. Results: Biochemical, physiological, ecological, and evolutionary data can all be analyzed, visualized, and interpreted in the DI framework. The DI framework is particularly suited to standardize and compare variables with very different scales. When using the DI framework to understand niche divergence, a metric of niche overlap can be used to complement insights to centroid and breadth changes. Discussion: The DI framework is an accessible framework for hybrid and allopolyploid biology and represents a flexible and intuitive tool that can be used to reconcile outstanding problems in plant biodiversity research. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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11. SPECIES: A platform for the exploration of ecological data.
- Author
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Stephens, Christopher R., Sierra‐Alcocer, Raúl, González‐Salazar, Constantino, Barrios, Juan M., Salazar Carrillo, Juan Carlos, Robredo Ezquivelzeta, Everardo, and Callejo Canal, Enrique
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ECOLOGY ,ABIOTIC environment ,BIOTIC communities ,BIODIVERSITY ,ECOLOGICAL niche - Abstract
The modeling of ecological data that include both abiotic and biotic factors is fundamental to our understanding of ecosystems. Repositories of biodiversity data, such as GBIF, iDigBio, Atlas of Living Australia, and SNIB (Mexico's National System of Biodiversity Information), contain a great deal of information that can lead to knowledge discovery about ecosystems. However, there is a lack of tools with which to efficiently extract such knowledge. In this paper, we present SPECIES, an open, web‐based platform designed to extract implicit information contained in large scale sets of ecological data. SPECIES is based on a tested methodology, wherein the correlations of variables of arbitrary type and spatial resolution, both biotic and abiotic, discrete and continuous, may be explored from both niche and network perspectives. In distinction to other modeling systems, SPECIES is a full stack exploratory tool that integrates the three basic components: data (which is incrementally growing), a statistical modeling and analysis engine, and an interactive visualization front end. Combined, these components provide a powerful tool that may guide ecologists toward new insights. SPECIES is optimized to support fast hypothesis prototyping and testing, analyzing thousands of biotic and abiotic variables, and presenting descriptive results to the user at different levels of detail. SPECIES is an open‐access platform available online (http://species.conabio.gob.mx), that is, powerful, flexible, and easy to use. It allows for the exploration and incorporation of ecological data and its subsequent integration into predictive models for both potential ecological niche and geographic distribution. It also provides an ecosystemic, network‐based analysis that may guide the researcher in identifying relations between different biota, such as the relation between disease vectors and potential disease hosts. SPECIES, an open web‐based platform designed for the exploratory analysis of large‐scale ecological datasets. SPECIES provides two perspectives: one based on ecological niche and geographic distribution modeling, and the other on ecological networks. SPECIES is optimized to support fast hypotheses prototyping and testing, analyzing thousands of biotic and abiotic variables and presenting descriptive results to the user at different levels of detail. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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12. Open access solutions for biodiversity journals: Do not replace one problem with another.
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Peterson, A. Townsend, Anderson, Robert P., Beger, Maria, Bolliger, Janine, Brotons, Lluís, Burridge, Christopher P., Cobos, Marlon E., Cuervo‐Robayo, Angela P., Di Minin, Enrico, Diez, Jeffrey, Elith, Jane, Embling, Clare B., Escobar, Luis E., Essl, Franz, Feeley, Kenneth J., Hawkes, Lucy, Jiménez‐García, Daniel, Jimenez, Laura, Green, David M., and Knop, Eva
- Subjects
BIODIVERSITY ,BIOGEOGRAPHY ,ECOLOGY ,BUSINESS models ,SCIENCE journalism - Published
- 2019
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13. Automated synthesis of biodiversity knowledge requires better tools and standardised research output.
- Author
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Cornford, Richard, Millard, Joseph, González‐Suárez, Manuela, Freeman, Robin, and Johnson, Thomas Frederick
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DATA mining ,BIODIVERSITY ,TEXT mining ,MACHINE learning - Abstract
As the impact of anthropogenic activity on the environment has grown, research into biodiversity change and associated threats has also accelerated. Synthesising this vast literature is important for understanding the drivers of biodiversity change and identifying those actions that will mitigate further ecological losses. However, keeping pace with an ever‐increasing publication rate presents a substantial challenge to efficient syntheses, an issue which could be partly addressed by increasing levels of automation in the synthesis pipeline. Here, we evaluate the potential for automated tools to extract ecologically important information from the abstracts of articles compiled in the Living Planet Database. Specifically, we focused on extracting key information on taxonomy (studied species names), geographic location and estimated population trend, assessing the accuracy of automated versus manual information extraction, the potential for automated tools to introduce biases into syntheses, and evaluating if synthesising abstracts was enough to capture the key information from the full article. Taxonomic and geographic extraction tools performed reasonably well, although information on studied species was sometimes limited in the abstract (compared to the main text) preventing fast extraction. In contrast, extraction of trends was less successful, highlighting the challenges involved in automating information extraction from abstracts, such as deficiencies in the algorithms, linguistic complexity associated with ecological findings, and limited information when compared to the main text. In light of these results, we cautiously advocate for a wider use of automated taxonomic and geographic parsing tools for ecological synthesis. Additionally, to further the use of automated synthesis within ecology, we recommend a dual approach: development of improved computational tools to reduce biases; and enhanced protocols for abstracts (and associated metadata) to ensure key information is included in a format that facilitates machine‐readability. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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14. Contemplating the future: Acting now on long-term monitoring to answer 2050's questions.
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Lindenmayer, David B., Burns, Emma L., Tennant, Philip, Dickman, Chris R., Green, Peter T., Keith, David A., Metcalfe, Daniel J., Russell‐Smith, Jeremy, Wardle, Glenda M., Williams, Dick, Bossard, Karl, deLacey, Claire, Hanigan, Ivan, Bull, C. Michael, Gillespie, Graeme, Hobbs, Richard J., Krebs, Charles J., Likens, Gene E., Porter, John, and Vardon, Michael
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ENVIRONMENTAL management ,ECOSYSTEMS ,BIODIVERSITY ,PERENNIALS ,SOCIAL processes ,ECOLOGY - Abstract
In 2050, which aspects of ecosystem change will we regret not having measured? Long-term monitoring plays a crucial part in managing Australia's natural environment because time is a key factor underpinning changes in ecosystems. It is critical to start measuring key attributes of ecosystems - and the human and natural process affecting them - now, so that we can track the trajectory of change over time. This will facilitate informed choices about how to manage ecological changes (including interventions where they are required) and promote better understanding by 2050 of how particular ecosystems have been shaped over time. There will be considerable value in building on existing long-term monitoring programmes because this can add significantly to the temporal depth of information. The economic and social processes driving change in ecosystems are not identical in all ecosystems, so much of what is monitored (and the means by which it is monitored) will most likely target specific ecosystems or groups of ecosystems. To best understand the effects of ecosystem-specific threats and drivers, monitoring also will need to address the economic and social factors underpinning ecosystem-specific change. Therefore, robust assessments of the state of Australia's environment will be best achieved by reporting on the ecological performance of a representative sample of ecosystems over time. Political, policy and financial support to implement appropriate ecosystem-specific monitoring is a perennial problem. We suggest that the value of ecological monitoring will be demonstrable, when plot-based monitoring data make a unique and crucial contribution to Australia's ability to produce environmental accounts, environmental reports (e.g. the State of the Environment, State of the Forests) and to fulfilling reporting obligations under international agreements, such as the Convention on Biological Diversity. This paper suggests what must be done to meet Australia's ecological information needs by 2050. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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15. Unifying macroecology and macroevolution to answer fundamental questions about biodiversity.
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McGill, Brian J., Chase, Jonathan M., Hortal, Joaquín, Overcast, Isaac, Rominger, Andrew J., Rosindell, James, Borges, Paulo A. V., Emerson, Brent C., Etienne, Rampal, Hickerson, Michael J., Mahler, D. Luke, Massol, Francois, McGaughran, Angela, Neves, Pedro, Parent, Christine, Patiño, Jairo, Ruffley, Megan, Wagner, Catherine E., Gillespie, Rosemary, and Algar, Adam
- Subjects
MACROEVOLUTION ,BIODIVERSITY ,MACROECOLOGY ,ECOLOGY ,TWENTIETH century ,QUESTIONING - Abstract
The study of biodiversity started as a single unified field that spanned both ecology and evolution and both macro and micro phenomena. But over the 20th century, major trends drove ecology and evolution apart and pushed an emphasis towards the micro perspective in both disciplines. Macroecology and macroevolution re‐emerged as self‐consciously distinct fields in the 1970s and 1980s, but they remain largely separated from each other. Here, we argue that despite the challenges, it is worth working to combine macroecology and macroevolution. We present 25 fundamental questions about biodiversity that are answerable only with a mixture of the views and tools of both macroecology and macroevolution. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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16. Fish and flow management in the Murray–Darling Basin: Directions for research.
- Author
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Koehn, John D., Balcombe, Stephen R., and Zampatti, Brenton P.
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NATURAL resources management ,INFORMATION sharing ,DECISION making ,ECOLOGY ,BIODIVERSITY - Abstract
Summary: Effective natural resource management requires knowledge exchange between researchers and managers to support evidence‐based decision‐making. To achieve this, there is a need to align research with management and policy needs. This project aimed to identify the flow‐related ecological knowledge needs for freshwater fish to better inform environmental water management in the Murray–Darling Basin, south‐eastern Australia. Our major objective was to provide an up‐to‐date assessment of scientific research and integrate this with the knowledge requirements of relevant managers to guide future research. We reviewed the contemporary scientific literature and engaged managers specifically responsible for delivering flows for fish outcomes via a questionnaire and workshop. Research on fishes of the MDB has generally evolved from single locations and/or times to larger spatio‐temporal scales, including multiple sites, rivers and catchments. There has also been a trend from single life stage studies to incorporation of multiple life stages and population processes. There remain, however, significant deficiencies in knowledge for most native species, many of which are threatened. Four agreed key knowledge gaps were derived from the literature review and managers' suggestions: (i) population dynamics, (ii) movement, dispersal and connectivity, (iii) survival and recruitment to adults and (iv) recruitment drivers. To inform policy and management, managers desired timely advice, based on robust research and monitoring. Fish species of most relevance to managers were those highly regarded by community stakeholders and whose life histories and population dynamics are potentially influenced by flow. Populations of these mostly large‐bodied, angling species (e.g. Murray Cod, Golden Perch and Silver Perch) have declined, often due to river regulation and, in conjunction with managers' priorities, are relevant candidates for research to support the management of flow to rehabilitate fish populations in the MDB. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
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17. Amphibian traits database: A global database on morphological traits of amphibians.
- Author
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Huang, Na, Sun, Xinyuan, Song, Yanfang, Yuan, Zhiyong, and Zhou, Weiwei
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DATABASES ,AMPHIBIANS ,SALAMANDERS ,ANURA ,DEMOGRAPHIC change - Abstract
Motivation: Amphibians are a diverse vertebrate group with more than 8,000 species, which is an important part of major terrestrial and freshwater ecosystems. Unfortunately, amphibians are experiencing a worldwide population decline. Trait information is important for understanding the causes of endangerment. Additionally, such information is essential for ecological and evolutionary studies using trait‐based approaches. However, such data are scarcer for amphibians than for any other terrestrial vertebrate groups. To fill this gap, we collected morphological traits of global amphibians available from the literature and compiled a database to facilitate future studies. Main types of variables contained: Forty‐two morphological traits of Anura, 27 morphological traits of Caudata and 37 morphological traits of Gymnophiona. Spatial location and grain: Global. Major taxa: Amphibia. Level of measurement: Species. Software format:.csv. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
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18. Analysing corporate forest disclosure: How does business value biodiversity?
- Author
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Anthony, Samuel Jack and Morrison‐Saunders, Angus
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BIODIVERSITY ,ENDANGERED species ,BUSINESS planning ,REPUTATION ,FOREST biodiversity - Abstract
Corporations are failing to account for their impact on biodiversity despite accelerating extinctions. The value of biodiversity to business can be explained by an environmental philosophy spectrum, where perspectives range from anthropocentric (humans are prioritised) to ecocentric (all life is equal), made up of paradigms and values linked to biodiversity protection. We explore the biodiversity values conveyed by the 40 largest corporations responding to the CDP Forest Questionnaire using 28 specific yes/no criteria aligned with the environmental philosophy spectrum. Strong anthropocentric perspectives focused on economic contribution dominated, conveying a desire to protect company reputation, thereby legitimising operations. Corporations seemingly only protect biodiversity that hold material benefits for humans. Some biocentric/ecocentric perspectives were conveyed in terms of extinction risk and sometimes intrinsic value. This could be a response to the accelerating global biodiversity crisis, offering hope corporations can protect all forms of biodiversity and could evidence ecocentric leadership informing business strategy. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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19. Messy Communities: The Established Researcher.
- Author
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Srivastava, Diane S.
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ECOLOGY ,ECOLOGISTS ,BIOGEOGRAPHY ,BIODIVERSITY - Abstract
The article offers information on the theories of community ecology presented by ecologists. It offers information on John Lawton, author who published the notion of ecological thinking in his work. It mentions that according to the Unified Neutral Theory of Biodiversity and Biogeography, understanding the difference between species is important in knowing community dynamics.
- Published
- 2018
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20. Widespread short‐term persistence of frog species after the 2019–2020 bushfires in eastern Australia revealed by citizen science.
- Author
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Rowley, Jodi J. L., Callaghan, Corey T., and Cornwell, William K.
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WILDFIRES ,FROG populations ,BIODIVERSITY ,CLIMATE change ,CITIZEN science - Abstract
Fires change ecosystem composition and influence species extinction risk, yet information on the impact of fire on biodiversity is scant. The bushfires in southeastern Australia during the summer of 2019/20 were unprecedented in their extent and intensity, and postfire management decisions have been hindered by a lack of knowledge of the impact of fires on biodiversity. We examine the short‐term persistence of frog species across southeastern Australia after these fires using records of calling frogs from the national citizen science project FrogID. We demonstrate widespread short‐term persistence of frog species. Sixty‐six frog species were detected in the firegrounds before the fire, and within 125 days postfire, 45 of these were detected. All 33 frog species with more than five records that were detected in the months of December–March prefire were detected postfire. While the short‐term postfire persistence of so many frog species is a positive result, the population‐level and longer‐term consequences of the fires remain unknown, as does the ability of frogs to persist with the changing fire regimes predicted as a consequence of global climate change. We illustrate the value of citizen science in collecting large‐scale and rapid observations in response to increasing anthropogenically‐driven ecological events. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
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21. adiv : An r package to analyse biodiversity in ecology.
- Author
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Pavoine, Sandrine and Goslee, Sarah
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BIODIVERSITY ,ECOLOGY ,PACKAGING ,BIOTIC communities - Abstract
R is an open‐source programming environment for statistical computing and graphics structured by numerous contributed packages. The current packages used for biodiversity research focus on limited, particular aspects of biodiversity. Most packages focus on the number and abundance of species.I present an r package named adiv that provides additional methods to measure and analyse biodiversity. adiv contains approaches to quantify species‐based, trait‐based (functional) and phylogenetic diversity (a) within communities (α diversity), (b) between communities (β diversity) and (c) to partition it over space and time (α, β and γ levels of diversity). Partitioning approaches allow evaluating whether the levels of α and β diversity could have been obtained by chance. Moreover, groups of biological entities (e.g. species of the same clade or with similar biological characteristics) that drive each level of diversity (α, β and γ) can be identified via ordination analyses.Although the package focuses on interspecific diversity in its current state, the developed approaches can also be applied to analyse intraspecific diversity or, at another level, ecosystem diversity. More generally, the functions can be applied in any discipline interested in the concept of diversity, such as economics or linguistics. Indeed, all available approaches can be easily applied at other scales and to other disciplines provided that the data have the required format: a matrix of abundance or presence/absence data of some entities in some collections and information on the differences between the entities.adiv aims to complement existing r packages to provide scientists with a wide variety of diversity indices, as each index reflects a very specific facet of biodiversity. adiv will grow in the future to integrate as many validated approaches for biodiversity analysis as possible, not yet available in r. As it includes both traditional and recent viewpoints on how biodiversity should be evaluated, adiv offers a promising platform where methods to analyse biodiversity can be developed and compared in terms of their statistical behaviour and biological relevance. Applications of the most relevant tools for a given study aim will eventually improve research on human‐driven variations in biodiversity. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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22. Tectonic evolution of the Tethyan region created the Eurasian extratropical biodiversity hotspots: tracing Pireneitega spiders' diversification history.
- Author
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Zhao, Zhe, Shao, Lili, Li, Fengyuan, Zhang, Xiaoqing, and Li, Shuqiang
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TETHYS (Paleogeography) ,AGELENIDAE ,GEOLOGIC hot spots ,BIODIVERSITY ,OROGENIC belts ,SPECIES diversity ,HISTORY of urban planning - Abstract
The withdrawal of the Tethys Sea and the formation of the Alpine‐Himalayan orogenic belt profoundly impacted the distribution and composition of terrestrial biota in Eurasia. However, studies that have explicitly addressed the potential links between the series of tectonic activities in the Tethyan region and the formation of extratropical biodiversity hotspots in the Alpine‐Himalayan belt are rare. Spiders in the genus Pireneitega (Agelenidae) are found throughout Eurasia and show high species richness in these hotspots. Thus, Pireneitega spiders may serve as a model group to shed light on how past tectonic events shaped Eurasian hotspots. To reconstruct the spatial and temporal evolution of Pireneitega spp., we conducted an integrative historical biogeographical analysis using thousands of novel DNA sequences and five novel transcriptome sequences from different species. Species distribution modelling based on complete geographical distribution information was used to assess the ecological preferences and the potential ecological interchangeability of Pireneitega species. Our study suggests that the rapid expansion of Pireneitega in Eurasia benefitted from regression of the Tethys Sea in the early Oligocene. Most Pireneitega species are distributed allopatrically, but in similar niches. The diversification of Pireneitega species relied on invading numerous new isolated habitats created by the uplift of Alpine‐Himalayan mountains during the Miocene (wet valley model). These results imply that the formation of Alpine‐Himalayan hotspots was driven by the series of tectonic events in the Tethyan region during the Oligocene–Miocene. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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23. Toward spatio‐temporal delineation of positive interactions in ecology.
- Author
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Tumolo, Benjamin B., Calle, Leonardo, Anderson, Heidi E., Briggs, Michelle A., Carlson, Sam, MacDonald, Michael J., Reinert, J. Holden, and Albertson, Lindsey K.
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HABITAT modification ,ECOLOGY ,CONSERVATION & restoration ,FORECASTING ,ECOSYSTEMS - Abstract
Given unprecedented rates of biodiversity loss, there is an urgency to better understand the ecological consequences of interactions among organisms that may lost or altered. Positive interactions among organisms of the same or different species that directly or indirectly improve performance of at least one participant can structure populations and communities and control ecosystem process. However, we are still in need of synthetic approaches to better understand how positive interactions scale spatio‐temporally across a range of taxa and ecosystems. Here, we synthesize two complementary approaches to more rigorously describe positive interactions and their consequences among organisms, across taxa, and over spatio‐temporal scales. In the first approach, which we call the mechanistic approach, we make a distinction between two principal mechanisms of facilitation—habitat modification and resource modification. Considering the differences in these two mechanisms is critical because it delineates the potential spatio‐temporal bounds over which a positive interaction can occur. We offer guidance on improved sampling regimes for quantification of these mechanistic interactions and their consequences. Second, we present a trait‐based approach in which traits of facilitators or traits of beneficiaries can modulate their magnitude of effect or how they respond to either of the positive interaction mechanisms, respectively. Therefore, both approaches can be integrated together by quantifying the degree to which a focal facilitator's or beneficiary's traits explain the magnitude of a positive effect in space and time. Furthermore, we demonstrate how field measurements and analytical techniques can be used to collect and analyze data to test the predictions presented herein. We conclude by discussing how these approaches can be applied to contemporary challenges in ecology, such as conservation and restoration and suggest avenues for future research. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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24. Variable colour patterns indicate multidimensional, intraspecific trait variation and ecological generalization in moths.
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Forsman, Anders, Polic, Daniela, Sunde, Johanna, Betzholtz, Per‐Eric, and Franzén, Markus
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NOCTUIDAE ,MOTHS ,COLOR ,GENERALIZATION ,ECOSYSTEM dynamics ,PYRALIDAE ,CONSERVATION biology - Abstract
Animal colour patterns long have provided information about key processes that drive the ecological and evolutionary dynamics of biological diversity. Theory and empirical evidence indicate that variation in colour patterns and other traits among individuals generally improves the performance of populations and species, for example by reducing predation risk, increasing establishment success, improving resilience to environmental change, and decreasing risk of extinction. However, little is known about whether and how variation in colour pattern among species is associated with variation in other phenotypic dimensions. To address this issue, we analysed associations of colour pattern with morphological, behavioural and life‐history traits on the basis of data for nearly 400 species of noctuid moths. We found that moths with more variable colour patterns had longer flight activity periods, more diverse habitats and a greater number of host plant species than species with less variable colour patterns. Variable coloration in adult noctuid moths therefore can be considered as indicative of broader niches and generalist diets. Colour pattern variability was not significantly associated with overwintering stage or body size (wing span), and it was independent of whether the colour pattern of the larvae was non‐variable, variable or highly variable. Colour pattern variation during the larval stage tended to increase as the duration of the flight activity period increased, but was independent of the length of the larval period, diet breadth and habitat use. The realization that information on colour pattern variation in adult moths, and possibly other organisms, offers a proxy for niche breadth and dietary generalization can inform management and conservation biology. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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- View/download PDF
25. Ecology of a polymetallic nodule occurrence gradient: Implications for deep‐sea mining.
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Simon‐Lledó, Erik, Bett, Brian J., Huvenne, Veerle A. I., Schoening, Timm, Benoist, Noelie M. A., and Jones, Daniel O. B.
- Subjects
OCEAN mining ,MARINE parks & reserves ,ECOLOGY ,BIODIVERSITY ,AUTONOMOUS underwater vehicles ,BIOLOGICAL variation - Abstract
Abyssal polymetallic nodule fields constitute an unusual deep‐sea habitat. The mix of soft sediment and the hard substratum provided by nodules increases the complexity of these environments. Hard substrata typically support a very distinct fauna to that of seabed sediments, and its presence can play a major role in the structuring of benthic assemblages. We assessed the influence of seafloor nodule cover on the megabenthos of a marine conservation area (area of particular environmental interest 6) in the Clarion Clipperton Zone (3950–4250 m water depth) using extensive photographic surveys from an autonomous underwater vehicle. Variations in nodule cover (1–20%) appeared to exert statistically significant differences in faunal standing stocks, some biological diversity attributes, faunal composition, functional group composition, and the distribution of individual species. The standing stock of both the metazoan fauna and the giant protists (xenophyophores) doubled with a very modest initial increase in nodule cover (from 1% to 3%). Perhaps contrary to expectation, we detected little if any substantive variation in biological diversity along the nodule cover gradient. Faunal composition varied continuously along the nodule cover gradient. We discuss these results in the context of potential seabed‐mining operations and the associated sustainable management and conservation plans. We note in particular that successful conservation actions will likely require the preservation of areas comprising the full range of nodule cover and not just the low cover areas that are least attractive to mining. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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- View/download PDF
26. Biodiversity and thermal ecological function: The influence of freshwater algal diversity on local thermal environments.
- Author
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Missirian, Anouch, Frank, Eyal G., Gersony, Jess T., Wong, Jason C. Y., and Naeem, Shahid
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MICROBIAL diversity ,ALGAL communities ,BIODIVERSITY ,SPECIES diversity ,ECOLOGY ,FRESHWATER biodiversity - Abstract
The influence of temperature on diversity and ecosystem functioning is well studied; the converse however, that is, how biodiversity influences temperature, much less so. We manipulated freshwater algal species diversity in microbial microcosms to uncover how diversity influenced primary production, which is well documented in biodiversity research. We then also explored how visible‐spectrum absorbance and the local thermal environment responded to biodiversity change. Variations in the local thermal environment, that is, in the temperature of the immediate surroundings of a community, are known to matter not only for the rate of ecosystem processes, but also for persistence of species assemblages and the very relationship between biodiversity and ecosystem functioning. In our microcosm experiment, we found a significant positive association between algal species richness and primary production, a negative association between primary production and visible‐spectrum absorbance, and a positive association between visible‐spectrum absorbance and the response of the local thermal environment (i.e., change in thermal infrared emittance over a unit time). These findings support an indirect effect of algal diversity on the local thermal environment pointing to a hitherto unrecognized biodiversity effect in which diversity has a predictable influence on local thermal environments. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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27. Parameterization of biodiversity–productivity relationship and its scale dependency using georeferenced tree‐level data.
- Author
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Jucker, Tommaso, Luo, Weixue, Zhao, Xiuhai, Zhang, Chunyu, Liang, Jingjing, and Cazzolla Gatti, Roberto
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BIODIVERSITY ,ECOLOGY ,CONSERVATION & restoration ,FOREST management ,ECOSYSTEMS - Abstract
Copyright of Journal of Ecology is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2019
- Full Text
- View/download PDF
28. Inferring community assembly processes from macroscopic patterns using dynamic eco‐evolutionary models and Approximate Bayesian Computation (ABC).
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Pontarp, Mikael, Brännström, Åke, Petchey, Owen L., and Poisot, Timothée
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PREDATION ,BIODIVERSITY ,PHYLOGENY ,BAYESIAN analysis ,COMPUTER simulation - Abstract
Statistical techniques exist for inferring community assembly processes from community patterns. Habitat filtering, competition, and biogeographical effects have, for example, been inferred from signals in phenotypic and phylogenetic data. The usefulness of current inference techniques is, however, debated as a mechanistic and causal link between process and pattern is often lacking, and evolutionary processes and trophic interactions are ignored.Here, we revisit the current knowledge on community assembly across scales and, in line with several reviews that have outlined challenges associated with current inference techniques, we identify a discrepancy between the current paradigm of eco‐evolutionary community assembly and current inference techniques that focus mainly on competition and habitat filtering. We argue that trait‐based dynamic eco‐evolutionary models in combination with recently developed model fitting and model evaluation techniques can provide avenues for more accurate, reliable, and inclusive inference. To exemplify, we implement a trait‐based, spatially explicit eco‐evolutionary model and discuss steps of model modification, fitting, and evaluation as an iterative approach enabling inference from diverse data sources.Through a case study on inference of prey and predator niche width in an eco‐evolutionary context, we demonstrate how inclusive and mechanistic approaches—eco‐evolutionary modelling and Approximate Bayesian Computation (ABC)—can enable inference of assembly processes that have been largely neglected by traditional techniques despite the ubiquity of such processes.Much literature points to the limitations of current inference techniques, but concrete solutions to such limitations are few. Many of the challenges associated with novel inference techniques are, however, already to some extent resolved in other fields and thus ready to be put into action in a more formal way for inferring processes of community assembly from signals in various data sources. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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29. Input matters matter: Bioclimatic consistency to map more reliable species distribution models.
- Author
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Morales‐Barbero, Jennifer, Vega‐Álvarez, Julia, and Orme, David
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BIOCLIMATOLOGY ,SPECIES distribution ,BIODIVERSITY ,ECOLOGY ,MAMMALS - Abstract
Copyright of Methods in Ecology & Evolution is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2019
- Full Text
- View/download PDF
30. An expanded modern coexistence theory for empirical applications.
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Ellner, Stephen P., Snyder, Robin E., Adler, Peter B., Hooker, Giles, and Metcalf, Jessica
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INTERNATIONAL relations ,ECOLOGY ,BIODIVERSITY ,POPULATION ,PLANT species - Abstract
Understanding long‐term coexistence of numerous competing species is a longstanding challenge in ecology. Progress requires determining which processes and species differences are most important for coexistence when multiple processes operate and species differ in many ways. Modern coexistence theory (MCT), formalised by Chesson, holds out the promise of doing that, but empirical applications remain scarce. We argue that MCT's mathematical complexity and subtlety have obscured the simplicity and power of its underlying ideas and hindered applications. We present a general computational approach that extends our previous solution for the storage effect to all of standard MCT's spatial and temporal coexistence mechanisms, and also process‐defined mechanisms amenable to direct study such as resource partitioning, indirect competition, and life history trade‐offs. The main components are a method to partition population growth rates into contributions from different mechanisms and their interactions, and numerical calculations in which some mechanisms are removed and others retained. We illustrate how our approach handles features that have not been analysed in the standard framework through several case studies: competing diatom species under fluctuating temperature, plant–soil feedbacks in grasslands, facilitation in a beach grass community, and niche differences with independent effects on recruitment, survival and growth in sagebrush steppe. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
31. Detecting ecological regime shifts from transect data.
- Author
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Ward, Delphi F. L., Wotherspoon, Simon, Melbourne‐Thomas, Jessica, Haapkylä, Jessica, and Johnson, Craig R.
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ECOSYSTEMS ,ECOLOGY ,BIOMES ,TIME series analysis ,BIODIVERSITY ,ECOSYSTEM dynamics - Abstract
Timely detection of ecological regime shifts is a key problem for ecosystem managers, because changed ecosystem dynamics and function will usually necessitate a change in management strategies. However, currently available methods for detecting regime shifts depend on having multiple long time series data from both before and after the regime shift. This data requirement is prohibitive for many ecosystems. Here, we present a new approach for detecting regime shifts from one‐dimensional spatial (transect) data from just a single time step either side of the transition. Characteristic length scale (CLS) estimation is a method of attractor reconstruction combined with nonlinear prediction that enables identification of the emergent scale at which deterministic behavior of the system is best observed. Importantly, previous studies show that a fundamental change in ecosystem dynamics, from one domain of attraction to another, is reflected in a change in the CLS, i.e., the approach enables distinguishing regime shifts from variability in dynamics around a single attractor. Until now the method required highly resolved two‐dimensional spatial data, but here we adapted the approach so that the CLS can be estimated from one‐dimensional transect data. We demonstrate its successful application to both model and real ecosystem data. In our model test cases, we detected change in the CLS in cases where the shape (topology) of the interaction network had changed, leading to a shift in community composition. In an examination of benthic transect data from four Indonesian coral reefs, changes in the CLS for two of the reefs indicate a regime shift. This new development in estimating CLSs makes it possible to detect regime shifts in systems where data are limited, removing ambiguity in the interpretation of community change. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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- View/download PDF
32. Astro‐ecology? Shifting the interdisciplinary collaboration paradigm.
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Buettel, Jessie C., Brook, Barry W., Cole, Andrew, Dickey, John, and Flies, Emily J.
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INTERDISCIPLINARY research ,ECOLOGICAL research ,HYPOTHESIS ,BIODIVERSITY ,ASTRONOMY - Abstract
We present a case study whereby ecological research on fallen trees in forest plots was advanced by a collaboration with astronomers working on the vector fields of stars and gas, and we propose a framework by which such novel collaborations can progress. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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- View/download PDF
33. Size asymmetry of resource competition and the structure of plant communities: Commentary on DeMalach et al. 2016.
- Author
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Herben, Tomáš and Austin, Amy
- Subjects
SPEED humps ,ANATOMY ,BIODIVERSITY ,ECOLOGY ,BIOLOGY - Abstract
The article reports that the hump-back relationship between diversity and productivity is one of the well-known patterns in ecology that have defied unequivocal explanation. Their model also casts new light on data where relationship between richness and productivity is monotonic. Finally, it should be noted that symmetry of competition is an inherent property of the resource contested and is not easily changed by natural selection.
- Published
- 2016
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34. Global dung webs: high trophic generalism of dung beetles along the latitudinal diversity gradient.
- Author
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Frank, Kevin, Krell, Frank‐Thorsten, Slade, Eleanor M., Raine, Elizabeth H., Chiew, Li Yuen, Schmitt, Thomas, Vairappan, Charles S., Walter, Philippe, and Blüthgen, Nico
- Subjects
SPECIES diversity ,BIODIVERSITY ,ECOLOGY ,DUNG beetles ,VERTEBRATES - Abstract
Abstract: At the global scale, species diversity is known to strongly increase towards the equator for most taxa. According to theory, a higher resource specificity of consumers facilitates the coexistence of a larger number of species and has been suggested as an explanation for the latitudinal diversity gradient. However, only few studies support the predicted increase in specialisation or even showed opposite results. Surprisingly, analyses for detritivores are still missing. Therefore, we performed an analysis on the degree of trophic specialisation of dung beetles. We summarised 45 studies, covering the resource preferences of a total of 994503 individuals, to calculate the dung specificity in each study region. Our results highlighted a significant (4.3‐fold) increase in the diversity of beetles attracted to vertebrate dung towards the equator. However, their resource specificity was low, unrelated to diversity and revealed a highly generalistic use of dung resources that remained similar along the latitudinal gradient. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
35. Survey design for precise fire management conservation targets.
- Author
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Sitters, Holly, Di Stefano, Julian, Wills, Timothy, Swan, Matthew, and York, Alan
- Subjects
FIRE management ,ECOLOGY ,BIODIVERSITY ,SUSTAINABILITY ,BIODIVERSITY conservation ,ENVIRONMENTAL monitoring ,STATISTICAL sampling ,MANAGEMENT - Abstract
Common goals of ecological fire management are to sustain biodiversity and minimize extinction risk. A novel approach to achieving these goals determines the relative proportions of vegetation growth stages (equivalent to successional stages, which are categorical representations of time since fire) that maximize a biodiversity index. The method combines data describing species abundances in each growth stage with numerical optimization to define an optimal growth-stage structure that provides a conservation-based operational target for managers. However, conservation targets derived from growth-stage optimization are likely to depend critically on choices regarding input data. There is growing interest in the use of growth-stage optimization as a basis for fire management, thus understanding of how input data influence the outputs is crucial. Simulated data sets provide a flexible platform for systematically varying aspects of survey design and species inclusions. We used artificial data with known properties, and a case-study data set from southeastern Australia, to examine the influence of (1) survey design (total number of sites and their distribution among growth stages) and (2) species inclusions (total number of species and their level of specialization) on the precision of conservation targets. Based on our findings, we recommend that survey designs for precise estimates would ideally involve at least 80 sites, and include at least 80 species. Greater numbers of sites and species will yield increasingly reliable results, but fewer might be sufficient in some circumstances. An even distribution of sites among growth stages was less important than the total number of sites, and omission of species is unlikely to have a major influence on results as long as several species specialize on each growth stage. We highlight the importance of examining the responses of individual species to growth stage before feeding survey data into the growth-stage optimization black box, and advocate use of a resampling procedure to determine the precision of results. Collectively, our findings form a reproducible guide to designing ecological surveys that yield precise conservation targets through growth-stage optimization, and ultimately help sustain biodiversity in fire-prone systems. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
36. A History of Ecological Research Derived from Titles of Articles in the Journal 'Ecology,' 1925-2015.
- Author
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Gorham, Eville and Kelly, Julia
- Subjects
WILDLIFE conservation ,ECOLOGY ,BIODIVERSITY ,QUANTITATIVE research ,SCIENCE - Abstract
A century-spanning history of ecological research in North America is apparent in the titles of articles in the journal 'Ecology.' Term counts in titles, tracked by text analysis over a century, revealed changes in the amount of attention paid to different subfields of the discipline, the development of new subfields, and increasing interaction with other branches of science. They are also relevant to the concept of progress in ecology. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
37. Biome-specific climatic space defined by temperature and precipitation predictability.
- Author
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Jiang, Mingkai, Felzer, Benjamin S., Nielsen, Uffe N., Medlyn, Belinda E., and Fortin, Marie‐Josée
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BIOMES ,EFFECT of climate on biodiversity ,PRECIPITATION forecasting ,TEMPERATURE & the environment ,MACROECOLOGY - Abstract
Aim Global biomes are often classified by mean annual temperature and precipitation, but there is significant overlap between biomes, making it difficult to interpret the role of climate in the distribution of biomes globally. Climate predictability (including long-term reliability of both seasonality and inter-annual variability) varies considerably between biomes and regulates biodiversity distribution, adaptation and evolution, but its global pattern has rarely been investigated. The aim of this study was to characterize climatic space quantitatively for major biomes of the world using temperature and precipitation predictability, and to interpret its biological implications under future climate change. Location Global. Time Period 1901-2012. Methods We calculated global gridded temperature and precipitation predictability based on an information theory approach, and compared climatic spaces defined by these measures within and across biomes. Results We show that temperature predictability has a clear latitudinal gradient, whereas precipitation predictability is geographically variable. We further show that temperature and precipitation predictability form distinct climatic spaces for major biomes across the globe, and importantly, temperature and precipitation predictability can robustly distinguish biomes that are overlapping in mean annual climate statistics. Main conclusions Climatic space created by temperature and precipitation predictability supplements the traditional biome-specific climatic spaces created by annual mean temperature and total precipitation. Quantifying measures of climate predictability helps us to understand adaptation strategies adopted by local organisms within and across biomes. Our results show that quantifying climate predictability is a simple and effective way to delineate more robustly biome climate space and its influences on macroecology and evolutionary biology, which in turn could underpin conservation efforts under future climate change, especially when prevailing climates are comparable in terms of magnitude. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
38. Incorporating intraspecific trait variation into functional diversity: Impacts of selective logging on birds in Borneo.
- Author
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Ross, Samuel R. P.‐J., Hassall, Christopher, Hoppitt, William J. E., Edwards, Felicity A., Edwards, David P., Hamer, Keith C., and Carvalheiro, Luísa
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HABITAT conservation ,BIODIVERSITY ,SELECTIVE logging ,STATISTICAL bootstrapping ,CONSERVATION of natural resources ,BIOLOGICAL variation ,RAIN forests ,ECOLOGY - Abstract
As conservation increasingly recognizes the importance of species' functional roles in ecosystem processes, studies are shifting away from measuring species richness towards measures that account for the functional differences between species in a community. These functional diversity ( FD) indices have received much recent attention and refinement, but their greatest limitation remains their inability to incorporate information about intraspecific trait variation ( ITV)., We use an individual-based model to account for ITV when calculating the functional diversity of two avian communities in Borneo; one in primary (unlogged) forest and one in selectively logged forest. We deal with the scarcity of trait data for individual species by developing a simulation approach, taking data from the literature where necessary. Using a bootstrapping procedure, we produce a range of ecologically feasible FD values taking account of ITV for five commonly used FD indices, and we quantify the confidence that can be placed in these values, using a newly developed bootstrapping method: bt FD., We find that incorporating ITV significantly alters the FD values of all indices used in our models. The rank order of FD for the two communities, indicating whether diversity was higher in primary or selectively logged forest, is largely unchanged by the inclusion of ITV. However, by accounting for ITV, we are able to reveal previously unrecognized impacts of selective logging on avian functional diversity through a narrower dispersion of individuals in functional trait space in logged forest., Our results highlight the importance of incorporating ITV into measures of functional diversity, whilst our simulation approach addresses the frequently encountered difficulty of working with sparse trait data and quantifies the confidence that should be placed in such findings. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
39. Quantifying spatial variation in the size and structure of ecologically stratified communities.
- Author
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Tenan, Simone, Brambilla, Mattia, Pedrini, Paolo, Sutherland, Chris, and Freckleton, Robert
- Subjects
ECOLOGY ,SPECIES ,NATURE & nurture ,BIODIVERSITY ,COMMUNITIES - Abstract
Including ecological specialization (e.g. functional guild) in analyses performed across regions can help to study how size and structure of communities vary across environmental gradients. Multi-species occupancy models, and their extension to a multi-region framework, represent useful tools for such gradient analysis based on functional traits. However, in these models species richness is only a derived parameter and therefore explicit relationships cannot be inferred., We provide a novel hierarchical multi-region community model that allows for direct modelling of trait-based patterns of species richness along environmental gradients by partitioning communities into ecologically relevant strata (e.g. guilds). We illustrate the flexibility of the model by simulations, where we estimate guild richness and community composition using both categorical and continuous species traits. In addition, we apply our model to data from eight avian communities to explore how guild richness varies across elevational gradients., Simulations indicate that the model is able to estimate relationships between guild richness and environmental gradients even when the number of regions is low. Applying the model to the bird community data set, we show how the number of species in four feeding guilds varies in different ways across an elevational gradient., Understanding large scale variation in species richness and how it relates to environmental gradients requires an explicit treatment of community structure. Our modelling approach allows the testing of hypotheses directly and simultaneously on strata- and community-specific species richness while accounting for the issues of rarity and detectability, and can be used to investigate the mechanisms which shape large scale spatial variation in species richness. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
40. Changes in richness and community composition of ectomycorrhizal fungi among altitudinal vegetation types on Mount Kinabalu in Borneo.
- Author
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Geml, József, Morgado, Luis N., Semenova‐Nelsen, Tatiana A., and Schilthuizen, Menno
- Subjects
ECTOMYCORRHIZAL fungi ,BIODIVERSITY ,FUNGAL communities ,MID-domain effect ,TROPICAL biology ,SPECIES distribution ,ECOLOGY - Abstract
The distribution patterns of tropical ectomycorrhizal ( ECM) fungi along altitudinal gradients remain largely unknown. Furthermore, despite being an iconic site for biodiversity research, virtually nothing is known about the diversity and spatial patterns of fungi on Mt Kinabalu and neighbouring mountain ranges., We carried out deep DNA sequencing of soil samples collected between 425 and 4000 m above sea level to compare richness and community composition of ECM fungi among altitudinal forest types in Borneo. In addition, we tested whether the observed patterns are driven by habitat or by geometric effect of overlapping ranges of species (mid-domain effect)., Community composition of ECM fungi was strongly correlated with elevation. In most genera, richness peaked in the mid-elevation montane forest zone, with the exception of tomentelloid fungi, which showed monotonal decrease in richness with increasing altitude. Richness in lower-mid- and mid-elevations was significantly greater than predicted under the mid-domain effect model., We provide the first insight into the composition of ECM fungal communities and their strong altitudinal turnover in Borneo. The high richness and restricted distribution of many ECM fungi in the montane forests suggest that mid-elevation peak richness is primarily driven by environmental characteristics of this habitat and not by the mid-domain effect. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
41. Urbanisation and the loss of phylogenetic diversity in birds.
- Author
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Sol, Daniel, Bartomeus, Ignasi, González‐Lagos, César, Pavoine, Sandrine, and Haddad, Nick
- Subjects
URBANIZATION ,PHYLOGENY ,BIODIVERSITY ,GLOBAL environmental change ,ECOLOGY ,BIOLOGICAL invasions - Abstract
Despite the recognised conservation value of phylogenetic diversity, little is known about how it is affected by the urbanisation process. Combining a complete avian phylogeny with surveys along urbanisation gradients from five continents, we show that highly urbanised environments supported on average 450 million fewer years of evolutionary history than the surrounding natural environments. This loss was primarily caused by species loss and could have been higher had not been partially compensated by the addition of urban exploiters and some exotic species. Highly urbanised environments also supported fewer evolutionary distinctive species, implying a disproportionate loss of evolutionary history. Compared with highly urbanised environments, changes in phylogenetic richness and evolutionary distinctiveness were less substantial in moderately urbanised environments. Protecting pristine environments is therefore essential for maintaining phylogenetic diversity, but moderate levels of urbanisation still preserve much of the original diversity. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
42. Trait variation in response to varying winter temperatures, diversity patterns and signatures of selection along the latitudinal distribution of the widespread grassland plant Arrhenatherum elatius.
- Author
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Michalski, Stefan G., Malyshev, Andrey V., and Kreyling, Juergen
- Subjects
GRASSLANDS ,ECOLOGY ,BIODIVERSITY ,CELL migration ,ARRHENATHERUM elatius ,GENOTYPES - Abstract
Across Europe, genetic diversity can be expected to decline toward the North because of stochastic and selective effects which may imply diminished phenotypic variation and less potential for future genetic adaptations to environmental change. Understanding such latitudinal patterns can aid provenance selection for breeding or assisted migration approaches. In an experiment simulating different winter temperatures, we assessed quantitative trait variation, genetic diversity, and differentiation for natural populations of the grass Arrhenatherum elatius originating from a large latitudinal gradient. In general, populations from the North grew smaller and had a lower flowering probability. Toward the North, the absolute plastic response to the different winter conditions as well as heritability for biomass production significantly declined. Genetic differentiation in plant height and probability of flowering were very strong and significantly higher than under neutral expectations derived from SNP data, suggesting adaptive differentiation. Differentiation in biomass production did not exceed but mirrored patterns for neutral genetic differentiation, suggesting that migration-related processes caused the observed clinal trait variation. Our results demonstrate that genetic diversity and trait differentiation patterns for A. elatius along a latitudinal gradient are likely shaped by both local selection and genetic drift. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
43. Restoration and management for plant diversity enhances the rate of belowground ecosystem recovery.
- Author
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Klopf, Ryan P., Baer, Sara G., Bach, Elizabeth M., and Six, Johan
- Subjects
PLANT diversity ,LAND management ,SOIL structure ,GRASSLANDS ,ECOLOGY ,SOIL chronosequences - Abstract
The positive relationship between plant diversity and ecosystem functioning has been criticized for its applicability at large scales and in less controlled environments that are relevant to land management. To inform this gap between ecological theory and application, we compared recovery rates of belowground properties using two chronosequences consisting of continuously cultivated and independently restored fields with contrasting diversity management strategies: grasslands restored with high plant richness and managed for diversity with frequent burning ( n = 20) and grasslands restored with fewer species that were infrequently burned ( n = 15). Restoration and management for plant diversity resulted in 250% higher plant richness. Greater recovery of roots and more predictable recovery of the active microbial biomass across the high diversity management strategy chronosequence corresponded with faster recovery of soil structure. The high diversity grasslands also had greater nutrient conservation indicated by lower available inorganic nitrogen. Thus, mesic grasslands restored with more species and managed for high plant diversity with frequent burning enhances the rate of belowground ecosystem recovery from long-term disturbance at a scale relevant to conservation practices on the landscape. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
44. Towards a thesaurus of plant characteristics: an ecological contribution.
- Author
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Garnier, Eric, Stahl, Ulrike, Laporte, Marie ‐ Angélique, Kattge, Jens, Mougenot, Isabelle, Kühn, Ingolf, Laporte, Baptiste, Amiaud, Bernard, Ahrestani, Farshid S., Bönisch, Gerhard, Bunker, Daniel E., Cornelissen, J. Hans C., Díaz, Sandra, Enquist, Brian J., Gachet, Sophie, Jaureguiberry, Pedro, Kleyer, Michael, Lavorel, Sandra, Maicher, Lutz, and Pérez ‐ Harguindeguy, Natalia
- Subjects
PLANT ecology ,SPECIES distribution ,APPLICATION program interfaces ,SEMANTIC Web ,ONTOLOGIES (Information retrieval) - Abstract
Ecological research produces a tremendous amount of data, but the diversity in scales and topics covered and the ways in which studies are carried out result in large numbers of small, idiosyncratic data sets using heterogeneous terminologies. Such heterogeneity can be attributed, in part, to a lack of standards for acquiring, organizing and describing data. Here, we propose a terminological resource, a Thesaurus Of Plant characteristics ( TOP), whose aim is to harmonize and formalize concepts for plant characteristics widely used in ecology., TOP concentrates on two types of plant characteristics: traits and environmental associations. It builds on previous initiatives for several aspects: (i) characteristics are designed following the entity-quality (EQ) model (a characteristic is modelled as the 'Quality'
of an 'Entity'
) used in the context of Open Biological Ontologies; (ii) whenever possible, the Entities and Qualities are taken from existing terminology standards, mainly the Plant Ontology ( PO) and Phenotypic Quality Ontology ( PATO) ontologies; and (iii) whenever a characteristic already has a definition, if appropriate, it is reused and referenced. The development of TOP, which complies with semantic web principles, was carried out through the involvement of experts from both the ecology and the semantics research communities. Regular updates of TOP are planned, based on community feedback and involvement., TOP provides names, definitions, units, synonyms and related terms for about 850 plant characteristics. TOP is available online (), and can be browsed using an alphabetical list of characteristics, a hierarchical tree of characteristics, a faceted and a free-text search, and through an Application Programming Interface., Synthesis. Harmonizing definitions of concepts, as proposed by TOP, forms the basis for better integration of data across heterogeneous data sets and terminologies, thereby increasing the potential for data reuse. It also allows enhanced scientific synthesis. TOP therefore has the potential to improve research and communication not only within the field of ecology, but also in related fields with interest in plant functioning and distribution. [ABSTRACT FROM AUTHOR] - Published
- 2017
- Full Text
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45. On nonepistemic values in conservation biology.
- Author
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Baumgaertner, Bert and Holthuijzen, Wieteke
- Subjects
CONSERVATION biology ,ECOLOGY ,BIODIVERSITY ,SPECIES diversity ,METHODOLOGY - Abstract
Copyright of Conservation Biology is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2017
- Full Text
- View/download PDF
46. A sixth-level habitat cascade increases biodiversity in an intertidal estuary.
- Author
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Thomsen, Mads S., Hildebrand, Thomas, South, Paul M., Foster, Travis, Siciliano, Alfonso, Oldach, Eliza, and Schiel, David R.
- Subjects
HABITATS ,ECOLOGY ,BIODIVERSITY ,BRYOZOA ,HABITAT partitioning (Ecology) - Abstract
Many studies have documented habitat cascades where two co-occurring habitat-forming species control biodiversity. However, more than two habitat-formers could theoretically co-occur. We here documented a sixth-level habitat cascade from the Avon-Heathcote Estuary, New Zealand, by correlating counts of attached inhabitants to the size and accumulated biomass of their biogenic hosts. These data revealed predictable sequences of habitat-formation (=attachment space). First, the bivalve Austrovenus provided habitat for green seaweeds ( Ulva) that provided habitat for trochid snails in a typical estuarine habitat cascade. However, the trochids also provided habitat for the nonnative bryozoan Conopeum that provided habitat for the red seaweed Gigartina that provided habitat for more trochids, thereby resetting the sequence of the habitat cascade, theoretically in perpetuity. Austrovenus is here the basal habitat-former that controls this 'long' cascade. The strength of facilitation increased with seaweed frond size, accumulated seaweed biomass, accumulated shell biomass but less with shell size. We also found that Ulva attached to all habitat-formers, trochids attached to Ulva and Gigartina, and Conopeum and Gigartina predominately attached to trochids. These 'affinities' for different habitat-forming species probably reflect species-specific traits of juveniles and adults. Finally, manipulative experiments confirmed that the amount of seaweed and trochids was important and consistent regulators of the habitat cascade in different estuarine environments. We also interpreted this cascade as a habitat-formation network that describes the likelihood of an inhabitant being found attached to a specific habitat-former. We conclude that the strength of the cascade increased with the amount of higher-order habitat-formers, with differences in form and function between higher and lower-order habitat-formers, and with the affinity of inhabitants for higher-order habitat-formers. We suggest that long habitat cascades are common where species traits allow for physical attachment to other species, such as in marine benthic systems and old forest. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
47. Agricultural land-use history causes persistent loss of plant phylogenetic diversity.
- Author
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TURLEY, NASH E. and BRUDVIG, LARS A.
- Subjects
AGRICULTURE ,BIODIVERSITY ,ECOLOGY ,PHYLOGENY ,CHEMOTAXONOMY - Abstract
Intensive land use activities, such as agriculture, are a leading cause of biodiversity loss and can have lasting impacts on ecological systems. Yet, few studies have investigated how land-use legacies impact phylogenetic diversity (the total amount of evolutionary history in a community) or how restoration activities might mitigate legacy effects on biodiversity. We studied ground-layer plant communities in 27 pairs of Remnant (no agricultural history) and Post-agricultural (agriculture abandoned >60 yr ago) longleaf pine savannas, half of which we restored by thinning trees to reinstate open savanna conditions. We found that agricultural history had no impact on species richness, but did alter community composition and reduce phylogenetic diversity by 566 million years/1,000 m
2 . This loss of phylogenetic diversity in post-agricultural savannas was due to, in part, a reduction in the average evolutionary distance between pairs of closely related species, that is, increased phylogenetic clustering. Habitat restoration increased species richness by 27% and phylogenetic diversity by 914 million years but did not eliminate the effects of agricultural land use on community composition and phylogenetic structure. These results demonstrate the persistence of agricultural legacies, even in the face of intensive restoration efforts, and the importance of considering biodiversity broadly when evaluating human impacts on ecosystems. [ABSTRACT FROM AUTHOR]- Published
- 2016
- Full Text
- View/download PDF
48. The ecologist's field guide to sequence-based identification of biodiversity.
- Author
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Creer, Simon, Deiner, Kristy, Frey, Serita, Porazinska, Dorota, Taberlet, Pierre, Thomas, W. Kelley, Potter, Caitlin, Bik, Holly M., and Freckleton, Robert
- Subjects
BIODIVERSITY ,MOLECULAR genetics ,NUCLEOTIDE sequencing ,ECOLOGY - Abstract
The past 100 years of ecological research has seen substantial progress in understanding the natural world and likely effects of change, whether natural or anthropogenic. Traditional ecological approaches underpin such advances, but would additionally benefit from recent developments in the sequence-based quantification of biodiversity from the fields of molecular ecology and genomics. By building on a long and rich history of molecular taxonomy and taking advantage of the new generation of DNA sequencing technologies, we are gaining previously impossible insights into alpha and beta diversity from all domains of life, irrespective of body size. While a number of complementary reviews are available in specialist journals, our aim here is to succinctly describe the different technologies available within the omics toolbox and showcase the opportunities available to contemporary ecologists to advance our understanding of biodiversity and its potential roles in ecosystems., Starting in the field, we walk the reader through sampling and preservation of genomic material, including typical taxonomy marker genes used for species identification. Moving on to the laboratory, we cover nucleic acid extraction approaches and highlight the principal features of using marker gene assessment, metagenomics, metatranscriptomics, single-cell genomics and targeted genome sequencing as complementary approaches to assess the taxonomic and functional characteristics of biodiversity. We additionally provide clear guidance on the forms of DNA found in the environmental samples (e.g. environmental vs. ancient DNA) and highlight a selection of case studies, including the investigation of trophic relationships/food webs. Given the maturity of sequence-based identification of prokaryotes and microbial eukaryotes, more exposure is given to macrobial communities. We additionally illustrate current approaches to genomic data analysis and highlight the exciting prospects of the publicly available data underpinning published sequence-based studies., Given that ecology 'has to count', we identify the impact that molecular genetic analyses have had on stakeholders and end-users and predict future developments for the fields of biomonitoring. Furthermore, we conclude by highlighting future opportunities in the field of systems ecology afforded by effective engagement between the fields of traditional and molecular ecology. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
49. Island and island-like marine environments.
- Author
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Dawson, Michael N. and Santos, Ana
- Subjects
LIFE (Biology) ,SYSTEM integration ,MARINE biomass ,SYMPATRIC speciation ,ORGANISMS - Abstract
Islands are pieces of land entirely surrounded by sea on which terrestrial and marine organisms live as little as a few metres apart. Yet, in contrast to terrestrial species, marine species have attracted little attention in studies of island theory. The experimental and conceptual origins of this dichotomy date back to the 1970s, although the apposition has softened in the early 2000s, in part a consequence of phylogeographic analyses and the discovery of new marine environments. Here, I explore the possible range of island and island-like settings in the marine realm and find good evidence, albeit in short supply, for integrating marine with terrestrial perspectives during the current transition from equilibrium to general dynamic models of island biogeography. This integration of marine systems into island theory will be facilitated by three advances: (1) development of many descriptive marine studies to reduce the current deficit, (2) design of rigorous comparative studies within and across realms, and (3) modification of conceptual models to unite seemingly disparate situations, for example describing islands in terms of ecological-evolutionary processes. Marine island biogeography is in its infancy; it may present situations that are uncommon in the existing literature, but not rare in nature, and thus contribute substantially to the new dynamic outlook on a half-century-old theme. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
50. Mangrove response to environmental change in Australia's Gulf of Carpentaria.
- Author
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Asbridge, Emma, Lucas, Richard, Ticehurst, Catherine, and Bunting, Peter
- Subjects
MANGROVE plants ,GLOBAL environmental change ,ECOSYSTEMS - Abstract
Across their range, mangroves are responding to coastal environmental change. However, separating the influence of human activities from natural events and processes (including that associated with climatic fluctuation) is often difficult. In the Gulf of Carpentaria, northern Australia (Leichhardt, Nicholson, Mornington Inlet, and Flinders River catchments), changes in mangroves are assumed to be the result of natural drivers as human impacts are minimal. By comparing classifications from time series of Landsat sensor data for the period 1987-2014, mangroves were observed to have extended seawards by up to 1.9 km (perpendicular to the coastline), with inland intrusion occurring along many of the rivers and rivulets in the tidal reaches. Seaward expansion was particularly evident near the mouth of the Leichhardt River, and was associated with peaks in river discharge with Li DAR data indicating distinct structural zones developing following each large rainfall and discharge event. However, along the Gulf coast, and particularly within the Mornington Inlet catchment, the expansion was more gradual and linked to inundation and regular sediment supply through freshwater input. Landward expansion along the Mornington Inlet catchment was attributed to the combined effects of sea level rise and prolonged periods of tidal and freshwater inundation on coastal lowlands. The study concluded that increased amounts of rainfall and associated flooding and sea level rise were responsible for recent seaward and landward extension of mangroves in this region. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
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