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Digital twins represent a promising approach for sustainable building operations and management in the context of the carbon neutrality goals of the European Union (EU). Using OpenStudio, an opensource platform for building energy modeling, we demonstrated the creation and editing of building digital twins. OpenStudio provides a user-friendly interface and extensive simulation capabilities, allowing detailed and accurate modeling of building components and systems. Using OpenStudio Measures, users can automate tasks and customize simulation models to optimize the building performance. The process of creating a building digital twin involves collecting historical data and accurately representing the building geometry; materials; schedules; and heating, ventilation, and air conditioning (HVAC) systems. Challenges such as data availability and model accuracy highlight the importance of modeling practices. Editing the digital twin involves modifying the OpenStudio model files and EnergyPlus weather files to simulate different building operation scenarios. Python programming language opportunities were considered for digital twin file modification. The potential of digital twins lies in their ability to simulate future building conditions and optimize building system settings. By integrating digital twins with machine learning algorithms and connecting them directly to building management systems, optimal building control strategies can be automated, thereby reducing energy consumption and improving occupant comfort levels. [ABSTRACT FROM AUTHOR]

A transformer inter-turn fault identification method is proposed based on the digital twin concept to tackle the challenges of high operational complexity and low accuracy associated with traditional transformer fault identification methods. Initially, the Bald Eagle Search algorithm is employed to optimize the critical parameters of the Extreme Learning Machine (ELM), determining the optimal input layer weight and hidden layer threshold of the Extreme Learning Machine. Subsequently, leveraging the digital twin concept, a digital replica of the physical transformer is established, enabling multi-physical field coupling simulation encompassing electrical, thermal, and acoustic domains to elucidate the variation patterns of various physical parameters across different operational scenarios and fault scenarios. Furthermore, key physical characteristic parameters such as sound pressure and winding hot spot temperature are carefully selected to drive a fault identification model tailored to inter-turn faults within the framework of the digital twin concept. Through a detailed investigation using 630 kV A/10 kV transformers as a case study, the results exhibit an impressive fault identification accuracy of 95.24% for the proposed method. Comparative analysis reveals notable enhancements in fault identification accuracy of 12.22%, 7.85%, and 3.73% for ELM, Support Vector Machine and Tuna Swarm Optimization --ELM models, respectively. These findings underscore the effectiveness and practicality of the transformer inter-turn fault identification method based on the digital twin concept, offering valuable insights for the real-time monitoring and diagnosis of inter-turn faults in transformers. [ABSTRACT FROM AUTHOR]

Mechanistic learning refers to the synergistic combination of mechanistic mathematical modeling and data-driven machine or deep learning. This emerging field finds increasing applications in (mathematical) oncology. This review aims to capture the current state of the field and provides a perspective on how mechanistic learning may progress in the oncology domain. We highlight the synergistic potential of mechanistic learning and point out similarities and differences between purely data-driven and mechanistic approaches concerning model complexity, data requirements, outputs generated, and interpretability of the algorithms and their results. Four categories of mechanistic learning (sequential, parallel, extrinsic, intrinsic) of mechanistic learning are presented with specific examples. We discuss a range of techniques including physics-informed neural networks, surrogate model learning, and digital twins. Example applications address complex problems predominantly from the domain of oncology research such as longitudinal tumor response predictions or time-to-event modeling. As the field of mechanistic learning advances, we aim for this review and proposed categorization framework to foster additional collaboration between the data- and knowledge-driven modeling fields. Further collaboration will help address difficult issues in oncology such as limited data availability, requirements of model transparency, and complex input data which are embraced in a mechanistic learning framework. [ABSTRACT FROM AUTHOR]

The recently proposed Chemical Reaction Neural Network (CRNN) discovers chemical reaction pathways from time resolved species concentration data in a deterministic manner. Since the weights and biases of a CRNN are physically interpretable, the CRNN acts as a digital twin of a classical chemical reaction network. In this study, we employ a Bayesian inference analysis coupled with neural ordinary differential equations (ODEs) on this digital twin to discover chemical reaction pathways in a probabilistic manner. This allows for estimation of the uncertainty surrounding the learned reaction network. To achieve this, we propose an algorithm which combines neural ODEs with a preconditioned stochastic gradient langevin descent (pSGLD) Bayesian framework, and ultimately performs posterior sampling on the neural network weights. We demonstrate the successful implementation of this algorithm on several reaction systems by not only recovering the chemical reaction pathways but also estimating the uncertainty in our predictions. We compare the results of the pSGLD with that of the standard SGLD and show that this optimizer more efficiently and accurately estimates the posterior of the reaction network parameters. Additionally, we demonstrate how the embedding of scientific knowledge improves extrapolation accuracy by comparing results to purely data-driven machine learning methods. Together, this provides a new framework for robust, autonomous Bayesian inference on unknown or complex chemical and biological reaction systems. [ABSTRACT FROM AUTHOR]

Introduction: A digital twin is a virtual representation of a patient's disease, facilitating real-time monitoring, analysis, and simulation. This enables the prediction of disease progression, optimization of care delivery, and improvement of outcomes. Methods: Here, we introduce a digital twin framework for type 2 diabetes (T2D) that integrates machine learning with multiomic data, knowledge graphs, and mechanistic models. By analyzing a substantial multiomic and clinical dataset, we constructed predictive machine learning models to forecast disease progression. Furthermore, knowledge graphs were employed to elucidate and contextualize multiomic-disease relationships. Results and discussion: Our findings not only reaffirm known targetable disease components but also spotlight novel ones, unveiled through this integrated approach. The versatile components presented in this study can be incorporated into a digital twin system, enhancing our grasp of diseases and propelling the advancement of precision medicine. [ABSTRACT FROM AUTHOR]

In the era of advancedmanufacturing, digital twins have emerged as a foundational technology, offering the promise of improved efficiency, precision, and predictive capabilities. However, the increasing presence of AI tools for digital twinmodels and their integration into industrial processes has brought forth a pressing need for trustworthy and reliable systems. Uncertainty-Aware eXplainable Artificial Intelligence (UAXAI) is proposed as a critical paradigm to address these challenges, as it allows for the quantification and communication of uncertainties associated with predictive models and their corresponding explanations. As a platform and guiding philosophy to promote human-centered trust, UAXAI is based on five fundamental pillars: accessibility, reliability, explainability, robustness, and computational efficiency. The development of UAXAI caters to a diverse set of stakeholders, including end users, developers, regulatory bodies, the scientific community, and industrial players, each with their unique perspectives on trust and transparency in digital twins. [ABSTRACT FROM AUTHOR]

In the era of advanced manufacturing, digital twins have emerged as a foundational technology, offering the promise of improved efficiency, precision, and predictive capabilities. However, the increasing presence of AI tools for digital twin models and their integration into industrial processes has brought forth a pressing need for trustworthy and reliable systems. Uncertainty-Aware eXplainable Artificial Intelligence (UAXAI) is proposed as a critical paradigm to address these challenges, as it allows for the quantification and communication of uncertainties associated with predictive models and their corresponding explanations. As a platform and guiding philosophy to promote human-centered trust, UAXAI is based on five fundamental pillars: accessibility, reliability, explainability, robustness, and computational efficiency. The development of UAXAI caters to a diverse set of stakeholders, including end users, developers, regulatory bodies, the scientific community, and industrial players, each with their unique perspectives on trust and transparency in digital twins.

Largely unknown just a few decades ago, computational systems biology is now a central methodology for biological and medical research. This amazing ascent raises the question of what the community should do next. The article outlines our personal vision for the future of computational systems biology, suggesting the need to address both mindsets and methodologies. We present this vision by focusing on current and anticipated research goals, the development of strong computational tools, likely prominent applications, education of the nextgeneration of scientists, and outreach to the public. In our opinion, two classes of broad research goals have emerged in recent years and will guide future efforts. The first goal targets computational models of increasing size and complexity, aimed at solving emerging health-related challenges, such as realistic whole-cell and organ models, disease simulators and digital twins, in silico clinical trials, and clinically translational applications in the context of therapeutic drug development. Such large models will also lead us toward solutions to pressing issues in agriculture and environmental sustainability, including sufficient food availability and life in changing habitats. The second goal is a deep understanding of the essence of system designs and strategies with which nature solves problems. This understanding will help us explain observed biological structures and guide forays into synthetic biological systems. Regarding effective methodologies, we suggest efforts toward automated data pipelines from raw biomedical data all the way to spatiotemporal mechanistic model. These will be supported by dynamic methods of statistics, machine learning, artificial intelligence and streamlined strategies of dynamic model design, striking a fine balance between modeling realistic complexity and abstracted simplicity. Finally, we suggest the need for a concerted, community-wide emphasis on effective education in systems biology, implemented as a combination of formal instruction and hands-on mentoring. The educational efforts should furthermore be extended toward the public through books, blogs, social media, and interactive networking opportunities, with the ultimate goal of training in state-of-the-art technology while recapturing the lost art of synthesis. [ABSTRACT FROM AUTHOR]

Largely unknown just a few decades ago, computational systems biology is now a central methodology for biological and medical research. This amazing ascent raises the question of what the community should do next. The article outlines our personal vision for the future of computational systems biology, suggesting the need to address both mindsets and methodologies. We present this vision by focusing on current and anticipated research goals, the development of strong computational tools, likely prominent applications, education of the next-generation of scientists, and outreach to the public. In our opinion, two classes of broad research goals have emerged in recent years and will guide future efforts. The first goal targets computational models of increasing size and complexity, aimed at solving emerging health-related challenges, such as realistic whole-cell and organ models, disease simulators and digital twins, in silico clinical trials, and clinically translational applications in the context of therapeutic drug development. Such large models will also lead us toward solutions to pressing issues in agriculture and environmental sustainability, including sufficient food availability and life in changing habitats. The second goal is a deep understanding of the essence of system designs and strategies with which nature solves problems. This understanding will help us explain observed biological structures and guide forays into synthetic biological systems. Regarding effective methodologies, we suggest efforts toward automated data pipelines from raw biomedical data all the way to spatiotemporal mechanistic model. These will be supported by dynamic methods of statistics, machine learning, artificial intelligence and streamlined strategies of dynamic model design, striking a fine balance between modeling realistic complexity and abstracted simplicity. Finally, we suggest the need for a concerted, community-wide emphasis on effective education in systems biology, implemented as a combination of formal instruction and hands-on mentoring. The educational efforts should furthermore be extended toward the public through books, blogs, social media, and interactive networking opportunities, with the ultimate goal of training in state-of-the-art technology while recapturing the lost art of synthesis.

Atrial fibrillation (AF) with multiple complications, high morbidity and mortality, and low cure rates, has become a global public health problem. Although significant progress has been made in the treatment methods represented by anti-AF drugs and radiofrequency ablation, the therapeutic effect is not as good as expected. The reason is mainly because of our lack of understanding of AF mechanisms. This field has benefited from mechanistic and (or) statistical methodologies. Recent renewed interest in digital twin techniques by synergizing between mechanistic and statistical models has opened new frontiers in AF analysis. In the review, we briefly present findings that gave rise to the AF pathophysiology and current therapeutic modalities. We then summarize the achievements of digital twin technologies in three aspects: understanding AF mechanisms, screening anti-AF drugs and optimizing ablation strategies. Finally, we discuss the challenges that hinder the clinical application of the digital twin heart. With the rapid progress in data reuse and sharing, we expect their application to realize the transition from AF description to response prediction. [ABSTRACT FROM AUTHOR]

Forest succession analysis can predict forest change trends in the study area, which provides an important basis for other studies. Remote sensing is a recognized and effective tool in forestry succession analysis. Many forest modeling studies use statistic values, but only a few uses remote sensing images. In this study, we propose a machine learning-based digital twin approach for forestry. A data processing algorithm was designed to process Landsat 7 remote sensing data as model's input. An LSTM-based model was constructed to fit historical image data of the study area. The experimental results show that this study's digital twin method can effectively forecast the study area's future image. [ABSTRACT FROM AUTHOR]

The development of digital cancer twins relies on the capture of high-resolution representations of individual cancer patients throughout the course of their treatment. Our research aims to improve the detection of metastatic disease over time from structured radiology reports by exposing prediction models to historical information. We demonstrate that Natural language processing (NLP) can generate better weak labels for semi-supervised classification of computed tomography (CT) reports when it is exposed to consecutive reports through a patient's treatment history. Around 714,454 structured radiology reports from Memorial Sloan Kettering Cancer Center adhering to a standardized departmental structured template were used for model development with a subset of the reports included for validation. To develop the models, a subset of the reports was curated for ground-truth: 7,732 total reports in the lung metastases dataset from 867 individual patients; 2,777 reports in the liver metastases dataset from 315 patients; and 4,107 reports in the adrenal metastases dataset from 404 patients. We use NLP to extract and encode important features from the structured text reports, which are then used to develop, train, and validate models. Three models—a simple convolutional neural network (CNN), a CNN augmented with an attention layer, and a recurrent neural network (RNN)—were developed to classify the type of metastatic disease and validated against the ground truth labels. The models use features from consecutive structured text radiology reports of a patient to predict the presence of metastatic disease in the reports. A single-report model, previously developed to analyze one report instead of multiple past reports, is included and the results from all four models are compared based on accuracy, precision, recall, and F1-score. The best model is used to label all 714,454 reports to generate metastases maps. Our results suggest that NLP models can extract cancer progression patterns from multiple consecutive reports and predict the presence of metastatic disease in multiple organs with higher performance when compared with a single-report-based prediction. It demonstrates a promising automated approach to label large numbers of radiology reports without involving human experts in a time- and cost-effective manner and enables tracking of cancer progression over time.

Digital twins are emerging as powerful tools for supporting innovation as well as optimizing the in-service performance of a broad range of complex physical machines, devices, and components. A digital twin is generally designed to provide accurate in-silico representation of the form (i.e., appearance) and the functional response of a specified (unique) physical twin. This paper offers a new perspective on how the emerging concept of digital twins could be applied to accelerate materials innovation efforts. Specifically, it is argued that the material itself can be considered as a highly complex multiscale physical system whose form (i.e., details of the material structure over a hierarchy of material length) and function (i.e., response to external stimuli typically characterized through suitably defined material properties) can be captured suitably in a digital twin. Accordingly, the digital twin can represent the evolution of structure, process, and performance of the material over time, with regard to both process history and in-service environment. This paper establishes the foundational concepts and frameworks needed to formulate and continuously update both the form and function of the digital twin of a selected material physical twin. The form of the proposed material digital twin can be captured effectively using the broadly applicable framework of n-point spatial correlations, while its function at the different length scales can be captured using homogenization and localization process-structure-property surrogate models calibrated to collections of available experimental and physics-based simulation data.