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Apple replant disease (ARD) negatively affects plant growth and reduces yields in replanted orchards. In this study, biochar and humic acid were applied to apple replant soil. We aimed to investigate whether biochar and humic acid could promote plant growth and alleviate apple replant disease by reducing the growth of harmful soil microorganisms, changing soil microbial community structure, and improving the soil environment. This experiment included five treatments: apple replant soil (CK), apple replant soil with methyl bromide fumigation (FM), replant soil with biochar addition (2 %), replant soil with humic acid addition (1.5 ‰), and replant soil with biochar combined with humic acid. Seedling biomass, the activity of antioxidant enzymes in the leaves and roots, and soil environmental variables were measured. Microbial community composition and structure were analyzed using ITS gene sequencing. Biochar and humic acid significantly reduced the abundance of Fusarium and promoted the recovery of replant soil microbial communities. Biochar and humic acid also increased the soil enzymes activity (urease, invertase, neutral phosphatase, and catalase), the plant height, fresh weight, dry weight, the activity of antioxidant enzymes (superoxide dismutase, peroxidase, and catalase), and root indexes of apple seedlings increased in replant soil. In sum, We can use biochar combined with humic acid to alleviate apple replant disease. • Biochar and humic acid could reduce Fusarium which causes the apple replant disease (ARD). • T application obviously increased soil microbial diversity and richness, and regulated fungal community structure in replant soil. • The addition of biochar and humic acid significantly increased the apple seedlings growth and alleviate the ARD. [ABSTRACT FROM AUTHOR]

Amidst the global antimicrobial resistance (AMR) crisis, antibiotic resistance has permeated even the most remote environments. To understand the dissemination and evolution of AMR in minimally impacted ecosystems, the resistome and mobilome of wetlands across the Qinghai-Tibetan Plateau and its marginal regions were scrutinized using metagenomic sequencing techniques. The composition of wetland microbiomes exhibits significant variability, with dominant phyla including Proteobacteria, Actinobacteria, Bacteroidetes, and Verrucomicrobia. Notably, a substantial abundance of Antibiotic Resistance Genes (ARGs) and Mobile Genetic Elements (MGEs) was detected, encompassing 17 ARG types, 132 ARG subtypes, and 5 types of MGEs (Insertion Sequences, Insertions Sequences, Genomic Islands, Transposons, and Integrative Conjugative Elements). No significant variance was observed in the prevalence of resistome and mobilome across different wetland types (i.e., the Yellow River, other rivers, lakes, and marshes) (R =-0.5882, P =0.607). The co-occurrence of 74 ARG subtypes and 22 MGEs was identified, underscoring the pivotal role of MGEs in shaping ARG pools within the Qinghai-Tibetan Plateau wetlands. Metagenomic binning and analysis of assembled genomes (MAGs) revealed that 93 out of 206 MAGs harbored ARGs (45.15 %). Predominantly, Burkholderiales, Pseudomonadales, and Enterobacterales were identified as the primary hosts of these ARGs, many of which represent novel species. Notably, a substantial proportion of ARG-carrying MAGs also contained MGEs, reaffirming the significance of MGEs in AMR dissemination. Furthermore, utilizing the arg_ranker framework for risk assessment unveiled severe contamination of high-risk ARGs across most plateau wetlands. Moreover, some prevalent human pathogens were identified as potential hosts for these high-risk ARGs, posing substantial transmission risks. This study aims to investigate the prevalence of resistome and mobilome in wetlands, along with evaluating the risk posed by high-risk ARGs. Such insights are crucial for informing environmental protection strategies and facilitating the management of water resources on the Qinghai-Tibetan Plateau. [Display omitted] • Consistent resistome and mobilome prevalence observed in various wetlands types. • Human activities may drive pathogens emergence and ARGs distribution shifts. • High-risk ARGs pollution predominated in most Qinghai-Tibetan Plateau wetlands. [ABSTRACT FROM AUTHOR]

Jilin ginseng, Panax ginseng , is a valuable medicinal herb whose ginsenosides are its major bioactive components. The ginseng oxidosqualene cyclase (PgOSC) gene family is known to play important roles in ginsenoside biosynthesis, but few members of the gene family have been functionally studied. The PgOSC gene family has been studied by an integrated analysis of gene expression-ginsenoside content correlation, gene mutation-ginsenoside content association and gene co-expression network, followed by functional analysis through gene regulation. We found that five of the genes in the PgOSC gene family, including two published ginsenoside biosynthesis genes and three new genes, were involved in ginsenoside biosynthesis. Not only were the expressions of these genes significantly correlated with ginsenoside contents, but also their nucleotide mutations significantly influenced ginsenoside contents. These results were further verified by regulation analysis of the genes by methyl jasmonate (MeJA) in ginseng hairy roots. Four of these five PgOSC genes were mapped to the ginsenoside biosynthesis pathway. These PgOSC genes expressed differently across tissues, but relatively consistent across developmental stages. These PgOSC genes formed a single co-expression network with those published ginsenoside biosynthesis genes, further confirming their roles in ginsenoside biosynthesis. When the network varied, ginsenoside biosynthesis was significantly influenced, thus revealing the molecular mechanism of ginsenoside biosynthesis. At least five of the PgOSC genes, including the three newly identified and two published PgOSC genes, are involved in ginsenoside biosynthesis. These results provide gene resources and knowledge essential for enhanced research and applications of ginsenoside biosynthesis in ginseng. • Three new PgOSC genes involved in ginseng ginsenoside biosynthesis were identified. • Analyses of gene expression, mutation and network identify strong candidate genes. • Genes involved in ginsenoside biosynthesis are interacted in a form of network. • Variation of the gene network interactions greatly affects ginsenoside biosynthesis. [ABSTRACT FROM AUTHOR]

Adverse childhood experiences (ACEs) are associated with an increased risk of diabetes in adulthood. However, the potential mediational role of sleep duration in this association is unclear. A total of 116, 014 participants in the United States, from the Behavioral Risk Factor Surveillance System (BRFSS) survey in 2020 were involved in the study. The effects of ACE status, different ACEs, and ACE scores on short sleep duration were examined using binary logistic regression analysis, and the association of ACE status, different types of ACEs, and ACE scores with diabetes and the mediating role of short sleep duration were observed. Path analysis was used to investigate short sleep duration as pathways between different types of ACEs and diabetes in adulthood. For the different types of ACEs, alcohol abuse in the household (OR = 1.13, 95%CI 1.08; 1.18), witnessing domestic violence (OR = 1.17, 95%CI 1.11; 1.23), emotional abuse (OR = 1.11, 95%CI 1.06; 1.16), physical abuse (OR = 1.22, 95%CI 1.17; 1.28), sexual abuse (OR = 1.25, 95%CI 1.18; 1.32) and short sleep duration (OR = 1.26, 95%CI 1.21; 1.32) independently increased the odds of diabetes. There was also an indirect relationship between alcohol abuse in the household, witnessing domestic violence, physical abuse, sexual abuse, and diabetes via short sleep duration. Short sleep duration plays a partial mediating role between ACEs and diabetes, including alcohol abuse in the household, witnessing domestic violence, physical and sexual abuse. • Each type of ACE was positively associated with short sleep duration. • Four types of ACEs were positively associated with diabetes. • Short sleep duration was positively associated with diabetes. • Short sleep duration plays a partial mediating role between ACEs and diabetes. [ABSTRACT FROM AUTHOR]

Zwitterionic surface has been proven to be a good candidate for improving hemocompatible and antibiofouling properties. However, it can only passively repel the adsorption of microbes and is unable to kill the adherent or trapped microbes. The purpose of our study is to develop a facile method based on synergy “repel and kill” strategy and prepare dual antifouling and antibacterial surface. Herein, the poly(2-(dimethylamino) ethyl methacrylate) (PDMAEMA) was first constructed via surface-initiated activators regenerated by electron transfer atom transfer radical polymerization (ARGET-ATRP) method, followed by partial quaternization in order to form polycarboxybetaine and polysulfobetaine. The conversion rates of PDMAEMA to polyzwitterions were evaluated by X-ray photoelectron spectroscopy analysis (XPS). Surface characterizations by ATR-FTIR, XPS, and AFM demonstrated that zwitterionic polymer brushes were successfully grafted. The remained PDMAEMA(weak cationic) and formed zwitterions(neutral) endowed the surface with the synergetic antibacterial and antifouling properties. The resulting PET sheets showed outstanding antifouling property featured by the reduced adhesion of 3T3 fibroblast cells and E. coli . Additionally, these sheets displayed excellent hemocompatibility such as non-cytotoxicity, repelled protein adsorption, reduced platelet adhesion, and prolonged blood blotting time. These synergistic surfaces with neutral zwitterions and weak cations are promising for biomedical applications. [ABSTRACT FROM AUTHOR]

Perennial tree soil inhibits the growth of replanting apples, but the mechanism that underlies this inhibition is poorly understood. A total of 57 perennial tree soils were selected for the collection of soil samples in the Bohai Bay in May 2018. The severity of apple replant disease (ARD) for each soil was determined by calculating the rate of inhibition of growth replanted apple trees. A high-throughput sequencing analysis of internal transcribed spacer (ITS) was used to determine the soil fungal community. A correlation analysis was used to determine the relationship between the rate of inhibition of apple growth and soil factors. The degree of inhibition of plant growth varied substantially among the 57 soil samples examined. Different perennial tree soils have varying degrees of ARD. There was no significant difference in the composition of fungal community at the phylum level, but the genus level differed substantially. The abundances of Fusarium and Mortierella species and the contents of phloridin in the soil and soil organic matter (SOM) were significantly correlated with ARD severity. Structural equation modeling also emphasized that the degree of occurrence of ARD was directly or indirectly affected by Fusarium , Mortierella , phloridin and SOM. A correlation analysis can only be used as an indicator, and further research is merited to reveal how soil parameters affect ARD. [Display omitted] • The degree of apple replant disease varied in different orchards. • The Mortierella and soil organic matter were significantly negatively correlated with apple replant disease. • The Fusarium and phloridzin in the soil significantly positively correlated with apple replant disease. • There were no correlation between HN, AP, AK, pH and apple replant disease. [ABSTRACT FROM AUTHOR]

Cardiovascular health (CVH) is closely associated with various noncommunicable diseases (NCDs) and comorbidity; however, the influence of CVH on NCD multimorbidity was not fully elucidated. We aimed to examine the association between CVH using Life's Essential 8 (LE8) and NCD multimorbidity among adults, males, and females in the United States, conducting a cross-sectional analysis using data involving 24,445 participants from the National Health and Nutrition Examination Survey (NHANES) from 2007 to 2018. LE8 was categorized into low, moderate, and high CVH groups. Multivariate logistic regressions and restricted cubic spline regressions were used to estimate the association between LE8 and NCD multimorbidity. Overall, 6162 participants had NCD multimorbidity, of which 1168 (43.5%), 4343 (25.9%), and 651 (13.4%) had low, moderate, and high CVH, separately. After multivariable adjustment, LE8 was negatively associated with NCD multimorbidity among adults (odds ratio (OR) for per 1 standard deviation (SD) increase in LE8 and 95% confidence interval (CI), 0.67 (0.64, 0.69)), and the top 3 NCDs associated with CVH were emphysema, congestive heart failure, stroke, and the dose-response relationships between LE8 and NCD multimorbidity were observed among adults (overall P < 0.001). Similar patterns were also identified among males and females. Higher CVH measured by the LE8 score was associated with lower odds of NCD multimorbidity among adults, males, and females. [ABSTRACT FROM AUTHOR]

The photoelectrochemical (PEC) performance of ZnO is restricted by its low light absorption ability and high recombination rate of photogenerated carriers. In order to overcome these drawbacks, ZnO/CdS/CdSe heterostructures are prepared on Zn foil substrate using facile three-step methods containing hydrothermal growth, successive ionic layer adsorption reaction (SILAR) and modified chemical bath deposition (CBD). The effects of process parameters containing the number of SILAR cycles of CdS, sensitization sequence of CdS and CdSe, and precursors of CdSe on PEC performance of ZnO/CdS/CdSe heterostructures, and ZnO NRAs on PEC performance of CdS/CdSe co-sensitizer have been scrutinized. Through CdS and CdSe co-sensitization, a layer of CdS/CdSe nanofilm is conformally deposited on ZnO nanorod arrays (NRAs) observed by transmission electron microscopy (TEM). Both the visible-light absorption ability and separation efficiency of photogenerated carriers of ZnO NRAs are significantly enhanced evidenced by UV–vis diffuse reflectance absorption spectra, photoluminescence (PL) spectra and electrochemical impedance spectra. Due to the synergistic effect of ZnO NRAs and CdS/CdSe co-sensitizer, the ZnO/CdS/CdSe heterostructures with five SILAR cycles and one modified CBD cycle (ZnO-CdS5-CdSe) show efficient PEC properties with photocurrent density of 6.244 mA/cm2 at −0.2 V vs Ag/AgCl under light illumination of 100 mW/cm2, which are 57.28 and 4.73 times higher than those of pristine ZnO NRAs and CdS/CdSe clusters, respectively. Moreover, the photoconversion efficiency and incident photon to current conversion efficiency (IPCE) of the ZnO-CdS5-CdSe photoanode reach 4.381% and 80.92%, respectively. The heterostructures based on Zn foil substrate in this study can be a promising candidate for practical PEC application and other applications such as photocatalytic degradation and solar cell due to its low manufacturing cost, large-scale production and efficient PEC ability. [ABSTRACT FROM AUTHOR]

The integration of multiscale micro- and macroenvironment has been demonstrated as a critical role in designing biomimetic scaffolds for peripheral nerve tissue regeneration. While it remains a remarkable challenge for developing a biomimetic multiscale scaffold for enhancing 3D neuronal maturation and outgrowth. Herein, we present a 3D bioprinted multiscale scaffold based on a modular bioink for integrating the 3D micro- and macroenvironment of native nerve tissue. Gelatin methacryloyl (GelMA)/Chitosan Microspheres (GC-MSs) were prepared by a microfluidic approach, and the effect of these microspheres on enhancing neurite outgrowth and elongation of PC12 cells was demonstrated. The 3D multiscale composite scaffolds were bioprinted based on microspheres and hydrogel as the modular bioink. The co-culture of PC12 cells and RSC96 Schwann cells within these 3D biomimetic scaffolds were investigated to evaluate such a 3D multiscale environment for neurite outgrowth and Schwann cell proliferation. These results indicate that such multiscale composite scaffold with hydrogel microspheres provided a suitable 3D microenvironment for enhancing neurite growth, and the 3D printed hydrogel network provided a 3D macroenvironment mimicking the epineurium layer for Schwann cells proliferation and nerve cell organization, which is promising for the great potential applications in nerve tissue engineering. [ABSTRACT FROM AUTHOR]

Copper (Cu) and iron (Fe), the enzymatic cofactors required for various biochemical processes, have been recently linked to lipid metabolism. Adipose tissues play central roles in energy balance and whether copper and iron homeostasis is involved in cold-stimulated energy metabolism remains unknown. In this study, the Cu and Fe contents in interscapular brown adipose tissue (BAT) and subcutaneous white adipose tissue (subWAT) from mice at different developmental stages were measured. Our results revealed the dynamic changes of Cu and Fe levels during development, suggesting their potential roles in energy homeostasis. Furthermore, the significantly increased Cu and Fe contents and the markedly up-regulated CTR1 and ATP7A expression in acute cold-stimulated BAT indicates the involvement of both Cu and Fe in the BAT-mediated thermogenesis. Comparably, no change in the Cu and Fe levels in cold-stimulated subWAT was observed at the indicated time points, suggesting that both metals are not involved in the cellular process of cold-induced WAT browning. Taken together, these data demonstrate the induction of Cu and Fe in acute cold-stimulated BAT activation, thus providing the direct evidences of the involvement of copper and iron homeostasis in BAT-mediated non-shivering energy metabolism. [ABSTRACT FROM AUTHOR]

• The vaccination-related modules were screened by weighted gene co-expression network. • The proportions of immune cells were inferred by CIBERSORT algorithm. • LILRB2 was a crucial gene in Omicron infection. • The upregulation of LILRB2 might affect MHC class I protein binding. To investigate the effect conferred by vaccination and previous infection against SARS-CoV-2 infection in molecular level, weighted gene co-expression network analysis was applied to screen vaccination, prior infection and Omicron infection-related gene modules in 46 Omicron outpatients and 8 controls, and CIBERSORT algorithm was used to infer the proportions of 22 subsets of immune cells. 15 modules were identified, where the brown module showed positive correlations with Omicron infection (r = 0.35, P = 0.01) and vaccination (r = 0.62, P = 1 × 10−6). Enrichment analysis revealed that LILRB2 was the unique gene shared by both phosphatase binding and MHC class I protein binding. Pathways including "B cell receptor signaling pathway" and "Fc γ R-mediated phagocytosis" were enriched in the vaccinated samples of the highly correlated LILRB2. LILRB2 was also identified as the second hub gene through PPI network, after LCP2. In conclusion, attenuated LILRB2 transcription in PBMC might highlight a novel target in overcoming immune evasion and improving vaccination strategies. [ABSTRACT FROM AUTHOR]

To elucidate the key miRNAs and the signalling pathways that are involved in porcine oocyte maturation, we performed a deep sequencing analysis of the miRNAs of pig germinal vesicle (GV) oocytes and metaphase II (MII) oocytes. Seven differentially expressed (DE) miRNAs were identified and the expression levels of miR-21 and miR-27b-3p were further confirmed by QPCR analysis. The target genes of 7 DE miRNAs were predicted and subjected to pathway analysis. Interestingly, fatty acid metabolism and fatty acid biosynthesis were the top two significantly enriched molecular functions during oocyte maturation. Heat map, which was built with 7 DE miRNAs and the enriched the molecular functions, revealed that miR-21, miR-27b-3p, miR-10a-5p and miR-10b-5p were involved in fatty acid metabolism. In particular, the regulatory role of miR-27b-3p on peroxisome proliferator-activated receptor-γ (PPARγ) was confirmed by their inversed expression patterns in GV and MII oocytes and luciferase report assays. In addition, we observed that PPARγ agonist (rosiglitazone) treatment significantly enhanced porcine oocyte maturation rate and early embryo developmental competent. Taken together, our results demonstrated that miR-27b and its target, PPARγ, play the vital roles in pig oocyte maturation through regulating the fatty acid metabolism. These data increased our understanding of the regulatory gene networks in porcine oocyte maturation and development. [ABSTRACT FROM AUTHOR]

Fibroblast growth factor 9 (FGF9) has autocrine and paracrine functions in chondrogenesis osteogenesis, hair growth, and gonadal differentiation. We have expressed recombinant human FGF9 (rhFGF9) in the oil bodies of Arabidopsis thaliana via the floral dip method. The expression vector pOTB–rhFGF9 contained an oleosin–rhFGF9 fusion gene and a glufosinate resistance gene for selection. This plasmid was transformed into A. thaliana and expression of the fusion protein oleosin–rhFGF9 confirmed by SDS–PAGE and Western blotting. Furthermore, MTT assays demonstrated that the oil bodies expressed oleosin–rhFGF9 from the transgenic A. thaliana had a remarkable proliferation effect on NIH/3T3 cells. [ABSTRACT FROM AUTHOR]

There are two classic adipose tissues in mammals, white adipose tissue (WAT) and brown adipose tissue (BAT). It has been well known that browning of WAT can be induced by cold exposure. In this study, to identify the novel cold responsive key miRNAs that are involved in browning, mice were housed at 6 °C for 10 days, and deep sequencing of the miRNAs of WAT and BAT was performed. Our data showed that WAT and BAT displayed distinct expression profiles due to their different locations, morphology and biological function. A total of 27 BAT and 29 WAT differentially expressed (DE) miRNAs were identified in response to cold stimulation, respectively (fold change >2 and false discovery rate (FDR) <0.05), of which, 9 were overlapped in both adipose tissues. Furthermore, the potential target genes of the DE miRNAs from BAT and WAT were predicted computationally, and the KEGG pathway analysis revealed the enrichment pathways in cold stimulated adipose tissues. The expression pattern of miR-144-3p/Bmpr1b/Phlda1 and miR-146a-5p/Sphk2 were further measured by qPCR. Finally, we found that miR-146a-5p was significantly induced during the primary adipogenesis caused by BAT differentiation, whereas miR-144-3p was decreased. Our study identifies for the first time the novel miRNAs involved in browning of WAT by sequencing and expands the therapeutic approaches for combating metabolic diseases. [ABSTRACT FROM AUTHOR]

The soil fungus Fusarium spp, is the main cause of apple replant disease in China. The M9T337 apple rootstock was used to investigate the molecular responses to Fusarium solani infection using transcriptome analysis. We identified 667 differentially expressed genes in F. solani -infected rootstocks, of which 543 were up-regulated and 124 were down-regulated. These differentially expressed genes included receptor kinases, transcription factors, and genes involved in the production and transport of metabolites. In particular, secondary metabolites can enhance plant resistance to pathogens while P450s and UDP-glycosyltransferase play a unique roles in the defense response. • The molecular responses of apple root to Fusarium solani infection was reached using RNA-seq. • DEGs function was analyzed in different process of defense responses, such as receptor kinases, transcription factors, and genes involved in the production and transportation of metabolites. • The secondary metabolites, can enhance plant resistance to pathogen, are important in defence response. • P450s and UDP-glycosyltransferase plays an unique role in defence response. [ABSTRACT FROM AUTHOR]

Liver X receptor (LXR) activation can achieve satisfactory anti-atherosclerotic activity, but can also lead to the development of fatty liver and hypertriglyceridemia. In contrast, Notch inhibition can suppress both atherosclerosis and the hepatic accumulation of lipids. In the present study, we sought to assess whether combining LXR ligand agonists (T317) with Notch receptor inhibitors (DAPT) would lead to enhanced anti-atherosclerotic activity while overcoming the adverse events associated with LXR ligand agonist therapy. The impact of the combined T317 + DAPT therapeutic regimen on atherosclerosis, fatty liver development, and hypertriglyceridemia was assessed using ApoE deficient (ApoE−/−) mice. The results of this analysis suggested that DAPT was able to improve the anti-atherosclerotic activity of T317 without reducing the stability of lesion plaques while simultaneously reducing blood lipids in treated ApoE−/− mice. This combination T317 + DAPT treatment was also linked with a significant upregulation of ABCA1 and the stimulation of reverse cholesterol transport (RCT), as well as with decreases in the levels of intercellular cell adhesion molecule-1 (ICAM-1) and p-p65, and with altered M1/M2 macrophage proportions within atherosclerotic plaques. Importantly, DAPT was also able to reduce T317-mediated lipid accumulation within the liver owing to its ability to reduce SREBP-1 expression while simultaneously increasing that of Pi-AMPKα and PPARα. Together, our results suggest that administering Notch receptor inhibitors to ApoE−/− mice may be an effective means of enhancing the anti-atherosclerotic activity of LXR ligand agonists while simultaneously limiting associated fatty liver and hypertriglyceridemia development in these animals. Unlabelled Image • Inhibition of Notch1 enhances the anti-atherosclerotic effects of LXR agonists. • Inhibition of Notch1 decreases LXR agonists-induced fatty liver. • LXR agonist plus Notch1 inhibitor may represent a therapy on atherosclerosis. [ABSTRACT FROM AUTHOR]

Bacterial leaf streak of rice (BLS), caused by Xanthomonas oryzae pv. oryzicola (Xoc), is an increasingly serious disease in southwestern China. This study aimed to evaluate the response of the native rice variety Hongyou-4 (HY4) to two different transcription activator-like effectors (TALEs) genotypes of Xoc. HY4 was significantly susceptible to Xoc strain 13T19 and resistant to Xoc strain YM15. Transcriptomic analysis of HY4 leaves inoculated with the two Xoc TALEs genotypes revealed 1339 and 1219 differentially expressed genes (DEGs) in rice inoculated with Xoc strain 13T19 (HY.Q) and Xoc strain YM15 (HY.R), respectively, compared to the control. Quantitative real-time PCR (qRT-PCR) for expression of 10 randomly selected genes was used to verify the RNA-Seq data. Gene ontology (GO) analysis of the transcriptomic data showed DEGs of defense-related genes were predominantly assigned to 11 GO terms, with nine terms showing differential expression in HY4 after inoculation with the two Xoc genotypes. KEGG pathway clustering analysis revealed DEGs involved in plant-pathogen interactions and secondary metabolite pathways of phenylpropanoid biosynthesis were down-regulated in HY.Q compared to HY.R. Four transcription factors including bZIP, GLK, MADS, and MYB families, three resistance genes, and the TalAM2 effector target gene OsSWEET13, were differentially expressed in HY4 inoculated with the two Xoc TALEs genotypes. These data clarify the mechanism of interactions between rice and different TALE genotypes of Xoc , and can help reveal disease-related metabolic pathways, molecular regulatory networks, and candidate genes involved in rice responses to TALEs of Xoc. • Transcriptome profiles of a rice HY4 responding to two Xoc strains 13T19 and YM15 was described. • A local rice variety Hongyou-4, which is of good yield and quality was used. • TAL gene numbers in these two strains are different, implying TAL genes virulence in rice. • We identified 4 transcription factors (TFs), 3 resistance gene and the TalAM2 effector target gene OsSWEET13. • The mechanism of interactions between rice and different TALEs genotypes Xoc was revealed. [ABSTRACT FROM AUTHOR]