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High $ZT$ value and large Seebeck coefficient have been reported in the nanostructured Fe-doped Si-Ge alloys. In this work, the large Seebeck coefficient in Fe-doped Si-Ge systems is qualitatively reproduced from the computed electronic density of states, where a hybrid functional, HSE06, is used for an exchange-correlation functional, as well as a special quasi-random structure (SQS) for a disordered atomic configuration. Furthermore, by replacing Fe with other transition metals, such as Mn, Co, Ni, Cu, Zn, and Au, a better dopant that produces a larger Seebeck coefficient in Si-Ge alloy systems is explored., Comment: 6 pages

The phase separation behaviors from the single B2 ordered phase into the two separate B2 and L2$_1$ ordered phases in the X-Al-Ti (X: Fe, Co, and Ni) alloys are analyzed using the cluster variation method (CVM) with the interaction energies evaluated from the electronic band structure calculations. The cubic approximation of the CVM is employed for the X$_2$Al$_{2-x}$Ti$_x$ ($0 \leq x \leq 2$) alloys limiting an interchange between Al and Ti atoms on the $\alpha$- and $\beta$-sublattices of the L2$_1$ ordered structure with the X atoms fixed on the $\gamma$-sublattice. The phase stabilities of the B2 and L2$_1$ structures are examined, and the phase diagrams at the pseudo-binary section, XAl-XTi, are determined. The two-phase regions of B2 and L2$_1$ phases, i.e., phase separation behavior, are successfully produced in both Co- and Ni-Al-Ti alloy systems, whereas no phase separation is predicted in the Fe-Al-Ti alloy. The origin of the phase separation in the Co- and Ni-Al-Ti alloys is, respectively, attributed to the mechanical instability and the combination of mechanical instability and chemical repulsions of unlike pairs., Comment: 8 pages, 5 figures

In the field of bioimaging, an important part of analyzing the motion of objects is tracking. We propose a method that applies the Sinkhorn distance for solving the optimal transport problem to track objects. The advantage of this method is that it can flexibly incorporate various assumptions in tracking as a cost matrix. First, we extend the Sinkhorn distance from two dimensions to three dimensions. Using this three-dimensional distance, we compare the performance of two types of tracking technique, namely tracking that associates objects that are close to each other, which conventionally uses the nearest-neighbor method, and tracking that assumes that the object is moving at constant velocity, using three types of simulation data. The results suggest that when tracking objects moving at constant velocity, our method is superior to conventional nearest-neighbor tracking as long as the added noise is not excessively large. We show that the Sinkhorn method can be applied effectively to object tracking. Our simulation data analysis suggests that when objects are moving at constant velocity, our method, which sets acceleration as a cost, outperforms the traditional nearest-neighbor method in terms of tracking objects. To apply the proposed method to real bioimaging data, it is necessary to set an appropriate cost indicator based on the movement features., Comment: 12 pages, 7 figures, 2 tables

Cluster variation method (CVM) and path probability method (PPM) have generally been employed to study replacive phase transitions in alloy systems. Recently, displacive phase transitions have been explored within the realm of replacive phase transition in the CVM theoretical framework by viewing displaced atoms as different atomic species, i.e., by converting a freedom of atomic displacement to a configurational freedom. The same methodology is applied to the PPM calculations in this work, and the kinetics of displacive phase transition from tetragonal to cubic phases in ZrO2 are investigated as well as their equilibrium states., Comment: 5 pages, 4 figures

The path probability method (PPM), which is a natural extension of the cluster variation method (CVM) to a time domain, has been employed in a relaxation process of atomic configurations in alloy systems. Although the vacancy mechanism is the main atomic migration process in an alloy system, most studies of PPM have used the spin flipping mechanism (or the direct exchange mechanism) because of the huge computational burden imposed by the vacancy mechanism. In this paper the computational problem is circumvented by treating various path variables in the PPM as cluster probabilities in the CVM, and the vacancy mechanism is explicitly taken into account in the theoretical framework. The method is employed to explore the relaxation process in a Ni3Al ordered phase within the tetrahedron approximation, and the effect of vacancy concentration is investigated., Comment: 6 pages, 4 figures

The continuous displacement cluster variation method (CDCVM) has introduced local atomic displacements into the theoretical framework of the cluster variation method (CVM) by viewing an atom displaced from a Bravais lattice point as a particular atomic species located at the lattice point. This idea of conversion from a freedom of local displacements into configurational freedom is extended in this paper to magnetic freedoms. Various magnitudes of local magnetic moments are considered, as well as two spin directions, on up-spins and down-spins. The approach is applied to pure Ni and its Curie temperature is explored with the entropy formula of the tetrahedron approximation in the CVM, using the first-nearest-neighbor pair interaction energies extracted from the total energies of various spin configurations, which are estimated from electronic-structure calculations., Comment: 18 pages, 10 figures

Steepest-entropy-ascent quantum thermodynamics, or SEAQT, is a unified approach of quantum mechanics and thermodynamics that avoids many of the inconsistencies that can arise between the two theories. Given a set of energy levels, i.e., energy eigenstructure, accessible to a given physical system, SEAQT predicts the unique kinetic path from any initial non-equilibrium state to stable equilibrium by solving a master equation that directs the system along the path of steepest entropy ascent. There are no intrinsic limitations on the length and time scales the method can treat so it is well-suited for calculations where the dynamics over multiple spacial scales need to be taken into account within a single framework. In this paper, the theoretical framework and its advantages are described, and several applications are presented to illustrate the use of the SEAQT equation of motion and the construction of a simplified, reduced-order, energy eigenstructure., Comment: 18 pages

The kinetics of ordering and concurrent ordering and clustering is analyzed with an equation of motion initially developed to account for dissipative processes in quantum systems. A simplified energy eigenstructure, or pseudo-eigenstructure, is constructed from a static concentration wave method to describe the configuration-dependent energy for atomic ordering and clustering in a binary alloy. This pseudo-eigenstructure is used in conjunction with an equation of motion that follows steepest entropy ascent to calculate the kinetic path that leads to ordering and clustering in a series of hypothetical alloys. By adjusting the thermodynamic solution parameters, it is demonstrated that the model can predict the stable equilibrium state as well as the unique thermodynamic path and kinetics of continuous/discontinuous ordering and concurrent processes of simultaneous ordering and phase separation., Comment: 10 pages

The decomposition kinetics of a solid-solution into separate phases are analyzed with an equation of motion initially developed to account for dissipative processes in quantum systems. This equation and the steepest-entropy-ascent quantum thermodynamic framework of which it is a part make it possible to track kinetic processes in systems in non-equilibrium, while retaining the framework of classical equilibrium thermodynamics. The general equation of motion is particularized for the case of the decomposition of a binary alloy, and a solution model is used to build an approximate energy eigenstructure, or pseudo-eigenstructure, for the alloy system. This equation is then solved with the pseudo-eigenstructure to obtain a unique reaction path and the decomposition kinetics of the alloy. For a hypothetical solid-solution with a miscibility gap at low temperatures, the conditions under which this framework predicts a continuous transformation path (spinodal decomposition) or a discontinuous one (nucleation and growth) are demonstrated., Comment: 12 pages

The magnetization of body-centered cubic iron at low temperatures is calculated with the steepest-entropy-ascent quantum thermodynamics (SEAQT) framework. This framework assumes that a thermodynamic property in an isolated system traces the path through state space with the greatest entropy production. Magnetization is calculated from the expected value of a thermodynamic ensemble of quantized spin waves based on the Heisenberg spin model applied to an ensemble of coupled harmonic oscillators. A realistic energy landscape is obtained from a magnon dispersion relation calculated using spin-density-functional-theory. The equilibrium magnetization as well as the evolution of magnetization from a non-equilibrium state to equilibrium are calculated from the path of steepest entropy ascent determined from the SEAQT equation of motion in state space. The framework makes it possible to model the temperature- and time-dependence of magnetization without a detailed description of magnetic damping. The approach is also used to define intensive properties (temperature and magnetic field strength) that are fundamentally, i.e., canonically or grand canonically, valid for any non-equilibrium state. Given the assumed magnon dispersion relation, the SEAQT framework is used to calculate the equilibrium magnetization at different temperatures and external magnetic fields and the results are shown to closely agree with experiment for temperatures less than 500 K. The time-dependent evolution of magnetization from different initial states and interactions with a reservoir is also predicted., Comment: 11 pages

Steepest-entropy-ascent quantum thermodynamics (SEAQT) is an intriguing approach that describes equilibrium and dynamic processes in a self-consistent way. The applicability is limited to mainly gas phases because of a complex eigenstructure (eigenvalues and eigenfunctions) of solid or liquid phases. In this contribution, the SEAQT modeling is extended to a condensed phase by constructing a simplified eigenstructure (so-called pseudo-eigenstructure), and the applicability is demonstrated by calculating the thermal expansion of metallic silver in three cases: (a) at stable equilibrium, (b) along three irreversible paths from an initial nonequilibrium state to stable equilibrium, and (c) along an irreversible path between two stable equilibrium states. The SEAQT framework with an anharmonic pseudo-eigenstructure predicts reasonable values for equilibrium thermal expansion. For the irreversible cases considered, the SEAQT approach makes it possible to predict the time-dependence of lattice relaxations from the initial state to the final state., Comment: 11 pages, 8 figures