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This work addresses how to efficiently classify challenging histopathology images, such as gigapixel whole-slide images for cancer diagnostics with image-level annotation. We use images with annotated tumor regions to identify a set of tumor patches and a set of benign patches in a cancerous slide. Due to the variable nature of region of interest the tumor positive regions may refer to an extreme minority of the pixels. This creates an important problem during patch-level classification, where the majority of patches from an image labeled as 'cancerous' are actually tumor-free. This problem is different from semantic segmentation which associates a label to every pixel in an image, because after patch extraction we are only dealing with patch-level labels.Most existing approaches address the data imbalance issue by mitigating the data shortage in minority classes in order to prevent the model from being dominated by the majority classes. These methods include data re-sampling, loss re-weighting, margin modification, and data augmentation. In this work, we mitigate the patch-level class imbalance problem by taking a divide-and-conquer approach. First, we partition the data into sub-groups, and define three separate classification sub-problems based on these data partitions. Then, using an information-theoretic cluster-based sampling of deep image patch features, we sample discriminative patches from the sub-groups. Using these sampled patches, we build corresponding deep models to solve the new classification sub-problems. Finally, we integrate information learned from the respective models to make a final decision on the patches. Our result shows that the proposed approach can perform competitively using a very low percentage of the available patches in a given whole-slide image., Comment: 12 pages, 2 figures, Accepted paper for the 27th International Conference on Pattern Recognition (ICPR) 2024

Microscopy data collections are becoming larger and more frequent. Accurate and precise quantitative analysis tools like cell instance segmentation are necessary to benefit from them. This is challenging due to the variability in the data, which requires retraining the segmentation model to maintain high accuracy on new collections. This is needed especially for segmenting cells with elongated and non-convex morphology like bacteria. We propose to reduce the amount of annotation and computing power needed for retraining the model by introducing a few-shot domain adaptation approach that requires annotating only one to five cells of the new data to process and that quickly adapts the model to maintain high accuracy. Our results show a significant boost in accuracy after adaptation to very challenging bacteria datasets., Comment: ISBI 2024

Institutional bias can impact patient outcomes, educational attainment, and legal system navigation. Written records often reflect bias, and once bias is identified; it is possible to refer individuals for training to reduce bias. Many machine learning tools exist to explore text data and create predictive models that can search written records to identify real-time bias. However, few previous studies investigate large language model embeddings and geometric models of biased text data to understand geometry's impact on bias modeling accuracy. To overcome this issue, this study utilizes the RedditBias database to analyze textual biases. Four transformer models, including BERT and RoBERTa variants, were explored. Post-embedding, t-SNE allowed two-dimensional visualization of data. KNN classifiers differentiated bias types, with lower k-values proving more effective. Findings suggest BERT, particularly mini BERT, excels in bias classification, while multilingual models lag. The recommendation emphasizes refining monolingual models and exploring domain-specific biases.

Temporal action detection (TAD) involves the localization and classification of action instances within untrimmed videos. While standard TAD follows fully supervised learning with closed-set setting on large training data, recent zero-shot TAD methods showcase the promising open-set setting by leveraging large-scale contrastive visual-language (ViL) pretrained models. However, existing zero-shot TAD methods have limitations on how to properly construct the strong relationship between two interdependent tasks of localization and classification and adapt ViL model to video understanding. In this work, we present ZEETAD, featuring two modules: dual-localization and zero-shot proposal classification. The former is a Transformer-based module that detects action events while selectively collecting crucial semantic embeddings for later recognition. The latter one, CLIP-based module, generates semantic embeddings from text and frame inputs for each temporal unit. Additionally, we enhance discriminative capability on unseen classes by minimally updating the frozen CLIP encoder with lightweight adapters. Extensive experiments on THUMOS14 and ActivityNet-1.3 datasets demonstrate our approach's superior performance in zero-shot TAD and effective knowledge transfer from ViL models to unseen action categories.

Precise 3D environmental mapping is pivotal in robotics. Existing methods often rely on predefined concepts during training or are time-intensive when generating semantic maps. This paper presents Open-Fusion, a groundbreaking approach for real-time open-vocabulary 3D mapping and queryable scene representation using RGB-D data. Open-Fusion harnesses the power of a pre-trained vision-language foundation model (VLFM) for open-set semantic comprehension and employs the Truncated Signed Distance Function (TSDF) for swift 3D scene reconstruction. By leveraging the VLFM, we extract region-based embeddings and their associated confidence maps. These are then integrated with 3D knowledge from TSDF using an enhanced Hungarian-based feature-matching mechanism. Notably, Open-Fusion delivers outstanding annotation-free 3D segmentation for open-vocabulary without necessitating additional 3D training. Benchmark tests on the ScanNet dataset against leading zero-shot methods highlight Open-Fusion's superiority. Furthermore, it seamlessly combines the strengths of region-based VLFM and TSDF, facilitating real-time 3D scene comprehension that includes object concepts and open-world semantics. We encourage the readers to view the demos on our project page: https://uark-aicv.github.io/OpenFusion

Image segmentation remains a pivotal component in medical image analysis, aiding in the extraction of critical information for precise diagnostic practices. With the advent of deep learning, automated image segmentation methods have risen to prominence, showcasing exceptional proficiency in processing medical imagery. Motivated by the Segment Anything Model (SAM)-a foundational model renowned for its remarkable precision and robust generalization capabilities in segmenting 2D natural images-we introduce SAM3D, an innovative adaptation tailored for 3D volumetric medical image analysis. Unlike current SAM-based methods that segment volumetric data by converting the volume into separate 2D slices for individual analysis, our SAM3D model processes the entire 3D volume image in a unified approach. Extensive experiments are conducted on multiple medical image datasets to demonstrate that our network attains competitive results compared with other state-of-the-art methods in 3D medical segmentation tasks while being significantly efficient in terms of parameters. Code and checkpoints are available at https://github.com/UARK-AICV/SAM3D., Comment: Accepted at ISBI 2024

Recently, deep learning has shown to be effective for Electroencephalography (EEG) decoding tasks. Yet, its performance can be negatively influenced by two key factors: 1) the high variance and different types of corruption that are inherent in the signal, 2) the EEG datasets are usually relatively small given the acquisition cost, annotation cost and amount of effort needed. Data augmentation approaches for alleviation of this problem have been empirically studied, with augmentation operations on spatial domain, time domain or frequency domain handcrafted based on expertise of domain knowledge. In this work, we propose a principled approach to perform dynamic evolution on the data for improvement of decoding robustness. The approach is based on distributionally robust optimization and achieves robustness by optimizing on a family of evolved data distributions instead of the single training data distribution. We derived a general data evolution framework based on Wasserstein gradient flow (WGF) and provides two different forms of evolution within the framework. Intuitively, the evolution process helps the EEG decoder to learn more robust and diverse features. It is worth mentioning that the proposed approach can be readily integrated with other data augmentation approaches for further improvements. We performed extensive experiments on the proposed approach and tested its performance on different types of corrupted EEG signals. The model significantly outperforms competitive baselines on challenging decoding scenarios., Comment: ECAI 2023

ChatGPT is a large language model (LLM) created by OpenAI that has been carefully trained on a large amount of data. It has revolutionized the field of natural language processing (NLP) and has pushed the boundaries of LLM capabilities. ChatGPT has played a pivotal role in enabling widespread public interaction with generative artificial intelligence (GAI) on a large scale. It has also sparked research interest in developing similar technologies and investigating their applications and implications. In this paper, our primary goal is to provide a concise survey on the current lines of research on ChatGPT and its evolution. We considered both the glass box and black box views of ChatGPT, encompassing the components and foundational elements of the technology, as well as its applications, impacts, and implications. The glass box approach focuses on understanding the inner workings of the technology, and the black box approach embraces it as a complex system, and thus examines its inputs, outputs, and effects. This paves the way for a comprehensive exploration of the technology and provides a road map for further research and experimentation. We also lay out essential foundational literature on LLMs and GAI in general and their connection with ChatGPT. This overview sheds light on existing and missing research lines in the emerging field of LLMs, benefiting both public users and developers. Furthermore, the paper delves into the broad spectrum of applications and significant concerns in fields such as education, research, healthcare, finance, etc., Comment: The paper was uploaded in error, before it was ready for submission. The paper requires a deep revision, and significant changes and modifications before uploading to the archive

Self-supervised learning (SSL) is now a serious competitor for supervised learning, even though it does not require data annotation. Several baselines have attempted to make SSL models exploit information about data distribution, and less dependent on the augmentation effect. However, there is no clear consensus on whether maximizing or minimizing the mutual information between representations of augmentation views practically contribute to improvement or degradation in performance of SSL models. This paper is a fundamental work where, we investigate role of mutual information in SSL, and reformulate the problem of SSL in the context of a new perspective on mutual information. To this end, we consider joint mutual information from the perspective of partial information decomposition (PID) as a key step in \textbf{reliable multivariate information measurement}. PID enables us to decompose joint mutual information into three important components, namely, unique information, redundant information and synergistic information. Our framework aims for minimizing the redundant information between views and the desired target representation while maximizing the synergistic information at the same time. Our experiments lead to a re-calibration of two redundancy reduction baselines, and a proposal for a new SSL training protocol. Extensive experimental results on multiple datasets and two downstream tasks show the effectiveness of this framework.

Current approaches to novelty or anomaly detection are based on deep neural networks. Despite their effectiveness, neural networks are also vulnerable to imperceptible deformations of the input data. This is a serious issue in critical applications, or when data alterations are generated by an adversarial attack. While this is a known problem that has been studied in recent years for the case of supervised learning, the case of novelty detection has received very limited attention. Indeed, in this latter setting the learning is typically unsupervised because outlier data is not available during training, and new approaches for this case need to be investigated. We propose a new prior that aims at learning a robust likelihood for the novelty test, as a defense against attacks. We also integrate the same prior with a state-of-the-art novelty detection approach. Because of the geometric properties of that approach, the resulting robust training is computationally very efficient. An initial evaluation of the method indicates that it is effective at improving performance with respect to the standard models in the absence and presence of attacks., Comment: CVPR Workshop on Computer Vision in the Wild, 2023

Keypoint detection and matching is a fundamental task in many computer vision problems, from shape reconstruction, to structure from motion, to AR/VR applications and robotics. It is a well-studied problem with remarkable successes such as SIFT, and more recent deep learning approaches. While great robustness is exhibited by these techniques with respect to noise, illumination variation, and rigid motion transformations, less attention has been placed on image distortion sensitivity. In this work, we focus on the case when this is caused by the geometry of the cameras used for image acquisition, and consider the keypoint detection and matching problem between the hybrid scenario of a fisheye and a projective image. We build on a state-of-the-art approach and derive a self-supervised procedure that enables training an interest point detector and descriptor network. We also collected two new datasets for additional training and testing in this unexplored scenario, and we demonstrate that current approaches are suboptimal because they are designed to work in traditional projective conditions, while the proposed approach turns out to be the most effective., Comment: CVPR Workshop on Omnidirectional Computer Vision, 2023

Despite recent significant progress, Multi-Object Tracking (MOT) faces limitations such as reliance on prior knowledge and predefined categories and struggles with unseen objects. To address these issues, Generic Multiple Object Tracking (GMOT) has emerged as an alternative approach, requiring less prior information. However, current GMOT methods often rely on initial bounding boxes and struggle to handle variations in factors such as viewpoint, lighting, occlusion, and scale, among others. Our contributions commence with the introduction of the \textit{Referring GMOT dataset} a collection of videos, each accompanied by detailed textual descriptions of their attributes. Subsequently, we propose $\mathtt{Z-GMOT}$, a cutting-edge tracking solution capable of tracking objects from \textit{never-seen categories} without the need of initial bounding boxes or predefined categories. Within our $\mathtt{Z-GMOT}$ framework, we introduce two novel components: (i) $\mathtt{iGLIP}$, an improved Grounded language-image pretraining, for accurately detecting unseen objects with specific characteristics. (ii) $\mathtt{MA-SORT}$, a novel object association approach that adeptly integrates motion and appearance-based matching strategies to tackle the complex task of tracking objects with high similarity. Our contributions are benchmarked through extensive experiments conducted on the Referring GMOT dataset for GMOT task. Additionally, to assess the generalizability of the proposed $\mathtt{Z-GMOT}$, we conduct ablation studies on the DanceTrack and MOT20 datasets for the MOT task. Our dataset, code, and models are released at: https://fsoft-aic.github.io/Z-GMOT.

Automated cellular instance segmentation is a process utilized for accelerating biological research for the past two decades, and recent advancements have produced higher quality results with less effort from the biologist. Most current endeavors focus on completely cutting the researcher out of the picture by generating highly generalized models. However, these models invariably fail when faced with novel data, distributed differently than the ones used for training. Rather than approaching the problem with methods that presume the availability of large amounts of target data and computing power for retraining, in this work we address the even greater challenge of designing an approach that requires minimal amounts of new annotated data as well as training time. We do so by designing specialized contrastive losses that leverage the few annotated samples very efficiently. A large set of results show that 3 to 5 annotations lead to models with accuracy that: 1) significantly mitigate the covariate shift effects; 2) matches or surpasses other adaptation methods; 3) even approaches methods that have been fully retrained on the target distribution. The adaptation training is only a few minutes, paving a path towards a balance between model performance, computing requirements and expert-level annotation needs., Comment: Accepted in WACV 2023

Person re-identification is a challenging task because of the high intra-class variance induced by the unrestricted nuisance factors of variations such as pose, illumination, viewpoint, background, and sensor noise. Recent approaches postulate that powerful architectures have the capacity to learn feature representations invariant to nuisance factors, by training them with losses that minimize intra-class variance and maximize inter-class separation, without modeling nuisance factors explicitly. The dominant approaches use either a discriminative loss with margin, like the softmax loss with the additive angular margin, or a metric learning loss, like the triplet loss with batch hard mining of triplets. Since the softmax imposes feature normalization, it limits the gradient flow supervising the feature embedding. We address this by joining the losses and leveraging the triplet loss as a proxy for the missing gradients. We further improve invariance to nuisance factors by adding the discriminative task of predicting attributes. Our extensive evaluation highlights that when only a holistic representation is learned, we consistently outperform the state-of-the-art on the three most challenging datasets. Such representations are easier to deploy in practical systems. Finally, we found that joining the losses removes the requirement for having a margin in the softmax loss while increasing performance.

The pandemic of these very recent years has led to a dramatic increase in people wearing protective masks in public venues. This poses obvious challenges to the pervasive use of face recognition technology that now is suffering a decline in performance. One way to address the problem is to revert to face recovery methods as a preprocessing step. Current approaches to face reconstruction and manipulation leverage the ability to model the face manifold, but tend to be generic. We introduce a method that is specific for the recovery of the face image from an image of the same individual wearing a mask. We do so by designing a specialized GAN inversion method, based on an appropriate set of losses for learning an unmasking encoder. With extensive experiments, we show that the approach is effective at unmasking face images. In addition, we also show that the identity information is preserved sufficiently well to improve face verification performance based on several face recognition benchmark datasets.

Self supervised learning (SSL) has become a very successful technique to harness the power of unlabeled data, with no annotation effort. A number of developed approaches are evolving with the goal of outperforming supervised alternatives, which have been relatively successful. One main issue in SSL is robustness of the approaches under different settings. In this paper, for the first time, we recognize the fundamental limits of SSL coming from the use of a single-supervisory signal. To address this limitation, we leverage the power of uncertainty representation to devise a robust and general standard hierarchical learning/training protocol for any SSL baseline, regardless of their assumptions and approaches. Essentially, using the information bottleneck principle, we decompose feature learning into a two-stage training procedure, each with a distinct supervision signal. This double supervision approach is captured in two key steps: 1) invariance enforcement to data augmentation, and 2) fuzzy pseudo labeling (both hard and soft annotation). This simple, yet, effective protocol which enables cross-class/cluster feature learning, is instantiated via an initial training of an ensemble of models through invariance enforcement to data augmentation as first training phase, and then assigning fuzzy labels to the original samples for the second training phase. We consider multiple alternative scenarios with double supervision and evaluate the effectiveness of our approach on recent baselines, covering four different SSL paradigms, including geometrical, contrastive, non-contrastive, and hard/soft whitening (redundancy reduction) baselines. Extensive experiments under multiple settings show that the proposed training protocol consistently improves the performance of the former baselines, independent of their respective underlying principles., Comment: Accepted to WACV 2023

Conventional active learning (AL) frameworks aim to reduce the cost of data annotation by actively requesting the labeling for the most informative data points. However, introducing AL to data hungry deep learning algorithms has been a challenge. Some proposed approaches include uncertainty-based techniques, geometric methods, implicit combination of uncertainty-based and geometric approaches, and more recently, frameworks based on semi/self supervised techniques. In this paper, we address two specific problems in this area. The first is the need for efficient exploitation/exploration trade-off in sample selection in AL. For this, we present an innovative integration of recent progress in both uncertainty-based and geometric frameworks to enable an efficient exploration/exploitation trade-off in sample selection strategy. To this end, we build on a computationally efficient approximate of Thompson sampling with key changes as a posterior estimator for uncertainty representation. Our framework provides two advantages: (1) accurate posterior estimation, and (2) tune-able trade-off between computational overhead and higher accuracy. The second problem is the need for improved training protocols in deep AL. For this, we use ideas from semi/self supervised learning to propose a general approach that is independent of the specific AL technique being used. Taken these together, our framework shows a significant improvement over the state-of-the-art, with results that are comparable to the performance of supervised-learning under the same setting. We show empirical results of our framework, and comparative performance with the state-of-the-art on four datasets, namely, MNIST, CIFAR10, CIFAR100 and ImageNet to establish a new baseline in two different settings., Comment: ACCV 2022

The study of signatures of aging in terms of genomic biomarkers can be uniquely helpful in understanding the mechanisms of aging and developing models to accurately predict the age. Prior studies have employed gene expression and DNA methylation data aiming at accurate prediction of age. In this line, we propose a new framework for human age estimation using information from human dermal fibroblast gene expression data. First, we propose a new spatial representation as well as a data augmentation approach for gene expression data. Next in order to predict the age, we design an architecture of neural network and apply it to this new representation of the original and augmented data, as an ensemble classification approach. Our experimental results suggest the superiority of the proposed framework over state-of-the-art age estimation methods using DNA methylation and gene expression data., Comment: 8 pages, 5 figures, This paper is accepted to 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Plant species identification in the wild is a difficult problem in part due to the high variability of the input data, but also because of complications induced by the long-tail effects of the datasets distribution. Inspired by the most recent fine-grained visual classification approaches which are based on attention to mitigate the effects of data variability, we explore the idea of using object detection as a form of attention. We introduce a bottom-up approach based on detecting plant organs and fusing the predictions of a variable number of organ-based species classifiers. We also curate a new dataset with a long-tail distribution for evaluating plant organ detection and organ-based species identification, which is publicly available., Comment: 6 pages, 4 figures. Accepted to the CVPR 2021 FGVC Workshop. Models, testing code, and link to dataset can be found at https://github.com/wvuvl/DARMA

Autoencoder networks are unsupervised approaches aiming at combining generative and representational properties by learning simultaneously an encoder-generator map. Although studied extensively, the issues of whether they have the same generative power of GANs, or learn disentangled representations, have not been fully addressed. We introduce an autoencoder that tackles these issues jointly, which we call Adversarial Latent Autoencoder (ALAE). It is a general architecture that can leverage recent improvements on GAN training procedures. We designed two autoencoders: one based on a MLP encoder, and another based on a StyleGAN generator, which we call StyleALAE. We verify the disentanglement properties of both architectures. We show that StyleALAE can not only generate 1024x1024 face images with comparable quality of StyleGAN, but at the same resolution can also produce face reconstructions and manipulations based on real images. This makes ALAE the first autoencoder able to compare with, and go beyond the capabilities of a generator-only type of architecture.

Novelty detection is the problem of identifying whether a new data point is considered to be an inlier or an outlier. We assume that training data is available to describe only the inlier distribution. Recent approaches primarily leverage deep encoder-decoder network architectures to compute a reconstruction error that is used to either compute a novelty score or to train a one-class classifier. While we too leverage a novel network of that kind, we take a probabilistic approach and effectively compute how likely is that a sample was generated by the inlier distribution. We achieve this with two main contributions. First, we make the computation of the novelty probability feasible because we linearize the parameterized manifold capturing the underlying structure of the inlier distribution, and show how the probability factorizes and can be computed with respect to local coordinates of the manifold tangent space. Second, we improved the training of the autoencoder network. An extensive set of results show that the approach achieves state-of-the-art results on several benchmark datasets.

The quest for deeper understanding of biological systems has driven the acquisition of increasingly larger multidimensional image datasets. Inspecting and manipulating data of this complexity is very challenging in traditional visualization systems. We developed syGlass, a software package capable of visualizing large scale volumetric data with inexpensive virtual reality head-mounted display technology. This allows leveraging stereoscopic vision to significantly improve perception of complex 3D structures, and provides immersive interaction with data directly in 3D. We accomplished this by developing highly optimized data flow and volume rendering pipelines, tested on datasets up to 16TB in size, as well as tools available in a virtual reality GUI to support advanced data exploration, annotation, and cataloguing.

This work provides a framework for addressing the problem of supervised domain adaptation with deep models. The main idea is to exploit adversarial learning to learn an embedded subspace that simultaneously maximizes the confusion between two domains while semantically aligning their embedding. The supervised setting becomes attractive especially when there are only a few target data samples that need to be labeled. In this few-shot learning scenario, alignment and separation of semantic probability distributions is difficult because of the lack of data. We found that by carefully designing a training scheme whereby the typical binary adversarial discriminator is augmented to distinguish between four different classes, it is possible to effectively address the supervised adaptation problem. In addition, the approach has a high speed of adaptation, i.e. it requires an extremely low number of labeled target training samples, even one per category can be effective. We then extensively compare this approach to the state of the art in domain adaptation in two experiments: one using datasets for handwritten digit recognition, and one using datasets for visual object recognition., Comment: Accepted to NIPS 2017. arXiv admin note: text overlap with arXiv:1709.10190

This work provides a unified framework for addressing the problem of visual supervised domain adaptation and generalization with deep models. The main idea is to exploit the Siamese architecture to learn an embedding subspace that is discriminative, and where mapped visual domains are semantically aligned and yet maximally separated. The supervised setting becomes attractive especially when only few target data samples need to be labeled. In this scenario, alignment and separation of semantic probability distributions is difficult because of the lack of data. We found that by reverting to point-wise surrogates of distribution distances and similarities provides an effective solution. In addition, the approach has a high speed of adaptation, which requires an extremely low number of labeled target training samples, even one per category can be effective. The approach is extended to domain generalization. For both applications the experiments show very promising results., Comment: International Conference on Computer Vision ICCV 2017