1. Multiple domestications of Asian rice
- Author
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Jing, Chun-Yan, Zhang, Fu-Min, Wang, Xiu-Hua, Wang, Mei-Xia, Zhou, Lian, Cai, Zhe, Han, Jing-Dan, Geng, Mu-Fan, Yu, Wen-Hao, Jiao, Zi-Hui, Huang, Lei, Liu, Rong, Zheng, Xiao-Ming, Meng, Qing-Lin, Ren, Ning-Ning, Zhang, Hong-Xiang, Du, Yu-Su, Wang, Xin, Qiang, Cheng-Gen, Zou, Xin-Hui, Gaut, Brandon S., and Ge, Song
- Abstract
The origin of domesticated Asian rice (Oryza sativaL.) has been controversial for more than half a century. The debates have focused on two leading hypotheses: a single domestication event in China or multiple domestication events in geographically separate areas. These two hypotheses differ in their predicted history of genes/alleles selected during domestication. Here we amassed a dataset of 1,578 resequenced genomes, including an expanded sample of wild rice from throughout its geographic range. We identified 993 selected genes that generated phylogenetic trees on which japonicaand indicaformed a monophyletic group, suggesting that the domestication alleles of these genes originated only once in either japonicaor indica. Importantly, the domestication alleles of most selected genes (~80%) stemmed from wild rice in China, but the domestication alleles of a substantial minority of selected genes (~20%) originated from wild rice in South and Southeast Asia, demonstrating separate domestication events of Asian rice.
- Published
- 2023
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