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AbstractIn urban systems, there is an interdependency between neighborhood roles and transportation patterns between neighborhoods. In this paper, we classify docking stations in bicycle-sharing networks to gain insight into the human mobility patterns of three major cities in the United States. We propose novel time-dependent stochastic block models, with degree-heterogeneous blocks and either mixed or discrete block membership, which classify nodes based on their time-dependent activity patterns. We apply these models to (1) detect the roles of bicycle-sharing stations and (2) describe the traffic within and between blocks of stations over the course of a day. Our models successfully uncover work blocks, home blocks, and other blocks; they also reveal activity patterns that are specific to each city. Our work gives insights for the design and maintenance of bicycle-sharing systems, and it contributes new methodology for community detection in temporal and multilayer networks with heterogeneous degrees.

Motor cortex (M1) exhibits a rich repertoire of neuronal activities to support the generation of complex movements. Although recent neuronal-network models capture many qualitative aspects of M1 dynamics, they can generate only a few distinct movements. Additionally, it is unclear how M1 efficiently controls movements over a wide range of shapes and speeds. We demonstrate that modulation of neuronal input–output gains in recurrent neuronal-network models with a fixed architecture can dramatically reorganize neuronal activity and thus downstream muscle outputs. Consistent with the observation of diffuse neuromodulatory projections to M1, a relatively small number of modulatory control units provide sufficient flexibility to adjust high-dimensional network activity using a simple reward-based learning rule. Furthermore, it is possible to assemble novel movements from previously learned primitives, and one can separately change movement speed while preserving movement shape. Our results provide a new perspective on the role of modulatory systems in controlling recurrent cortical activity.

The arrangements of particles and forces in granular materials have a complex organization on multiple spatial scales that range from local structures to mesoscale and system-wide ones. This multiscale organization can affect how a material responds or reconfigures when exposed to external perturbations or loading. The theoretical study of particle-level, force-chain, domain and bulk properties requires the development and application of appropriate physical, mathematical, statistical and computational frameworks. Traditionally, granular materials have been investigated using particulate or continuum models, each of which tends to be implicitly agnostic to multiscale organization. Recently, tools from network science have emerged as powerful approaches for probing and characterizing heterogeneous architectures across different scales in complex systems, and a diverse set of methods have yielded fascinating insights into granular materials. In this article, we review work on network-based approaches to studying granular matter and explore the potential of such frameworks to provide a useful description of these systems and to enhance understanding of their underlying physics. We also outline a few open questions and highlight particularly promising future directions in the analysis and design of granular matter and other kinds of material networks.

We study community structure in time-dependent legislation cosponsorship networks in the Peruvian Congress, and we compare them briefly to legislation cosponsorship networks in the US Senate. To study these legislatures, we employ a multilayer representation of temporal networks in which legislators in each layer are connected to each other with a weight that is based on how many bills they cosponsor. We then use multilayer modularity maximization to detect communities in these networks. From our computations, we are able to capture power shifts in the Peruvian Congress during 2006–2011. For example, we observe the emergence of ‘opportunists’, who switch from one community to another, as well as cohesive legislative communities whose initial component legislators never change communities. Interestingly, many of the opportunists belong to the group that won the majority in Congress.

We investigate the application of mesoscopic response functions (MRFs) to characterize a large set of networks of fungi and slime moulds grown under a wide variety of different experimental treatments, including inter-species competition and attack by fungivores. We construct ‘structural networks’ by estimating cord conductances (which yield edge weights) from the experimental data, and we construct ‘functional networks’ by calculating edge weights based on how much nutrient traffic is predicted to occur along each edge. Both types of networks have the same topology, and we compute MRFs for both families of networks to illustrate two different ways of constructing taxonomies to group the networks into clusters of related fungi and slime moulds. Although both network taxonomies generate intuitively sensible groupings of networks across species, treatments and laboratories, we find that clustering using the functional-network measure appears to give groups with lower intra-group variation in species or treatments. We argue that MRFs provide a useful quantitative analysis of network behaviour that can (1) help summarize an expanding set of increasingly complex biological networks and (2) help extract information that captures subtle changes in intra- and inter-specific phenotypic traits that are integral to a mechanistic understanding of fungal behaviour and ecology. As an accompaniment to our paper, we also make a large data set of fungal networks available in the public domain.

Individuals who interact with each other in social networks often exchange ideas and influence each other’s opinions. A popular approach to study the spread of opinions on networks is by examining bounded-confidence models (BCMs), in which the nodes of a network have continuous-valued states that encode their opinions and are receptive to other nodes’ opinions when they lie within some confidence bound of their own opinion. In this article, we extend the Deffuant–Weisbuch (DW) model, which is a well-known BCM, by examining the spread of opinions that coevolve with network structure. We propose an adaptive variant of the DW model in which the nodes of a network can (1) alter their opinions when they interact with neighbouring nodes and (2) break connections with neighbours based on an opinion tolerance threshold and then form new connections following the principle of homophily. This opinion tolerance threshold determines whether or not the opinions of adjacent nodes are sufficiently different to be viewed as ‘discordant’. Using numerical simulations, we find that our adaptive DW model requires a larger confidence bound than a baseline DW model for the nodes of a network to achieve a consensus opinion. In one region of parameter space, we observe ‘pseudo-consensus’ steady states, in which there exist multiple subclusters of an opinion cluster with opinions that differ from each other by a small amount. In our simulations, we also examine the roles of early-time dynamics and nodes with initially moderate opinions for achieving consensus. Additionally, we explore the effects of coevolution on the convergence time of our BCM.

Despite the success of traditional network analysis, standard networks provide a limited representation of complex systems, which often include different types of relationships (or ‘multiplexity’) between their components. Such structural complexity has a significant effect on both dynamics and function. Throwing away or aggregating available structural information can generate misleading results and be a major obstacle towards attempts to understand complex systems. The recent multilayer approach for modelling networked systems explicitly allows the incorporation of multiplexity and other features of realistic systems. It allows one to couple different structural relationships by encoding them in a convenient mathematical object. It also allows one to couple different dynamical processes on top of such interconnected structures. The resulting framework plays a crucial role in helping to achieve a thorough, accurate understanding of complex systems. The study of multilayer networks has also revealed new physical phenomena that remain hidden when using ordinary graphs, the traditional network representation. Here we survey progress towards attaining a deeper understanding of spreading processes on multilayer networks, and we highlight some of the physical phenomena related to spreading processes that emerge from multilayer structure.

In the study of infectious diseases on networks, researchers calculate epidemic thresholds to help forecast whether or not a disease will eventually infect a large fraction of a population. Because network structure typically changes with time, which fundamentally influences the dynamics of spreading processes and in turn affects epidemic thresholds for disease propagation, it is important to examine epidemic thresholds in models of disease spread on temporal networks. Most existing studies of epidemic thresholds in temporal networks have focused on models in discrete time, but most real-world networked systems evolve continuously with time. In our work, we encode the continuous time-dependence of networks in the evaluation of the epidemic threshold of a susceptible–infected–susceptible (SIS) process by studying an SIS model on tie-decay networks. We derive the epidemic-threshold condition of this model, and we perform numerical experiments to verify it. We also examine how different factors—the decay coefficients of the tie strengths in a network, the frequency of the interactions between the nodes in the network, and the sparsity of the underlying social network on which interactions occur—lead to decreases or increases of the critical values of the threshold and hence contribute to facilitating or impeding the spread of a disease. We thereby demonstrate how the features of tie-decay networks alter the outcome of disease spread.

We study statically homogeneous Bose-Einstein condensates with spatially inhomogeneous interactions and outline an experimental realization of compensating linear and nonlinear potentials that can yield constant-density solutions. We illustrate how the presence of a step in the nonlinearity coefficient can only be revealed dynamically and examine how to reveal it by exploiting the inhomogeneity of the sound speed with a defect-dragging experiment. We conduct computational experiments and observe the spontaneous emergence of dark solitary waves. We use effective-potential theory to perform a detailed analytical investigation of the existence and stability of solitary waves in this setting, and we corroborate these results computationally using a Bogoliubov-de Gennes linear stability analysis. We find that dark solitary waves are unstable for all step widths, whereas bright solitary waves can become stable through a symmetry-breaking bifurcation as one varies the step width. Using phase-plane analysis, we illustrate the scenarios that permit this bifurcation and explore the dynamical outcomes of the interaction between the solitary wave and the step. [ABSTRACT FROM AUTHOR]

AbstractWe discuss our outreach efforts to introduce school students to network science and explain why researchers who study networks should be involved in such outreach activities. We provide overviews of modules that we have designed for these efforts, comment on our successes and failures, and illustrate the potentially enormous impact of such outreach efforts.

AbstractThe singular value decomposition (SVD) is a popular matrix factorization that has been used widely in applications ever since an efficient algorithm for its computation was developed in the 1970s. In recent years, the SVD has become even more prominent due to a surge in applications and increased computational memory and speed. To illustrate the vitality of the SVD in data analysis, we highlight three of its lesser-known yet fascinating applications. The SVD can be used to characterize political positions of congressmen, measure the growth rate of crystals in igneous rock, and examine entanglement in quantum computation. We also discuss higher-dimensional generalizations of the SVD, which have become increasingly crucial with the newfound wealth of multidimensional data, and have launched new research initiatives in both theoretical and applied mathematics. With its bountiful theory and applications, the SVD is truly extraordinary.

This article discusses the 50th anniversary of the paper "Studies of Nonlinear Problems: 1" by the mathematicians Enrico Fermi, John Pasta, and Stanislaw Ulam. The central problem developed in this work, referred to as the FPU problem after the initials of its authors, is described. The question posed by the FPU problem is why it is possible to model a collision between two objects backward and forward, but collisions between many objects are not amenable to similar backward and forward modeling. The calculations developed for these problems with the mathematical numerical integrator and computer are described. The application of these findings to the study of atomic lattices in solid state physics is described.

We construct a prime symmetry relation for integers that is equivalent to Goldbach's conjecture and show that numerical computations of this prime symmetry property strongly resemble a chaotic sequence. We define and examine the notions of global and local prime quasientropies. Finally, we employ the fact that the prime number sequence satisfies the property of deterministic randomness to consider its utility for the field of quantum computation.

Focuses on the relationship between chaos and quantum mechanics. Historical evidence on the commingling of quantum mechanics and chaos in the nineteenth century; Illustration of quantum chaos; Functions of the superconducting quantum-interference device, or SQUID.

In the version of this article initially published, in the PDF, equations (2) and (4) erroneously displayed a curly bracket on the right hand side of the equation. This should not be there. The errors have been corrected in the PDF version of the article. The equations appear correctly in the HTML.

In the version of this Progress Article originally published, the left and right panels of Fig. 3, clarifying the details indicated within the centre panel, were mistakenly interchanged. This has now been corrected in all versions of the Progress Article.

In the study of networks, it is often insightful to use algorithms to determine mesoscale features such as ‘community structure’, in which densely connected sets of nodes constitute ‘communities’ that have sparse connections to other communities. The most popular way of detecting communities algorithmically is to maximize the quality function known as modularity. When maximizing modularity, one compares the actual connections in a (static or time-dependent) network to the connections obtained from a random-graph ensemble that acts as a null model. The communities are then the sets of nodes that are connected to each other densely relative to what is expected from the null model. Clearly, the process of community detection depends fundamentally on the choice of the null model, so it is important to develop and analyse novel null models that take into account appropriate features of the system under study. In this paper, we investigate the effects of using null models that incorporate spatial information, and we propose a novel null model based on the radiation model of population spread. We also develop novel synthetic spatial benchmark networks in which the connections between entities are based on the distance or flux between nodes, and we compare the performance of static and time-dependent versions of the radiation null model to the standard (‘Newman–Girvan’) null model for modularity optimization and to a recently proposed gravity null model. In our comparisons, we use both the above synthetic benchmarks and time-dependent correlation networks that we construct using countrywide dengue fever incidence data for Peru. Our findings illustrate the need to use appropriate generative models for the development of spatial null models for community detection.

Networks have become increasingly relevant to everyday life as human society has become increasingly connected. Attaining a basic understanding of networks has thus become a necessary form of literacy for people (and for youths in particular). At the NetSci 2014 conference, we initiated a year-long process to develop an educational resource that concisely summarizes essential concepts about networks that can be used by anyone of school age or older. The process involved several brainstorming sessions on one key question: ‘What should every person living in the 21st century know about networks by the time he/she finishes secondary education?’ Different sessions reached diverse participants, which included professional researchers in network science, educators and high-school students. The generated ideas were connected by the students to construct a concept network. We examined community structure in the concept network to group ideas into a set of important themes, which we refined through discussion into seven essential concepts. The students played a major role in this development process by providing insights and perspectives that were often unrecognized by researchers and educators. The final result, ‘Network Literacy: Essential Concepts and Core Ideas’, is now available as a booklet in several different languages from http://tinyurl.com/networkliteracy.

We study the long memory of order flow for each of three liquid currency pairs on a large electronic trading platform in the foreign exchange (FX) spot market. Due to the extremely high levels of market activity on the platform, and in contrast to existing empirical studies of other markets, our data enables us to perform statistically stable estimation without needing to aggregate data from different trading days. We find strong evidence of long memory, with a Hurst exponent H≈0.7, for each of the three currency pairs and on each trading day in our sample. We repeat our calculations using data that spans different trading days, and we find no significant differences in our results. We test and reject the hypothesis that the apparent long memory of order flow is an artifact caused by structural breaks, in favor of the alternative hypothesis of true long memory. We therefore conclude that the long memory of order flow in the FX spot market is a robust empirical property that persists across daily boundaries.

Multilayer relationships among entities and information about entities must be accompanied by the means to analyse, visualize and obtain insights from such data. We present open-source software (muxViz) that contains a collection of algorithms for the analysis of multilayer networks, which are an important way to represent a large variety of complex systems throughout science and engineering. We demonstrate the ability of muxViz to analyse and interactively visualize multilayer data using empirical genetic, neuronal and transportation networks. Our software is available at https://github.com/manlius/muxViz.

In most natural and engineered systems, a set of entities interact with each other in complicated patterns that can encompass multiple types of relationships, change in time and include other types of complications. Such systems include multiple subsystems and layers of connectivity, and it is important to take such ‘multilayer’ features into account to try to improve our understanding of complex systems. Consequently, it is necessary to generalize ‘traditional’ network theory by developing (and validating) a framework and associated tools to study multilayer systems in a comprehensive fashion. The origins of such efforts date back several decades and arose in multiple disciplines, and now the study of multilayer networks has become one of the most important directions in network science. In this paper, we discuss the history of multilayer networks (and related concepts) and review the exploding body of work on such networks. To unify the disparate terminology in the large body of recent work, we discuss a general framework for multilayer networks, construct a dictionary of terminology to relate the numerous existing concepts to each other and provide a thorough discussion that compares, contrasts and translates between related notions such as multilayer networks, multiplex networks, interdependent networks, networks of networks and many others. We also survey and discuss existing data sets that can be represented as multilayer networks. We review attempts to generalize single-layer-network diagnostics to multilayer networks. We also discuss the rapidly expanding research on multilayer-network models and notions like community structure, connected components, tensor decompositions and various types of dynamical processes on multilayer networks. We conclude with a summary and an outlook.

We study functional activity in the human brain using functional magnetic resonance imaging and recently developed tools from network science. The data arise from the performance of a simple behavioural motor learning task. Unsupervised clustering of subjects with respect to similarity of network activity measured over 3 days of practice produces significant evidence of ‘learning’, in the sense that subjects typically move between clusters (of subjects whose dynamics are similar) as time progresses. However, the high dimensionality and time-dependent nature of the data makes it difficult to explain which brain regions are driving this distinction. Using network centrality measures that respect the arrow of time, we express the data in an extremely compact form that characterizes the aggregate activity of each brain region in each experiment using a single coefficient, while reproducing information about learning that was discovered using the full data set. This compact summary allows key brain regions contributing to centrality to be visualized and interpreted. We thereby provide a proof of principle for the use of recently proposed dynamic centrality measures on temporal network data in neuroscience.

A letter to the editor is presented in response to an editorial on the role of the University of Oxford in solving inequalities in the society.

Coupled map lattices (CMLs) are often used to study emergent phenomena in nature. It is typically assumed (unrealistically) that each component is described by the same map, and it is important to relax this assumption. In this paper, we characterize periodic orbits and the laminar regime of type-I intermittency in heterogeneous weakly coupled map lattices (HWCMLs). We show that the period of a cycle in an HWCML is preserved for arbitrarily small coupling strengths even when an associated uncoupled oscillator would experience a period-doubling cascade. Our results characterize periodic orbits both near and far from saddle–node bifurcations, and we thereby provide a key step for examining the bifurcation structure of heterogeneous CMLs. [ABSTRACT FROM AUTHOR]

We study the structure, stability, and dynamics of dark solitary waves in parabolically trapped, collisionally inhomogeneous Bose-Einstein condensates (BECs) with spatially periodic variations of the scattering length. This collisional inhomogeneity yields a nonlinear lattice, which we tune from a small-amplitude, approximately sinusoidal structure to a periodic sequence of densely spaced spikes. We start by investigating time-independent inhomogeneities, and we subsequently examine the dynamical response when one starts with a collisionally homogeneous BEC and then switches on an inhomogeneity either adiabatically or nonadiabatically. Using Bogoliubov-de Gennes linearization as well as direct numerical simulations of the Gross-Pitaevskii equation, we observe dark solitary waves, which can become unstable through oscillatory or exponential instabilities. We find a critical wavelength of the nonlinear lattice that is comparable to the healing length. Near this value, the fundamental eigenmode responsible for the stability of the dark solitary wave changes its direction of movement as a function of the strength of the nonlinearity. When it increases, it collides with other eigenmodes, leading to oscillatory instabilities; when it decreases, it collides with the origin and becomes imaginary, illustrating that the instability mechanism is fundamentally different in wide-well versus narrow-well lattices. When starting from a collisionally homogeneous setup and switching on inhomogeneities, we find that dark solitary waves are preserved generically for aligned lattices. We briefly examine the time scales for the onset of solitary-wave oscillations in this scenario. [ABSTRACT FROM AUTHOR]

Abstract: We use limit cycle oscillators to model bipolar II disorder, which is characterized by alternating hypomanic and depressive episodes and afflicts about 1% of the United States adult population. We consider two non-linear oscillator models of a single bipolar patient. In both frameworks, we begin with an untreated individual and examine the mathematical effects and resulting biological consequences of treatment. We also briefly consider the dynamics of interacting bipolar II individuals using weakly-coupled, weakly-damped harmonic oscillators. We discuss how the proposed models can be used as a framework for refined models that incorporate additional biological data. We conclude with a discussion of possible generalizations of our work, as there are several biologically-motivated extensions that can be readily incorporated into the series of models presented here. [Copyright &y& Elsevier]