Heterotaxy, also referred to as atrial isomerism or situs ambiguous, is a rare group of heterogeneous developmental disorders of lateralization, characterized by disruption of the normal left-right axis orientation of visceral organs, including the heart, lungs, stomach, spleen, and liver. Lateralization disorders are divided into incomplete (i.e., heterotaxy), and complete (i.e., situs inversus totalis). Heterotaxy is defined by abnormal assembly of the thoracic and abdominal organs from the normal situs solitus, occurring during early embryonic development. Complex cardiac malformations are a major component of heterotaxy syndrome, with consequent significant morbidity and mortality. Atrial appendage isomerism, with either bilateral right atria (right atrial isomerism) or paired left atria (left atrial isomerism) are a pivotal feature, as well as either asplenia or polyspenia. These two features are the cornerstones of the morphologic classification of these disorders. This case study reports autopsy findings in a 39 week old neonate with heterotaxy syndrome, born to a 25 year old G2 P1 mother with no family history of anomalies, with a review of the literature.