1. Genetic landscape of Rett syndrome-like phenotypes revealed by whole exome sequencing
- Author
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Iwama, Kazuhiro, Mizuguchi, Takeshi, Takeshita, Eri, Nakagawa, Eiji, Okazaki, Tetsuya, Nomura, Yoshiko, Iijima, Yoshitaka, Kajiura, Ichiro, Sugai, Kenji, Saito, Takashi, Sasaki, Masayuki, Yuge, Kotaro, Saikusa, Tomoko, Okamoto, Nobuhiko, Takahashi, Satoru, Amamoto, Masano, Tomita, Ichiro, Kumada, Satoko, Anzai, Yuki, Hoshino, Kyoko, Fattal-Valevski, Aviva, Shiroma, Naohide, Ohfu, Masaharu, Moroto, Masaharu, Tanda, Koichi, Nakagawa, Tomoko, Sakakibara, Takafumi, Nabatame, Shin, Matsuo, Muneaki, Yamamoto, Akiko, Yukishita, Shoko, Inoue, Ken, Waga, Chikako, Nakamura, Yoko, Watanabe, Shoko, Ohba, Chihiro, Sengoku, Toru, Fujita, Atsushi, Mitsuhashi, Satomi, Miyatake, Satoko, Takata, Atsushi, Miyake, Noriko, Ogata, Kazuhiro, Ito, Shuichi, Saitsu, Hirotomo, Matsuishi, Toyojiro, Goto, Yu-ichi, and Matsumoto, Naomichi
- Abstract
BackgroundRett syndrome (RTT) is a characteristic neurological disease presenting with regressive loss of neurodevelopmental milestones. Typical RTT is generally caused by abnormality of methyl-CpG binding protein 2 (MECP2). Our objective to investigate the genetic landscape of MECP2-negative typical/atypical RTT and RTT-like phenotypes using whole exome sequencing (WES).MethodsWe performed WES on 77 MECP2-negative patients either with typical RTT (n=11), atypical RTT (n=22) or RTT-like phenotypes (n=44) incompatible with the RTT criteria.ResultsPathogenic or likely pathogenic single-nucleotide variants in 28 known genes were found in 39 of 77 (50.6%) patients. WES-based CNV analysis revealed pathogenic deletions involving six known genes (including MECP2) in 8 of 77 (10.4%) patients. Overall, diagnostic yield was 47 of 77 (61.0 %). Furthermore, strong candidate variants were found in four novel genes: a de novo variant in each of ATPase H+transporting V0 subunit A1 (ATP6V0A1), ubiquitin-specific peptidase 8 (USP8) and microtubule-associated serine/threonine kinase 3 (MAST3), as well as biallelic variants in nuclear receptor corepressor 2 (NCOR2).ConclusionsOur study provides a new landscape including additional genetic variants contributing to RTT-like phenotypes, highlighting the importance of comprehensive genetic analysis.
- Published
- 2019
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