1. Transcriptomic analysis of pathways associated with ITGAV/alpha(v) integrin-dependent autophagy in human B cells
- Author
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Muir, Virginia, Sagadiev, Sara, Liu, Shuozhi, Holder, Ursula, Armendariz, Andrea M., Suchland, Emmaline, Meitlis, Iana, Camp, Nathan, Giltiay, Natalia, Tam, Jenny M., Garner, Ethan C., Wivagg, Carl N., Shows, Donna, James, Richard G., Lacy-Hulbert, Adam, and Acharya, Mridu
- Abstract
ABSTRACTMacroautophagy/autophagy proteins have been linked with the development of immune-mediated diseases including lupus, but the mechanisms for this are unclear due to the complex roles of these proteins in multiple immune cell types. We have previously shown that a form of noncanonical autophagy induced by ITGAV/alpha(v) integrins regulates B cell activation by viral and self-antigens, in mice. Here, we investigate the involvement of this pathway in B cells from human tissues. Our data reveal that autophagy is specifically induced in the germinal center and memory B cell subpopulations of human tonsils and spleens. Transcriptomic analysis show that the induction of autophagy is related to unique aspects of activated B cells such as mitochondrial metabolism. To understand the function of ITGAV/alpha(v) integrin-dependent autophagy in human B cells, we used CRISPR-mediated knockdown of autophagy genes. Integrating data from primary B cells and knockout cells, we found that ITGAV/alpha(v)-dependent autophagy limits activation of specific pathways related to B cell responses, while promoting others. These data provide new mechanistic links for autophagy and B-cell-mediated immune dysregulation in diseases such as lupus.
- Published
- 2023
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