1. Discovery of Species-Specific Proteotypic Peptides To Establish a Spectral Library Platform for Identification of Nontuberculosis Mycobacteria from Mass Spectrometry-Based Proteomics
- Author
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Kotimoole, Chinmaya Narayana, Ramya, Vadageri Krishnamurthy, Kaur, Parvinder, Reiling, Norbert, Shandil, Radha Krishan, Narayanan, Shridhar, Flo, Trude Helen, and Prasad, Thottethodi Subrahmanya Keshava
- Abstract
Nontuberculous mycobacteria are opportunistic bacteria pulmonary and extra-pulmonary infections in humans that closely resemble Mycobacterium tuberculosis. Although genome sequencing strategies helped determine NTMs, a common assay for the detection of coinfection by multiple NTMs with M. tuberculosisin the primary attempt of diagnosis is still elusive. Such a lack of efficiency leads to delayed therapy, an inappropriate choice of drugs, drug resistance, disease complications, morbidity, and mortality. Although a high-resolution LC–MS/MS-based multiprotein panel assay can be developed due to its specificity and sensitivity, it needs a library of species-specific peptides as a platform. Toward this, we performed an analysis of proteomes of 9 NTM species with more than 20 million peptide spectrum matches gathered from 26 proteome data sets. Our metaproteomic analyses determined 48,172 species-specific proteotypic peptides across 9 NTMs. Notably, M. smegmatis(26,008), M. abscessus(12,442), M. vaccae(6487), M. fortuitum(1623), M. aviumsubsp. paratuberculosis(844), M. aviumsubsp. hominissuis(580), and M. marinum(112) displayed >100 species-specific proteotypic peptides. Finally, these peptides and corresponding spectra have been compiled into a spectral library, FASTA, and JSON formats for future reference and validation in clinical cohorts by the biomedical community for further translation.
- Published
- 2024
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