1. Genome-wide analysis and expression profiling of YUCCAgene family associated with plant vigor in Japanese apricot (prunus mumeSieb. Et zucc)
- Author
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Hayat, Faisal, Bai, Yang, Iqbal, Shahid, Ma, Chengdong, Ali, Muhammad Moaaz, Shahid, Muhammad Adnan, Hasan, Mahmood Ul, Mosa, Walid F. A., Khan, Ummara, Xiao, Huang, and Gao, Zhihong
- Abstract
Indole-3-acetic acid (IAA) is an important plant hormone required for various plant growth and developmental activities. YUCCA proteins are the enzymes for IAA synthesis that catalyze the rate-limiting step. However, the YUCCAgene family in Japanese apricot has not been thoroughly characterized. Here, we investigated the effect of rootstocks on scion growth of Japanease apricot and genes involved in auxin biosynthesis (YUCCA). Growth characteristics revealed that the height of ‘Longyan’ [Prunus mumeSieb. et Zucc] plants with P. mumerootstock were significantly shorter than ‘Longyan’ plants with P. persicarootstock. This study isolated 13 PmYUCCAgenes from the Japanese apricot genome. Bioinformatics and expression studies were undertaken to investigate the functions and characteristics of YUCCAgenes. The physicochemical properties, gene structure, conserved domains, conserved motif, and phylogenetic relationships of YUCCAgenes were determined using bioinformatics analysis. Likewise, we analyzed the expression of PmYUCCAgenes in Japanese apricot’s leaf and stem-bark (scion). The expression levels of PmYUCCA3and PmYUCCA5genes were noticeably lower in the leaves of ‘Longyan’/P. mumegraft combination than that of the ‘Longyan’/P. persicagraft combinations, suggesting their distinct roles in regulating growth vigor. This research explores the genome-wide identification, characterization, and possible relationship between growth vigor and expression profile analysis of the YUCCAgene family in Japanese apricot.
- Published
- 2023
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