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This paper presents new petrological, geochemical, isotopic (Nd) and geochronological data on magmatic rocks from the poorly known southern Ouaddaï massif, located at the southern edge of the so-called Saharan metacraton. This area is made of greenschist to amphibolite facies metasediments intruded by large pre- to syn-tectonic batholiths of leucogranites and an association of monzonite, granodiorite and biotite granite forming a late tectonic high-K calc-alkaline suite. U-Pb zircon dating yields ages of 635 ± 3 Ma and 613 ± 8 Ma on a peraluminous biotite-leucogranite (containing numerous inherited Archean and Paleoproterozoic zircon cores) and a muscovite-leucogranite, respectively. Geochemical fingerprints are very similar to some evolved Himalayan leucogranites suggesting their parental magmas were formed after muscovite and biotite dehydration melting of metasedimentary rocks. A biotite-granite sample belonging to the late tectonic high-K to shoshonitic suite contains zircon rims that yield an age of 540 ± 5 Ma with concordant inherited cores crystallized around 1050 Ma. Given the high-Mg# (59) andesitic composition of the intermediate pyroxene-monzonite, the very similar trace-element signature between the different rock types and the unradiogenic isotopic signature for Nd, the late-kinematic high-K to shoshonitic rocks formed after melting of the enriched mantle and further differentiation in the crust. These data indicate that the southern Ouaddaï was part of the Pan-African belt. It is proposed that it represents a continental back-arc basin characterized by a high-geothermal gradient during Early Ediacaran leading to anatexis of middle to lower crustal levels. After tectonic inversion during the main Pan-African phase, late kinematic high-K to shoshonitic plutons emplaced during the final post-collisional stage.