49 results on '"Britton, Tom"'
Search Results
2. Evaluation and communication of pandemic scenarios
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Gerlee, Philip, Thoreén, Henrik, Joöud, Anna Saxne, Lundh, Torbjoörn, Spreco, Armin, Nordlund, Anders, Brezicka, Thomas, Britton, Tom, Kjellberg, Magnus, Kaöllberg, Henrik, Tegnell, Anders, Brouwers, Lisa, and Timpka, Toomas
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- 2024
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3. Adipocyte turnover: relevance to human adipose tissue morphology
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Arner, Erik, Westermark, Pal O., Spalding, Kirsty L., Britton, Tom, Ryden, Mikael, Frisen, Jonas, Bernard, Samuel, and Arner, Peter
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DNA -- Health aspects ,Adipose tissues -- Physiological aspects ,Insulin -- Health aspects ,Health - Abstract
OBJECTIVE--Adipose tissue may contain few large adipocytes (hypertrophy) or many small adipocytes (hyperplasia). We investigated factors of putative importance for adipose tissue morphology. RESEARCH DESIGN AND METHODS--Subcutaneous adipocyte size and total fat mass were compared in 764 subjects with BMI 18-60 kg/[m.sup.2]. A morphology value was defined as the difference between the measured adipocyte volume and the expected volume given by a curved-fine fit for a given body fat mass and was related to insulin values. In 35 subjects, in vivo adipocyte turnover was measured by exploiting incorporation of atmospheric [sup.14]C into DNA. RESULTS--Occurrence of hyperplasia (negative morphology value) or hypertrophy (positive morphology value) was independent of sex and body weight but correlated with fasting plasma insulin levels and insulin sensitivity, independent of adipocyte volume (β-coefficient = 0.3, P < 0.0001). Total adipocyte number and morphology were negatively related (r = -0.66); i.e., the total adipocyte number was greatest in pronounced hyperplasia and smallest in pronounced hypertrophy. The absolute number of new adipocytes generated each year was 70% lower (P < 0.001) in hypertrophy than in hyperplasia, and individual values for adipocyte generation and morphology were strongly related (r = 0.7, P < 0.001). The relative death rate (~10% per year) or mean age of adipocytes (~10 years) was not correlated with morphology. CONCLUSIONS--Adipose tissue morphology correlates with insulin measures and is linked to the total adipocyte number independently of sex and body fat level. Low generation rates of adipocytes associate with adipose tissue hypertrophy, whereas high generation rates associate with adipose hyperplasia., A dipose tissue expands by increasing the volume of preexisting adipocytes (adipose hypertrophy), by generating new small adipocytes (hyperplasia), or by both. Although the amount and distribution of adipose tissue [...]
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- 2010
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4. Lipolysis - not inflammation, cell death, or lipogenesis - is involved in adipose tissue loss in cancer cachexia
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Ryden, Mikael, Agustsson, Thorhallur, Laurencikiene, Jurga, Britton, Tom, Sjolin, Eva, Isaksson, Bengt, Permert, Johan, and Arner, Peter
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Lipolysis -- Physiological aspects ,Lipolysis -- Research ,Cachexia -- Development and progression ,Cachexia -- Research ,Adipose tissues -- Physiological aspects ,Adipose tissues -- Research ,Tumor necrosis factor -- Physiological aspects ,Tumor necrosis factor -- Research ,Health - Published
- 2008
5. Narcolepsy and excessive daytime sleepiness
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Zeman, Adam, Zaiwalla, Zenobia, Britton, Tom, Douglas, Neil, Hansen, Andrew, Hicks, Jane, Howard, Robin, Meredith, Andrew, Smith, Ian, Stores, Gregory, and Wilson, Sue
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Insomnia -- Risk factors ,Narcolepsy -- Causes of ,Narcolepsy -- Diagnosis - Published
- 2004
6. An SEIR network epidemic model with manual and digital contact tracing allowing delays.
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Zhang, Dongni and Britton, Tom
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CONTACT tracing , *BRANCHING processes , *EPIDEMICS - Abstract
We consider an SEIR epidemic model on a network also allowing random contacts, where recovered individuals could either recover naturally or be diagnosed. Upon diagnosis, manual contact tracing is triggered such that each infected network contact is reported, tested and isolated with some probability and after a random delay. Additionally, digital tracing (based on a tracing app) is triggered if the diagnosed individual is an app-user, and then all of its app-using infectees are immediately notified and isolated. The early phase of the epidemic with manual and/or digital tracing is approximated by different multi-type branching processes, and three respective reproduction numbers are derived. The effectiveness of both contact tracing mechanisms is numerically quantified through the reduction of the reproduction number. This shows that app-using fraction plays an essential role in the overall effectiveness of contact tracing. The relative effectiveness of manual tracing compared to digital tracing increases if: more of the transmission occurs on the network, when the tracing delay is shortened, and when the network degree distribution is heavy-tailed. For realistic values, the combined tracing case can reduce R 0 by 20%–30%, so other preventive measures are needed to reduce the reproduction number down to 1.2–1.4 for contact tracing to make it successful in avoiding big outbreaks. • Manual and digital contact tracing in a network epidemic allowing for delays. • Reproduction numbers are derived by multi-type branching process approximation. • The efficacy of digital tracing relies on the fraction of app-users being large. • Manual tracing is more effective with short delays, heavy-tailed degree distribution. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Directed preferential attachment models: Limiting degree distributions and their tails
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Britton, Tom
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AbstractThe directed preferential attachment model is revisited. A new exact characterization of the limiting in- and out-degree distribution is given by two independentpure birth processes that are observed at a common exponentially distributed time T(thus creating dependence between in- and out-degree). The characterization gives an explicit form for the joint degree distribution, and this confirms previously derived tail probabilities for the two marginal degree distributions. The new characterization is also used to obtain an explicit expression for tail probabilities in which both degrees are large. A new generalized directed preferential attachment model is then defined and analyzed using similar methods. The two extensions, motivated by empirical evidence, are to allow double-directed (i.e. undirected) edges in the network, and to allow the probability of connecting an ingoing (outgoing) edge to a specified node to also depend on the out-degree (in-degree) of that node.
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- 2020
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8. An SIR epidemic on a weighted network
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Spricer, Kristoffer and Britton, Tom
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AbstractWe introduce a weighted configuration model graph, where edge weightscorrespond to the probability of infection in an epidemic on the graph. On these graphs, we study the development of a Susceptible–Infectious–Recovered epidemic using both Reed–Frost and Markovian settings. For the special case of having two different edge types, we determine the basic reproduction numberR0, the probability of a major outbreak, and the relative final size of a major outbreak. Results are compared with those for a calibrated unweighted graph. The degree distributions are based on both theoretical constructs and empirical network data. In addition, bivariate standard normal copulas are used to model the dependence between the degrees of the two edge types, allowing for modeling the correlation between edge types over a wide range. Among the results are that the weighted graph produces much richer results than the unweighted graph. Also, while R0always increases with increasing correlation between the two degrees, this is not necessarily true for the probability of a major outbreak nor for the relative final size of a major outbreak. When using copulas we see that these can produce results that are similar to those of the empirical degree distributions, indicating that in some cases a copula is a viable alternative to using the full empirical data.
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- 2019
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9. Who is the infector? General multi-type epidemics and real-time susceptibility processes
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Britton, Tom, Leung, Ka Yin, and Trapman, Pieter
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AbstractWe couple a multi-type stochastic epidemic process with a directed random graph, where edges have random weights (traversal times). This random graph representation is used to characterise the fractions of individuals infected by the different types of vertices among all infected individuals in the large population limit. For this characterisation, we rely on the theory of multi-type real-time branching processes. We identify a special case of the two-type model in which the fraction of individuals of a certain type infected by individuals of the same type is maximised among all two-type epidemics approximated by branching processes with the same mean offspring matrix.
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- 2019
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10. Extending susceptible-infectious-recovered-susceptible epidemics to allow for gradual waning of immunity
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El Khalifi, Mohamed and Britton, Tom
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Susceptible-infectious-recovered-susceptible (SIRS) epidemic models assume that individual immunity wanes in one leap, from complete immunity to complete susceptibility. For many diseases immunity on the contrary wanes gradually, something that has become even more evident during COVID-19 pandemic where also recently infected have a reinfection risk, and booster vaccines are given to increase immunity. Here, a novel mathematical model is presented allowing for the gradual decay of immunity following linear or exponential waning functions. The two new models and the SIRS model are compared assuming all three models have the same cumulative immunity. When no intervention is put in place, we find that the long-term prevalence is higher for the models with gradual waning. If aiming for herd immunity by continuous vaccination, it is shown that larger vaccine quantities are required when immunity wanes gradually compared with results obtained from the SIRS model, and this difference is the biggest for the most realistic assumption of exponentially waning of immunity. For parameter choices fitting to COVID-19, the critical amount of vaccine supply is about 50% higher if immunity wanes linearly, and more than 150% higher when immunity wanes exponentially, when compared with the classic SIRS epidemic model.
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- 2023
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11. SEIRS epidemics with disease fatalities in growing populations.
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Britton, Tom and Ouédraogo, Désiré
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EPIDEMIOLOGICAL models , *EXPONENTIAL functions , *EXPONENTIAL decay law , *STOCHASTIC processes , *DETERMINISTIC processes - Abstract
An SEIRS epidemic with disease fatalities is introduced in a growing population (modelled as a super-critical linear birth and death process). The study of the initial phase of the epidemic is stochastic, while the analysis of the major outbreaks is deterministic. Depending on the values of the parameters, the following scenarios are possible. i) The disease dies out quickly, only infecting few; ii) the epidemic takes off, the number of infected individuals grows exponentially, but the fraction of infected individuals remains negligible; iii) the epidemic takes off, the number of infected grows initially quicker than the population, the disease fatalities diminish the growth rate of the population, but it remains super critical, and the fraction of infected go to an endemic equilibrium; iv) the epidemic takes off, the number of infected individuals grows initially quicker than the population, the diseases fatalities turn the exponential growth of the population to an exponential decay. [ABSTRACT FROM AUTHOR]
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- 2018
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12. A stochastic vector-borne epidemic model: Quasi-stationarity and extinction.
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Britton, Tom and Traoré, Ali
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DISEASE vectors , *STOCHASTIC models , *HOSTS (Biology) , *BIOLOGICAL extinction , *QUASISTATIC processes - Abstract
We consider a stochastic model describing the spread of a vector borne disease in a community where individuals (hosts and vectors) die and new individuals (hosts and vectors) are born. The time to extinction of the disease, T Q , starting in quasi-stationary (conditional on non extinction) is studied. Properties of the limiting distribution are used to obtain an approximate expression for E ( T Q ), the mean-parameter in the exponential distribution of the time to extinction, for a finite population. It is then investigated numerically and by means of simulations how E ( T Q ) and its approximations depend on the different model parameters. [ABSTRACT FROM AUTHOR]
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- 2017
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13. Random Walks on Directed Networks: Inference and Respondent-Driven Sampling
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Malmros, Jens, Masuda, Naoki, and Britton, Tom
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Respondent-driven sampling (RDS) is often used to estimate population properties (e.g., sexual risk behavior) in hard-to-reach populations. In RDS, already sampled individuals recruit population members to the sample from their social contacts in an efficient snowball-like sampling procedure. By assuming a Markov model for the recruitment of individuals, asymptotically unbiased estimates of population characteristics can be obtained. Current RDS estimation methodology assumes that the social network is undirected, that is, all edges are reciprocal. However, empirical social networks in general also include a substantial number of nonreciprocal edges. In this article, we develop an estimation method for RDS in populations connected by social networks that include reciprocal and nonreciprocal edges. We derive estimators of the selection probabilities of individuals as a function of the number of outgoing edges of sampled individuals. The proposed estimators are evaluated on artificial and empirical networks and are shown to generally perform better than existing estimators. This is the case in particular when the fraction of directed edges in the network is large.
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- 2016
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14. On expected durations of birth–death processes, with applications to branching processes and SIS epidemics
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Ball, Frank, Britton, Tom, and Neal, Peter
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AbstractWe study continuous-time birth–death type processes, where individuals have independent and identically distributed lifetimes, according to a random variable Q, with E[Q] = 1, and where the birth rate if the population is currently in state (has size) nis a(n). We focus on two important examples, namely a(n) = ? nbeing a branching process, and a(n) = ?n(N- n) / Nwhich corresponds to an SIS (susceptible ? infective ? susceptible) epidemic model in a homogeneously mixing community of fixed size N. The processes are assumed to start with a single individual, i.e. in state 1. Let T, An, C, and Sdenote the (random) time to extinction, the total time spent in state n, the total number of individuals ever alive, and the sum of the lifetimes of all individuals in the birth–death process, respectively. We give expressions for the expectation of all these quantities and show that these expectations are insensitive to the distribution of Q. We also derive an asymptotic expression for the expected time to extinction of the SIS epidemic, but now starting at the endemic state, which is notindependent of the distribution of Q. The results are also applied to the household SIS epidemic, showing that, in contrast to the household SIR (susceptible ? infective ? recovered) epidemic, its threshold parameter R*is insensitive to the distribution of Q.
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- 2016
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15. 169 Adult brainstem glioma mimicking as a neuro-infectious process: case report and literature review
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Wu, Kit, Coulden, Amy, Mahmood, Amira, Kentley, Jonathan, Salam, Sharfaraz, Ghosh, Rhia, Reisz, Zita, Bodi, Istvan, and Britton, Tom
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Background and AimBrainstem gliomas are rare, accounting for less than 2% of adult gliomas. They are difficult to diagnose and challenging to treat [Hu et al, 2016]. Here, we report a patient with an unusual clinical presentation of brainstem glioma, supported by radiological and histopathological findings.Clinical presentationA 61-year old male retired diver presented with 2-month history of worsening occipital headache, described as a constant pressure worse on lying down with migrainous features of nausea and light-sensitivity, and intermittent episodes of double vision and poor balance.Neurological examination on admission was normal. He progressed to develop double vision, left-sided weakness and worsening swallowing and respiratory function.InvestigationsBlood tests for infections and vasculopathy were negative. Two CSF samples taken showed high protein (1.7g and 3.25g respectively) with the first showing 100% lymphocytes and the latter 56% monocytes and 42% lymphocytes. There were no malignant cells on immunophenotyping.MRIs demonstrated progressive of ring-enhancing lesions in brainstem in keeping with inflammatory con- ditions. Biopsy was not possible due to the centrally-located lesions. Despite receiving wide spectrum antimicrobials, steroids and respiratory support, he died 2 months later. Autopsy of the brain showed a glioblastoma with brainstem infiltration and cystic necrosis in the pons.SummaryGliomatosis pattern and leptomeningeal and nerve root spreading of brainstem glioblastoma can be misleading signs with neuro-infections as a differential. Early neurosurgical intervention may aid diagnosis.kitwu@doctors.org.uk
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- 2022
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16. Modelling preventive measures and their effect on generation times in emerging epidemics
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Favero, Martina, Scalia Tomba, Gianpaolo, and Britton, Tom
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We present a stochastic epidemic model to study the effect of various preventive measures, such as uniform reduction of contacts and transmission, vaccination, isolation, screening and contact tracing, on a disease outbreak in a homogeneously mixing community. The model is based on an infectivity process, which we define through stochastic contact and infectiousness processes, so that each individual has an independent infectivity profile. In particular, we monitor variations of the reproduction number and of the distribution of generation times. We show that some interventions, i.e. uniform reduction and vaccination, affect the former while leaving the latter unchanged, whereas other interventions, i.e. isolation, screening and contact tracing, affect both quantities. We provide a theoretical analysis of the variation of these quantities, and we show that, in practice, the variation of the generation time distribution can be significant and that it can cause biases in the estimation of reproduction numbers. The framework, because of its general nature, captures the properties of many infectious diseases, but particular emphasis is on COVID-19, for which numerical results are provided.
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- 2022
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17. Inhomogeneous epidemics on weighted networks
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Britton, Tom and Lindenstrand, David
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EPIDEMICS , *SOCIAL networks , *MATHEMATICAL models , *QUALITATIVE research , *PROBABILITY theory , *DISEASE susceptibility - Abstract
Abstract: A social (sexual) network is modeled by an extension of the configuration model to the situation where edges have weights, e.g., reflecting the number of sex-contacts between the individuals. An epidemic model is defined on the network such that individuals are heterogeneous in terms of how susceptible and infectious they are. The basic reproduction number R 0 is derived and studied for various examples, but also the size and probability of a major outbreak. The qualitative conclusion is that R 0 gets larger as the community becomes more heterogeneous but that different heterogeneities (degree distribution, weight, susceptibility and infectivity) can sometimes have the cumulative effect of homogenizing the community, thus making R 0 smaller. The effect on the probability and final size of an outbreak is more complicated. [Copyright &y& Elsevier]
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- 2012
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18. Maximizing the Size of the Giant
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Britton, Tom and Trapman, Pieter
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Consider a random graph where the mean degree is given and fixed. In this paper we derive the maximal size of the largest connected component in the graph. We also study the related question of the largest possible outbreak size of an epidemic occurring ‘on’ the random graph (the graph describing the social structure in the community). More precisely, we look at two different classes of random graphs. First, the Poissonian random graph in which each node iis given an independent and identically distributed (i.i.d.) random weight Xiwith E(Xi)=µ, and where there is an edge between iand jwith probability 1-e-XiXj/(µ n), independently of other edges. The second model is the thinned configuration model in which the nvertices of the ground graph have i.i.d. ground degrees, distributed as D, with E(D) = µ. The graph of interest is obtained by deleting edges independently with probability 1-p. In both models the fraction of vertices in the largest connected component converges in probability to a constant 1-q, where qdepends on Xor Dand p. We investigate for which distributions Xand Dwith given µ and p, 1-qis maximized. We show that in the class of Poissonian random graphs, Xshould have all its mass at 0 and one other real, which can be explicitly determined. For the thinned configuration model, Dshould have all its mass at 0 and two subsequent positive integers.
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- 2012
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19. PTFE resins open sales opportunities: solve a problem, make a friend, wine a customer
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Britton, Tom
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Polytetrafluoroethylene -- Usage ,Business ,Business, general - Abstract
PTFE resin-based lubricants can alter a metal component's surface characteristics thus reducing friction and lowering torque levels. To convince customers of the effectiveness of such solutions, the distributor should emphasise the reduced downtime benefits, as PTFE solutions outlast traditional lubes. Distributors should work with a supplier that uses selective distribution to keep the product unique., Are there buyers in your territory that you know you should be doing business with, but you just can't seem to get a foot in the door? Do any of [...]
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- 1993
20. A Dynamic Network in a Dynamic Population: Asymptotic Properties
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Britton, Tom, Lindholm, Mathias, and Turova, Tatyana
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We derive asymptotic properties for a stochastic dynamic network model in a stochastic dynamic population. In the model, nodes give birth to new nodes until they die, each node being equipped with a social index given at birth. During the life of a node it creates edges to other nodes, nodes with high social index at higher rate, and edges disappear randomly in time. For this model, we derive a criterion for when a giant connected component exists after the process has evolved for a long period of time, assuming that the node population grows to infinity. We also obtain an explicit expression for the degree correlation ? (of neighbouring nodes) which shows that ? is always positive irrespective of parameter values in one of the two treated submodels, and may be either positive or negative in the other model, depending on the parameters.
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- 2011
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21. Stochastic epidemic models: A survey
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Britton, Tom
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EPIDEMICS , *STOCHASTIC models , *MATHEMATICAL models in medicine , *VACCINATION , *INFECTIOUS disease transmission , *BIOMATHEMATICS - Abstract
Abstract: This paper is a survey paper on stochastic epidemic models. A simple stochastic epidemic model is defined and exact and asymptotic (relying on a large community) properties are presented. The purpose of modelling is illustrated by studying effects of vaccination and also in terms of inference procedures for important parameters, such as the basic reproduction number and the critical vaccination coverage. Several generalizations towards realism, e.g. multitype and household epidemic models, are also presented, as is a model for endemic diseases. [Copyright &y& Elsevier]
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- 2010
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22. Delivery of radiolabelled blood cells to lymphatic vessels by intradermal injection a means of investigating lymphovenous communications in the upper limb
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O'Mahony, Susan, Britton, Tom Bennett, Ballinger, James R., Solanki, Chandra K., Barber, Robert W., Mortimer, Peter S., Purushotham, Arnie D., and Michael Peters, A.
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To identify peripheral lymphovenous communications (LVCs) using labelled erythrocytes and intradermal injection. Intradermal injection delivers macromolecules to loco-regional lymph nodes faster than subcutaneous injection, suggesting easier lymphatic vessel access.
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- 2010
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23. Epidemic modelling: Aspects where stochasticity matters
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Britton, Tom and Lindenstrand, David
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Abstract: Epidemic models are always simplifications of real world epidemics. Which real world features to include, and which simplifications to make, depend both on the disease of interest and on the purpose of the modelling. In the present paper we discuss some such purposes for which a stochastic model is preferable to a deterministic counterpart. The two main examples illustrate the importance of allowing the infectious and latent periods to be random when focus lies on the probability of a large epidemic outbreak and/or on the initial speed, or growth rate, of the epidemic. A consequence of the latter is that estimation of the basic reproduction number R 0 is sensitive to assumptions about the distributions of the infectious and latent periods when using data from the early stages of an outbreak, which we illustrate with data from the H1N1 influenza A pandemic. Some further examples are also discussed as are some practical consequences related to these stochastic aspects. [Copyright &y& Elsevier]
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- 2009
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24. The Early Stage Behaviour of a Stochastic SIR Epidemic with Term-Time Forcing
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Britton, Tom and Lindholm, Mathias
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The general stochastic SIR epidemic in a closed population under the influence of a term-time forced environment is considered. An ‘environment’ in this context is any external factor that influences the contact rate between individuals in the population, but is itself unaffected by the population. Here ‘term-time forcing’ refers to discontinuous but cyclic changes in the contact rate. The inclusion of such an environment into the model is done by replacing a single contact rate ? with a cyclically alternating renewal process with k different states denoted {?(t)}t=0. Threshold conditions in terms of R?are obtained, such that R?>1 implies that p, the probability of a large outbreak, is strictly positive. Examples are given where p is evaluated numerically from which the impact of the distribution of the time periods that ?(t) spends in its different states is clearly seen.
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- 2009
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25. Lymphatic drainage pathways of the breast and the upper limb
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Britton, Tom Bennett, Solanki, Chandra K., Pinder, Sarah E., Mortimer, Peter S., Peters, A. Michael, and Purushotham, Anand D.
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To determine how often the sentinel lymph node (SLN) draining the breast is the same node as the SLN draining the upper limb. A common SLN might increase the risk of upper limb breast cancer-related lymphoedema after SLN biopsy.
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- 2009
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26. An epidemic model with infector and exposure dependent severity
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Ball, Frank and Britton, Tom
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VACCINATION , *PREVENTION of communicable diseases , *IMMUNIZATION , *EPIDEMICS - Abstract
Abstract: A stochastic epidemic model allowing for both mildly and severely infectious individuals is defined, where an individual can become severely infectious directly upon infection or if additionally exposed to infection. It is shown that, assuming a large community, the initial phase of the epidemic may be approximated by a suitable branching process and that the main part of an epidemic that becomes established admits a law of large numbers and a central limit theorem, leading to a normal approximation for the final outcome of such an epidemic. Effects of vaccination prior to an outbreak are studied and the critical vaccination coverage, above which only small outbreaks can occur, is derived. The results are illustrated by simulations that demonstrate that the branching process and normal approximations work well for finite communities, and by numerical examples showing that the final outcome may be close to discontinuous in certain model parameters and that the fraction mildly infected may actually increase as an effect of vaccination. [Copyright &y& Elsevier]
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- 2009
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27. Epidemics on Random Graphs with Tunable Clustering
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Britton, Tom, Deijfen, Maria, Lagerås, Andreas N., and Lindholm, Mathias
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In this paper a branching process approximation for the spread of a Reed-Frost epidemic on a network with tunable clustering is derived. The approximation gives rise to expressions for the epidemic threshold and the probability of a large outbreak in the epidemic. We investigate how these quantities vary with the clustering in the graph and find that, as the clustering increases, the epidemic threshold decreases. The network is modeled by a random intersection graph, in which individuals are independently members of a number of groups and two individuals are linked to each other if and only if there is at least one group that they are both members of.
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- 2008
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28. Graphs with specified degree distributions, simple epidemics, and local vaccination strategies
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Britton, Tom, Janson, Svante, and Martin-Löf, Anders
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Consider a random graph, having a prespecified degree distribution F, but other than that being uniformly distributed, describing the social structure (friendship) in a large community. Suppose that one individual in the community is externally infected by an infectious disease and that the disease has its course by assuming that infected individuals infect their not yet infected friends independently with probability p. For this situation, we determine the values of R0, the basic reproduction number, and t0, the asymptotic final size in the case of a major outbreak. Furthermore, we examine some different local vaccination strategies, where individuals are chosen randomly and vaccinated, or friends of the selected individuals are vaccinated, prior to the introduction of the disease. For the studied vaccination strategies, we determine Rv, the reproduction number, and tv, the asymptotic final proportion infected in the case of a major outbreak, after vaccinating a fraction v.
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- 2007
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29. An epidemic model with infector-dependent severity
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Ball, Frank and Britton, Tom
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A stochastic epidemic model is defined in which infected individuals have different severities of disease (e.g. mildly and severely infected) and the severity of an infected individual depends on the severity of the individual he or she was infected by; typically, severe or mild infectives have an increased tendency to infect others severely or, respectively, mildly. Large-population properties of the model are derived, using branching process approximations for the initial stages of an outbreak and density-dependent population processes when a major outbreak occurs. The effects of vaccination are considered, using two distinct models for vaccine action. The consequences of launching a vaccination program are studied in terms of the effect it has on reducing the final size in the event of a major outbreak as a function of the vaccination coverage, and also by determining the critical vaccination coverage above which only small outbreaks can occur.
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- 2007
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30. Diversification of Neoaves: integration of molecular sequence data and fossils
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Ericson, Per G.P, Anderson, Cajsa L, Britton, Tom, Elzanowski, Andrzej, Johansson, Ulf S, Källersjö, Mari, Ohlson, Jan I, Parsons, Thomas J, Zuccon, Dario, and Mayr, Gerald
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Patterns of diversification and timing of evolution within Neoaves, which includes almost 95% of all bird species, are virtually unknown. On the other hand, molecular data consistently indicate a Cretaceous origin of many neoavian lineages and the fossil record seems to support an Early Tertiary diversification. Here, we present the first well-resolved molecular phylogeny for Neoaves, together with divergence time estimates calibrated with a large number of stratigraphically and phylogenetically well-documented fossils. Our study defines several well-supported clades within Neoaves. The calibration results suggest that Neoaves, after an initial split from Galloanseres in Mid-Cretaceous, diversified around or soon after the K/T boundary. Our results thus do not contradict palaeontological data and show that there is no solid molecular evidence for an extensive pre-Tertiary radiation of Neoaves.
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- 2006
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31. An epidemic model with exposure-dependent severities
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Ball, Frank and Britton, Tom
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We consider a stochastic model for the spread of a susceptible–infective–removed (SIR) epidemic among a closed, finite population, in which there are two types of severity of infectious individuals, namely mild and severe. The type of severity depends on the amount of infectious exposure an individual receives, in that infectives are always initially mild but may become severe if additionally exposed. Large-population properties of the model are derived. In particular, a coupling argument is used to provide a rigorous branching process approximation to the early stages of an epidemic, and an embedding argument is used to derive a strong law and an associated central limit theorem for the final outcome of an epidemic in the event of a major outbreak. The basic reproduction number, which determines whether or not a major outbreak can occur given few initial infectives, depends only on parameters of the mild infectious state, whereas the final outcome in the event of a major outbreak depends also on parameters of the severe state. Moreover, the limiting final size proportions need not even be continuous in the model parameters.
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- 2005
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32. Hierarchical Bayes models for cDNA microarray gene expression.
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Lönnstedt, Ingrid and Britton, Tom
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cDNA microarrays are used in many contexts to compare mRNA levels between samples of cells. Microarray experiments typically give us expression measurements on 1000-20 000 genes, but with few replicates for each gene. Traditional methods using means and standard deviations to detect differential expression are not satisfactory in this context. A handful of alternative statistics have been developed, including several empirical Bayes methods. In the present paper we present two full hierarchical Bayes models for detecting gene expression, of which one (D) describes our microarray data very well. We also compare the full Bayes and empirical Bayes approaches with respect to model assumptions, false discovery rates and computer running time. The proposed models are compared to existing empirical Bayes models in a simulation study and for a set of data (Yuen et al., 2002), where 27 genes have been categorized by quantitative real-time PCR. It turns out that the existing empirical Bayes methods have at least as good performance as the full Bayes ones.
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- 2005
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33. Stochastic multitype epidemics in a community of households: estimation and form of optimal vaccination schemes
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Ball, Frank, Britton, Tom, and Lyne, Owen
- Subjects
- *
VACCINATION , *PREVENTION of communicable diseases , *IMMUNIZATION , *COMMUNICABLE diseases - Abstract
This paper treats a stochastic model for an SIR (susceptible → infective → removed) multitype household epidemic. The community is assumed to be closed, individuals are of different types and each individual belongs to a household. Previously obtained probabilistic and inferential results for the model are used to derive the optimal vaccination scheme. By this is meant the scheme that vaccinates the fewest among all vaccination schemes that reduce the threshold parameter below 1. This is done for the situation where all model parameters are known and also for the case where parameters are estimated from an outbreak in the community prior to vaccination. It is shown that the algorithm which chooses vaccines sequentially, at each step selecting the individual which reduces the threshold parameter the most, is not in general an optimal scheme. As a consequence, explicit characterisation of the optimal scheme is only possible in certain special cases. Two different types of vaccine responses, leaky and all-or-nothing, are considered and compared for the problems mentioned above. The methods are illustrated with some numerical examples. [Copyright &y& Elsevier]
- Published
- 2004
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34. Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs.
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Tammi, Martti T, Arner, Erik, Britton, Tom, and Andersson, Björn
- Abstract
An increasingly important problem in genome sequencing is the failure of the commonly used shotgun assembly programs to correctly assemble repetitive sequences. The assembly of non-repetitive regions or regions containing repeats considerably shorter than the average read length is in practice easy to solve, while longer repeats have been a difficult problem. We here present a statistical method to separate arbitrarily long, almost identical repeats, which makes it possible to correctly assemble complex repetitive sequence regions. The differences between repeat units may be as low as 1% and the sequencing error may be up to ten times higher. The method is based on the realization that a comparison of only a part of all overlapping sequences at a time in a data set does not generate enough information for a conclusive analysis. Our method uses optimal multi-alignments consisting of all the overlaps of each read. This makes it possible to determine defined nucleotide positions, DNPs, which constitute the differences between the repeat units. Differences between repeats are distinguished from sequencing errors using statistical methods, where the probabilities of obtaining certain combinations of candidate DNPs are calculated using the information from the multi-alignments. The use of DNPs and combinations of DNPs will allow for optimal and rapid assemblies of repeated regions. This method can solve repeats that differ in only two positions in a read length, which is the theoretical limit for repeat separation. We predict that this method will be highly useful in shotgun sequencing in the future.
- Published
- 2002
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35. Stochastic epidemics in dynamic populations: quasi-stationarity and extinction
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Andersson, Håkan and Britton, Tom
- Abstract
Abstract.: Empirical evidence shows that childhood diseases persist in large communities whereas in smaller communities the epidemic goes extinct (and is later reintroduced by immigration). The present paper treats a stochastic model describing the spread of an infectious disease giving life-long immunity, in a community where individuals die and new individuals are born. The time to extinction of the disease starting in quasi-stationarity (conditional on non-extinction) is exponentially distributed. As the population size grows the epidemic process converges to a diffusion process. Properties of the limiting diffusion are used to obtain an approximate expression for τ, the mean-parameter in the exponential distribution of the time to extinction for the finite population. The expression is used to study how τ depends on the community size but also on certain properties of the disease/community: the basic reproduction number and the means and variances of the latency period, infectious period and life-length. Effects of introducing a vaccination program are also discussed as is the notion of the critical community size, defined as the size which distinguishes between the two qualitatively different behaviours.
- Published
- 2000
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36. On critical vaccination coverage in multitype epidemics
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Britton, Tom
- Abstract
Consider an epidemic outbreak in a large population resulting in an overall proportion infected p~. The proportion needed to be vaccinated in order to prevent the epidemic, the critical vaccination coverage vc, depends on individual and social heterogeneities in the population. In the present note it is shown that vcis larger if, as is likely, individuals differ in terms of susceptibility than if they are equally susceptible.
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- 1998
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37. A Test to Detect Within‐family Infectivity when the Whole Epidemic Process is Observed
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Britton, Tom
- Abstract
An epidemic model for the spread of an infectious disease in a population of families is considered. The score test of the hypothesis that there is no higher infectivity between family members is constructed under the assumption that the epidemic process is observed continuously up to some time t. The score process is a martingale as a function of tand by letting the number of families tend to infinity, a central limit theorem for the process can be proved. The central limit theorem not only justifies a normal approximation of the test statistic—it also suggests a smaller variance estimator than expected.
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- 1997
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38. Limit theorems and tests for within family clustering in epidemic models
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Britton, Tom
- Abstract
Two stochastic epidemic models, describing the spread of a disease in a population consisting of families of individuals, are considered. Both models allow the probability of infecting individuals to be larger for members of the same family. As the number of families get large while the family sizes remain bounded, weak convergence of the epidemic processes are obtained using theory for Markov counting processes. The results are used to construct score tests of the hypothesis of no extra within family infectivity, when it is assumed that the epidemic is observed only once.
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- 1997
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39. Heterogeneity in epidemic models and its effect on the spread of infection
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Andersson, Håkan and Britton, Tom
- Abstract
We first study an epidemic amongst a population consisting of individuals with the same infectivity but with varying susceptibilities to the disease. The asymptotic final epidemic size is compared with the corresponding size for a homogeneous population. Then we group a heterogeneous population into households, assuming very high infectivity within households, and investigate how the global infection pressure is affected by rearranging individuals between the households. In both situations considered, it turns out that whether or not homogenizing the individuals or households will result in an increased spread of infection actually depends on the infectiousness of the disease.
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- 1998
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40. Inflow restrictions can prevent epidemics when contact tracing efforts are effective but have limited capacity
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Malmberg, Hannes and Britton, Tom
- Abstract
When a region tries to prevent an outbreak of an epidemic, two broad strategies are available: limiting the inflow of infected cases by using travel restrictions and quarantines or limiting the risk of local transmission from imported cases by using contact tracing and other community interventions. A number of papers have used epidemiological models to argue that inflow restrictions are unlikely to be effective. We simulate a simple epidemiological model to show that this conclusion changes if containment efforts such as contact tracing have limited capacity. In particular, our results show that moderate travel restrictions can lead to large reductions in the probability of an epidemic when contact tracing is effective but the contact tracing system is close to being overwhelmed.
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- 2020
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41. 0936 The curious case of the shepherd and the dogs severe acute meningovasculitis: return of the great imitator
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Jaffer, Fatima, Ashraghi, Mohammad, Nadarajah, Ramesh, Sibtain, Naomi, and Britton, Tom
- Abstract
A 40-year-old male presented as a wake-up stroke with right hemiparesis and aphasia consistent with a left MCA territory infarct. Rapid deterioration within 24 hours resulted in intubation thought to be secondary to malignant MCA syndrome. Within 48 hours, he had acquired new, multi-territory infarcts leading to tetraparesis. Initial ‘routine’ young stroke work-up was unyielding. MRI/MRA suggested vasculitis and CSF analysis revealed raised protein, lymphocytosis, and low glucose ratio with negative gram stain, culture and virology. HIV test was negative. Broad-spectrum antibiotics were commenced with anti-TB cover, pending results. Steroids were administered given diagnostic uncertainty whilst empirical treatment with cyclophosphamide was considered. Interval MRI at one-week post treatment showed significant improvement in vasculitis prompting testing for syphilis. Revisiting the history, the patient was in a same sex relationship and had a prodrome of increasing headaches, anorexia, insomnia, personality change and a palmar rash diagnosed as contact dermatitis, eight weeks prior to admission. Neurosyphilis was confirmed: serum RPR 1:32, TPPA>1:1280, positive EIA; CSF RPR 1:8 and TPPA>1:1280. He was treated with an extended course of antibiotics with slow improvement. We review the challenges in reaching a diagnosis and the latest BASHH guidelines – in this increasingly prevalent disease.
- Published
- 2017
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42. Estimation in emerging epidemics: biases and remedies
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Britton, Tom and Scalia Tomba, Gianpaolo
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- 2019
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43. Individual preventive social distancing during an epidemic may have negative population-level outcomes
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Leung, Ka Yin, Ball, Frank, Sirl, David, and Britton, Tom
- Abstract
The outbreak of an infectious disease in a human population can lead to individuals responding with preventive measures in an attempt to avoid getting infected. This leads to changes in contact patterns. However, as we show in this paper, rational behaviour at the individual level, such as social distancing from infectious contacts, may not always be beneficial for the population as a whole. We use epidemic network models to demonstrate the potential negative consequences at the population level. We take into account the social structure of the population through several network models. As the epidemic evolves, susceptible individuals may distance themselves from their infectious contacts. Some individuals replace their lost social connections by seeking new ties. If social distancing occurs at a high rate at the beginning of an epidemic, then this can prevent an outbreak from occurring. However, we show that moderate social distancing can worsen the disease outcome, both in the initial phase of an outbreak and the final epidemic size. Moreover, the same negative effect can arise in real-world networks. Our results suggest that one needs to be careful when targeting behavioural changes as they could potentially worsenthe epidemic outcome. Furthermore, network structure crucially influences the way that individual-level measures impact the epidemic at the population level. These findings highlight the importance of careful analysis of preventive measures in epidemic models.
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- 2018
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44. Inferring R0in emerging epidemics—the effect of common population structure is small
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Trapman, Pieter, Ball, Frank, Dhersin, Jean-Stéphane, Tran, Viet Chi, Wallinga, Jacco, and Britton, Tom
- Abstract
When controlling an emerging outbreak of an infectious disease, it is essential to know the key epidemiological parameters, such as the basic reproduction number R0and the control effort required to prevent a large outbreak. These parameters are estimated from the observed incidence of new cases and information about the infectious contact structures of the population in which the disease spreads. However, the relevant infectious contact structures for new, emerging infections are often unknown or hard to obtain. Here, we show that, for many common true underlying heterogeneous contact structures, the simplification to neglect such structures and instead assume that all contacts are made homogeneously in the whole population results in conservative estimates for R0and the required control effort. This means that robust control policies can be planned during the early stages of an outbreak, using such conservative estimates of the required control effort.
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- 2016
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45. Crowdfunding startups thrive in the u dot k dot where anyone can play angel investor.
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Britton, Tom
- Subjects
ANGEL investors ,CROWD funding ,NEW business enterprises - Abstract
(Bloomberg Businessweek) -- Crowdfunding Startups Thrive in the U.K., Where Anyone Can Play Angel Investor Some U.K. crowdfunding sites are less stringent and have started creating funds so investors can spread their investment easily into all companies on their platform instead of just one. [Extracted from the article]
- Published
- 2015
46. Dynamics of Fat Cell Turnover in Humans
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Spalding, Kirsty L., Arner, Erik, Westermark, Pål O., Bernard, Samuel, Buchholz, Bruce A., Bergmann, Olaf, Blomqvist, Lennart, Hoffstedt, Johan, Näslund, Erik, Britton, Tom, Concha, Hernan, Hassan, Moustapha, Rydén, Mikael, Frisén, Jonas, and Arner, Peter
- Abstract
In most countries today, obesity is increasing at an almost epidemic rate and creating a considerable public health problem by elevating the risk of cardiovascular disease and metabolic disorders such as type 2 diabetes. It is possible that, as a result, life expectancy will begin to decline in developed countries; this would be the first such occurrence in recent history. Factors that influence fat mass in adulthood remain incompletely understood, but increased lipid storage in predeveloped fat cells, or adipocytes, is accepted as a major determinant of fat mass in adults. The number of fat cells is constant in both lean and obese adults, even after marked weight loss, suggesting that the number of adipocytes is set in childhood and the adolescent years. It has not been established, however, whether or not the number of adipocytes changes in adulthood.
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- 2008
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47. Epidemic modelling: an introduction. Daryl J. Daley and Joe Gani, Cambridge University Press, U.K., 1999. No. of pages: xii+213. Price: £30.00. ISBN 0‐521‐64079‐2
- Author
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Britton, Tom
- Published
- 2002
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48. Who is the infector? Epidemic models with symptomatic and asymptomatic cases.
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Leung, Ka Yin, Trapman, Pieter, and Britton, Tom
- Subjects
- *
NOROVIRUSES , *EPIDEMICS , *INFLUENZA , *INFECTIOUS disease transmission , *DISTRIBUTION (Probability theory) - Abstract
What role do asymptomatically infected individuals play in the transmission dynamics? There are many diseases, such as norovirus and influenza, where some infected hosts show symptoms of the disease while others are asymptomatically infected, i.e. do not show any symptoms. The current paper considers a class of epidemic models following an SEIR (Susceptible → Exposed → Infectious → Recovered) structure that allows for both symptomatic and asymptomatic cases. The following question is addressed: what fraction ρ of those individuals getting infected are infected by symptomatic (asymptomatic) cases? This is a more complicated question than the related question for the beginning of the epidemic: what fraction of the expected number of secondary cases of a typical newly infected individual, i.e. what fraction of the basic reproduction number R 0 , is caused by symptomatic individuals? The latter fraction only depends on the type-specific reproduction numbers, while the former fraction ρ also depends on timing and hence on the probabilistic distributions of latent and infectious periods of the two types (not only their means). Bounds on ρ are derived for the situation where these distributions (and even their means) are unknown. Special attention is given to the class of Markov models and the class of continuous-time Reed–Frost models as two classes of distribution functions for latent and infectious periods. We show how these two classes of models can exhibit very different behaviour. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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49. Networks, epidemics and vaccination through contact tracing
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Shaban, Nyimvua, Andersson, Mikael, Svensson, Åke, and Britton, Tom
- Subjects
- *
SOCIAL networks , *EPIDEMICS , *VACCINATION , *MATHEMATICAL models - Abstract
Abstract: We consider a (social) network whose structure can be represented by a simple random graph having a pre-specified degree distribution. A Markovian susceptible-infectious-removed (SIR) epidemic model is defined on such a social graph. We then consider two real-time vaccination models for contact tracing during the early stages of an epidemic outbreak. The first model considers vaccination of each friend of an infectious individual (once identified) independently with probability ρ. The second model is related to the first model but also sets a bound on the maximum number an infectious individual can infect before being identified. Expressions are derived for the influence on the reproduction number of these vaccination models. We give some numerical examples and simulation results based on the Poisson and heavy-tail degree distributions where it is shown that the second vaccination model has a bigger advantage compared to the first model for the heavy-tail degree distribution. [Copyright &y& Elsevier]
- Published
- 2008
- Full Text
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