1. Deep sequencing unravels methyl jasmonate responsive novel miRNAs in Podophyllum hexandrum
- Author
-
Biswas, Soumi, Hazra, Saptarshi, and Chattopadhyay, Sharmila
- Abstract
Podophyllum hexandrum—an endangered, high-altitude medicinal herb is a vital source of the therapeutically important lignan viz. podophyllotoxin (PTOX). PTOX is widely used as a precursor for semi-synthesis of anticancer drugs etoposide, teniposide and etopophos. Although next generation sequencing has been employed to characterize the genes involved in PTOX biosynthesis; the complete biosynthetic pathway is yet to be known. miRNAs play pivotal roles in secondary metabolites biosynthesis besides plant growth and development. Till date, several novel miRNAs have been identified in different plant species, but novel miRNAs and their regulatory functions still remains unknown in P. hexandrum. Here, two small RNA libraries were prepared from control and MeJA treated cell cultures of P. hexandrum. High-throughput sequencing of these small RNA libraries yielded 59 novel miRNAs in control and 66 novel miRNAs in treated P. hexandrumapart from known miRNAs. The identified miRNAs targeted different mRNAs. Kyoto Encyclopedia of Genes and Genomes pathway analysis unveiled the role of these miRNAs in various secondary metabolites biosynthetic pathways. qRT-PCR analysis showed lower expression of a set of miRNAs identified in MeJA treated cell culture. The current study expands our knowledge of novel miRNAs mediated secondary metabolites, especially PTOX biosynthesis, in P. hexandrum.
- Published
- 2021
- Full Text
- View/download PDF