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Knowledge of population structure and genetic diversity within and between wild and farmed populations of gilthead sea bream (Sparus aurata) and European seabass (Dicentrarchus labrax) is important to achieve sustainable aquaculture production of these species and to assess the risk of genetic impacts of fish escaped from farms. Previous population genetic studies on these species have been based on a limited number of genetic markers and samples. In this study, these features were assessed using samples from 24 seabream and 25 seabass populations distributed throughout the Mediterranean Sea, and 3 wild seabream Atlantic populations. Samples were genotyped with a newly developed combined species SNP array that includes ~60K SNPs. Data from sequencing pools of individual DNA from the same populations were also used. Different approaches were employed for identifying the extent of population stratification within species. The effective population size (a parameter inversely related to the rate at which genetic variability is lost) was estimated for each population based on linkage disequilibrium. Population structure results revealed a clear differentiation between wild and farmed populations in both species. Wild populations showed a low degree of differentiation, particularly in seabream. Despite this, a slight differentiation was observed between Atlantic and Mediterranean seabream populations and between western and eastern Mediterranean seabass populations. However, farmed populations were quite heterogeneous and showed a high degree of differentiation. Some farmed populations of both species showed a genetic makeup similar to that found in wild populations. In general, the effective population size was large (> 1000) for wild and small (< 100) for farmed populations of both species. About 40% of the seabream and 80% of the seabass farmed populations had estimates of effective population size smaller than 50 highlighting the need of applying measures to control the rate at which genetic variability is lost.

A common bottlenose dolphin (Tursiops truncatus) was presented for necropsy after acute onset of gastrointestinal signs and cutaneous lesions that rapidly progressed to death. Gross and microscopic findings were characterized by locally extensive severe necrohemorrhagic fasciitis and cellulitis, and severe necrotizing myositis in the head and dorsocranial thorax, with numerous disseminated gram-positive cocci. Streptococcus agalactiaewas isolated from the lesions and from visceral organs (liver and lung), and it was identified by standard microbiology techniques. This communication is the first report of necrotizing fasciitis in a marine mammal associated with S. agalactiae.

Naturally occurring tumours in domestic animals have been recognized as an interesting opportunity for comparative oncology (MacEwen, 1990; Vail & MacEwen, 2000). Cancer is the second most frequent cause of death in humans and the first one in dogs and cats (Jemal et al. 2003). The age-adjusted overall cancer incidence per 100000 individuals per year is comparable in humans and domestic animals, being approximately 300 in humans, 381 in dogs and 264 in cats (Vail & MacEwen, 2000). When analysing the incidence by site, breast cancer is the most frequent (32%) in women, the first of all neoplasia (52%) occurring in bitches and the third (17%) in queens after lymphohaemopoietic and skin tumours (Hayes et al. 1981; Hayes & Mooney, 1985; MacEwen, 1990; MacEwen & Withrow, 1996; Jemal et al. 2003). Several other aspects contribute to the value of domestic animals as models for human cancers (MacEwen, 1990; Vail & MacEwen, 2000). Tumours occur spontaneously in companion animals that share a similar environment with humans and therefore might be exposed to similar risk factors. The high incidence of some tumour types offers large population samples. The shorter overall lifespan of domestic animals associated with a more rapid progression of cancer allows adequate comparison of response time with humans. Biological, anatomical, histopathological, genetic, and molecular similarities between some animal and human tumours are also well established (Hansen & Khanna, 2004). Finally, testing novel therapies is more ethically acceptable when treating spontaneous diseases in companion animals rather than experimentally induced pathologies in animal models. At the same time, there is an increasing interest of owners towards the use of the most advanced therapeutic tools for companion animals despite the higher economic costs associated with these therapies.

We report on the isolation and characterisation of the complete cDNA sequence encoding a novel bone morphogenetic protein‐like protein (sbMSTN‐b) in the teleost fish Sparus aurata. The encoded protein is 68% identical to S. aurataMSTN at the amino acid level, and homologues were also found in Umbrina cirrosaand Tetraodon nigroviridis. Phylogenetic analysis suggests that the MSTN‐bgene may be present in most, perhaps all, teleost fish species. RT‐PCR on different tissues/stages indicates that MSTN‐b is expressed almost exclusively in the central nervous system, starting from late larval stages. Quantitative analyses indicate an increase of sbMSTN‐bexpression in the brain associated with metamorphosis, at the same time as completion of nervous system differentiation.

We report on the isolation and characterisation of the complete cDNA sequence encoding a novel bone morphogenetic protein-like protein (sbMSTN-b) in the teleost fish Sparus aurata. The encoded protein is 68% identical to S. aurataMSTN at the amino acid level, and homologues were also found in Umbrina cirrosaand Tetraodon nigroviridis. Phylogenetic analysis suggests that the MSTN-bgene may be present in most, perhaps all, teleost fish species. RT-PCR on different tissues/stages indicates that MSTN-b is expressed almost exclusively in the central nervous system, starting from late larval stages. Quantitative analyses indicate an increase of sbMSTN-bexpression in the brain associated with metamorphosis, at the same time as completion of nervous system differentiation.

•2bRAD data imputation yielded larger SNP data set and allowed the identification of more QTLs for disease resistance.•Machine learning-based phenotype prediction showed higher performance than Bayesian regression methods.•Higher classification performance might be due to non-additive effects.

•Genomic selection plays an increasing role in selective breeding of the major aquaculture species.•The potential of genomic selection to increase precision of estimated breeding value of candidates is now well established.•The main challenge for further implementation of genomic selection is associated with the costs and benefits of genotyping.•Methods of low-cost genotyping hold potential and will help transfer the benefits to aquaculture industries.

A microalga was isolated from the pack-ice of Wood Bay (Antarctica) during austral summer 1993-4. By comparison with an authentic strain obtained from Sammlung von Algenkulturen at the University of Go$ ttingen (SAG 860-3), its ultrastructural details and pigment composition were very similar to those of Pleurochloris meiringensis. However, sequence analysis of the entire 18S rRNA gene revealed substantial genetic divergence (57 nucleotide substitutions and 19 insertions/deletions) between SAG 860-3 and the Antarctic isolate. Phylogenetic analysis of complete 18S rRNA gene sequences from 18 microalgal species, including the two strains studied, rejected the hypothesis that the Antarctic isolate is the sister species to Pleurochloris meiringensis. Molecular evidence indicates that the Antarctic isolate is the sister group of a clade that comprises two other representatives of the Xanthophyceae (synonym Tribophyceae): Pleurochloris meiringensis and Botrydiopsis intercedens. This leads us to conclude that this microalga is a new species belonging to a new genus and the name Pseudopleurochloris antarctica is proposed.

A microalga was isolated from the pack-ice of Wood Bay (Antarctica) during austral summer 1993–4. By comparison with an authentic strain obtained from Sammlung von Algenkulturen at the University of Göttingen (SAG 860–3), its ultrastructural details and pigment composition were very similar to those of Pleurochloris meiringensis. However, sequence analysis of the entire 18S rRNA gene revealed substantial genetic divergence (57 nucleotide substitutions and 19 insertions/deletions) between SAG 860–3 and the Antarctic isolate. Phylogenetic analysis of complete 18S rRNA gene sequences from 18 microalgal species, including the two strains studied, rejected the hypothesis that the Antarctic isolate is the sister species to Pleurochloris meiringensis. Molecular evidence indicates that the Antarctic isolate is the sister group of a clade that comprises two other representatives of the Xanthophyceae (synonym Tribophyceae): Pleurochloris meiringensis and Botrydiopsis intercedens. This leads us to conclude that this microalga is a new species belonging to a new genus and the name Pseudopleurochloris antarctica is proposed.

Emx1and Emx2genes are known to be involved in mammalian forebrain development. In order to investigate the evolution of the Emxgene family in vertebrates, a phylogenetic analysis was carried out on the Emxgenes sequenced in man, mice, frogs, coelacanths and zebrafish. The results demonstrated the existence of two clades (Emx1and Emx2), each grouping one of the two genes of the investigated taxa. The only exception was the zebrafish Emx1–like gene which turned out to be a sister group to both the Emx1and Emx2clusters. Such striking sequence divergence observed for the zebrafish Emx1–like gene could indicate that it is not orthologous to the other Emx1genes, and therefore, in vertebrates there must be three Emxgenes. Alternatively, if the zebrafish emx1gene is orthologous to the tetrapod one, it must have undergone to strong diversifying selection.

The subfamily of fishes Trematominae is endemic to the subzero waters of Antarctica and is part of the larger notothenioid radiation. Partial mitochondrial sequences from the 12S and 16S ribosomal RNA (rRNA) genes and a phylogeny for 10 trematomid species are presented. As has been previously suggested, two taxa,Trematomus scottiandT. newnesi,do not appear to be part of the main trematomid radiation. The genusPagotheniais nested within the genusTrematomusand has evolved a unique cyropelagic existence, an association with pack ice. Using a mitochondrial rRNA molecular clock rate of 0.14% transversion changes per million years, the average age of the trematomids is estimated at 3.4 million years (MY). If the age of the tre- matomids is approximately 3.4 MY, this group could have speciated during a period of deglaciation in Antarctica 2.5–4.8 million years ago. This era was marked by significant changes on the Antarctic shores, such as the opening of fjords, which might have provided a stimulus for speciation.

The phylogeny of the grey mullets is considered problematic both at the intra- and interfamily level. Such a difficulty arises from the highly homogeneous morphology displayed by this group of fish and, consequently, from the paucity of the key morphological characters suitable to address their phylogeny and evolution. In the present work, we have approached the phylogenetic and evolutionary relationships of seven species of Mugilidae, six of which from the Mediterranean Sea, on the basis of the DNA sequences of two mitochondrial genes (cytochromeband 12S rRNA). Despite the morphological homogeneity exhibited by the taxa considered, the two species of the genusMugil(M. cephalusandM. curema) showed a remarkable genetic divergence compared to all the other members of the family. The relative rate test revealed a significantly higher rate of evolution along theMugillineage.

PCR amplification and direct sequencing of regions of the cytochrome band 16S rRNA mitochondrial genes was carried out on Italian and Irish populations of the brown trout (Salmo trutta) species complex. These included S. t. marmoratus, S. t. macrostigma, Salmo carpio,and Salmo fibrenicollected in Italy, and S. t. truttamorpha fario, from both Italy and Ireland. Samples of Atlantic salmon (Salmo salar) were also examined and used as an outgroup in the phylogenetic analysis. Results based on 592 bp indicated differentiation between fariomorphs from Italy and Ireland. Despite the large phenotypic differences within Italian salmonids, very low genetic variation was found. On the basis of the mtDNA sequences studied, S. carpioand S. fibreni, which have been described as good species, are genetically undifferentiated from the other Italian taxa. The finding of a haplotype from Ireland in the Brenta River in Italy stresses the importance of conservation genetics studies aimed at identifying and preserving native genotypes.

Of all environmental factors, seawater temperature plays a decisive role in triggering marine diseases. Like fever in vertebrates, high seawater temperature could modulate the host response to pathogens in ectothermic animals. In France, massive mortality of Pacific oysters, Crassostrea gigas, caused by the ostreid herpesvirus 1 (OsHV-1) is markedly reduced when temperatures exceed 24°C in the field. In the present study we assess how high temperature influences the host response to the pathogen by comparing transcriptomes (RNA sequencing) during the course of experimental infection at 21°C (reference) and 29°C. We show that high temperature induced host physiological processes that are unfavorable to the viral infection. Temperature influenced the expression of transcripts related to the immune process and increased the transcription of genes related to the apoptotic process, synaptic signaling and protein processes at 29°C. Concomitantly, the expression of genes associated with catabolism, metabolite transport, macromolecule synthesis and cell growth remained low from the first stage of infection at 29°C. Moreover, viral entry into the host might have been limited at 29°C by changes in extracellular matrix composition and protein abundance. Overall, these results provide new insights into how environmental factors modulate host–pathogen interactions.